# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SRB8/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SRB8/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SRB8/seqs-shuffled
#   positives: 799 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SRB8/seqs-centered (Sat Jan 18 04:57:32 PST 2020)
#   negatives: 799 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SRB8/seqs-shuffled (Sat Jan 18 04:57:32 PST 2020)
#        host: kali.stanford.edu
#        when: Sat Jan 18 05:14:01 PST 2020

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.293 C 0.204 G 0.208 T 0.295


MOTIF GGWTCGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GGWTCGA    TCGAWCC         87          9   2.5e-018   8.9e-014
#          GGTTCGA    TCGAACC         68          5   4.7e-016   1.7e-011
#          GGATCGA    TCGATCC         24          4   8.0e-005   2.9e+000

letter-probability matrix: alength= 4 w= 7 nsites= 87 E= 8.9e-014
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.252874 0.000000 0.000000 0.747126
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TRGTAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      TRGTAA     TTACYA        137         57   4.5e-010   1.6e-005
#           TGGTAA     TTACCA         73         23   6.8e-008   2.5e-003
#           TAGTAA     TTACTA         71         36   3.0e-004   1.1e+001

letter-probability matrix: alength= 4 w= 6 nsites= 149 E= 1.6e-005
0.000000 0.000000 0.000000 1.000000
0.489933 0.000000 0.510067 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAARWAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAARWAA   TTWYTTTT        154         75   9.8e-009   3.5e-004
#         AAAAATAA   TTATTTTT         52         19   3.9e-005   1.4e+000
#         AAAAAAAA   TTTTTTTT         67         37   1.6e-003   5.6e+001
#         AAAAGTAA   TTACTTTT         22          6   1.7e-003   6.2e+001
#         AAAAGAAA   TTTCTTTT         40         20   5.9e-003   2.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 184 E= 3.5e-004
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.663043 0.000000 0.336957 0.000000
0.603261 0.000000 0.000000 0.396739
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 21.11 seconds