******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SFL1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:350625-351065 1.0000 100 chrVIII:48265-48610 1.0000 100 chrXV:31491-31896 1.0000 100 chrVII:88106-89271 1.0000 100 chrXI:146779-147462 1.0000 100 chrI:166191-166604 1.0000 100 chrIV:1344789-1346025 1.0000 100 chrXVI:828880-829362 1.0000 100 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1.0000 100 chrV:61051-62153 1.0000 100 chrII:478953-479555 1.0000 100 chrXV:867010-868156 1.0000 100 chrIV:411345-411531 1.0000 100 chrVII:938972-939735 1.0000 100 chrVI:101183-101846 1.0000 100 chrXV:758933-759572 1.0000 100 chrVIII:388649-388972 1.0000 100 chrV:306316-306933 1.0000 100 chrXII:424052-424731 1.0000 100 chrXIII:195938-196284 1.0000 100 chrXV:722797-724730 1.0000 100 chrII:413749-415330 1.0000 100 chrXIV:499588-500772 1.0000 100 chrIV:1362035-1362938 1.0000 100 chrVIII:422907-423811 1.0000 100 chrXII:721770-722404 1.0000 100 chrIV:1245686-1246179 1.0000 100 chrXIV:234254-235705 1.0000 100 chrVII:544414-544922 1.0000 100 chrVII:846905-848385 1.0000 100 chrIX:380132-381733 1.0000 100 chrXIII:115527-115832 1.0000 100 chrXI:379709-381360 1.0000 100 chrVII:227253-228380 1.0000 100 chrII:59577-60793 1.0000 100 chrXII:522621-523708 1.0000 100 chrII:555870-558202 1.0000 100 chrXIII:372184-372637 1.0000 100 chrIV:221069-222353 1.0000 100 chrXIV:666326-667156 1.0000 100 chrXIV:771668-772400 1.0000 100 chrIV:322181-323646 1.0000 100 chrXV:832264-832864 1.0000 100 chrXI:231053-231672 1.0000 100 chrVI:95474-95894 1.0000 100 chrVII:1048676-1051583 1.0000 100 chrX:605867-605967 1.0000 100 chrXI:208177-209359 1.0000 100 chrXVI:555327-556355 1.0000 100 chrXV:882698-884167 1.0000 100 chrVIII:379316-380285 1.0000 100 chrVII:366211-366720 1.0000 100 chrIV:758464-759645 1.0000 100 chrXIII:408390-408859 1.0000 100 chrVIII:145401-146453 1.0000 100 chrXVI:678554-679401 1.0000 100 chrXV:896701-898367 1.0000 100 chrVII:968832-969205 1.0000 100 chrV:77502-79970 1.0000 100 chrIV:410030-410790 1.0000 100 chrVIII:16556-18231 1.0000 100 chrXIII:747784-748309 1.0000 100 chrVII:930606-931172 1.0000 100 chrI:71716-73693 1.0000 100 chrXI:457863-458960 1.0000 100 chrXIV:495290-495766 1.0000 100 chrXII:96079-96293 1.0000 100 chrVIII:236321-236857 1.0000 100 chrI:190183-190550 1.0000 100 chrXIII:768199-768411 1.0000 100 chrXIII:873848-874335 1.0000 100 chrVII:730978-731402 1.0000 100 chrIV:229826-231142 1.0000 100 chrIV:1354396-1355601 1.0000 100 chrVII:94291-94732 1.0000 100 chrII:236497-237463 1.0000 100 chrVII:437079-438273 1.0000 100 chrXIII:701724-703311 1.0000 100 chrXI:578771-579592 1.0000 100 chrV:241957-242304 1.0000 100 chrX:415800-415900 1.0000 100 chrX:453337-453437 1.0000 100 chrXV:282012-282529 1.0000 100 chrXI:109225-110477 1.0000 100 chrII:642854-643234 1.0000 100 chrXIV:602093-602534 1.0000 100 chrVII:149227-149398 1.0000 100 chrVII:609317-610090 1.0000 100 chrVII:438965-440080 1.0000 100 chrVII:21648-22128 1.0000 100 chrXII:92428-92712 1.0000 100 chrXII:374220-374766 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SFL1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SFL1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SFL1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SFL1/background): A 0.308 C 0.192 G 0.192 T 0.308 ******************************************************************************** ******************************************************************************** MOTIF RGGTCCBSGGTTCGATYCYSVGYKBGVGC MEME-1 width = 29 sites = 56 llr = 1068 E-value = 4.4e-187 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGGTCCBSGGTTCGATYCYSVGYKBGVGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5233:2:131:::3a2:::12:2112313 pos.-specific C 11:196431:::a::24965324122326 probability G 367::23679:::8:1::1446:445451 matrix T :1:61:31::aa:::5613::2432112: bits 2.4 * 2.1 * * * 1.9 * * * 1.7 * **** * * Relative 1.4 * ****** * Entropy 1.2 * ****** * (27.5 bits) 1.0 * * ******* ** * * 0.7 ** ** ******** ****** * 0.5 *************** ******* **** 0.2 ***************************** 0.0 ----------------------------- Multilevel AGGTCCCGGGTTCGATTCCCGGCGGGGGC consensus G AA GCA A C TGC TTC ACA sequence T A T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGTCCBSGGTTCGATYCYSVGYKBGVGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIV:631546-632136 - 56 7.13e-15 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCGGCTCGCCC CCATTGATTT chrXVI:860121-860696 + 62 2.06e-14 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC AGATTTTATT chrX:531607-531707 + 9 2.06e-14 CCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC AGTTTCTTTT chrIV:83449-83811 + 9 2.06e-14 CCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC AAGTTTAATT chrIV:992707-993031 + 54 2.06e-14 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC ACTTTTTTAG chrVII:845294-846102 + 42 2.06e-14 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC AATGTTTTTT chrIV:1075279-1075748 - 10 7.99e-13 CACACGGCAA AGGTCCCGAGTTCGATCCTCGGTTGGAAC ATTTGTTTT chrXIII:195938-196284 - 8 2.81e-12 AGCATGCGAG AGGCCCTGGGTTCAATTCCCAGCTCGCCC CTTTTTT chrXV:464300-464791 + 27 2.81e-12 AGCATGCGAG AGGCCCTGGGTTCAATTCCCAGCTCGCCC CTTTTATTTT chrII:326514-327034 - 69 1.19e-11 CGA AGATCCCGAGTTCGAACCTCGGTTGGATC AAACTCTTTA chrIV:488435-489206 - 28 1.19e-11 TACACGGCGA AGATCCCGAGTTCGAACCTCGGTTGGATC AGAATCTTTT chrIV:1016922-1017477 - 59 1.37e-11 TCTCACCGTG GAGACCGGGGTTCGACTCCCCGCTTCGGA GTTTCTTTTT chrV:311718-312311 - 60 5.73e-11 TGCAAGGAAG AGGTCATCGGTTCGATTCCGGTTGCGTCC AATGAAATCT chrXII:214690-215042 - 68 5.73e-11 GAAG AGGTCATCGGTTCGATTCCGGTTGCGTCC ATTTATTTTT chrVII:779438-779924 + 27 9.35e-11 TTCCAAGGTG GGGACACGGGTTCGATTCTCGTACCGCTC AAGATTACTT chrXIV:96028-96509 - 24 9.35e-11 TTCCAAGGTG GGGACACGGGTTCGATTCTCGTACCGCTC AAATTTTTTG chrVII:541733-542120 + 16 1.19e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGA GTGTTCTTTT chrIV:644922-645362 - 62 1.19e-10 TTTGATCCGG ACAACCCCGGTTCGAATCCGGGTAGGACC TTTTTTAACT chrXII:796975-797521 + 22 1.19e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGA GATATATTTA chrV:354677-355322 + 27 1.19e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGA GTACTTTTTT chrV:176914-177428 + 20 1.19e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGA GTACTTTTTT chrX:378260-378360 + 49 1.89e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATC AATTTTTTGT chrXIV:569655-570150 - 16 1.89e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACC ATTCTTTTTT chrII:197305-197785 + 43 1.89e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACC ATTTTTTTGC chrXI:307894-308403 - 47 1.89e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATC AATTTTTTTT chrVII:823360-823686 + 53 1.89e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATC ATTTTTTGAA chrXIII:586420-586909 - 23 1.89e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATC ATTTTTTTGA chrIV:1175655-1176067 + 61 2.12e-10 CATAATCTGA AGGTCGAGAGTTCGAACCTCCCCTGGAGC ATTTTTGCCG chrII:642854-643234 - 14 4.60e-10 GCAAATCTGT TGGTCCTTAGTTCGATCCTGAGTGCGAGC TTCTTTTTTT chrXVI:435623-436189 - 38 4.60e-10 GCAAATCTGT TGGTCCTTAGTTCGATCCTGAGTGCGAGC TTTCTTTTTT chrIV:884284-884738 + 3 1.06e-09 GA CCGTCGTGGGTTCAAACCCCACCTCGAGC ACTTTCTCTT chrVII:730978-731402 + 41 1.17e-09 GTTAATCGCA AGATCGTGAGTTCAACCCTCACTGGGGTC GTTTTTTGCT chrXIV:632434-632912 + 20 1.17e-09 GTTAATCGCA AGATCGTGAGTTCAACCCTCACTGGGGTC GTTTTTTTTC chrX:355205-355305 + 72 2.33e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGA chrIX:336144-336618 - 19 2.33e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTTTTA chrX:204553-204653 + 47 2.33e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTTTTT chrII:266230-266711 + 1 2.33e-09 . AGATCATCGGTTCAAATCCGATTGGAAGC ATTTTTTTGA chrXII:875240-875637 + 54 2.56e-09 GGATACCGAA ATGTCAGGGGTTCGAGCCCCCTATGAGGA GTTCTTTACT chrXVI:769004-769436 - 38 2.56e-09 GGATACCGAA ATGTCAGGGGTTCGAGCCCCCTATGAGGA GTTCTTTACT chrIV:410030-410790 + 62 3.71e-09 AGCATGGGAG AGGTCTCCGGTTCGATTCCGGACTCGTCC AAATTATTTT chrVII:1004069-1004404 + 72 5.34e-09 TGTAATGCAA AGGTCGTTAGTTCAATTCTGACAGGTGGC chrXVI:744078-744637 + 19 5.34e-09 TGTAATGCAA AGGTCGTTAGTTCAATTCTGACAGGTGGC AAAATTTTTT chrVI:167263-167714 + 58 6.37e-09 CGAAATCTTG AGATCGGGCGTTCGACTCGCCCCCGGGAG ATATTTTTTT chrXIII:168683-169046 + 40 6.37e-09 CGAAATCTTG AGATCGGGCGTTCGACTCGCCCCCGGGAG ATATTTTTTT chrIV:946181-946590 + 36 6.37e-09 CGAAATCTTG AGATCGGGCGTTCGACTCGCCCCCGGGAG ATTTTTTTAT chrV:434390-434755 - 20 8.28e-09 TGTGGCCGAT GAAACCCTGGTTCGATTCTAGGAGATGGC ATTTTCTTTT chrXI:312857-314016 - 16 8.28e-09 TGTGGCCGAT GAAACCCTGGTTCGATTCTAGGAGATGGC ATTTTATTTT chrIV:1095132-1095662 - 24 1.26e-08 AGATATCTGG AGGTCCTGTGTTCGATCCACAGAGTTCGC ATTTTTATTT chrXIII:131604-132082 - 33 2.41e-08 TCTAATCAGA AGATTATGGGTTCGACCCCCATCGTGAGT GCTTTGTTTC chrV:492210-492537 - 30 2.82e-08 ACGAACCAGA AGATTCCAGGTTCAAGTCCTGGCGGGGAA GGATTATTTT chrII:9380-9881 - 54 1.05e-07 AAATACTGAA GGATGCGAGGTTCGAACTCGCGCGGACAA CCGTCCAACA chrIV:519670-519902 - 58 1.05e-07 AGTTATTGAA GGATGCGAGGTTCGAACTCGCGCGGACAA CCGTCCAACA chrXIII:408390-408859 - 46 1.37e-07 TCCTCAGTCG GAGTCAAGGATTCGAGTCGCGCCGCCGCG TACGTAGTTT chrXIV:776767-777258 + 5 2.79e-07 ATAA AGTTCCCGGGGTCAATTTCTGGTAGTGGC AAGCAAAGTA chrII:350625-351065 - 71 8.40e-07 T CTTACCCGGATTCGAACCGGGGTTGTCCG GATCAAAACC chrXIII:161917-162697 + 2 2.82e-06 G CGGTTCTGAATTCAAATCTAACTTCACCA TTTTGAACAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGTCCBSGGTTCGATYCYSVGYKBGVGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631546-632136 7.1e-15 55_[-1]_16 chrXVI:860121-860696 2.1e-14 61_[+1]_10 chrX:531607-531707 2.1e-14 8_[+1]_63 chrIV:83449-83811 2.1e-14 8_[+1]_63 chrIV:992707-993031 2.1e-14 53_[+1]_18 chrVII:845294-846102 2.1e-14 41_[+1]_30 chrIV:1075279-1075748 8e-13 9_[-1]_62 chrXIII:195938-196284 2.8e-12 7_[-1]_64 chrXV:464300-464791 2.8e-12 26_[+1]_45 chrII:326514-327034 1.2e-11 68_[-1]_3 chrIV:488435-489206 1.2e-11 27_[-1]_44 chrIV:1016922-1017477 1.4e-11 58_[-1]_13 chrV:311718-312311 5.7e-11 59_[-1]_12 chrXII:214690-215042 5.7e-11 67_[-1]_4 chrVII:779438-779924 9.4e-11 26_[+1]_45 chrXIV:96028-96509 9.4e-11 23_[-1]_48 chrVII:541733-542120 1.2e-10 15_[+1]_56 chrIV:644922-645362 1.2e-10 61_[-1]_10 chrXII:796975-797521 1.2e-10 21_[+1]_50 chrV:354677-355322 1.2e-10 26_[+1]_45 chrV:176914-177428 1.2e-10 19_[+1]_52 chrX:378260-378360 1.9e-10 48_[+1]_23 chrXIV:569655-570150 1.9e-10 15_[-1]_56 chrII:197305-197785 1.9e-10 42_[+1]_29 chrXI:307894-308403 1.9e-10 46_[-1]_25 chrVII:823360-823686 1.9e-10 52_[+1]_19 chrXIII:586420-586909 1.9e-10 22_[-1]_49 chrIV:1175655-1176067 2.1e-10 60_[+1]_11 chrII:642854-643234 4.6e-10 13_[-1]_58 chrXVI:435623-436189 4.6e-10 37_[-1]_34 chrIV:884284-884738 1.1e-09 2_[+1]_69 chrVII:730978-731402 1.2e-09 40_[+1]_31 chrXIV:632434-632912 1.2e-09 19_[+1]_52 chrX:355205-355305 2.3e-09 71_[+1] chrIX:336144-336618 2.3e-09 18_[-1]_53 chrX:204553-204653 2.3e-09 46_[+1]_25 chrII:266230-266711 2.3e-09 [+1]_71 chrXII:875240-875637 2.6e-09 53_[+1]_18 chrXVI:769004-769436 2.6e-09 37_[-1]_34 chrIV:410030-410790 3.7e-09 61_[+1]_10 chrVII:1004069-1004404 5.3e-09 71_[+1] chrXVI:744078-744637 5.3e-09 18_[+1]_53 chrVI:167263-167714 6.4e-09 57_[+1]_14 chrXIII:168683-169046 6.4e-09 39_[+1]_32 chrIV:946181-946590 6.4e-09 35_[+1]_36 chrV:434390-434755 8.3e-09 19_[-1]_52 chrXI:312857-314016 8.3e-09 15_[-1]_56 chrIV:1095132-1095662 1.3e-08 23_[-1]_48 chrXIII:131604-132082 2.4e-08 32_[-1]_39 chrV:492210-492537 2.8e-08 29_[-1]_42 chrII:9380-9881 1e-07 53_[-1]_18 chrIV:519670-519902 1e-07 57_[-1]_14 chrXIII:408390-408859 1.4e-07 45_[-1]_26 chrXIV:776767-777258 2.8e-07 4_[+1]_67 chrII:350625-351065 8.4e-07 70_[-1]_1 chrXIII:161917-162697 2.8e-06 1_[+1]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGTCCBSGGTTCGATYCYSVGYKBGVGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGGTCCBSGGTTCGATYCYSVGYKBGVGC width=29 seqs=56 chrXIV:631546-632136 ( 56) AGGTCCCGGGTTCGAGTCCCGGCTCGCCC 1 chrXVI:860121-860696 ( 62) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrX:531607-531707 ( 9) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrIV:83449-83811 ( 9) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrIV:992707-993031 ( 54) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrVII:845294-846102 ( 42) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrIV:1075279-1075748 ( 10) AGGTCCCGAGTTCGATCCTCGGTTGGAAC 1 chrXIII:195938-196284 ( 8) AGGCCCTGGGTTCAATTCCCAGCTCGCCC 1 chrXV:464300-464791 ( 27) AGGCCCTGGGTTCAATTCCCAGCTCGCCC 1 chrII:326514-327034 ( 69) AGATCCCGAGTTCGAACCTCGGTTGGATC 1 chrIV:488435-489206 ( 28) AGATCCCGAGTTCGAACCTCGGTTGGATC 1 chrIV:1016922-1017477 ( 59) GAGACCGGGGTTCGACTCCCCGCTTCGGA 1 chrV:311718-312311 ( 60) AGGTCATCGGTTCGATTCCGGTTGCGTCC 1 chrXII:214690-215042 ( 68) AGGTCATCGGTTCGATTCCGGTTGCGTCC 1 chrVII:779438-779924 ( 27) GGGACACGGGTTCGATTCTCGTACCGCTC 1 chrXIV:96028-96509 ( 24) GGGACACGGGTTCGATTCTCGTACCGCTC 1 chrVII:541733-542120 ( 16) GAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrIV:644922-645362 ( 62) ACAACCCCGGTTCGAATCCGGGTAGGACC 1 chrXII:796975-797521 ( 22) GAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrV:354677-355322 ( 27) GAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrV:176914-177428 ( 20) GAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrX:378260-378360 ( 49) ACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrXIV:569655-570150 ( 16) GGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrII:197305-197785 ( 43) GGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrXI:307894-308403 ( 47) ACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrVII:823360-823686 ( 53) ACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrXIII:586420-586909 ( 23) ACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrIV:1175655-1176067 ( 61) AGGTCGAGAGTTCGAACCTCCCCTGGAGC 1 chrII:642854-643234 ( 14) TGGTCCTTAGTTCGATCCTGAGTGCGAGC 1 chrXVI:435623-436189 ( 38) TGGTCCTTAGTTCGATCCTGAGTGCGAGC 1 chrIV:884284-884738 ( 3) CCGTCGTGGGTTCAAACCCCACCTCGAGC 1 chrVII:730978-731402 ( 41) AGATCGTGAGTTCAACCCTCACTGGGGTC 1 chrXIV:632434-632912 ( 20) AGATCGTGAGTTCAACCCTCACTGGGGTC 1 chrX:355205-355305 ( 72) CAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrIX:336144-336618 ( 19) CAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrX:204553-204653 ( 47) CAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrII:266230-266711 ( 1) AGATCATCGGTTCAAATCCGATTGGAAGC 1 chrXII:875240-875637 ( 54) ATGTCAGGGGTTCGAGCCCCCTATGAGGA 1 chrXVI:769004-769436 ( 38) ATGTCAGGGGTTCGAGCCCCCTATGAGGA 1 chrIV:410030-410790 ( 62) AGGTCTCCGGTTCGATTCCGGACTCGTCC 1 chrVII:1004069-1004404 ( 72) AGGTCGTTAGTTCAATTCTGACAGGTGGC 1 chrXVI:744078-744637 ( 19) AGGTCGTTAGTTCAATTCTGACAGGTGGC 1 chrVI:167263-167714 ( 58) AGATCGGGCGTTCGACTCGCCCCCGGGAG 1 chrXIII:168683-169046 ( 40) AGATCGGGCGTTCGACTCGCCCCCGGGAG 1 chrIV:946181-946590 ( 36) AGATCGGGCGTTCGACTCGCCCCCGGGAG 1 chrV:434390-434755 ( 20) GAAACCCTGGTTCGATTCTAGGAGATGGC 1 chrXI:312857-314016 ( 16) GAAACCCTGGTTCGATTCTAGGAGATGGC 1 chrIV:1095132-1095662 ( 24) AGGTCCTGTGTTCGATCCACAGAGTTCGC 1 chrXIII:131604-132082 ( 33) AGATTATGGGTTCGACCCCCATCGTGAGT 1 chrV:492210-492537 ( 30) AGATTCCAGGTTCAAGTCCTGGCGGGGAA 1 chrII:9380-9881 ( 54) GGATGCGAGGTTCGAACTCGCGCGGACAA 1 chrIV:519670-519902 ( 58) GGATGCGAGGTTCGAACTCGCGCGGACAA 1 chrXIII:408390-408859 ( 46) GAGTCAAGGATTCGAGTCGCGCCGCCGCG 1 chrXIV:776767-777258 ( 5) AGTTCCCGGGGTCAATTTCTGGTAGTGGC 1 chrII:350625-351065 ( 71) CTTACCCGGATTCGAACCGGGGTTGTCCG 1 chrXIII:161917-162697 ( 2) CGGTTCTGAATTCAAATCTAACTTCACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGTCCBSGGTTCGATYCYSVGYKBGVGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 11.5503 E= 4.4e-187 75 -84 82 -311 -65 -84 174 -252 -2 -1245 178 -311 -30 -62 -1245 102 -1245 216 -242 -152 -65 170 -26 -411 -311 103 66 -20 -252 57 153 -152 -20 -184 178 -411 -252 -1245 230 -1245 -1245 -1245 -342 167 -1245 -1245 -1245 170 -1245 238 -1245 -1245 -30 -1245 197 -1245 170 -1245 -1245 -1245 -79 3 -110 80 -1245 103 -1245 98 -1245 230 -1245 -252 -411 153 -110 14 -252 138 110 -311 -41 74 122 -1245 -411 3 166 -79 -65 116 -1245 28 -152 -42 110 14 -111 28 110 -52 -79 -26 148 -130 -11 48 103 -252 -130 16 133 -79 -30 174 -110 -411 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGTCCBSGGTTCGATYCYSVGYKBGVGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 56 E= 4.4e-187 0.517857 0.107143 0.339286 0.035714 0.196429 0.107143 0.642857 0.053571 0.303571 0.000000 0.660714 0.035714 0.250000 0.125000 0.000000 0.625000 0.000000 0.857143 0.035714 0.107143 0.196429 0.625000 0.160714 0.017857 0.035714 0.392857 0.303571 0.267857 0.053571 0.285714 0.553571 0.107143 0.267857 0.053571 0.660714 0.017857 0.053571 0.000000 0.946429 0.000000 0.000000 0.000000 0.017857 0.982143 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.178571 0.196429 0.089286 0.535714 0.000000 0.392857 0.000000 0.607143 0.000000 0.946429 0.000000 0.053571 0.017857 0.553571 0.089286 0.339286 0.053571 0.500000 0.410714 0.035714 0.232143 0.321429 0.446429 0.000000 0.017857 0.196429 0.607143 0.178571 0.196429 0.428571 0.000000 0.375000 0.107143 0.142857 0.410714 0.339286 0.142857 0.232143 0.410714 0.214286 0.178571 0.160714 0.535714 0.125000 0.285714 0.267857 0.392857 0.053571 0.125000 0.214286 0.482143 0.178571 0.250000 0.642857 0.089286 0.017857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGTCCBSGGTTCGATYCYSVGYKBGVGC MEME-1 regular expression -------------------------------------------------------------------------------- [AG]G[GA][TA]CC[CGT][GC][GA]GTTC[GA]AT[TC]C[CT][CG][GCA]G[CT][GT][GCT]G[GAC][GC][CA] -------------------------------------------------------------------------------- Time 355.46 secs. ******************************************************************************** ******************************************************************************** MOTIF GGBYNHKTGGCCBAGTGGKWWRAGSSDYCS MEME-2 width = 30 sites = 33 llr = 676 E-value = 6.2e-102 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGBYNHKTGGCCBAGTGGKWWRAGSSDYCS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :112231:2:::1a::1::3577:::4222 pos.-specific C :32433::::763:::2::2::1:561362 probability G a632325:8a:13:a:5a5::318443125 matrix T ::43224a::334::a2:555:121:24:1 bits 2.4 * * * 2.1 * * * * 1.9 * * * * 1.7 * *** *** * * Relative 1.4 * *** *** * * * Entropy 1.2 * **** *** * * * (29.6 bits) 1.0 ** ***** *** ** * *** * 0.7 ** ***** *** ** * *** * 0.5 ** ****** ****** ****** * 0.2 **** ******************** ** 0.0 ------------------------------ Multilevel GGTCGCGTGGCCTAGTGGGTAAAGCCATCG consensus CGTCAT TTG C TATG GGGCAC sequence C AT C T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGBYNHKTGGCCBAGTGGKWWRAGSSDYCS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIV:602093-602534 + 49 7.68e-14 AGATAACAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrXIV:569655-570150 - 59 7.68e-14 AGATAACAGT GGTCTCTTGGCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrX:617727-617827 + 51 8.40e-13 AACAAACAAT GGGAGTTTGGCCGAGTGGTTTAAGGCGTCA GATTTAGGTG chrII:9380-9881 + 3 3.34e-11 GT GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA GACTTAAGAT chrX:424291-424391 - 43 3.34e-11 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA GACTTAAGAT chrIV:519670-519902 + 7 3.34e-11 TTTTAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA GACTTAAGAT chrIV:410030-410790 + 19 3.76e-11 TACAAATATT GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC CTTAGCATGG chrXI:517793-518187 + 48 3.76e-11 TATCTACTAT GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC CTTAGCATGG chrVII:774151-774566 + 41 3.76e-11 TCAATTAATT GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC CTTAGCATGG chrIV:1305375-1305890 + 48 5.33e-11 TACAAATTAA GGCAACTTGGCCGAGTGGTTAAGGCGAAAG ATTAGAAATC chrIV:437547-438031 + 33 5.33e-11 TCATTAGTAA GGCAACTTGGCCGAGTGGTTAAGGCGAAAG ATTAGAAATC chrXII:167796-168208 - 44 5.33e-11 ATAGTCATAT GGCAACTTGGCCGAGTGGTTAAGGCGAAAG ATTAGAAATC chrXIII:420305-421004 - 28 6.69e-11 ACAAATAACA GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrX:378260-378360 + 5 6.69e-11 AATA GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrVII:823360-823686 + 9 6.69e-11 ATAAGAGT GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrXIII:586420-586909 - 66 6.69e-11 ACTAT GGTTTCGTGGTCTAGTCGGTTATGGCATCT GCTTAACACG chrVII:700155-701213 + 41 7.48e-11 CAGATGAATT GGTACTCTGGCCGAGTGGTCTAAGGCGTCA GGTCGAGGTC chrVI:191266-191917 - 43 1.75e-10 AAGAGATTCT GTCCCAGTGGCCGAGTGGTTAAGGCGATGC CCTGCTATTT chrXVI:860121-860696 + 21 2.13e-10 TAAATAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrIV:992707-993031 + 13 2.13e-10 ACAATTGTGA GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrVII:845294-846102 + 1 2.13e-10 . GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrXI:84001-84418 + 49 2.86e-10 AAATTTGTAT GGAGGGTTGGCCGAGTGGTCTAATGCGGCA GACTTAAGAT chrIV:488435-489206 - 71 9.12e-10 . GGTCCAATGGTCCAGTGGTTCAAGACGTCG CCTTTACACG chrXII:92428-92712 + 28 1.08e-09 AAGTTAATAA GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrI:138966-139349 + 45 1.08e-09 CAATTAGTAC GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrIV:1175655-1176067 + 18 1.26e-09 ACAAAACAAA GCTTCAGTAGCTCAGTAGGAAGAGCGTCAG TCTCATAATC chrXIII:572456-573460 - 18 1.26e-09 ATAACAGATA GCTTCAGTAGCTCAGTAGGAAGAGCGTCAG TCTCATAATC chrX:390895-390995 - 17 1.26e-09 AAGAAATAGT GCTTCAGTAGCTCAGTAGGAAGAGCGTCAG TCTCATAATC chrX:422651-422751 + 53 1.26e-09 TCCTTTGTAT GCTTCAGTAGCTCAGTAGGAAGAGCGTCAG TCTCATAATC chrXI:74385-74888 + 38 2.16e-09 ATAGCAATTA GACTCCATGGCCAAGTTGGTTAAGGCGTGC GACTGTTAAT chrXV:228046-228631 + 43 2.16e-09 TAAAATATTA GACTCCATGGCCAAGTTGGTTAAGGCGTGC GACTGTTAAT chrII:36266-36571 + 30 1.04e-08 TCAGTTGTAA GCGGATTTAGCTCAGTTGGGAGAGCGCCAG ACTGAAGAAA chrIV:359340-359887 + 14 1.23e-08 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTCG GCTTTTAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGBYNHKTGGCCBAGTGGKWWRAGSSDYCS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:602093-602534 7.7e-14 48_[+2]_22 chrXIV:569655-570150 7.7e-14 58_[-2]_12 chrX:617727-617827 8.4e-13 50_[+2]_20 chrII:9380-9881 3.3e-11 2_[+2]_68 chrX:424291-424391 3.3e-11 42_[-2]_28 chrIV:519670-519902 3.3e-11 6_[+2]_64 chrIV:410030-410790 3.8e-11 18_[+2]_52 chrXI:517793-518187 3.8e-11 47_[+2]_23 chrVII:774151-774566 3.8e-11 40_[+2]_30 chrIV:1305375-1305890 5.3e-11 47_[+2]_23 chrIV:437547-438031 5.3e-11 32_[+2]_38 chrXII:167796-168208 5.3e-11 43_[-2]_27 chrXIII:420305-421004 6.7e-11 27_[-2]_43 chrX:378260-378360 6.7e-11 4_[+2]_66 chrVII:823360-823686 6.7e-11 8_[+2]_62 chrXIII:586420-586909 6.7e-11 65_[-2]_5 chrVII:700155-701213 7.5e-11 40_[+2]_30 chrVI:191266-191917 1.7e-10 42_[-2]_28 chrXVI:860121-860696 2.1e-10 20_[+2]_50 chrIV:992707-993031 2.1e-10 12_[+2]_58 chrVII:845294-846102 2.1e-10 [+2]_70 chrXI:84001-84418 2.9e-10 48_[+2]_22 chrIV:488435-489206 9.1e-10 70_[-2] chrXII:92428-92712 1.1e-09 27_[+2]_43 chrI:138966-139349 1.1e-09 44_[+2]_26 chrIV:1175655-1176067 1.3e-09 17_[+2]_53 chrXIII:572456-573460 1.3e-09 17_[-2]_53 chrX:390895-390995 1.3e-09 16_[-2]_54 chrX:422651-422751 1.3e-09 52_[+2]_18 chrXI:74385-74888 2.2e-09 37_[+2]_33 chrXV:228046-228631 2.2e-09 42_[+2]_28 chrII:36266-36571 1e-08 29_[+2]_41 chrIV:359340-359887 1.2e-08 13_[+2]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGBYNHKTGGCCBAGTGGKWWRAGSSDYCS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGBYNHKTGGCCBAGTGGKWWRAGSSDYCS width=30 seqs=33 chrXIV:602093-602534 ( 49) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrXIV:569655-570150 ( 59) GGTCTCTTGGCCCAGTTGGTTAAGGCACCG 1 chrX:617727-617827 ( 51) GGGAGTTTGGCCGAGTGGTTTAAGGCGTCA 1 chrII:9380-9881 ( 3) GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA 1 chrX:424291-424391 ( 43) GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA 1 chrIV:519670-519902 ( 7) GGAGGGTTGGCCGAGTGGTCTAAGGCGGCA 1 chrIV:410030-410790 ( 19) GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC 1 chrXI:517793-518187 ( 48) GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC 1 chrVII:774151-774566 ( 41) GGGCGTGTGGCGTAGTCGGTAGCGCGCTCC 1 chrIV:1305375-1305890 ( 48) GGCAACTTGGCCGAGTGGTTAAGGCGAAAG 1 chrIV:437547-438031 ( 33) GGCAACTTGGCCGAGTGGTTAAGGCGAAAG 1 chrXII:167796-168208 ( 44) GGCAACTTGGCCGAGTGGTTAAGGCGAAAG 1 chrXIII:420305-421004 ( 28) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrX:378260-378360 ( 5) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrVII:823360-823686 ( 9) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrXIII:586420-586909 ( 66) GGTTTCGTGGTCTAGTCGGTTATGGCATCT 1 chrVII:700155-701213 ( 41) GGTACTCTGGCCGAGTGGTCTAAGGCGTCA 1 chrVI:191266-191917 ( 43) GTCCCAGTGGCCGAGTGGTTAAGGCGATGC 1 chrXVI:860121-860696 ( 21) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrIV:992707-993031 ( 13) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrVII:845294-846102 ( 1) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrXI:84001-84418 ( 49) GGAGGGTTGGCCGAGTGGTCTAATGCGGCA 1 chrIV:488435-489206 ( 71) GGTCCAATGGTCCAGTGGTTCAAGACGTCG 1 chrXII:92428-92712 ( 28) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrI:138966-139349 ( 45) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrIV:1175655-1176067 ( 18) GCTTCAGTAGCTCAGTAGGAAGAGCGTCAG 1 chrXIII:572456-573460 ( 18) GCTTCAGTAGCTCAGTAGGAAGAGCGTCAG 1 chrX:390895-390995 ( 17) GCTTCAGTAGCTCAGTAGGAAGAGCGTCAG 1 chrX:422651-422751 ( 53) GCTTCAGTAGCTCAGTAGGAAGAGCGTCAG 1 chrXI:74385-74888 ( 38) GACTCCATGGCCAAGTTGGTTAAGGCGTGC 1 chrXV:228046-228631 ( 43) GACTCCATGGCCAAGTTGGTTAAGGCGTGC 1 chrII:36266-36571 ( 30) GCGGATTTAGCTCAGTTGGGAGAGCGCCAG 1 chrIV:359340-359887 ( 14) TCCTTGTTAGCTCAGTTGGTAGAGCGTTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGBYNHKTGGCCBAGTGGKWWRAGSSDYCS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 12.0855 E= 6.2e-102 -1169 -1169 234 -334 -234 51 173 -334 -135 15 66 24 -102 92 -34 11 -54 51 66 -54 -18 80 -34 -35 -176 -266 143 24 -1169 -1169 -1169 170 -76 -1169 209 -1169 -1169 -1169 238 -1169 -1169 186 -1169 -2 -1169 173 -108 -18 -234 51 66 24 170 -1169 -1169 -1169 -1169 -1169 238 -1169 -1169 -1169 -1169 170 -135 15 134 -76 -1169 -1169 238 -1169 -1169 -1169 143 65 -18 -34 -266 82 65 -266 -1169 65 111 -1169 80 -1169 111 -108 -66 -135 -1169 -1169 209 -76 -334 134 115 -234 -1169 166 104 -1169 35 -66 51 -54 -76 51 -66 46 -35 166 -34 -1169 -76 34 124 -135 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGBYNHKTGGCCBAGTGGKWWRAGSSDYCS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 33 E= 6.2e-102 0.000000 0.000000 0.969697 0.030303 0.060606 0.272727 0.636364 0.030303 0.121212 0.212121 0.303030 0.363636 0.151515 0.363636 0.151515 0.333333 0.212121 0.272727 0.303030 0.212121 0.272727 0.333333 0.151515 0.242424 0.090909 0.030303 0.515152 0.363636 0.000000 0.000000 0.000000 1.000000 0.181818 0.000000 0.818182 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.696970 0.000000 0.303030 0.000000 0.636364 0.090909 0.272727 0.060606 0.272727 0.303030 0.363636 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.121212 0.212121 0.484848 0.181818 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.515152 0.484848 0.272727 0.151515 0.030303 0.545455 0.484848 0.030303 0.000000 0.484848 0.666667 0.000000 0.333333 0.000000 0.666667 0.090909 0.121212 0.121212 0.000000 0.000000 0.818182 0.181818 0.030303 0.484848 0.424242 0.060606 0.000000 0.606061 0.393939 0.000000 0.393939 0.121212 0.272727 0.212121 0.181818 0.272727 0.121212 0.424242 0.242424 0.606061 0.151515 0.000000 0.181818 0.242424 0.454545 0.121212 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGBYNHKTGGCCBAGTGGKWWRAGSSDYCS MEME-2 regular expression -------------------------------------------------------------------------------- G[GC][TGC][CT][GCAT][CAT][GT]TGG[CT][CT][TGC]AGT[GC]G[GT][TA][AT][AG]AG[CG][CG][AGT][TC][CA][GC] -------------------------------------------------------------------------------- Time 680.38 secs. ******************************************************************************** ******************************************************************************** MOTIF WRAAAAAAAAAAAAARWDRAA MEME-3 width = 21 sites = 76 llr = 826 E-value = 8.8e-036 ******************************************************************************** -------------------------------------------------------------------------------- Motif WRAAAAAAAAAAAAARWDRAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 637a78788795987544577 pos.-specific C :11::::::::1:::111:2: probability G :52:312222:312141341: matrix T 4::::11::111::2133113 bits 2.4 2.1 1.9 1.7 * Relative 1.4 * Entropy 1.2 * ** ** (15.7 bits) 1.0 *** ** * ** 0.7 *********** ** * 0.5 *********** **** *** 0.2 **************** *** 0.0 --------------------- Multilevel AGAAAAAAAAAAAAAAAAAAA consensus TAG G GG G TGTTG T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRAAAAAAAAAAAAARWDRAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:720723-723201 + 5 1.80e-09 AACT AAAAAAAAAAAAAAAGTAGAA AATTGTGAGG chrIX:380132-381733 + 52 5.00e-09 TTCTAGTGGT AGAAAAAAAAAAAAAAACAAA CTTTAAACCG chrII:478953-479555 + 67 6.31e-09 GTTACTTGAA ACAAAAAAAAAAAAAATGGAA AAAGCTGCTA chrXIII:807763-808539 - 62 1.22e-08 AACCAATGCG AGAAAAAAATAAAAAGAGAAA GGTAAGAAAA chrXII:704264-704590 - 75 1.50e-08 GATGG AGGAGAAAAGAAAAAAAAAAA TGAAAAAAAA chrIV:644922-645362 + 9 4.70e-08 ACATTCTC TGAAAAAAAAAAAAAGTAACT GATGGTTCAA chrIV:1354396-1355601 - 50 5.60e-08 TCAAATTGCA AGAAGAAGAAAGAGAAAGAAA GGATCAATAC chrVII:989777-990872 + 39 7.86e-08 AAAATAGGTC AGAAAAAAAAAAAGACAGGCA AAATAGGTGT chrII:477164-477783 - 79 7.86e-08 A TGGAAAAAAAAAAATAGGAAA AGCCAGAAAT chrXVI:927628-928080 - 10 9.26e-08 AACTCTATAA TGAAAAAAAAACAAACAGGCA AAAGCAGAT chrXI:551626-552872 + 42 1.27e-07 TACTCACGTT AAGAGAAAAGAAAAAGAGGAT TCGATTTAAG chrVII:736214-736837 + 79 1.73e-07 ATAAATTTAT AAAAAAAAAAAAAAAGTTACT T chrVII:609317-610090 + 69 2.01e-07 AGACCGAGGG AGAAAAAAAAAAGGAACTAAA AAAGGGCCTA chrXIV:104618-105547 - 12 2.01e-07 TATTGCACGA AAGAAAAAAAATAAAGATAAA GTGAACAGTA chrVII:824453-825002 + 41 2.01e-07 AAGCTGCTTT AGAAAAGAAGAGAAAGGAGCA ACTTGAAGGT chrIV:83449-83811 - 42 3.56e-07 GAAAACAATG TGGAAAAAGAAAAAAAATTAA ACTTGCGCAA chrXVI:282054-283235 - 49 3.56e-07 GACGTACACT AAAAAAAAAAAAGGAATAAAA TCCCAAAACA chrIV:928520-930414 + 31 3.56e-07 TATTCTTGTT TGAAATGAAAAAAAAAAAGCA CTCAAGCGTT chrXIV:715695-717218 - 5 4.08e-07 GAGCAGTAAT TAAAAAAAAAAAAAAGCATAT TGAT chrX:531607-531707 - 40 8.86e-07 TTTCTTATTT TCCAGAAAAAAAGAAAAGAAA CTGCGCAAGC chrXIII:362963-363361 - 19 8.86e-07 TTCTTTTCTT TGAAAAAAAAAGAAAATGCCA TCTCCTAGAA chrXI:258070-260034 + 72 1.13e-06 TGTAACGTTC TAAAAAAAAAACAACGAAAAA ATTGAAAA chrXI:430235-431237 - 30 1.27e-06 TGCTACATGC AGAAAAAAAAAGAGGAAATAA TATAAGGTAT chrIV:322181-323646 + 12 1.43e-06 GAGAATTTCC AGAAAGAGAAACGAAGAAGAA GACGCCAAGA chrXIII:168683-169046 - 69 1.79e-06 CTAGGCCTGG AGAAAAAGGGAAAAAAAATAT CTCCCGGGGG chrXII:780515-781399 + 78 1.79e-06 AGTAAGAAAA ACAAAAGGAAACAAAAACAAA AA chrIV:465198-465631 - 50 1.79e-06 TGGAAAGACC TAAAGAAAATAGAAAACGGAT TTAAACGGAA chrIII:82122-82676 + 15 2.00e-06 AACTATTTTT TGAAAAAAATAAAATGGTAAT TTATTAAATA chrX:526211-526311 + 57 2.00e-06 TTTGGTGGGT TGAAGAAGGAAAAAGACAGAA ACGACTTAAT chrX:701799-701899 + 47 3.08e-06 ATGGAGATAT ACAAAAGAAGAAAATAATTAA GTTGTTATGA chrV:305872-306102 - 78 3.08e-06 CA AGAAATGAAAAGAAAGTTGTA GGATGTGTGG chrX:702535-702635 + 38 3.08e-06 GAAAAAAATG AGAAAAAAGGGCAAAAATGAA TGTATAATGA chrXI:333636-335017 + 28 3.08e-06 AAAAAGTTGA TGCAGAGAAAAAAGAGAGAGA GGTTACATAT chrIV:229826-231142 + 24 3.41e-06 ACGCTGCTGC TGAAGAAGAAAAAGAAGAAGA AGCTGCTGAA chrV:51794-53285 + 79 3.41e-06 TCCAGAGAGG AAGAGAAGAGACAAAACAGAT A chrXV:384597-385053 - 26 3.78e-06 ACCACGGCGC TGAAAAAAAAAAAATCGGAAC CGGAGTTGCC chrX:73583-73683 - 78 3.78e-06 AG TAAAAAAAAAAGAAATCATAA TCTTCTACCT chrXV:1005542-1006728 + 6 3.78e-06 CATCG AAGAGTAAAAACAATAATAAA AAAAGAAATT chrXIII:408390-408859 + 17 4.18e-06 AACGCGCGAT AAAAAAAAAATTAAAAGTAAA ACTACGTACG chrIV:1488310-1490389 + 31 4.18e-06 GTAATAATTA TAGAGAGGAAATAAAAATAAA CAGATAAGTT chrXV:571595-572119 - 77 4.18e-06 TTG AAAAAATAAAAAAATGTTGCA GCAAGTGATC chrXV:409249-409963 + 45 4.62e-06 CGCTGTTTCT AGAAATAAGAAAAATCCGGAT GAGGATGAAT chrIII:114335-114677 + 41 4.62e-06 TTCCGAAAGT TAAAAAAGAAATAGTAAGAAA TATATATTTC chrXV:380648-381216 + 12 5.09e-06 TCCTCCTTTA AGGAATAAAGAAAAAATCACA TACATAGATT chrXVI:842847-843399 - 49 5.61e-06 AATAGAAAGT TGGAAAAAAAAAAAGGCTATA AGATATATCG chrVIII:236321-236857 + 13 6.17e-06 TGTTATATAA AGAAGAAGAATAAATTAGGAA GTAGGGGGAA chrXI:439798-440768 + 38 6.17e-06 TTTACGGTTC AAGAGAAAGATAAATGCAGAA TCAATCAATA chrVIII:147483-148744 + 60 6.17e-06 AAACCTGTAA TGAAATAAATAGAAACGAAAA CGAAAGTCGT chrVII:411915-412584 + 78 6.17e-06 CGTTTTTGAT TAGAAAAAAATAAAACTTGAT TT chrII:88909-89503 - 67 6.78e-06 CGAGTTTTTC ACAAGAAGAGATGAAAAGAAA CCAAAGCATA chrVII:774151-774566 - 1 7.43e-06 ATGAAAGGGG AGAATAGAGAAGAATAATGAA chrXII:214690-215042 + 46 8.14e-06 AAAATAAAGG AGAATAAAAGTAAAAAATAAA TGGACGCAAC chrVII:786761-788231 - 4 8.14e-06 TAGAAAAGCT AACAGAGAAGAAAAATTGAAA GCC chrVII:255192-255734 - 57 8.91e-06 AACATCGCTG AGAAAGGAAAGAAAAATGGCA TGATATGGAG chrV:422776-423305 + 22 8.91e-06 ACACTGAAAA ACAAGAGAAAAGAGTAAAGGA GATGGCTTGA chrXV:109750-111180 + 45 9.74e-06 GCTGAACAGG TGAAGAAGGAAGAACAAAACA TTACTGATGG chrIV:434007-435112 - 54 9.74e-06 AACGCATAAA AGGAAAGAAGATAAAATAATA ACATTATGTA chrXV:1053992-1054529 - 29 1.06e-05 TATTTTTTAA TCAAATGAGAAAAAAGTATAA CGATTAAAAA chrX:523130-523230 + 16 1.06e-05 GTACCCGCTT TCAAAATAAATAAAAGAAGAT CCAGCTCTAA chrXII:950985-953737 - 35 1.16e-05 GGTGATATTA ACCAGAGAAGAGAAACTTGAT ACGGGGTCGC chrVII:545121-545955 + 6 1.37e-05 CGATT TCCAAAGGGAAGAAAATAAAT AAAGTTGTGC chrXIV:102589-103234 - 2 1.49e-05 AAGCAGTTAA AGGAAAAGAGAGAAACTACAT T chrXII:730828-732282 - 67 1.76e-05 TTATAGCAGC AGAAGAAAGTAGAAAACGATT TATTCTCCTT chrVII:555718-557619 + 80 2.06e-05 ACATAGATCA TACAAAAAATACAATAAATAA chrXI:578771-579592 + 1 2.22e-05 . AAGAAAAGGAAGGAAGTTAGA ACTGAAATGC chrXIII:797729-798240 - 31 2.22e-05 TAGCGTATAA TGGAAGAAAAAAAATGAATTA TCATATGTGC chrVII:648745-649392 + 68 2.22e-05 GATCTTCGGA TAAAAATAAAAAGAAGGCGAT GAAAACAAAA chrVII:185511-185795 + 47 2.22e-05 TTCTTCTTTG AGATATAAAAAGGAAGTAGAA TTTAATATAT chrVIII:237758-238354 + 75 2.40e-05 CGACAGTATG TAAAGATAAAAGGGAGATAAT ACCCC chrVIII:475484-475882 + 51 2.40e-05 GGCTATGACA AACAAAAAAATCGATGTTAAA ATGTTCCAAC chrXII:1028817-1030328 + 52 3.01e-05 AAATTTGACC AAGAAGGAAAAGAAGGAAGCT AACTTGTTCC chrII:594952-595464 + 21 3.23e-05 AGATTATTTT TGCAGAAGAAACAAAGACGCC GCTTGTTACT chrXVI:700457-700676 - 7 3.47e-05 CTAATGAGCA AGAAGTAAAAAAAGTTGTAAT AGAACA chrVII:930606-931172 + 21 4.59e-05 TGTAAAAATG AACAATAAGAATAATGTAAAT TTGTTTTATT chrVII:149227-149398 + 30 5.60e-05 GACGTCTTTA AAAAAAGAAATCAGTATGTAT GGGTGGGTGT chrVII:328424-329036 + 74 6.36e-05 AGGCACCGAA TGAAGAAAATGAGAACCTAAT TTCGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRAAAAAAAAAAAAARWDRAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:720723-723201 1.8e-09 4_[+3]_75 chrIX:380132-381733 5e-09 51_[+3]_28 chrII:478953-479555 6.3e-09 66_[+3]_13 chrXIII:807763-808539 1.2e-08 61_[-3]_18 chrXII:704264-704590 1.5e-08 74_[-3]_5 chrIV:644922-645362 4.7e-08 8_[+3]_71 chrIV:1354396-1355601 5.6e-08 49_[-3]_30 chrVII:989777-990872 7.9e-08 38_[+3]_41 chrII:477164-477783 7.9e-08 78_[-3]_1 chrXVI:927628-928080 9.3e-08 9_[-3]_70 chrXI:551626-552872 1.3e-07 41_[+3]_38 chrVII:736214-736837 1.7e-07 78_[+3]_1 chrVII:609317-610090 2e-07 68_[+3]_11 chrXIV:104618-105547 2e-07 11_[-3]_68 chrVII:824453-825002 2e-07 40_[+3]_39 chrIV:83449-83811 3.6e-07 41_[-3]_38 chrXVI:282054-283235 3.6e-07 48_[-3]_31 chrIV:928520-930414 3.6e-07 30_[+3]_49 chrXIV:715695-717218 4.1e-07 4_[-3]_75 chrX:531607-531707 8.9e-07 39_[-3]_40 chrXIII:362963-363361 8.9e-07 18_[-3]_61 chrXI:258070-260034 1.1e-06 71_[+3]_8 chrXI:430235-431237 1.3e-06 29_[-3]_50 chrIV:322181-323646 1.4e-06 11_[+3]_68 chrXIII:168683-169046 1.8e-06 68_[-3]_11 chrXII:780515-781399 1.8e-06 77_[+3]_2 chrIV:465198-465631 1.8e-06 49_[-3]_30 chrIII:82122-82676 2e-06 14_[+3]_65 chrX:526211-526311 2e-06 56_[+3]_23 chrX:701799-701899 3.1e-06 46_[+3]_33 chrV:305872-306102 3.1e-06 77_[-3]_2 chrX:702535-702635 3.1e-06 37_[+3]_42 chrXI:333636-335017 3.1e-06 27_[+3]_52 chrIV:229826-231142 3.4e-06 23_[+3]_56 chrV:51794-53285 3.4e-06 78_[+3]_1 chrXV:384597-385053 3.8e-06 25_[-3]_54 chrX:73583-73683 3.8e-06 77_[-3]_2 chrXV:1005542-1006728 3.8e-06 5_[+3]_74 chrXIII:408390-408859 4.2e-06 16_[+3]_63 chrIV:1488310-1490389 4.2e-06 30_[+3]_49 chrXV:571595-572119 4.2e-06 76_[-3]_3 chrXV:409249-409963 4.6e-06 44_[+3]_35 chrIII:114335-114677 4.6e-06 40_[+3]_39 chrXV:380648-381216 5.1e-06 11_[+3]_68 chrXVI:842847-843399 5.6e-06 48_[-3]_31 chrVIII:236321-236857 6.2e-06 12_[+3]_67 chrXI:439798-440768 6.2e-06 37_[+3]_42 chrVIII:147483-148744 6.2e-06 59_[+3]_20 chrVII:411915-412584 6.2e-06 77_[+3]_2 chrII:88909-89503 6.8e-06 66_[-3]_13 chrVII:774151-774566 7.4e-06 [-3]_79 chrXII:214690-215042 8.1e-06 45_[+3]_34 chrVII:786761-788231 8.1e-06 3_[-3]_76 chrVII:255192-255734 8.9e-06 56_[-3]_23 chrV:422776-423305 8.9e-06 21_[+3]_58 chrXV:109750-111180 9.7e-06 44_[+3]_35 chrIV:434007-435112 9.7e-06 53_[-3]_26 chrXV:1053992-1054529 1.1e-05 28_[-3]_51 chrX:523130-523230 1.1e-05 15_[+3]_64 chrXII:950985-953737 1.2e-05 34_[-3]_45 chrVII:545121-545955 1.4e-05 5_[+3]_74 chrXIV:102589-103234 1.5e-05 1_[-3]_78 chrXII:730828-732282 1.8e-05 66_[-3]_13 chrVII:555718-557619 2.1e-05 79_[+3] chrXI:578771-579592 2.2e-05 [+3]_79 chrXIII:797729-798240 2.2e-05 30_[-3]_49 chrVII:648745-649392 2.2e-05 67_[+3]_12 chrVII:185511-185795 2.2e-05 46_[+3]_33 chrVIII:237758-238354 2.4e-05 74_[+3]_5 chrVIII:475484-475882 2.4e-05 50_[+3]_29 chrXII:1028817-1030328 3e-05 51_[+3]_28 chrII:594952-595464 3.2e-05 20_[+3]_59 chrXVI:700457-700676 3.5e-05 6_[-3]_73 chrVII:930606-931172 4.6e-05 20_[+3]_59 chrVII:149227-149398 5.6e-05 29_[+3]_50 chrVII:328424-329036 6.4e-05 73_[+3]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRAAAAAAAAAAAAARWDRAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WRAAAAAAAAAAAAARWDRAA width=21 seqs=76 chrXIV:720723-723201 ( 5) AAAAAAAAAAAAAAAGTAGAA 1 chrIX:380132-381733 ( 52) AGAAAAAAAAAAAAAAACAAA 1 chrII:478953-479555 ( 67) ACAAAAAAAAAAAAAATGGAA 1 chrXIII:807763-808539 ( 62) AGAAAAAAATAAAAAGAGAAA 1 chrXII:704264-704590 ( 75) AGGAGAAAAGAAAAAAAAAAA 1 chrIV:644922-645362 ( 9) TGAAAAAAAAAAAAAGTAACT 1 chrIV:1354396-1355601 ( 50) AGAAGAAGAAAGAGAAAGAAA 1 chrVII:989777-990872 ( 39) AGAAAAAAAAAAAGACAGGCA 1 chrII:477164-477783 ( 79) TGGAAAAAAAAAAATAGGAAA 1 chrXVI:927628-928080 ( 10) TGAAAAAAAAACAAACAGGCA 1 chrXI:551626-552872 ( 42) AAGAGAAAAGAAAAAGAGGAT 1 chrVII:736214-736837 ( 79) AAAAAAAAAAAAAAAGTTACT 1 chrVII:609317-610090 ( 69) AGAAAAAAAAAAGGAACTAAA 1 chrXIV:104618-105547 ( 12) AAGAAAAAAAATAAAGATAAA 1 chrVII:824453-825002 ( 41) AGAAAAGAAGAGAAAGGAGCA 1 chrIV:83449-83811 ( 42) TGGAAAAAGAAAAAAAATTAA 1 chrXVI:282054-283235 ( 49) AAAAAAAAAAAAGGAATAAAA 1 chrIV:928520-930414 ( 31) TGAAATGAAAAAAAAAAAGCA 1 chrXIV:715695-717218 ( 5) TAAAAAAAAAAAAAAGCATAT 1 chrX:531607-531707 ( 40) TCCAGAAAAAAAGAAAAGAAA 1 chrXIII:362963-363361 ( 19) TGAAAAAAAAAGAAAATGCCA 1 chrXI:258070-260034 ( 72) TAAAAAAAAAACAACGAAAAA 1 chrXI:430235-431237 ( 30) AGAAAAAAAAAGAGGAAATAA 1 chrIV:322181-323646 ( 12) AGAAAGAGAAACGAAGAAGAA 1 chrXIII:168683-169046 ( 69) AGAAAAAGGGAAAAAAAATAT 1 chrXII:780515-781399 ( 78) ACAAAAGGAAACAAAAACAAA 1 chrIV:465198-465631 ( 50) TAAAGAAAATAGAAAACGGAT 1 chrIII:82122-82676 ( 15) TGAAAAAAATAAAATGGTAAT 1 chrX:526211-526311 ( 57) TGAAGAAGGAAAAAGACAGAA 1 chrX:701799-701899 ( 47) ACAAAAGAAGAAAATAATTAA 1 chrV:305872-306102 ( 78) AGAAATGAAAAGAAAGTTGTA 1 chrX:702535-702635 ( 38) AGAAAAAAGGGCAAAAATGAA 1 chrXI:333636-335017 ( 28) TGCAGAGAAAAAAGAGAGAGA 1 chrIV:229826-231142 ( 24) TGAAGAAGAAAAAGAAGAAGA 1 chrV:51794-53285 ( 79) AAGAGAAGAGACAAAACAGAT 1 chrXV:384597-385053 ( 26) TGAAAAAAAAAAAATCGGAAC 1 chrX:73583-73683 ( 78) TAAAAAAAAAAGAAATCATAA 1 chrXV:1005542-1006728 ( 6) AAGAGTAAAAACAATAATAAA 1 chrXIII:408390-408859 ( 17) AAAAAAAAAATTAAAAGTAAA 1 chrIV:1488310-1490389 ( 31) TAGAGAGGAAATAAAAATAAA 1 chrXV:571595-572119 ( 77) AAAAAATAAAAAAATGTTGCA 1 chrXV:409249-409963 ( 45) AGAAATAAGAAAAATCCGGAT 1 chrIII:114335-114677 ( 41) TAAAAAAGAAATAGTAAGAAA 1 chrXV:380648-381216 ( 12) AGGAATAAAGAAAAAATCACA 1 chrXVI:842847-843399 ( 49) TGGAAAAAAAAAAAGGCTATA 1 chrVIII:236321-236857 ( 13) AGAAGAAGAATAAATTAGGAA 1 chrXI:439798-440768 ( 38) AAGAGAAAGATAAATGCAGAA 1 chrVIII:147483-148744 ( 60) TGAAATAAATAGAAACGAAAA 1 chrVII:411915-412584 ( 78) TAGAAAAAAATAAAACTTGAT 1 chrII:88909-89503 ( 67) ACAAGAAGAGATGAAAAGAAA 1 chrVII:774151-774566 ( 1) AGAATAGAGAAGAATAATGAA 1 chrXII:214690-215042 ( 46) AGAATAAAAGTAAAAAATAAA 1 chrVII:786761-788231 ( 4) AACAGAGAAGAAAAATTGAAA 1 chrVII:255192-255734 ( 57) AGAAAGGAAAGAAAAATGGCA 1 chrV:422776-423305 ( 22) ACAAGAGAAAAGAGTAAAGGA 1 chrXV:109750-111180 ( 45) TGAAGAAGGAAGAACAAAACA 1 chrIV:434007-435112 ( 54) AGGAAAGAAGATAAAATAATA 1 chrXV:1053992-1054529 ( 29) TCAAATGAGAAAAAAGTATAA 1 chrX:523130-523230 ( 16) TCAAAATAAATAAAAGAAGAT 1 chrXII:950985-953737 ( 35) ACCAGAGAAGAGAAACTTGAT 1 chrVII:545121-545955 ( 6) TCCAAAGGGAAGAAAATAAAT 1 chrXIV:102589-103234 ( 2) AGGAAAAGAGAGAAACTACAT 1 chrXII:730828-732282 ( 67) AGAAGAAAGTAGAAAACGATT 1 chrVII:555718-557619 ( 80) TACAAAAAATACAATAAATAA 1 chrXI:578771-579592 ( 1) AAGAAAAGGAAGGAAGTTAGA 1 chrXIII:797729-798240 ( 31) TGGAAGAAAAAAAATGAATTA 1 chrVII:648745-649392 ( 68) TAAAAATAAAAAGAAGGCGAT 1 chrVII:185511-185795 ( 47) AGATATAAAAAGGAAGTAGAA 1 chrVIII:237758-238354 ( 75) TAAAGATAAAAGGGAGATAAT 1 chrVIII:475484-475882 ( 51) AACAAAAAAATCGATGTTAAA 1 chrXII:1028817-1030328 ( 52) AAGAAGGAAAAGAAGGAAGCT 1 chrII:594952-595464 ( 21) TGCAGAAGAAACAAAGACGCC 1 chrXVI:700457-700676 ( 7) AGAAGTAAAAAAAGTTGTAAT 1 chrVII:930606-931172 ( 21) AACAATAAGAATAATGTAAAT 1 chrVII:149227-149398 ( 30) AAAAAAGAAATCAGTATGTAT 1 chrVII:328424-329036 ( 74) TGAAGAAAATGAGAACCTAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRAAAAAAAAAAAAARWDRAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.7426 E= 8.8e-036 94 -1289 -1289 40 15 -54 146 -1289 109 -70 22 -1289 168 -1289 -1289 -455 112 -1289 66 -355 140 -1289 -187 -123 123 -1289 22 -255 136 -1289 13 -1289 143 -1289 -17 -1289 123 -1289 -6 -174 147 -1289 -228 -155 74 -41 38 -174 147 -1289 -41 -1289 145 -1289 -28 -1289 115 -286 -187 -38 62 -70 89 -255 54 -41 -70 -9 31 -154 46 -9 66 -286 89 -123 120 -17 -187 -223 115 -286 -1289 -9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRAAAAAAAAAAAAARWDRAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 76 E= 8.8e-036 0.592105 0.000000 0.000000 0.407895 0.342105 0.131579 0.526316 0.000000 0.657895 0.118421 0.223684 0.000000 0.986842 0.000000 0.000000 0.013158 0.671053 0.000000 0.302632 0.026316 0.815789 0.000000 0.052632 0.131579 0.723684 0.000000 0.223684 0.052632 0.789474 0.000000 0.210526 0.000000 0.828947 0.000000 0.171053 0.000000 0.723684 0.000000 0.184211 0.092105 0.855263 0.000000 0.039474 0.105263 0.513158 0.144737 0.250000 0.092105 0.855263 0.000000 0.144737 0.000000 0.842105 0.000000 0.157895 0.000000 0.684211 0.026316 0.052632 0.236842 0.473684 0.118421 0.355263 0.052632 0.447368 0.144737 0.118421 0.289474 0.381579 0.065789 0.263158 0.289474 0.486842 0.026316 0.355263 0.131579 0.710526 0.171053 0.052632 0.065789 0.684211 0.026316 0.000000 0.289474 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRAAAAAAAAAAAAARWDRAA MEME-3 regular expression -------------------------------------------------------------------------------- [AT][GA][AG]A[AG]A[AG][AG]AAA[AG]AA[AT][AG][AT][ATG][AG]A[AT] -------------------------------------------------------------------------------- Time 1002.76 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:350625-351065 1.85e-04 70_[-1(8.40e-07)]_1 chrVIII:48265-48610 4.76e-01 100 chrXV:31491-31896 6.33e-01 100 chrVII:88106-89271 6.73e-01 100 chrXI:146779-147462 6.74e-01 100 chrI:166191-166604 9.44e-01 100 chrIV:1344789-1346025 9.48e-01 100 chrXVI:828880-829362 4.85e-01 100 chrXIII:551463-551685 9.70e-01 100 chrVII:411915-412584 6.35e-03 77_[+3(6.17e-06)]_2 chrVII:310612-312623 5.00e-01 100 chrXI:258070-260034 2.79e-03 71_[+3(1.13e-06)]_8 chrIV:667698-668177 9.92e-01 100 chrIII:114335-114677 2.14e-02 40_[+3(4.62e-06)]_39 chrXVI:404830-406401 6.56e-01 100 chrIV:1016922-1017477 1.01e-08 58_[-1(1.37e-11)]_13 chrXI:430235-431237 3.25e-03 32_[-3(1.13e-06)]_47 chrIX:322543-324349 6.21e-01 100 chrXIV:546605-547355 5.74e-01 100 chrIV:928520-930414 2.39e-03 30_[+3(3.56e-07)]_49 chrXII:348043-348693 6.46e-01 100 chrIX:315866-316476 8.21e-03 28_[-2(1.53e-05)]_42 chrII:266230-266711 3.99e-06 [+1(2.33e-09)]_71 chrXI:312857-314016 7.80e-06 15_[-1(8.28e-09)]_56 chrXVI:134856-135826 5.70e-02 100 chrVII:316785-317428 8.56e-01 100 chrXV:680431-681021 6.12e-01 100 chrXI:617627-618795 7.81e-01 100 chrVII:774151-774566 1.96e-09 [-3(7.43e-06)]_19_[+2(3.76e-11)]_30 chrXV:796666-798890 8.47e-01 100 chrXIII:146438-147660 8.00e-02 100 chrV:117140-118274 8.92e-01 100 chrXVI:581853-582736 8.38e-01 100 chrII:477164-477783 2.19e-04 29_[-3(5.97e-05)]_28_[-3(7.86e-08)]_\ 1 chrIV:721790-722121 1.08e-01 100 chrXV:619187-624621 7.86e-01 100 chrIV:884284-884738 9.55e-08 2_[+1(1.06e-09)]_69 chrXIII:631883-634959 8.50e-01 100 chrVI:191266-191917 2.93e-06 42_[-2(1.75e-10)]_28 chrXII:712014-712792 3.48e-01 100 chrVIII:34383-36129 1.48e-01 100 chrX:422651-422751 8.32e-06 52_[+2(1.26e-09)]_18 chrVII:185511-185795 5.73e-02 46_[+3(2.22e-05)]_33 chrVIII:147483-148744 1.44e-02 59_[+3(6.17e-06)]_20 chrXII:809723-815780 1.67e-01 100 chrXIII:253358-253571 8.62e-01 100 chrXIV:229557-230793 7.73e-01 100 chrXIV:632434-632912 2.64e-08 19_[+1(1.17e-09)]_52 chrI:222893-223078 9.93e-01 100 chrXVI:775674-776024 2.00e-01 100 chrXIII:23994-25898 1.79e-01 100 chrIV:1466145-1468490 6.41e-01 100 chrXV:514229-514737 1.31e-01 100 chrXIII:225865-226907 1.66e-01 100 chrVII:786761-788231 1.56e-02 3_[-3(8.14e-06)]_76 chrXI:431875-432970 3.94e-01 100 chrX:348816-348916 2.10e-01 100 chrVI:136785-137691 4.94e-01 100 chrXVI:282054-283235 2.37e-03 48_[-3(3.56e-07)]_31 chrV:550863-551588 6.07e-01 100 chrXI:202276-203304 3.92e-01 100 chrXII:793700-796365 5.55e-01 100 chrXI:551626-552872 2.34e-04 41_[+3(1.27e-07)]_38 chrX:639749-639849 6.20e-01 100 chrV:176914-177428 2.13e-06 19_[+1(1.19e-10)]_52 chrII:165081-165832 6.30e-01 100 chrI:130761-131975 9.33e-02 64_[-2(7.50e-05)]_6 chrXIII:306086-307219 3.94e-02 100 chrXIV:63232-64552 7.81e-01 100 chrXIII:18984-20570 5.46e-01 100 chrXII:459644-460681 4.39e-01 100 chrVII:876062-878331 3.34e-01 100 chrXI:7793-8272 8.22e-01 100 chrII:88909-89503 2.56e-02 66_[-3(6.78e-06)]_13 chrXII:950985-953737 1.58e-02 34_[-3(1.16e-05)]_45 chrIII:614-1019 2.36e-01 100 chrV:225510-225694 1.40e-02 1_[+3(4.28e-05)]_78 chrII:168350-169707 6.37e-01 100 chrII:87922-88596 7.65e-02 100 chrXII:87660-88464 1.19e-01 100 chrIII:123301-123767 9.78e-01 100 chrXVI:502882-503262 1.09e-01 100 chrV:469273-470430 5.77e-01 100 chrXIV:628155-629364 6.55e-01 100 chrVII:704976-707178 9.90e-01 100 chrXII:257660-259516 1.18e-01 100 chrXVI:377892-378457 6.92e-01 100 chrXII:837648-839407 3.40e-01 100 chrXV:899898-901231 2.90e-02 50_[+2(2.15e-05)]_20 chrVII:919798-920032 7.02e-01 100 chrVI:157904-158279 9.72e-01 100 chrX:623707-623807 6.99e-01 100 chrXV:1005542-1006728 2.02e-03 5_[+3(3.78e-06)]_74 chrVII:702897-704785 5.41e-01 100 chrXV:159146-160722 9.75e-02 100 chrVII:592117-592912 7.72e-02 100 chrXVI:214657-215145 8.20e-01 100 chrIII:149554-150189 6.77e-01 100 chrXVI:821634-822297 8.68e-01 100 chrVIII:126472-127912 2.93e-01 100 chrV:422776-423305 2.25e-02 21_[+3(8.91e-06)]_58 chrXI:518828-521078 2.46e-01 100 chrXVI:585473-587548 8.67e-02 100 chrXII:1017537-1018968 3.24e-01 100 chrXII:214690-215042 3.45e-09 45_[+3(8.14e-06)]_1_[-1(5.73e-11)]_\ 4 chrXVI:769004-769436 3.30e-06 37_[-1(2.56e-09)]_34 chrVII:914796-915267 7.84e-01 100 chrXVI:927628-928080 5.63e-04 9_[-3(9.26e-08)]_70 chrXII:1028817-1030328 6.49e-03 51_[+3(3.01e-05)]_28 chrXV:80342-81536 8.61e-01 100 chrXIII:123019-124200 5.21e-01 100 chrII:594952-595464 3.52e-02 20_[+3(3.23e-05)]_59 chrV:396724-398009 2.87e-01 100 chrVI:63984-65001 1.54e-01 100 chrIX:325754-326155 3.58e-01 100 chrXVI:930670-931031 1.18e-01 100 chrXV:464300-464791 2.99e-09 26_[+1(2.81e-12)]_45 chrXII:855136-857659 3.27e-01 100 chrIV:1401698-1403449 2.47e-01 100 chrXV:382530-383503 1.84e-01 100 chrIV:359340-359887 1.41e-04 13_[+2(1.23e-08)]_57 chrXIII:507681-509335 4.02e-01 100 chrVII:970735-973988 3.53e-02 100 chrIV:519670-519902 3.50e-11 6_[+2(3.34e-11)]_21_[-1(1.05e-07)]_\ 14 chrV:235354-237194 9.36e-01 100 chrVII:362346-364433 9.62e-02 100 chrXV:988731-989525 4.98e-01 100 chrXIII:586420-586909 1.66e-13 22_[-1(1.89e-10)]_14_[-2(6.69e-11)]_\ 5 chrXV:841525-842199 5.74e-01 100 chrX:390895-390995 4.13e-06 16_[-2(1.26e-09)]_54 chrVII:483327-483684 1.30e-01 100 chrX:233708-233808 5.38e-01 100 chrXII:546133-547630 9.84e-01 100 chrXII:95511-95898 5.05e-01 100 chrII:563237-564631 3.90e-01 100 chrXIII:511349-512254 9.60e-01 100 chrXIV:417585-418487 6.42e-01 100 chrIV:1075279-1075748 4.49e-09 9_[-1(7.99e-13)]_62 chrVII:364891-366049 4.90e-01 100 chrXI:261083-262118 4.33e-01 100 chrI:138966-139349 8.46e-07 44_[+2(1.08e-09)]_26 chrV:85134-87126 6.82e-01 100 chrXI:325930-327607 7.92e-01 100 chrII:373913-375805 9.96e-01 100 chrX:227711-227811 2.49e-01 100 chrI:28210-29152 7.52e-01 100 chrII:562581-562907 8.03e-02 100 chrX:391780-391880 6.96e-01 100 chrX:617727-617827 5.89e-09 50_[+2(8.40e-13)]_20 chrVII:824453-825002 7.15e-04 40_[+3(2.01e-07)]_39 chrXIII:807763-808539 1.11e-04 61_[-3(1.22e-08)]_18 chrVII:784166-785260 2.99e-01 100 chrXIII:378796-379580 5.10e-01 100 chrXII:975748-976159 1.81e-01 100 chrIV:722294-722900 5.97e-01 100 chrV:66783-69368 6.21e-01 100 chrVII:405482-405796 3.32e-01 100 chrVIII:374663-376039 7.30e-01 100 chrIV:217629-218083 2.44e-01 100 chrXII:282822-284018 8.09e-02 100 chrVII:845294-846102 3.62e-17 [+2(2.13e-10)]_11_[+1(2.06e-14)]_30 chrII:606201-607576 4.45e-01 100 chrIV:555302-556630 6.83e-01 100 chrVI:226385-227284 7.32e-02 100 chrXII:1002268-1003337 3.04e-02 100 chrIV:465198-465631 1.52e-03 49_[-3(1.79e-06)]_30 chrXII:898070-899740 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1.03e-01 100 chrXII:568093-571049 8.74e-01 100 chrIX:23471-25256 9.86e-01 100 chrXI:162024-162760 7.37e-01 100 chrXVI:376522-377372 7.20e-01 100 chrII:680360-681960 3.06e-01 100 chrXVI:435623-436189 1.40e-08 37_[-1(4.60e-10)]_34 chrVII:422915-423431 3.97e-02 100 chrXV:161458-161921 4.31e-01 100 chrIV:538838-539557 8.78e-01 100 chrXIII:759734-763147 6.89e-02 100 chrVII:541733-542120 8.29e-08 15_[+1(1.19e-10)]_56 chrXIII:131604-132082 3.92e-06 11_[+3(4.91e-05)]_[-1(2.41e-08)]_39 chrVII:328424-329036 1.34e-01 73_[+3(6.36e-05)]_6 chrXI:46724-46987 1.21e-01 100 chrV:51794-53285 1.80e-02 78_[+3(3.41e-06)]_1 chrVIII:74766-76544 6.69e-01 100 chrIII:161998-163358 7.55e-02 79_[+3(4.00e-05)] chrIX:141218-142427 1.23e-01 100 chrXV:1053992-1054529 2.37e-02 28_[-3(1.06e-05)]_51 chrXIV:278544-279883 7.18e-01 100 chrXVI:98497-98989 2.80e-01 100 chrV:61051-62153 1.30e-01 100 chrII:478953-479555 2.42e-05 66_[+3(6.31e-09)]_13 chrXV:867010-868156 8.23e-01 100 chrIV:411345-411531 3.84e-01 100 chrVII:938972-939735 5.72e-01 100 chrVI:101183-101846 2.06e-01 100 chrXV:758933-759572 2.14e-01 100 chrVIII:388649-388972 5.74e-01 100 chrV:306316-306933 3.70e-02 49_[-2(4.53e-05)]_21 chrXII:424052-424731 1.88e-01 100 chrXIII:195938-196284 3.03e-08 7_[-1(2.81e-12)]_64 chrXV:722797-724730 4.74e-01 100 chrII:413749-415330 2.79e-01 100 chrXIV:499588-500772 8.60e-01 100 chrIV:1362035-1362938 7.82e-01 100 chrVIII:422907-423811 1.40e-01 100 chrXII:721770-722404 5.05e-01 100 chrIV:1245686-1246179 9.43e-01 100 chrXIV:234254-235705 1.20e-01 100 chrVII:544414-544922 1.65e-01 [-2(7.69e-05)]_70 chrVII:846905-848385 2.40e-01 100 chrIX:380132-381733 4.09e-05 51_[+3(5.00e-09)]_28 chrXIII:115527-115832 7.22e-01 100 chrXI:379709-381360 1.17e-01 100 chrVII:227253-228380 9.95e-01 100 chrII:59577-60793 5.56e-01 100 chrXII:522621-523708 4.77e-01 100 chrII:555870-558202 5.08e-01 100 chrXIII:372184-372637 2.16e-01 100 chrIV:221069-222353 3.88e-01 100 chrXIV:666326-667156 8.61e-01 100 chrXIV:771668-772400 6.28e-01 100 chrIV:322181-323646 7.83e-04 11_[+3(1.43e-06)]_68 chrXV:832264-832864 3.20e-01 100 chrXI:231053-231672 4.71e-02 100 chrVI:95474-95894 6.90e-02 100 chrVII:1048676-1051583 7.78e-01 100 chrX:605867-605967 3.54e-01 100 chrXI:208177-209359 8.16e-01 100 chrXVI:555327-556355 7.93e-01 100 chrXV:882698-884167 2.44e-01 100 chrVIII:379316-380285 1.37e-01 100 chrVII:366211-366720 2.10e-01 100 chrIV:758464-759645 3.06e-01 100 chrXIII:408390-408859 7.78e-07 17_[+3(2.24e-06)]_7_[-1(1.37e-07)]_\ 26 chrVIII:145401-146453 7.43e-01 100 chrXVI:678554-679401 8.98e-01 100 chrXV:896701-898367 5.68e-01 100 chrVII:968832-969205 3.43e-01 100 chrV:77502-79970 1.95e-01 100 chrIV:410030-410790 1.68e-12 18_[+2(3.76e-11)]_13_[+1(3.71e-09)]_\ 10 chrVIII:16556-18231 3.81e-01 100 chrXIII:747784-748309 6.11e-01 100 chrVII:930606-931172 4.79e-02 20_[+3(4.59e-05)]_59 chrI:71716-73693 3.31e-01 100 chrXI:457863-458960 9.91e-01 100 chrXIV:495290-495766 1.34e-01 100 chrXII:96079-96293 3.46e-01 100 chrVIII:236321-236857 1.60e-02 12_[+3(6.17e-06)]_67 chrI:190183-190550 5.17e-01 100 chrXIII:768199-768411 8.91e-01 100 chrXIII:873848-874335 4.10e-01 100 chrVII:730978-731402 6.52e-07 40_[+1(1.17e-09)]_31 chrIV:229826-231142 1.22e-02 23_[+3(3.41e-06)]_56 chrIV:1354396-1355601 2.93e-04 49_[-3(5.60e-08)]_30 chrVII:94291-94732 9.58e-01 100 chrII:236497-237463 8.05e-01 100 chrVII:437079-438273 1.10e-01 100 chrXIII:701724-703311 4.50e-01 100 chrXI:578771-579592 1.85e-02 [+3(2.22e-05)]_79 chrV:241957-242304 1.34e-01 100 chrX:415800-415900 5.01e-02 100 chrX:453337-453437 2.45e-01 100 chrXV:282012-282529 4.23e-01 100 chrXI:109225-110477 9.36e-01 100 chrII:642854-643234 7.11e-08 13_[-1(4.60e-10)]_58 chrXIV:602093-602534 5.89e-10 48_[+2(7.68e-14)]_22 chrVII:149227-149398 1.20e-01 29_[+3(5.60e-05)]_50 chrVII:609317-610090 1.55e-03 68_[+3(2.01e-07)]_11 chrVII:438965-440080 1.91e-01 100 chrVII:21648-22128 1.66e-01 100 chrXII:92428-92712 5.31e-07 27_[+2(1.08e-09)]_43 chrXII:374220-374766 4.35e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************