******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SRB8/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:347413-347928 1.0000 100 chrVIII:471406-472393 1.0000 100 chrXV:159154-160150 1.0000 100 chrVII:319253-320144 1.0000 100 chrXI:430621-432287 1.0000 100 chrI:166177-166616 1.0000 100 chrIV:1278062-1279962 1.0000 100 chrXVI:819322-819970 1.0000 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chrVII:647955-648490 1.0000 100 chrX:545346-545446 1.0000 100 chrXV:986957-989608 1.0000 100 chrIV:236183-237628 1.0000 100 chrXIII:758586-759598 1.0000 100 chrII:413484-414851 1.0000 100 chrIV:229448-230995 1.0000 100 chrXI:458007-458971 1.0000 100 chrXIV:664256-665142 1.0000 100 chrVIII:466814-467292 1.0000 100 chrXII:374211-374775 1.0000 100 chrII:236511-237437 1.0000 100 chrIX:248588-249782 1.0000 100 chrX:396538-396638 1.0000 100 chrII:304271-305738 1.0000 100 chrIII:137255-139022 1.0000 100 chrXII:924453-925131 1.0000 100 chrV:438506-439014 1.0000 100 chrIII:57391-59879 1.0000 100 chrIV:667703-668199 1.0000 100 chrXIV:503143-503353 1.0000 100 chrVII:730975-731434 1.0000 100 chrIX:316134-318562 1.0000 100 chrVII:440501-440990 1.0000 100 chrXII:201636-202770 1.0000 100 chrVII:364018-364443 1.0000 100 chrXVI:463265-464171 1.0000 100 chrIX:382015-383006 1.0000 100 chrXI:307929-308420 1.0000 100 chrII:88961-90429 1.0000 100 chrX:227715-227815 1.0000 100 chrI:81940-82414 1.0000 100 chrXII:710478-710895 1.0000 100 chrXVI:134807-135868 1.0000 100 chrX:204554-204654 1.0000 100 chrXIII:732036-733577 1.0000 100 chrV:191935-192638 1.0000 100 chrXI:380901-382470 1.0000 100 chrVII:774159-774733 1.0000 100 chrXII:837570-839754 1.0000 100 chrX:415734-415834 1.0000 100 chrXV:1027759-1029078 1.0000 100 chrIV:976435-977298 1.0000 100 chrV:41999-42678 1.0000 100 chrIV:758798-759647 1.0000 100 chrXIII:873384-874187 1.0000 100 chrVIII:237766-238135 1.0000 100 chrXVI:665661-666477 1.0000 100 chrVI:222752-224141 1.0000 100 chrVIII:103633-105527 1.0000 100 chrXII:1011647-1013688 1.0000 100 chrIV:306668-309550 1.0000 100 chrVII:1003988-1004421 1.0000 100 chrXIV:348980-350636 1.0000 100 chrXII:636615-640191 1.0000 100 chrXII:514040-517036 1.0000 100 chrXII:805314-807122 1.0000 100 chrIV:1328520-1329513 1.0000 100 chrXIII:480381-480801 1.0000 100 chrXV:505045-506732 1.0000 100 chrXII:521651-523808 1.0000 100 chrIV:1239331-1240142 1.0000 100 chrXI:558669-559860 1.0000 100 chrXIII:271404-272654 1.0000 100 chrXV:28407-30866 1.0000 100 chrIV:1266300-1267189 1.0000 100 chrXIV:507261-507470 1.0000 100 chrVI:220063-222438 1.0000 100 chrX:120294-120394 1.0000 100 chrXIII:320925-321317 1.0000 100 chrXVI:338485-339347 1.0000 100 chrXIII:305944-307260 1.0000 100 chrII:255074-257970 1.0000 100 chrV:460525-462876 1.0000 100 chrII:9374-10003 1.0000 100 chrXI:302720-303220 1.0000 100 chrIV:45182-46223 1.0000 100 chrVII:648759-649342 1.0000 100 chrIX:197365-197793 1.0000 100 chrIV:83441-83977 1.0000 100 chrXIV:426854-427640 1.0000 100 chrI:65942-67867 1.0000 100 chrIX:231812-233196 1.0000 100 chrXI:163386-165489 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SRB8/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SRB8/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SRB8/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.293 C 0.207 G 0.207 T 0.293 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SRB8/background): A 0.298 C 0.202 G 0.202 T 0.298 ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAAAYGMYCNMDMBGRGRWTCGAAC MEME-1 width = 30 sites = 68 llr = 1311 E-value = 1.9e-250 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAAAYGMYCNMDMBGRGRWTCGAAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 8889996761:3112333:14:64:::aa: pos.-specific C 1:1:::::13:54534:543:::1:8:::a probability G :1::1:111:82223232366a42::a::: matrix T 1111:122252132224:2:1::3a2:::: bits 2.3 * * * 2.1 * * * 1.8 * * **** 1.6 * * **** Relative 1.4 * * * ****** Entropy 1.2 ** * * ****** (27.8 bits) 0.9 * *** * * ** ****** 0.7 ****** * **** ****** 0.5 ************ ****** ****** 0.2 *********************** ****** 0.0 ------------------------------ Multilevel AAAAAAAAATGCCCCCTCCGGGAATCGAAC consensus TTTCTATGGAAAGCA GT T sequence A GGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAAYGMYCNMDMBGRGRWTCGAAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrX:396538-396638 + 25 3.24e-12 AAGAAATATA AAAAAGAAATGCGCAAGCCCGGAATCGAAC CGGGGGCCCA chrXV:282003-282422 - 52 3.24e-12 GTGGTGGACA AAAAAGAAATGCGCAAGCCCGGAATCGAAC CGGGGGCCCA chrXV:976288-976723 - 18 3.24e-12 CATATTAGCA AAAAAATATTGCTCCAGGGGAGGTTCGAAC TCTCGACCTT chrV:443020-443377 + 45 4.43e-12 AAGATTTTCA AAAAAAATATGGTCTCTAGCGGGATCGAAC CGCTGATCCC chrXII:1051922-1052202 + 50 4.43e-12 CTTAAAGTAA AAAAAATAATGGTCTCTAGCGGGATCGAAC CGCTGATCCC chrIII:150951-151587 + 56 8.14e-12 TTTTTCCAAG AAAAAAGAAAGCCCTGTAGGGGGCTCGAAC CCCTAACCTT chrVI:162026-162523 - 54 8.14e-12 AATCAGAAAA AAAAGAAACTGCGCAAGCCCGGAATCGAAC CGGGGGCCCA chrXVI:775365-776159 + 44 1.09e-11 TTAGTAGTCT AAAAAAGAAAGCTCGCACTCAGGATCGAAC TAAGGACCAA chrXIII:572631-573115 + 51 1.26e-11 AAAGTTTTGA AAAAAAATGTGCTCCAGGGGAGGTTCGAAC TCTCGACCTT chrX:204554-204654 - 3 1.45e-11 TTCAAGGGCC AAAAAAAATCTCCGCGACGGGGAATTGAAC CC chrXI:307929-308420 + 11 1.93e-11 ATCTGACGGA AAAAAAAATTGATTTCGCCCAGGATCGAAC TGGGGACGTT chrV:438506-439014 - 43 1.93e-11 CGTTTTCGAA AAAAAAAATTGATTTCGCCCAGGATCGAAC TGGGGACGTT chrX:390806-390906 + 17 1.93e-11 AGATATACGT ATAAAAATATGCTCCAGGGGAGGTTCGAAC TCTCGACCTT chrII:644969-645461 - 53 1.93e-11 GTATAGAAAC AAAAAATAACTCCGATACGGGGAGTCGAAC CCCGGTCTCC chrXIII:480381-480801 + 71 2.90e-11 TTGAATCTTC AAAAAAAGAAGCCCTGTAGGGGGCTCGAAC chrVII:185501-185942 + 34 3.32e-11 ATTTGAGCCT AAAAAAGATAGCCCTGTAGGGGGCTCGAAC CCCTAACCTT chrXII:214707-215062 + 40 3.32e-11 AATAAAAGTA AAAAATAAATGGACGCAACCGGAATCGAAC CGATGACCTC chrIV:1256756-1257275 + 34 3.79e-11 AAAAAAATTG CACAAAAAATGCGGAAGCCGGGAATCGAAC CCGGGCCCCA chrII:642769-643241 + 43 3.79e-11 GATTGCAAAA AAAAAAAGAAGCTCGCACTCAGGATCGAAC TAAGGACCAA chrXII:426908-427461 - 49 5.59e-11 ATAGAAGCTT AAAAAAATTCTCCGCGACGGGGAATTGAAC CCCGATCTGG chrV:354690-355367 - 7 7.20e-11 GTATGATGTC AAAAAAGTACTCCGATACGGGGAGTCGAAC CCCGGT chrV:176882-177445 - 37 7.20e-11 TGTAGCCATC AAAAAAGTACTCCGATACGGGGAGTCGAAC CCCGGTCTCC chrXII:975737-976177 + 67 1.33e-10 TTAATGCAAA AAAAATAAACGACCCCAGTGAGGGTTGAAC TCAC chrIX:336020-336622 + 69 1.49e-10 TCAGTTATGG TAAAAAAATCTCCGCGACGGGGAATTGAAC CC chrII:9374-10003 - 8 2.97e-10 AAATCATCAA AAAAAATACTGAAGGATGCGAGGTTCGAAC TCGCGCG chrXIV:725881-726328 + 71 2.97e-10 ACAAAATAAA AAAAAATACTGAAGGATGCGAGGTTCGAAC chrX:424225-424325 + 8 2.97e-10 TAAGGAC AAAAAATACTGAAGGATGCGAGGTTCGAAC TCGCGCGGAC chrVIII:358290-358746 + 1 3.32e-10 . AAAAAAATATGCGAATTCTGTGGATCGAAC ACAGGACCTC chrII:36245-36780 - 6 3.32e-10 GAATGCTAGC AAAAAAGAATGCGAATTCTGTGGATCGAAC ACAGG chrXIV:96009-96521 + 17 3.71e-10 GCAATGTCAT CAAAAAATTTGAGCGGTACGAGAATCGAAC CCGTGTCCCC chrIV:488425-489212 + 20 3.71e-10 TTTACGATAA AAAAGATTCTGATCCAACCGAGGTTCGAAC TCGGGATCTT chrX:414794-414894 - 48 4.13e-10 TGGGCAAGAA AAAAATATTAGCCCTGTAGGGGGCTCGAAC CCCTAACCTT chrXIII:290601-291148 - 28 4.13e-10 AATTTCTTCA AAAAGAAGACTCCGATACGGGGAGTCGAAC CCCGGTCTCC chrIII:127586-127970 - 41 4.13e-10 AAAAGAAAAG AAAAATTAACGACCCCAGTGAGGGTTGAAC TCACGATCTT chrVII:774159-774733 - 5 4.61e-10 CATTAAAAGT AAAAAAATTTGGACGAGTCCGGAATCGAAC CGGA chrV:434389-434756 + 10 4.61e-10 GACAGGTAA AAAAGAAAATGCCATCTCCTAGAATCGAAC CAGGGTTTCA chrXIII:320925-321317 + 67 5.13e-10 TAGCCAAAAA AATAAAAAATGGACGAGTCCGGAATCGAAC CGGA chrIII:90863-91140 - 1 5.70e-10 ATGTTGAGGA AAAAAATAATGGTTGCTAAGAGATTCGAAC chrXV:340091-340582 + 4 5.70e-10 GTT AAAAAAAATCTTCCCCGCCAGGACTTGAAC CTGGAATCTT chrVII:422902-423519 - 25 5.70e-10 TTTAAATGGA AAAAAATAATGGTTGCTAAGAGATTCGAAC TCTTGCATCT chrIV:1095145-1095664 + 7 5.70e-10 GGGAAA AAATAAAAATGCGAACTCTGTGGATCGAAC ACAGGACCTC chrXVI:744088-744579 - 52 6.33e-10 AACTTTAGGG AAAAAATTTTGCCACCTGTCAGAATTGAAC TAACGACCTT chrVII:541721-542150 - 16 8.64e-10 AGAGGTAAGA AAAAGAACACTCCGATACGGGGAGTCGAAC CCCGGTCTCC chrXIII:372185-372653 + 67 9.56e-10 TGATAAAGTG CTAAAAAAATGATTTCGCCCAGGATCGAAC TGGG chrIV:1305408-1306073 - 2 1.06e-09 ATAAAAACAT TAAAAATAACGACAACTGCAGGACTCGAAC C chrXVI:622234-622869 + 30 1.06e-09 GGCAGGTCGA AAAAATAAATGCGAATTCTGTGGATCGAAC ACAGGACCTC chrVII:730975-731434 - 36 1.42e-09 GCTCATTTCA AGCAAAAAACGACCCCAGTGAGGGTTGAAC TCACGATCTT chrXII:604945-605615 + 61 1.57e-09 TTAAAAAAAA AAGAGAAAGTGCTCGAGGTGGGGATTGAAC CCACGACGGT chrV:130806-131414 + 13 1.90e-09 CTGAGCGGGG GAAAAAAATAGGTCTTACCCGGATTCGAAC CGGGGTTGTT chrXV:464291-464855 - 8 2.29e-09 TAAATAATTA AAAATAAAAGGGGCGAGCTGGGAATTGAAC CCAGGGC chrXVI:768961-769472 + 32 2.52e-09 CGTGCAAAAA AGTAAAGAACTCCTCATAGGGGGCTCGAAC CCCTGACATT chrXI:578743-579406 - 16 2.52e-09 AATCTAAAAA AGTAAAGAACTCCTCATAGGGGGCTCGAAC CCCTGACATT chrXII:628171-628816 - 34 4.33e-09 TTTCGGAAGG CAAAAATAATGGTTGCTAAGAGATTCGAAC TCTTGCATCT chrXI:140664-141438 + 8 4.73e-09 AAGATAA TAATGAAAACTCCGATACGGGGAGTCGAAC CCCGGTCTCC chrIV:619704-620240 + 38 4.73e-09 AGAAAAATGT ATAAAAAATCTTCCCCGCCAGGACTTGAAC CTGGAATCTT chrVII:823345-823732 - 47 5.16e-09 TAATGTAATC TTCAAAAAATGATTTCGCCCAGGATCGAAC TGGGGACGTT chrXVI:689413-689884 - 28 8.56e-09 ATAATTTCAA AAAATAATACGACACCAGCAGGATTTGAAC CAGCGCGGGC chrII:266198-266668 - 47 8.56e-09 TTTTCAGTAT TCAAAAAAATGCTTCCAATCGGATTTGAAC CGATGATCTC chrXV:287796-288782 - 21 1.18e-08 GTGCAAAAGT AAAAAAATATCTCCCGGGGGCGAGTCGAAC GCCCGATCTC chrX:538433-538533 - 51 1.28e-08 AAAAAAAAAA AATAATCAACGTTCCGTACGGGACTCGAAC CCGCAGTCTT chrVIII:115830-116409 + 29 1.62e-08 GGGAAATCAA TGCAAAAAATGCTTCCAATCGGATTTGAAC CGATGATCTC chrVII:287074-287614 + 47 1.89e-08 TCACTTGCAG TATAAAAAATGAAACGGACAGGAATTGAAC CTGCAACCCT chrV:487071-487564 + 55 2.19e-08 TGAAAAAATA TAACGAATACTCCGATACGGGGAGTCGAAC CCCGGTCTCC chrII:347413-347928 - 46 2.19e-08 TATATTAAAA AAATATTACTGAAGGATGCGAGGTTCGAAC TCGCGCGGAC chrIV:1150502-1151148 + 58 3.16e-08 ATGTAGAAAA AATAAAGTGCGTCACAGACAGGATTCGAAC CTGCGCAGGT chrXV:300879-301496 - 41 4.19e-08 CTTTTCAATA GTAAAAAAGGGGGCGAGCTGGGAATTGAAC CCAGGGCCTC chrVII:779423-779939 - 36 4.49e-08 AAAATTAAAA AAGTAATCTTGAGCGGTACGAGAATCGAAC CCGTGTCCCC chrXIII:807986-808525 + 32 5.14e-08 AATACGAAAA ATGAAGGGAAGGTCCCACCCGGATTCGAAC TGGGGTTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAAYGMYCNMDMBGRGRWTCGAAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:396538-396638 3.2e-12 24_[+1]_46 chrXV:282003-282422 3.2e-12 51_[-1]_19 chrXV:976288-976723 3.2e-12 17_[-1]_53 chrV:443020-443377 4.4e-12 44_[+1]_26 chrXII:1051922-1052202 4.4e-12 49_[+1]_21 chrIII:150951-151587 8.1e-12 55_[+1]_15 chrVI:162026-162523 8.1e-12 53_[-1]_17 chrXVI:775365-776159 1.1e-11 43_[+1]_27 chrXIII:572631-573115 1.3e-11 50_[+1]_20 chrX:204554-204654 1.5e-11 2_[-1]_68 chrXI:307929-308420 1.9e-11 10_[+1]_60 chrV:438506-439014 1.9e-11 42_[-1]_28 chrX:390806-390906 1.9e-11 16_[+1]_54 chrII:644969-645461 1.9e-11 52_[-1]_18 chrXIII:480381-480801 2.9e-11 70_[+1] chrVII:185501-185942 3.3e-11 33_[+1]_37 chrXII:214707-215062 3.3e-11 39_[+1]_31 chrIV:1256756-1257275 3.8e-11 33_[+1]_37 chrII:642769-643241 3.8e-11 42_[+1]_28 chrXII:426908-427461 5.6e-11 48_[-1]_22 chrV:354690-355367 7.2e-11 6_[-1]_64 chrV:176882-177445 7.2e-11 36_[-1]_34 chrXII:975737-976177 1.3e-10 66_[+1]_4 chrIX:336020-336622 1.5e-10 68_[+1]_2 chrII:9374-10003 3e-10 7_[-1]_63 chrXIV:725881-726328 3e-10 70_[+1] chrX:424225-424325 3e-10 7_[+1]_63 chrVIII:358290-358746 3.3e-10 [+1]_70 chrII:36245-36780 3.3e-10 5_[-1]_65 chrXIV:96009-96521 3.7e-10 16_[+1]_54 chrIV:488425-489212 3.7e-10 19_[+1]_51 chrX:414794-414894 4.1e-10 47_[-1]_23 chrXIII:290601-291148 4.1e-10 27_[-1]_43 chrIII:127586-127970 4.1e-10 40_[-1]_30 chrVII:774159-774733 4.6e-10 4_[-1]_66 chrV:434389-434756 4.6e-10 9_[+1]_61 chrXIII:320925-321317 5.1e-10 66_[+1]_4 chrIII:90863-91140 5.7e-10 [-1]_70 chrXV:340091-340582 5.7e-10 3_[+1]_67 chrVII:422902-423519 5.7e-10 24_[-1]_46 chrIV:1095145-1095664 5.7e-10 6_[+1]_64 chrXVI:744088-744579 6.3e-10 51_[-1]_19 chrVII:541721-542150 8.6e-10 15_[-1]_55 chrXIII:372185-372653 9.6e-10 66_[+1]_4 chrIV:1305408-1306073 1.1e-09 1_[-1]_69 chrXVI:622234-622869 1.1e-09 29_[+1]_41 chrVII:730975-731434 1.4e-09 35_[-1]_35 chrXII:604945-605615 1.6e-09 60_[+1]_10 chrV:130806-131414 1.9e-09 12_[+1]_58 chrXV:464291-464855 2.3e-09 7_[-1]_63 chrXVI:768961-769472 2.5e-09 31_[+1]_39 chrXI:578743-579406 2.5e-09 15_[-1]_55 chrXII:628171-628816 4.3e-09 33_[-1]_37 chrXI:140664-141438 4.7e-09 7_[+1]_63 chrIV:619704-620240 4.7e-09 37_[+1]_33 chrVII:823345-823732 5.2e-09 46_[-1]_24 chrXVI:689413-689884 8.6e-09 27_[-1]_43 chrII:266198-266668 8.6e-09 46_[-1]_24 chrXV:287796-288782 1.2e-08 20_[-1]_50 chrX:538433-538533 1.3e-08 50_[-1]_20 chrVIII:115830-116409 1.6e-08 28_[+1]_42 chrVII:287074-287614 1.9e-08 46_[+1]_24 chrV:487071-487564 2.2e-08 54_[+1]_16 chrII:347413-347928 2.2e-08 45_[-1]_25 chrIV:1150502-1151148 3.2e-08 57_[+1]_13 chrXV:300879-301496 4.2e-08 40_[-1]_30 chrVII:779423-779939 4.5e-08 35_[-1]_35 chrXIII:807986-808525 5.1e-08 31_[+1]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAAYGMYCNMDMBGRGRWTCGAAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAAAYGMYCNMDMBGRGRWTCGAAC width=30 seqs=68 chrX:396538-396638 ( 25) AAAAAGAAATGCGCAAGCCCGGAATCGAAC 1 chrXV:282003-282422 ( 52) AAAAAGAAATGCGCAAGCCCGGAATCGAAC 1 chrXV:976288-976723 ( 18) AAAAAATATTGCTCCAGGGGAGGTTCGAAC 1 chrV:443020-443377 ( 45) AAAAAAATATGGTCTCTAGCGGGATCGAAC 1 chrXII:1051922-1052202 ( 50) AAAAAATAATGGTCTCTAGCGGGATCGAAC 1 chrIII:150951-151587 ( 56) AAAAAAGAAAGCCCTGTAGGGGGCTCGAAC 1 chrVI:162026-162523 ( 54) AAAAGAAACTGCGCAAGCCCGGAATCGAAC 1 chrXVI:775365-776159 ( 44) AAAAAAGAAAGCTCGCACTCAGGATCGAAC 1 chrXIII:572631-573115 ( 51) AAAAAAATGTGCTCCAGGGGAGGTTCGAAC 1 chrX:204554-204654 ( 3) AAAAAAAATCTCCGCGACGGGGAATTGAAC 1 chrXI:307929-308420 ( 11) AAAAAAAATTGATTTCGCCCAGGATCGAAC 1 chrV:438506-439014 ( 43) AAAAAAAATTGATTTCGCCCAGGATCGAAC 1 chrX:390806-390906 ( 17) ATAAAAATATGCTCCAGGGGAGGTTCGAAC 1 chrII:644969-645461 ( 53) AAAAAATAACTCCGATACGGGGAGTCGAAC 1 chrXIII:480381-480801 ( 71) AAAAAAAGAAGCCCTGTAGGGGGCTCGAAC 1 chrVII:185501-185942 ( 34) AAAAAAGATAGCCCTGTAGGGGGCTCGAAC 1 chrXII:214707-215062 ( 40) AAAAATAAATGGACGCAACCGGAATCGAAC 1 chrIV:1256756-1257275 ( 34) CACAAAAAATGCGGAAGCCGGGAATCGAAC 1 chrII:642769-643241 ( 43) AAAAAAAGAAGCTCGCACTCAGGATCGAAC 1 chrXII:426908-427461 ( 49) AAAAAAATTCTCCGCGACGGGGAATTGAAC 1 chrV:354690-355367 ( 7) AAAAAAGTACTCCGATACGGGGAGTCGAAC 1 chrV:176882-177445 ( 37) AAAAAAGTACTCCGATACGGGGAGTCGAAC 1 chrXII:975737-976177 ( 67) AAAAATAAACGACCCCAGTGAGGGTTGAAC 1 chrIX:336020-336622 ( 69) TAAAAAAATCTCCGCGACGGGGAATTGAAC 1 chrII:9374-10003 ( 8) AAAAAATACTGAAGGATGCGAGGTTCGAAC 1 chrXIV:725881-726328 ( 71) AAAAAATACTGAAGGATGCGAGGTTCGAAC 1 chrX:424225-424325 ( 8) AAAAAATACTGAAGGATGCGAGGTTCGAAC 1 chrVIII:358290-358746 ( 1) AAAAAAATATGCGAATTCTGTGGATCGAAC 1 chrII:36245-36780 ( 6) AAAAAAGAATGCGAATTCTGTGGATCGAAC 1 chrXIV:96009-96521 ( 17) CAAAAAATTTGAGCGGTACGAGAATCGAAC 1 chrIV:488425-489212 ( 20) AAAAGATTCTGATCCAACCGAGGTTCGAAC 1 chrX:414794-414894 ( 48) AAAAATATTAGCCCTGTAGGGGGCTCGAAC 1 chrXIII:290601-291148 ( 28) AAAAGAAGACTCCGATACGGGGAGTCGAAC 1 chrIII:127586-127970 ( 41) AAAAATTAACGACCCCAGTGAGGGTTGAAC 1 chrVII:774159-774733 ( 5) AAAAAAATTTGGACGAGTCCGGAATCGAAC 1 chrV:434389-434756 ( 10) AAAAGAAAATGCCATCTCCTAGAATCGAAC 1 chrXIII:320925-321317 ( 67) AATAAAAAATGGACGAGTCCGGAATCGAAC 1 chrIII:90863-91140 ( 1) AAAAAATAATGGTTGCTAAGAGATTCGAAC 1 chrXV:340091-340582 ( 4) AAAAAAAATCTTCCCCGCCAGGACTTGAAC 1 chrVII:422902-423519 ( 25) AAAAAATAATGGTTGCTAAGAGATTCGAAC 1 chrIV:1095145-1095664 ( 7) AAATAAAAATGCGAACTCTGTGGATCGAAC 1 chrXVI:744088-744579 ( 52) AAAAAATTTTGCCACCTGTCAGAATTGAAC 1 chrVII:541721-542150 ( 16) AAAAGAACACTCCGATACGGGGAGTCGAAC 1 chrXIII:372185-372653 ( 67) CTAAAAAAATGATTTCGCCCAGGATCGAAC 1 chrIV:1305408-1306073 ( 2) TAAAAATAACGACAACTGCAGGACTCGAAC 1 chrXVI:622234-622869 ( 30) AAAAATAAATGCGAATTCTGTGGATCGAAC 1 chrVII:730975-731434 ( 36) AGCAAAAAACGACCCCAGTGAGGGTTGAAC 1 chrXII:604945-605615 ( 61) AAGAGAAAGTGCTCGAGGTGGGGATTGAAC 1 chrV:130806-131414 ( 13) GAAAAAAATAGGTCTTACCCGGATTCGAAC 1 chrXV:464291-464855 ( 8) AAAATAAAAGGGGCGAGCTGGGAATTGAAC 1 chrXVI:768961-769472 ( 32) AGTAAAGAACTCCTCATAGGGGGCTCGAAC 1 chrXI:578743-579406 ( 16) AGTAAAGAACTCCTCATAGGGGGCTCGAAC 1 chrXII:628171-628816 ( 34) CAAAAATAATGGTTGCTAAGAGATTCGAAC 1 chrXI:140664-141438 ( 8) TAATGAAAACTCCGATACGGGGAGTCGAAC 1 chrIV:619704-620240 ( 38) ATAAAAAATCTTCCCCGCCAGGACTTGAAC 1 chrVII:823345-823732 ( 47) TTCAAAAAATGATTTCGCCCAGGATCGAAC 1 chrXVI:689413-689884 ( 28) AAAATAATACGACACCAGCAGGATTTGAAC 1 chrII:266198-266668 ( 47) TCAAAAAAATGCTTCCAATCGGATTTGAAC 1 chrXV:287796-288782 ( 21) AAAAAAATATCTCCCGGGGGCGAGTCGAAC 1 chrX:538433-538533 ( 51) AATAATCAACGTTCCGTACGGGACTCGAAC 1 chrVIII:115830-116409 ( 29) TGCAAAAAATGCTTCCAATCGGATTTGAAC 1 chrVII:287074-287614 ( 47) TATAAAAAATGAAACGGACAGGAATTGAAC 1 chrV:487071-487564 ( 55) TAACGAATACTCCGATACGGGGAGTCGAAC 1 chrII:347413-347928 ( 46) AAATATTACTGAAGGATGCGAGGTTCGAAC 1 chrIV:1150502-1151148 ( 58) AATAAAGTGCGTCACAGACAGGATTCGAAC 1 chrXV:300879-301496 ( 41) GTAAAAAAGGGGGCGAGCTGGGAATTGAAC 1 chrVII:779423-779939 ( 36) AAGTAATCTTGAGCGGTACGAGAATCGAAC 1 chrXIII:807986-808525 ( 32) ATGAAGGGAAGGTCCCACCCGGATTCGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAAYGMYCNMDMBGRGRWTCGAAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 9.35845 E= 1.9e-250 141 -178 -278 -134 149 -378 -178 -176 144 -178 -219 -176 163 -378 -1273 -234 152 -1273 -78 -334 152 -1273 -219 -153 105 -378 -46 -44 118 -278 -178 -34 108 -119 -178 -44 -134 61 -278 87 -1273 -378 195 -53 -25 131 -19 -202 -134 98 -19 5 -102 122 13 -88 -34 75 31 -76 -2 87 -19 -88 12 -1273 61 30 -9 122 13 -334 -276 103 68 -44 -176 47 161 -434 24 -378 151 -234 -1273 -1273 231 -1273 91 -1273 113 -1273 56 -46 -32 -25 -1273 -1273 -1273 175 -1273 192 -1273 -34 -1273 -1273 231 -1273 175 -1273 -1273 -1273 175 -1273 -1273 -1273 -1273 231 -1273 -1273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAAYGMYCNMDMBGRGRWTCGAAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 68 E= 1.9e-250 0.794118 0.058824 0.029412 0.117647 0.838235 0.014706 0.058824 0.088235 0.808824 0.058824 0.044118 0.088235 0.926471 0.014706 0.000000 0.058824 0.852941 0.000000 0.117647 0.029412 0.852941 0.000000 0.044118 0.102941 0.617647 0.014706 0.147059 0.220588 0.676471 0.029412 0.058824 0.235294 0.632353 0.088235 0.058824 0.220588 0.117647 0.308824 0.029412 0.544118 0.000000 0.014706 0.779412 0.205882 0.250000 0.500000 0.176471 0.073529 0.117647 0.397059 0.176471 0.308824 0.147059 0.470588 0.220588 0.161765 0.235294 0.338235 0.250000 0.176471 0.294118 0.367647 0.176471 0.161765 0.323529 0.000000 0.308824 0.367647 0.279412 0.470588 0.220588 0.029412 0.044118 0.411765 0.323529 0.220588 0.088235 0.279412 0.617647 0.014706 0.352941 0.014706 0.573529 0.058824 0.000000 0.000000 1.000000 0.000000 0.558824 0.000000 0.441176 0.000000 0.441176 0.147059 0.161765 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.764706 0.000000 0.235294 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAAYGMYCNMDMBGRGRWTCGAAC MEME-1 regular expression -------------------------------------------------------------------------------- AAAAAA[AT][AT][AT][TC][GT][CA][CT][CG][CGA][CA][TAG][CAG][CGT][GC][GA]G[AG][AT]T[CT]GAAC -------------------------------------------------------------------------------- Time 352.81 secs. ******************************************************************************** ******************************************************************************** MOTIF WGGKYBYDTGGYCTAGTGGKWWAAGSCNYC MEME-2 width = 30 sites = 39 llr = 725 E-value = 2.1e-099 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGGKYBYDTGGYCTAGTGGKWWAAGSCNYC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:111212:3:::1a:::::34662::312 pos.-specific C 2:22523::::562::11::1::2:46246 probability G 1a741414:7a:22:a:6a41:31642312 matrix T 5::43244a::525::93:6652132234: bits 2.3 * * * * 2.1 * * * * 1.8 * * * ** * 1.6 * * * ** * Relative 1.4 * *** *** * Entropy 1.2 ** **** *** * (26.8 bits) 0.9 ** ***** *** ** * 0.7 ** ***** ****** * * 0.5 **** ****** ****** ****** * 0.2 *************************** ** 0.0 ------------------------------ Multilevel TGGGCGTTTGGCCTAGTGGTTTAAGCCTCC consensus A CTTCCG A TGG T GAAGCTGGATA sequence T A G G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGKYBYDTGGYCTAGTGGKWWAAGSCNYC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrX:617728-617828 + 32 8.16e-14 CAACAAACAA TGGGAGTTTGGCCGAGTGGTTTAAGGCGTC AGATTTAGGT chrXII:592288-592990 - 2 8.16e-14 CAACATACAA TGGGAGTTTGGCCGAGTGGTTTAAGGCGTC A chrIX:183289-183718 - 32 6.42e-13 AACAAATTCC TGGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXIV:602091-602586 + 23 6.42e-13 CAGATAACAA TGGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXII:734642-734975 + 43 6.42e-13 CAACAAAGTT TGGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXII:92336-92725 + 67 8.69e-12 CAAGTTAATA AGGGCGTGTGGTCTAGTGGTATGATTCTCG CTTT chrXIV:546566-547698 + 11 1.02e-11 ACGAAATAAT CGGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrVI:101169-101560 + 61 1.02e-11 AACAATAATT CGGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrI:138968-139369 + 33 1.02e-11 TCAATTAGTA CGGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrVII:205333-205798 + 5 1.19e-11 TAAG TGGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrXIV:442768-443263 + 40 1.19e-11 AACAAATAAG TGGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrXII:656846-657200 - 5 1.38e-11 ACAAGAAAAT TGGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTT chrXI:219591-220156 + 71 2.50e-11 AACAGTAAAT AGGGCGTGTGGCGTAGTCGGTAGCGCGCTC chrXI:307929-308420 - 65 3.76e-10 ATTAAG TGGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrV:469164-469740 + 54 3.76e-10 AAGAAATAAT TGGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXII:962851-963251 - 26 9.05e-10 GTATTATCGA CGGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrIII:123380-123856 - 52 9.05e-10 TTTTCAAAGG AGGGCGTGTGGTCTAGAGGTATGATTCTCG CTTAGGGTGC chrXI:83997-84448 + 35 1.84e-09 AAAATTTGTA TGGAGGGTTGGCCGAGTGGTCTAATGCGGC AGACTTAAGA chrXV:226454-226880 - 36 1.84e-09 CAAGAAATTC AGCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVI:162026-162523 + 3 1.84e-09 CA AGCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXV:282003-282422 + 1 2.03e-09 . CGCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXIV:632418-632831 + 24 3.25e-09 GAATTTAAAG TGACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrXIV:96009-96521 - 69 3.56e-09 CA TGGGCGGTTAGTGTAGTGGTTATCATCCCA CCCTTCCAAG chrXV:228092-228576 + 46 4.65e-09 ATAAAATATT AGACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrXI:74403-74818 + 63 4.65e-09 TATAGCAATT AGACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTT chrXII:167767-168228 - 50 5.08e-09 AATAGTCATA TGGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrXV:110840-111186 - 42 5.54e-09 ACAATTAACC CGGGCGGTTAGTGTAGTGGTTATCATCCCA CCCTTCCAAG chrXV:353927-354305 - 19 6.03e-09 AACGGTTTAC TGCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrV:249775-250784 + 56 6.57e-09 ACAGTTGTAC TGGTCCTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrX:523738-523838 - 22 7.14e-09 AAGAGATTAA AGGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrIV:802561-802992 - 48 9.90e-09 CATGAATTGT CGGTCCTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrII:326569-327118 - 44 1.58e-08 ATCGAGTTCC GGGTCCAATGGTCCAGTGGTTCAAGACGTC GCCTTTACAC chrV:130806-131414 - 65 2.62e-08 ATTAAG AGGTTTTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrIII:227761-229195 - 38 5.75e-08 ATGTATCTAG AGCGCTGGTGGTGGAGTTGCATTATCTCCC AGAGCTGCTC chrII:350608-351063 + 41 6.49e-08 ATCAATAAAA GGGTTTTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrVIII:237766-238135 - 11 7.31e-08 ACAAATAGTA AGCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrXIV:374642-375129 + 33 7.31e-08 CAGAAAAATA AGCGGACTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrX:390806-390906 - 70 1.28e-07 G TGCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrVII:1003988-1004421 + 61 5.00e-07 TTCAAGGGTT TGCCTCCTTAGCTTAGTGGTAGAGCGTTGC ACTTGTAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGKYBYDTGGYCTAGTGGKWWAAGSCNYC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:617728-617828 8.2e-14 31_[+2]_39 chrXII:592288-592990 8.2e-14 1_[-2]_69 chrIX:183289-183718 6.4e-13 31_[-2]_39 chrXIV:602091-602586 6.4e-13 22_[+2]_48 chrXII:734642-734975 6.4e-13 42_[+2]_28 chrXII:92336-92725 8.7e-12 66_[+2]_4 chrXIV:546566-547698 1e-11 10_[+2]_60 chrVI:101169-101560 1e-11 60_[+2]_10 chrI:138968-139369 1e-11 32_[+2]_38 chrVII:205333-205798 1.2e-11 4_[+2]_66 chrXIV:442768-443263 1.2e-11 39_[+2]_31 chrXII:656846-657200 1.4e-11 4_[-2]_66 chrXI:219591-220156 2.5e-11 70_[+2] chrXI:307929-308420 3.8e-10 64_[-2]_6 chrV:469164-469740 3.8e-10 53_[+2]_17 chrXII:962851-963251 9.1e-10 25_[-2]_45 chrIII:123380-123856 9.1e-10 51_[-2]_19 chrXI:83997-84448 1.8e-09 34_[+2]_36 chrXV:226454-226880 1.8e-09 35_[-2]_35 chrVI:162026-162523 1.8e-09 2_[+2]_68 chrXV:282003-282422 2e-09 [+2]_70 chrXIV:632418-632831 3.2e-09 23_[+2]_47 chrXIV:96009-96521 3.6e-09 68_[-2]_2 chrXV:228092-228576 4.7e-09 45_[+2]_25 chrXI:74403-74818 4.7e-09 62_[+2]_8 chrXII:167767-168228 5.1e-09 49_[-2]_21 chrXV:110840-111186 5.5e-09 41_[-2]_29 chrXV:353927-354305 6e-09 18_[-2]_52 chrV:249775-250784 6.6e-09 55_[+2]_15 chrX:523738-523838 7.1e-09 21_[-2]_49 chrIV:802561-802992 9.9e-09 47_[-2]_23 chrII:326569-327118 1.6e-08 43_[-2]_27 chrV:130806-131414 2.6e-08 64_[-2]_6 chrIII:227761-229195 5.7e-08 37_[-2]_33 chrII:350608-351063 6.5e-08 40_[+2]_30 chrVIII:237766-238135 7.3e-08 10_[-2]_60 chrXIV:374642-375129 7.3e-08 32_[+2]_38 chrX:390806-390906 1.3e-07 69_[-2]_1 chrVII:1003988-1004421 5e-07 60_[+2]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGKYBYDTGGYCTAGTGGKWWAAGSCNYC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGGKYBYDTGGYCTAGTGGKWWAAGSCNYC width=30 seqs=39 chrX:617728-617828 ( 32) TGGGAGTTTGGCCGAGTGGTTTAAGGCGTC 1 chrXII:592288-592990 ( 2) TGGGAGTTTGGCCGAGTGGTTTAAGGCGTC 1 chrIX:183289-183718 ( 32) TGGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXIV:602091-602586 ( 23) TGGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXII:734642-734975 ( 43) TGGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXII:92336-92725 ( 67) AGGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrXIV:546566-547698 ( 11) CGGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrVI:101169-101560 ( 61) CGGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrI:138968-139369 ( 33) CGGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrVII:205333-205798 ( 5) TGGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrXIV:442768-443263 ( 40) TGGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrXII:656846-657200 ( 5) TGGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrXI:219591-220156 ( 71) AGGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrXI:307929-308420 ( 65) TGGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrV:469164-469740 ( 54) TGGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXII:962851-963251 ( 26) CGGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrIII:123380-123856 ( 52) AGGGCGTGTGGTCTAGAGGTATGATTCTCG 1 chrXI:83997-84448 ( 35) TGGAGGGTTGGCCGAGTGGTCTAATGCGGC 1 chrXV:226454-226880 ( 36) AGCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVI:162026-162523 ( 3) AGCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXV:282003-282422 ( 1) CGCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXIV:632418-632831 ( 24) TGACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXIV:96009-96521 ( 69) TGGGCGGTTAGTGTAGTGGTTATCATCCCA 1 chrXV:228092-228576 ( 46) AGACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXI:74403-74818 ( 63) AGACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXII:167767-168228 ( 50) TGGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrXV:110840-111186 ( 42) CGGGCGGTTAGTGTAGTGGTTATCATCCCA 1 chrXV:353927-354305 ( 19) TGCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrV:249775-250784 ( 56) TGGTCCTATAGTGTAGTGGTTATCACTTTC 1 chrX:523738-523838 ( 22) AGGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrIV:802561-802992 ( 48) CGGTCCTATAGTGTAGTGGTTATCACTTTC 1 chrII:326569-327118 ( 44) GGGTCCAATGGTCCAGTGGTTCAAGACGTC 1 chrV:130806-131414 ( 65) AGGTTTTATAGTGTAGTGGTTATCACTTTC 1 chrIII:227761-229195 ( 38) AGCGCTGGTGGTGGAGTTGCATTATCTCCC 1 chrII:350608-351063 ( 41) GGGTTTTATAGTGTAGTGGTTATCACTTTC 1 chrVIII:237766-238135 ( 11) AGCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrXIV:374642-375129 ( 33) AGCGGACTTAGCTCAGTTGGGAGAGCGCCA 1 chrX:390806-390906 ( 70) TGCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrVII:1003988-1004421 ( 61) TGCCTCCTTAGCTTAGTGGTAGAGCGTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGKYBYDTGGYCTAGTGGKWWAAGSCNYC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 9.49392 E= 2.1e-099 4 -17 -197 63 -1193 -1193 231 -1193 -195 19 178 -1193 -254 -39 111 27 -154 127 -98 4 -73 19 93 -54 -122 61 -65 55 -37 -1193 83 46 -1193 -1193 -1193 174 -22 -1193 188 -1193 -1193 -1193 231 -1193 -1193 142 -1193 63 -1193 155 19 -73 -154 -17 19 71 174 -1193 -1193 -1193 -1193 -1193 231 -1193 -354 -197 -1193 163 -354 -98 161 -22 -1193 -1193 231 -1193 -1193 -297 83 104 -8 -98 -197 92 55 -297 -297 78 92 -1193 35 -73 110 2 -98 -254 -95 -297 148 -22 -354 102 93 -73 -1193 167 2 -95 -22 2 35 -8 -122 111 -139 27 -54 155 2 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGKYBYDTGGYCTAGTGGKWWAAGSCNYC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 39 E= 2.1e-099 0.307692 0.179487 0.051282 0.461538 0.000000 0.000000 1.000000 0.000000 0.076923 0.230769 0.692308 0.000000 0.051282 0.153846 0.435897 0.358974 0.102564 0.487179 0.102564 0.307692 0.179487 0.230769 0.384615 0.205128 0.128205 0.307692 0.128205 0.435897 0.230769 0.000000 0.358974 0.410256 0.000000 0.000000 0.000000 1.000000 0.256410 0.000000 0.743590 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.538462 0.000000 0.461538 0.000000 0.589744 0.230769 0.179487 0.102564 0.179487 0.230769 0.487179 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.025641 0.051282 0.000000 0.923077 0.025641 0.102564 0.615385 0.256410 0.000000 0.000000 1.000000 0.000000 0.000000 0.025641 0.358974 0.615385 0.282051 0.102564 0.051282 0.564103 0.435897 0.025641 0.025641 0.512821 0.564103 0.000000 0.256410 0.179487 0.641026 0.205128 0.102564 0.051282 0.153846 0.025641 0.564103 0.256410 0.025641 0.410256 0.384615 0.179487 0.000000 0.641026 0.205128 0.153846 0.256410 0.205128 0.256410 0.282051 0.128205 0.435897 0.076923 0.358974 0.205128 0.589744 0.205128 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGKYBYDTGGYCTAGTGGKWWAAGSCNYC MEME-2 regular expression -------------------------------------------------------------------------------- [TA]G[GC][GT][CT][GCT][TC][TGA]T[GA]G[CT][CG][TG]AGT[GT]G[TG][TA][TA][AG][AC][GT][CG][CG][TAGC][CT][CAG] -------------------------------------------------------------------------------- Time 671.24 secs. ******************************************************************************** ******************************************************************************** MOTIF TADVRCGTCDSDCTWDYAAYSWGRAGRTCS MEME-3 width = 30 sites = 27 llr = 515 E-value = 9.8e-055 ******************************************************************************** -------------------------------------------------------------------------------- Motif TADVRCGTCDSDCTWDYAAYSWGRAGRTCS MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3a434:3:13:3:242:87::315a:5::2 pos.-specific C 1:14:a:171419:213:33621::1:284 probability G ::236:6:1463::131::14175:95::4 matrix T 6:3:::2913:2183361:5:41::1:82: bits 2.3 * 2.1 * 1.8 * * * * 1.6 * * * ** Relative 1.4 * * * * * ** * Entropy 1.2 * ** * * ** * ** ** (27.5 bits) 0.9 * ** * * ** ** * ******* 0.7 * ****** * ** **** ******** 0.5 ** ****** * ** ***** ******** 0.2 *********** ** ************** 0.0 ------------------------------ Multilevel TAACGCGTCGGACTAGTAATCTGGAGATCC consensus A TGA A TCG TTC CCGA A GCTG sequence GA A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TADVRCGTCDSDCTWDYAAYSWGRAGRTCS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrVIII:115830-116409 - 62 5.47e-12 CCAAGTTGG TAAGGCGCCACACTAGTAATGTGGAGATCA TCGGTTCAAA chrII:266198-266668 + 14 5.47e-12 GCCAAGTTGG TAAGGCGCCACACTAGTAATGTGGAGATCA TCGGTTCAAA chrIX:370226-370608 + 69 5.42e-11 GTGTAACGGC TATCACATCACGCTTTCACCGTGGAGACCG GG chrXI:140664-141438 - 40 5.42e-11 GTGTAACGGC TATCACATCACGCTTTCACCGTGGAGACCG GGGTTCGACT chrII:644969-645461 + 21 5.42e-11 GTGTAACGGC TATCACATCACGCTTTCACCGTGGAGACCG GGGTTCGACT chrV:176882-177445 + 5 5.42e-11 CGGC TATCACATCACGCTTTCACCGTGGAGACCG GGGTTCGACT chrXVI:210024-210483 - 12 5.42e-11 GTGTAACGGC TATCACATCACGCTTTCACCGTGGAGACCG GGGTTCGACT chrXIII:747737-748138 - 29 1.15e-10 GGCGTAATGG CAACGCGTCTGACTTCTAATCAGAAGATTA TGGGTTCGAC chrX:538433-538533 + 18 2.88e-10 GGCGTAATGG TAACGCGTCTCCCTCCTAAGGAGAAGACTG CGGGTTCGAG chrVII:440501-440990 - 45 4.44e-10 AGACTGAAGA AAAAACTTCGGTCAAGTTATCTGGAGGTCC TGTGTTCGAT chrVIII:358290-358746 - 34 4.44e-10 AGACTGAAGA AAAAACTTCGGTCAAGTTATCTGGAGGTCC TGTGTTCGAT chrXVI:622234-622869 - 63 4.44e-10 ACTGAAGA AAAAACTTCGGTCAAGTTATCTGGAGGTCC TGTGTTCGAT chrVIII:466814-467292 + 5 4.93e-10 GTGG TAGAGCGTTGCACTTGTAATGCAAAGGTCG CTAGTTCAAT chrXVI:744088-744579 + 19 4.93e-10 AGCTTAGTGG TAGAGCGTTGCACTTGTAATGCAAAGGTCG TTAGTTCAAT chrXV:340091-340582 - 37 6.71e-10 GCCCAATGGT CACGGCGTCTGGCTACGAACCAGAAGATTC CAGGTTCAAG chrIV:619704-620240 - 71 6.71e-10 . CACGGCGTCTGGCTACGAACCAGAAGATTC CAGGTTCAAG chrXIV:374642-375129 + 71 1.33e-09 CAGACTGAAG AAAAACTTCGGTCAAGTCATCTGGAGGTCC chrX:414794-414894 + 15 2.10e-09 GCGCAATCGG TAGCGCGTATGACTCTTAATCATAAGGTTA GGGGTTCGAG chrVII:185501-185942 - 67 2.10e-09 TCGG TAGCGCGTATGACTCTTAATCATAAGGTTA GGGGTTCGAG chrIV:488425-489212 - 53 2.50e-09 TCCAGTGGTT CAAGACGTCGCCTTTACACGGCGAAGATCC CGAGTTCGAA chrVII:730975-731434 + 3 4.50e-09 GT TAAGGCGTGCGACTGTTAATCGCAAGATCG TGAGTTCAAC chrIII:127586-127970 + 8 4.50e-09 AGTTGGT TAAGGCGTGCGACTGTTAATCGCAAGATCG TGAGTTCAAC chrXVI:338485-339347 - 6 6.67e-09 GGCGCAGTGG AAGCGCGCAGGGCTCATAACCCTGATGTCC TCGGA chrX:517656-517756 - 22 6.67e-09 GGCGCAGTGG AAGCGCGCAGGGCTCATAACCCTGATGTCC TCGGATCGAA chrV:438506-439014 + 10 1.12e-08 CTAGTCGGT TATGGCATCTGCTTAACACGCAGAACGTCC CCAGTTCGAT chrVII:823345-823732 + 14 1.12e-08 TCTAGTCGGT TATGGCATCTGCTTAACACGCAGAACGTCC CCAGTTCGAT chrIV:1095145-1095664 - 40 3.00e-08 AGACTGAAGA AAAAACTTTGGTCAAGATATCTGGAGGTCC TGTGTTCGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TADVRCGTCDSDCTWDYAAYSWGRAGRTCS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVIII:115830-116409 5.5e-12 61_[-3]_9 chrII:266198-266668 5.5e-12 13_[+3]_57 chrIX:370226-370608 5.4e-11 68_[+3]_2 chrXI:140664-141438 5.4e-11 39_[-3]_31 chrII:644969-645461 5.4e-11 20_[+3]_50 chrV:176882-177445 5.4e-11 4_[+3]_66 chrXVI:210024-210483 5.4e-11 11_[-3]_59 chrXIII:747737-748138 1.1e-10 28_[-3]_42 chrX:538433-538533 2.9e-10 17_[+3]_53 chrVII:440501-440990 4.4e-10 44_[-3]_26 chrVIII:358290-358746 4.4e-10 33_[-3]_37 chrXVI:622234-622869 4.4e-10 62_[-3]_8 chrVIII:466814-467292 4.9e-10 4_[+3]_66 chrXVI:744088-744579 4.9e-10 18_[+3]_52 chrXV:340091-340582 6.7e-10 36_[-3]_34 chrIV:619704-620240 6.7e-10 70_[-3] chrXIV:374642-375129 1.3e-09 70_[+3] chrX:414794-414894 2.1e-09 14_[+3]_56 chrVII:185501-185942 2.1e-09 66_[-3]_4 chrIV:488425-489212 2.5e-09 52_[-3]_18 chrVII:730975-731434 4.5e-09 2_[+3]_68 chrIII:127586-127970 4.5e-09 7_[+3]_63 chrXVI:338485-339347 6.7e-09 5_[-3]_65 chrX:517656-517756 6.7e-09 21_[-3]_49 chrV:438506-439014 1.1e-08 9_[+3]_61 chrVII:823345-823732 1.1e-08 13_[+3]_57 chrIV:1095145-1095664 3e-08 39_[-3]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TADVRCGTCDSDCTWDYAAYSWGRAGRTCS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TADVRCGTCDSDCTWDYAAYSWGRAGRTCS width=30 seqs=27 chrVIII:115830-116409 ( 62) TAAGGCGCCACACTAGTAATGTGGAGATCA 1 chrII:266198-266668 ( 14) TAAGGCGCCACACTAGTAATGTGGAGATCA 1 chrIX:370226-370608 ( 69) TATCACATCACGCTTTCACCGTGGAGACCG 1 chrXI:140664-141438 ( 40) TATCACATCACGCTTTCACCGTGGAGACCG 1 chrII:644969-645461 ( 21) TATCACATCACGCTTTCACCGTGGAGACCG 1 chrV:176882-177445 ( 5) TATCACATCACGCTTTCACCGTGGAGACCG 1 chrXVI:210024-210483 ( 12) TATCACATCACGCTTTCACCGTGGAGACCG 1 chrXIII:747737-748138 ( 29) CAACGCGTCTGACTTCTAATCAGAAGATTA 1 chrX:538433-538533 ( 18) TAACGCGTCTCCCTCCTAAGGAGAAGACTG 1 chrVII:440501-440990 ( 45) AAAAACTTCGGTCAAGTTATCTGGAGGTCC 1 chrVIII:358290-358746 ( 34) AAAAACTTCGGTCAAGTTATCTGGAGGTCC 1 chrXVI:622234-622869 ( 63) AAAAACTTCGGTCAAGTTATCTGGAGGTCC 1 chrVIII:466814-467292 ( 5) TAGAGCGTTGCACTTGTAATGCAAAGGTCG 1 chrXVI:744088-744579 ( 19) TAGAGCGTTGCACTTGTAATGCAAAGGTCG 1 chrXV:340091-340582 ( 37) CACGGCGTCTGGCTACGAACCAGAAGATTC 1 chrIV:619704-620240 ( 71) CACGGCGTCTGGCTACGAACCAGAAGATTC 1 chrXIV:374642-375129 ( 71) AAAAACTTCGGTCAAGTCATCTGGAGGTCC 1 chrX:414794-414894 ( 15) TAGCGCGTATGACTCTTAATCATAAGGTTA 1 chrVII:185501-185942 ( 67) TAGCGCGTATGACTCTTAATCATAAGGTTA 1 chrIV:488425-489212 ( 53) CAAGACGTCGCCTTTACACGGCGAAGATCC 1 chrVII:730975-731434 ( 3) TAAGGCGTGCGACTGTTAATCGCAAGATCG 1 chrIII:127586-127970 ( 8) TAAGGCGTGCGACTGTTAATCGCAAGATCG 1 chrXVI:338485-339347 ( 6) AAGCGCGCAGGGCTCATAACCCTGATGTCC 1 chrX:517656-517756 ( 22) AAGCGCGCAGGGCTCATAACCCTGATGTCC 1 chrV:438506-439014 ( 10) TATGGCATCTGCTTAACACGCAGAACGTCC 1 chrVII:823345-823732 ( 14) TATGGCATCTGCTTAACACGCAGAACGTCC 1 chrIV:1095145-1095664 ( 40) AAAAACTTTGGTCAAGATATCTGGAGGTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TADVRCGTCDSDCTWDYAAYSWGRAGRTCS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.4233 E= 9.8e-055 -20 -44 -1140 99 174 -1140 -1140 -1140 58 -144 14 -20 -20 101 72 -1140 45 -1140 155 -1140 -1140 231 -1140 -1140 -20 -1140 146 -69 -1140 -44 -1140 151 -101 172 -144 -142 -20 -144 88 -1 -1140 101 155 -1140 16 -44 72 -69 -1140 214 -1140 -142 -69 -1140 -1140 145 45 -12 -144 16 -69 -44 72 16 -301 55 -144 99 145 -244 -1140 -101 124 55 -1140 -1140 -1140 72 -44 80 -1140 155 101 -1140 -1 -12 -144 58 -201 -144 180 -101 69 -1140 136 -1140 174 -1140 -1140 -1140 -1140 -144 208 -201 80 -1140 125 -1140 -1140 14 -1140 138 -1140 195 -1140 -42 -69 114 88 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TADVRCGTCDSDCTWDYAAYSWGRAGRTCS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 27 E= 9.8e-055 0.259259 0.148148 0.000000 0.592593 1.000000 0.000000 0.000000 0.000000 0.444444 0.074074 0.222222 0.259259 0.259259 0.407407 0.333333 0.000000 0.407407 0.000000 0.592593 0.000000 0.000000 1.000000 0.000000 0.000000 0.259259 0.000000 0.555556 0.185185 0.000000 0.148148 0.000000 0.851852 0.148148 0.666667 0.074074 0.111111 0.259259 0.074074 0.370370 0.296296 0.000000 0.407407 0.592593 0.000000 0.333333 0.148148 0.333333 0.185185 0.000000 0.888889 0.000000 0.111111 0.185185 0.000000 0.000000 0.814815 0.407407 0.185185 0.074074 0.333333 0.185185 0.148148 0.333333 0.333333 0.037037 0.296296 0.074074 0.592593 0.814815 0.037037 0.000000 0.148148 0.703704 0.296296 0.000000 0.000000 0.000000 0.333333 0.148148 0.518519 0.000000 0.592593 0.407407 0.000000 0.296296 0.185185 0.074074 0.444444 0.074074 0.074074 0.703704 0.148148 0.481481 0.000000 0.518519 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.851852 0.074074 0.518519 0.000000 0.481481 0.000000 0.000000 0.222222 0.000000 0.777778 0.000000 0.777778 0.000000 0.222222 0.185185 0.444444 0.370370 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TADVRCGTCDSDCTWDYAAYSWGRAGRTCS MEME-3 regular expression -------------------------------------------------------------------------------- [TA]A[ATG][CGA][GA]C[GA]TC[GTA][GC][AG]CT[AT][GT][TC]A[AC][TC][CG][TA]G[GA]AG[AG][TC][CT][CG] -------------------------------------------------------------------------------- Time 984.01 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:347413-347928 2.17e-05 45_[-1(2.19e-08)]_25 chrVIII:471406-472393 3.90e-01 100 chrXV:159154-160150 3.98e-03 54_[-3(3.74e-05)]_16 chrVII:319253-320144 9.41e-01 100 chrXI:430621-432287 9.85e-01 100 chrI:166177-166616 8.70e-01 100 chrIV:1278062-1279962 2.53e-01 100 chrXVI:819322-819970 9.96e-01 100 chrXIII:807986-808525 3.15e-05 31_[+1(5.14e-08)]_39 chrVII:609249-611485 9.76e-01 100 chrVII:515722-519001 8.09e-01 100 chrXI:578743-579406 1.12e-05 15_[-1(2.52e-09)]_55 chrIV:619704-620240 2.47e-11 37_[+1(4.73e-09)]_3_[-3(6.71e-10)] chrIII:127586-127970 1.35e-11 7_[+3(4.50e-09)]_3_[-1(4.13e-10)]_\ 30 chrXVI:431655-434388 1.99e-01 100 chrIV:980703-981161 8.66e-01 100 chrXII:197774-199718 4.75e-01 100 chrIX:300003-300644 7.03e-01 100 chrXIV:632418-632831 7.55e-12 23_[+2(3.25e-09)]_47 chrIV:884280-884949 5.87e-01 100 chrXII:645814-646255 7.80e-01 100 chrIX:265806-268300 8.56e-01 100 chrII:301123-301708 7.82e-01 100 chrXII:47481-49217 9.59e-01 100 chrXVI:210024-210483 1.56e-07 11_[-3(5.42e-11)]_59 chrVII:519332-521090 2.79e-01 100 chrXV:836590-837075 1.05e-01 100 chrXII:368922-369459 1.24e-01 40_[+2(6.89e-05)]_30 chrVII:999825-1000707 6.15e-01 100 chrXV:899766-901649 6.93e-01 100 chrXIII:290601-291148 6.12e-06 27_[-1(4.13e-10)]_43 chrV:176882-177445 5.41e-14 4_[+3(5.42e-11)]_2_[-1(7.20e-11)]_\ 34 chrXVI:577568-578636 2.15e-01 100 chrII:426155-427467 6.12e-01 100 chrIV:635726-636520 9.43e-01 100 chrXV:778090-778432 8.91e-01 100 chrIV:802561-802992 1.04e-06 47_[-2(9.90e-09)]_23 chrXIV:61996-64792 9.69e-01 100 chrVII:227239-228740 8.45e-01 100 chrXII:930366-930910 1.75e-01 100 chrI:71131-73622 2.78e-01 100 chrX:663122-663222 4.01e-01 100 chrVII:411490-412557 3.75e-01 100 chrX:73429-73529 9.93e-01 100 chrXIII:19037-21517 3.61e-01 100 chrXIII:387458-389800 1.49e-01 100 chrXIV:413500-414930 8.83e-02 100 chrXV:68282-69883 8.45e-01 100 chrII:266198-266668 4.72e-13 13_[+3(5.47e-12)]_3_[-1(8.56e-09)]_\ 24 chrXVI:731634-732755 1.12e-01 100 chrXIII:253109-253692 4.81e-01 100 chrIV:1410327-1411197 9.68e-01 100 chrXV:721919-724771 5.08e-01 100 chrXIII:372185-372653 5.59e-06 66_[+1(9.56e-10)]_4 chrVII:1057756-1058795 3.71e-02 100 chrXII:214707-215062 4.81e-07 39_[+1(3.32e-11)]_31 chrX:525932-526032 7.94e-01 100 chrVII:122055-123322 9.89e-01 100 chrXVI:339602-340925 3.99e-01 100 chrVI:191146-191774 4.05e-01 100 chrXI:517792-521777 8.20e-01 100 chrXII:1028153-1028934 6.54e-01 100 chrXII:281898-282484 6.89e-01 100 chrXI:258062-260001 8.28e-01 100 chrV:241971-242772 3.32e-02 100 chrIV:926354-927288 2.52e-01 100 chrVII:328417-328999 9.13e-01 100 chrXIII:504918-505233 3.90e-01 100 chrXIV:302510-303882 7.10e-02 100 chrXIII:225177-226623 5.42e-01 100 chrXII:720627-721399 4.13e-01 100 chrVIII:115830-116409 8.62e-13 28_[+1(1.62e-08)]_3_[-3(5.47e-12)]_\ 9 chrXI:322433-322962 5.83e-01 100 chrII:158715-160690 5.08e-01 100 chrXIII:159144-159766 6.74e-01 100 chrIII:82411-82676 5.35e-01 100 chrV:287184-287598 2.29e-01 100 chrXII:656846-657200 2.15e-07 4_[-2(1.38e-11)]_66 chrIV:1013417-1014220 3.74e-01 100 chrXII:423666-425455 1.59e-01 100 chrVII:345666-346677 7.48e-01 100 chrXVI:482166-482348 4.58e-01 100 chrVI:162026-162523 8.38e-14 2_[+2(1.84e-09)]_21_[-1(8.14e-12)]_\ 17 chrXV:31059-31207 2.70e-01 100 chrVII:902531-903150 8.30e-01 100 chrXII:628171-628816 4.92e-05 33_[-1(4.33e-09)]_37 chrXVI:426182-426344 8.57e-01 100 chrXIII:91012-92114 5.97e-01 100 chrXV:1003413-1004981 5.77e-01 100 chrVIII:174511-176413 9.43e-01 100 chrVII:185501-185942 1.60e-13 33_[+1(3.32e-11)]_3_[-3(2.10e-09)]_\ 4 chrXI:219591-220156 1.86e-07 70_[+2(2.50e-11)] chrXVI:55864-56413 3.40e-01 100 chrIV:215781-216279 5.39e-01 100 chrXV:287796-288782 3.01e-06 20_[-1(1.18e-08)]_50 chrVII:794190-794559 8.61e-01 100 chrXVI:302686-304291 1.13e-02 [+1(4.59e-05)]_70 chrXII:723263-723633 1.71e-01 100 chrXVI:794482-796183 8.80e-01 100 chrX:35888-35988 9.32e-01 100 chrV:550864-551575 7.49e-01 100 chrIII:123380-123856 1.42e-07 51_[-2(9.05e-10)]_19 chrXVI:581876-582518 3.63e-01 100 chrXIII:170002-171245 3.91e-01 100 chrXII:553757-554268 9.99e-01 100 chrII:611936-614851 4.29e-01 100 chrVIII:147877-149258 9.40e-01 100 chrXVI:879453-880557 1.60e-01 100 chrXIII:195938-196297 3.88e-01 100 chrXV:226454-226880 2.13e-05 35_[-2(1.84e-09)]_35 chrXIII:287768-290013 5.44e-01 100 chrIV:1428467-1429902 7.33e-01 100 chrV:490936-492542 6.85e-01 100 chrVII:23871-25444 6.20e-01 100 chrIX:336020-336622 2.19e-06 68_[+1(1.49e-10)]_2 chrXVI:927914-928297 7.17e-02 37_[-3(7.63e-05)]_33 chrXV:710128-710678 1.54e-02 20_[+1(7.65e-05)]_50 chrXIII:123009-124527 6.29e-01 100 chrIV:1401296-1403448 2.09e-01 100 chrXV:571728-572119 8.05e-01 100 chrVII:806114-808233 3.41e-01 100 chrXIII:759799-763170 1.91e-01 100 chrVIII:410725-411674 9.67e-01 100 chrIV:520711-521160 3.99e-01 100 chrV:305836-307684 2.37e-01 100 chrVII:561456-561713 4.59e-01 100 chrXV:1041817-1042756 7.44e-01 100 chrXIV:6619-7013 2.05e-02 5_[-2(1.16e-05)]_65 chrXV:908427-912708 7.67e-01 100 chrX:639277-639377 7.11e-01 100 chrVII:726270-728166 9.62e-01 100 chrIII:68405-68794 1.50e-01 100 chrXII:783647-784723 2.29e-01 100 chrXII:447973-448846 2.38e-01 100 chrXVI:744088-744579 5.41e-13 18_[+3(4.93e-10)]_3_[-1(6.33e-10)]_\ 19 chrXIII:768173-768440 9.69e-01 100 chrXIV:568056-568763 5.11e-01 100 chrIV:1095145-1095664 1.29e-11 6_[+1(5.70e-10)]_3_[-3(3.00e-08)]_\ 31 chrVII:592105-593248 4.37e-01 100 chrXI:666432-666776 2.68e-01 100 chrXI:463386-465034 2.35e-01 100 chrII:332294-332905 4.55e-01 100 chrXII:92336-92725 1.56e-07 66_[+2(8.69e-12)]_4 chrII:373080-374942 1.82e-01 100 chrIV:929257-930785 9.31e-01 100 chrIV:680198-680732 7.90e-01 100 chrVII:541721-542150 6.77e-06 15_[-1(8.64e-10)]_55 chrX:650872-650972 3.05e-01 100 chrIV:309792-310969 5.14e-01 100 chrVIII:98347-98902 6.30e-01 100 chrXIV:229568-230836 8.52e-02 100 chrVIII:34393-36189 3.67e-01 100 chrXIII:625835-627339 4.95e-01 100 chrXIII:168183-169041 4.39e-01 100 chrVIII:422610-423947 4.82e-01 100 chrV:166846-167700 6.62e-01 100 chrVII:640669-642384 2.34e-01 100 chrX:156550-156650 9.21e-01 100 chrIV:221127-222324 4.69e-01 100 chrIV:28-343 1.96e-01 100 chrIII:176755-179466 9.76e-01 100 chrII:478964-479410 6.95e-01 100 chrVI:64018-65346 8.47e-01 100 chrIII:148927-149155 7.39e-01 100 chrIV:1269841-1271132 1.90e-01 100 chrXII:592288-592990 1.36e-09 1_[-2(8.16e-14)]_69 chrXIII:145724-147216 7.13e-01 100 chrIV:264577-265575 5.11e-01 100 chrX:607925-608025 1.77e-01 100 chrIV:541282-542037 2.72e-01 100 chrX:348833-348933 5.95e-01 100 chrXV:252821-254706 4.78e-01 100 chrXI:512952-513574 8.18e-01 100 chrXIV:330781-331663 1.84e-01 100 chrVIII:145810-146457 4.98e-01 100 chrXIV:663063-664091 9.28e-01 100 chrX:517656-517756 2.13e-06 21_[-3(6.67e-09)]_49 chrIV:992698-993223 3.34e-01 100 chrX:414794-414894 1.64e-12 14_[+3(2.10e-09)]_3_[-1(4.13e-10)]_\ 23 chrIV:568710-569275 1.31e-01 100 chrII:477050-477774 2.27e-01 100 chrXVI:821571-824222 8.87e-02 24_[+1(5.04e-05)]_46 chrV:310702-312281 1.56e-01 100 chrIV:1451348-1451681 8.28e-01 100 chrXVI:810582-811321 6.17e-01 100 chrXV:758832-760536 1.50e-01 100 chrXI:158230-159819 1.77e-01 100 chrXV:216294-216813 4.77e-01 100 chrIX:174732-175559 6.17e-01 100 chrIV:381661-384836 4.51e-02 100 chrIV:1354745-1355962 1.69e-01 100 chrVII:920153-920791 5.68e-01 100 chrXII:931085-932593 7.21e-01 100 chrXII:167767-168228 5.83e-06 49_[-2(5.08e-09)]_21 chrXVI:174644-175070 5.11e-02 60_[-3(6.01e-05)]_10 chrVIII:76094-76305 1.19e-01 100 chrXV:110840-111186 1.12e-05 41_[-2(5.54e-09)]_29 chrX:542786-542886 6.08e-02 47_[-2(6.89e-05)]_23 chrVIII:189989-191518 5.31e-01 100 chrX:391481-391581 6.25e-01 100 chrXV:135839-137202 4.17e-01 100 chrXIV:65322-66283 9.00e-01 100 chrII:642769-643241 7.51e-07 42_[+1(3.79e-11)]_28 chrXIV:585342-586517 7.06e-01 100 chrVII:531432-531808 1.20e-01 100 chrIV:1161738-1165279 3.40e-01 100 chrV:430966-432068 6.85e-01 100 chrIV:1488967-1490765 7.19e-01 100 chrVII:422902-423519 5.81e-06 24_[-1(5.70e-10)]_46 chrXIV:661871-662565 1.93e-01 100 chrXVI:481459-482000 3.61e-02 58_[-2(4.15e-05)]_12 chrIII:107065-108278 5.15e-01 100 chrII:87821-88567 1.89e-01 100 chrXII:497950-499781 8.65e-01 100 chrXV:353927-354305 6.14e-06 18_[-2(6.03e-09)]_52 chrXII:1029112-1030271 4.26e-01 100 chrXII:1017633-1019531 5.39e-01 100 chrXVI:403497-406016 6.88e-01 100 chrXII:83870-84421 7.18e-01 100 chrXV:340091-340582 1.02e-12 3_[+1(5.70e-10)]_3_[-3(6.71e-10)]_\ 34 chrXIII:747737-748138 3.88e-08 28_[-3(1.15e-10)]_42 chrXI:74403-74818 1.36e-05 62_[+2(4.65e-09)]_8 chrXVI:622234-622869 1.09e-12 29_[+1(1.06e-09)]_3_[-3(4.44e-10)]_\ 8 chrXV:1048960-1049334 3.04e-01 100 chrX:293760-293860 5.92e-01 100 chrXIII:914927-915572 9.52e-01 100 chrIV:416947-417338 6.85e-01 100 chrXII:818507-819685 9.47e-01 100 chrIV:578862-580745 3.34e-01 100 chrIV:635162-635536 9.97e-01 100 chrVII:405467-406007 8.46e-01 100 chrXV:967974-968515 8.19e-02 100 chrVII:483294-483697 5.72e-01 100 chrXV:853965-854833 3.35e-01 100 chrXII:328263-330214 6.24e-03 32_[-1(4.05e-05)]_38 chrV:483022-484177 9.06e-01 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chrXVI:134807-135868 1.75e-01 100 chrX:204554-204654 2.16e-07 2_[-1(1.45e-11)]_68 chrXIII:732036-733577 1.76e-01 100 chrV:191935-192638 7.30e-02 100 chrXI:380901-382470 3.76e-01 100 chrVII:774159-774733 5.24e-06 4_[-1(4.61e-10)]_66 chrXII:837570-839754 9.17e-01 100 chrX:415734-415834 5.27e-01 100 chrXV:1027759-1029078 1.74e-01 100 chrIV:976435-977298 4.59e-01 100 chrV:41999-42678 4.16e-01 100 chrIV:758798-759647 4.63e-01 100 chrXIII:873384-874187 7.89e-01 100 chrVIII:237766-238135 3.70e-04 10_[-2(7.31e-08)]_60 chrXVI:665661-666477 9.87e-01 100 chrVI:222752-224141 8.23e-02 100 chrVIII:103633-105527 7.93e-01 100 chrXII:1011647-1013688 9.04e-01 100 chrIV:306668-309550 7.85e-01 100 chrVII:1003988-1004421 1.43e-04 60_[+2(5.00e-07)]_10 chrXIV:348980-350636 3.81e-01 100 chrXII:636615-640191 3.21e-01 100 chrXII:514040-517036 2.57e-01 100 chrXII:805314-807122 2.36e-01 100 chrIV:1328520-1329513 6.14e-02 100 chrXIII:480381-480801 1.42e-07 70_[+1(2.90e-11)] chrXV:505045-506732 4.70e-01 100 chrXII:521651-523808 3.19e-01 100 chrIV:1239331-1240142 7.80e-01 100 chrXI:558669-559860 8.35e-01 100 chrXIII:271404-272654 5.25e-01 100 chrXV:28407-30866 6.29e-01 100 chrIV:1266300-1267189 5.74e-01 100 chrXIV:507261-507470 5.18e-01 100 chrVI:220063-222438 9.40e-01 100 chrX:120294-120394 1.39e-01 100 chrXIII:320925-321317 3.23e-06 66_[+1(5.13e-10)]_4 chrXVI:338485-339347 7.32e-06 5_[-3(6.67e-09)]_65 chrXIII:305944-307260 7.49e-01 100 chrII:255074-257970 6.24e-01 100 chrV:460525-462876 7.20e-01 100 chrII:9374-10003 1.58e-06 7_[-1(2.97e-10)]_63 chrXI:302720-303220 2.60e-01 100 chrIV:45182-46223 2.82e-02 100 chrVII:648759-649342 8.46e-01 100 chrIX:197365-197793 3.54e-01 100 chrIV:83441-83977 6.47e-01 100 chrXIV:426854-427640 6.23e-01 100 chrI:65942-67867 4.55e-03 7_[+1(1.11e-05)]_63 chrIX:231812-233196 1.16e-01 100 chrXI:163386-165489 4.11e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************