******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--RIM101/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:81737-82349 1.0000 100 chrI:138974-139336 1.0000 100 chrI:141184-141896 1.0000 100 chrI:142272-143351 1.0000 100 chrI:166181-166603 1.0000 100 chrI:180945-181463 1.0000 100 chrI:182137-183148 1.0000 100 chrII:9360-9907 1.0000 100 chrII:36244-36575 1.0000 100 chrII:44937-45350 1.0000 100 chrII:59830-62639 1.0000 100 chrII:89287-89968 1.0000 100 chrII:165068-165454 1.0000 100 chrII:167590-168194 1.0000 100 chrII:180473-180785 1.0000 100 chrII:180992-181652 1.0000 100 chrII:197258-197822 1.0000 100 chrII:226988-227345 1.0000 100 chrII:266206-266672 1.0000 100 chrII:326544-327099 1.0000 100 chrII:331792-332741 1.0000 100 chrII:347406-348219 1.0000 100 chrII:350609-351040 1.0000 100 chrII:405685-406209 1.0000 100 chrII:415568-416685 1.0000 100 chrII:444750-445203 1.0000 100 chrII:477027-477724 1.0000 100 chrII:592355-593639 1.0000 100 chrII:604069-606122 1.0000 100 chrII:642838-643252 1.0000 100 chrII:644936-645861 1.0000 100 chrIII:132-1017 1.0000 100 chrIII:82402-82679 1.0000 100 chrIII:123367-123790 1.0000 100 chrIII:127592-127866 1.0000 100 chrIII:142627-142966 1.0000 100 chrIII:149724-150179 1.0000 100 chrIII:151134-151577 1.0000 100 chrIII:163457-163896 1.0000 100 chrIII:168138-168529 1.0000 100 chrIII:178358-178673 1.0000 100 chrIII:227751-228214 1.0000 100 chrIII:295329-295992 1.0000 100 chrIV:45190-45883 1.0000 100 chrIV:83436-84055 1.0000 100 chrIV:117170-117892 1.0000 100 chrIV:130227-131004 1.0000 100 chrIV:217234-217507 1.0000 100 chrIV:221683-222637 1.0000 100 chrIV:229456-230506 1.0000 100 chrIV:308032-309415 1.0000 100 chrIV:321677-321925 1.0000 100 chrIV:340605-341631 1.0000 100 chrIV:358089-358497 1.0000 100 chrIV:359355-359753 1.0000 100 chrIV:382385-384788 1.0000 100 chrIV:409980-410782 1.0000 100 chrIV:411254-412979 1.0000 100 chrIV:434126-434989 1.0000 100 chrIV:437559-438101 1.0000 100 chrIV:488412-489098 1.0000 100 chrIV:491007-491243 1.0000 100 chrIV:519660-519900 1.0000 100 chrIV:520734-521107 1.0000 100 chrIV:568537-569359 1.0000 100 chrIV:578865-580416 1.0000 100 chrIV:619725-620212 1.0000 100 chrIV:645052-645364 1.0000 100 chrIV:667358-668196 1.0000 100 chrIV:757820-758006 1.0000 100 chrIV:758452-759645 1.0000 100 chrIV:802586-803001 1.0000 100 chrIV:808507-810346 1.0000 100 chrIV:835752-836247 1.0000 100 chrIV:884279-884571 1.0000 100 chrIV:946155-946609 1.0000 100 chrIV:980731-981165 1.0000 100 chrIV:992691-993026 1.0000 100 chrIV:1016979-1017493 1.0000 100 chrIV:1075329-1075751 1.0000 100 chrIV:1094779-1094973 1.0000 100 chrIV:1095146-1095638 1.0000 100 chrIV:1150730-1151167 1.0000 100 chrIV:1175588-1176057 1.0000 100 chrIV:1201562-1201982 1.0000 100 chrIV:1233434-1234482 1.0000 100 chrIV:1256861-1257281 1.0000 100 chrIV:1300172-1301327 1.0000 100 chrIV:1305372-1305809 1.0000 100 chrIV:1352352-1353371 1.0000 100 chrIV:1355752-1355963 1.0000 100 chrIV:1359428-1359985 1.0000 100 chrIV:1401258-1403085 1.0000 100 chrIV:1450736-1451462 1.0000 100 chrIV:1461368-1461825 1.0000 100 chrIX:23828-25263 1.0000 100 chrIX:67769-68484 1.0000 100 chrIX:99639-100044 1.0000 100 chrIX:174511-175190 1.0000 100 chrIX:183323-183688 1.0000 100 chrIX:197363-197780 1.0000 100 chrIX:210523-211020 1.0000 100 chrIX:248516-248993 1.0000 100 chrIX:254236-254554 1.0000 100 chrIX:257361-258094 1.0000 100 chrIX:299963-300502 1.0000 100 chrIX:315251-315867 1.0000 100 chrIX:316037-316610 1.0000 100 chrIX:322908-324355 1.0000 100 chrIX:325759-326128 1.0000 100 chrIX:336069-336628 1.0000 100 chrIX:370217-370610 1.0000 100 chrV:41587-42644 1.0000 100 chrV:53525-53897 1.0000 100 chrV:61213-62144 1.0000 100 chrV:85130-86196 1.0000 100 chrV:86410-86892 1.0000 100 chrV:99888-100322 1.0000 100 chrV:117641-118311 1.0000 100 chrV:130847-131340 1.0000 100 chrV:135140-136067 1.0000 100 chrV:138461-139958 1.0000 100 chrV:140217-140903 1.0000 100 chrV:176898-177443 1.0000 100 chrV:249804-250518 1.0000 100 chrV:288155-288752 1.0000 100 chrV:305819-306908 1.0000 100 chrV:311719-312277 1.0000 100 chrV:354691-355308 1.0000 100 chrV:363681-364484 1.0000 100 chrV:396161-396580 1.0000 100 chrV:422837-424293 1.0000 100 chrV:431039-431994 1.0000 100 chrV:434415-435162 1.0000 100 chrV:435656-436000 1.0000 100 chrV:438466-438937 1.0000 100 chrV:441803-442675 1.0000 100 chrV:443075-443375 1.0000 100 chrV:469134-470426 1.0000 100 chrV:487066-487598 1.0000 100 chrV:492238-492548 1.0000 100 chrV:550890-551561 1.0000 100 chrVI:65007-65909 1.0000 100 chrVI:95471-95910 1.0000 100 chrVI:101157-101481 1.0000 100 chrVI:136256-137680 1.0000 100 chrVI:157900-158260 1.0000 100 chrVI:162032-162374 1.0000 100 chrVI:162592-162834 1.0000 100 chrVI:167197-167663 1.0000 100 chrVI:180643-181245 1.0000 100 chrVI:190954-191783 1.0000 100 chrVI:210475-211138 1.0000 100 chrVI:220480-221465 1.0000 100 chrVI:221749-222239 1.0000 100 chrVI:223265-224130 1.0000 100 chrVI:226388-227262 1.0000 100 chrVII:311-924 1.0000 100 chrVII:1139-2136 1.0000 100 chrVII:110275-110779 1.0000 100 chrVII:115343-115713 1.0000 100 chrVII:122015-122400 1.0000 100 chrVII:149102-149511 1.0000 100 chrVII:184634-185793 1.0000 100 chrVII:205329-205746 1.0000 100 chrVII:254095-254724 1.0000 100 chrVII:277027-277377 1.0000 100 chrVII:287173-287724 1.0000 100 chrVII:310429-311922 1.0000 100 chrVII:319230-320163 1.0000 100 chrVII:328404-329523 1.0000 100 chrVII:364897-366570 1.0000 100 chrVII:371227-371483 1.0000 100 chrVII:405476-405823 1.0000 100 chrVII:411504-412586 1.0000 100 chrVII:422890-423368 1.0000 100 chrVII:438584-438889 1.0000 100 chrVII:440575-441105 1.0000 100 chrVII:531260-531796 1.0000 100 chrVII:534147-535174 1.0000 100 chrVII:541723-542130 1.0000 100 chrVII:544419-544851 1.0000 100 chrVII:555188-555860 1.0000 100 chrVII:561477-561701 1.0000 100 chrVII:648772-649355 1.0000 100 chrVII:661545-661937 1.0000 100 chrVII:700404-701243 1.0000 100 chrVII:706942-707170 1.0000 100 chrVII:726162-726760 1.0000 100 chrVII:726943-728258 1.0000 100 chrVII:730970-731439 1.0000 100 chrVII:736212-736712 1.0000 100 chrVII:738931-739466 1.0000 100 chrVII:771743-772241 1.0000 100 chrVII:774123-774584 1.0000 100 chrVII:779400-779930 1.0000 100 chrVII:788139-788731 1.0000 100 chrVII:789053-789292 1.0000 100 chrVII:794062-794504 1.0000 100 chrVII:823350-823686 1.0000 100 chrVII:828406-828966 1.0000 100 chrVII:845319-846021 1.0000 100 chrVII:856739-856931 1.0000 100 chrVII:857100-857886 1.0000 100 chrVII:876198-878140 1.0000 100 chrVII:878595-879079 1.0000 100 chrVII:914879-916174 1.0000 100 chrVII:930567-931618 1.0000 100 chrVII:1004021-1004409 1.0000 100 chrVIII:34550-35100 1.0000 100 chrVIII:62518-62898 1.0000 100 chrVIII:74795-75847 1.0000 100 chrVIII:103749-104663 1.0000 100 chrVIII:115981-116388 1.0000 100 chrVIII:120221-121637 1.0000 100 chrVIII:125907-126311 1.0000 100 chrVIII:134139-134790 1.0000 100 chrVIII:144524-146460 1.0000 100 chrVIII:148960-149488 1.0000 100 chrVIII:174364-175975 1.0000 100 chrVIII:214141-214333 1.0000 100 chrVIII:237777-238134 1.0000 100 chrVIII:296748-297283 1.0000 100 chrVIII:358280-358784 1.0000 100 chrVIII:374698-376234 1.0000 100 chrVIII:382917-383323 1.0000 100 chrVIII:388697-388978 1.0000 100 chrVIII:451378-452658 1.0000 100 chrVIII:466814-467294 1.0000 100 chrVIII:475566-475898 1.0000 100 chrVIII:505814-506225 1.0000 100 chrX:59090-59380 1.0000 100 chrX:73399-74586 1.0000 100 chrX:74889-75720 1.0000 100 chrX:90025-90442 1.0000 100 chrX:115549-116279 1.0000 100 chrX:157481-157837 1.0000 100 chrX:196407-197435 1.0000 100 chrX:204558-205047 1.0000 100 chrX:233704-234158 1.0000 100 chrX:353997-354462 1.0000 100 chrX:355185-355735 1.0000 100 chrX:374227-374878 1.0000 100 chrX:378206-378546 1.0000 100 chrX:390881-391349 1.0000 100 chrX:391817-392097 1.0000 100 chrX:396602-397028 1.0000 100 chrX:414795-415267 1.0000 100 chrX:415700-416234 1.0000 100 chrX:422723-423215 1.0000 100 chrX:424299-424708 1.0000 100 chrX:517461-518085 1.0000 100 chrX:523837-524365 1.0000 100 chrX:531570-532292 1.0000 100 chrX:538016-538735 1.0000 100 chrX:540963-542015 1.0000 100 chrX:542785-543267 1.0000 100 chrX:607926-608110 1.0000 100 chrX:617703-618114 1.0000 100 chrX:651211-651587 1.0000 100 chrX:651913-652592 1.0000 100 chrX:663758-664338 1.0000 100 chrX:703267-703681 1.0000 100 chrX:745064-745508 1.0000 100 chrXI:818-1011 1.0000 100 chrXI:46723-47008 1.0000 100 chrXI:67090-68031 1.0000 100 chrXI:74386-74796 1.0000 100 chrXI:83980-84791 1.0000 100 chrXI:108355-110121 1.0000 100 chrXI:140745-141439 1.0000 100 chrXI:158242-159258 1.0000 100 chrXI:162285-162714 1.0000 100 chrXI:202480-203299 1.0000 100 chrXI:219574-220102 1.0000 100 chrXI:302710-303184 1.0000 100 chrXI:307939-308454 1.0000 100 chrXI:312436-314018 1.0000 100 chrXI:334334-334946 1.0000 100 chrXI:379711-380018 1.0000 100 chrXI:382208-382441 1.0000 100 chrXI:457609-459012 1.0000 100 chrXI:490746-491208 1.0000 100 chrXI:513237-513584 1.0000 100 chrXI:517788-518064 1.0000 100 chrXI:558691-559360 1.0000 100 chrXI:578698-579306 1.0000 100 chrXI:618724-619303 1.0000 100 chrXII:48720-49222 1.0000 100 chrXII:92299-92878 1.0000 100 chrXII:97177-97838 1.0000 100 chrXII:167769-168235 1.0000 100 chrXII:214645-215059 1.0000 100 chrXII:241645-242011 1.0000 100 chrXII:366035-366559 1.0000 100 chrXII:374207-374670 1.0000 100 chrXII:424146-424476 1.0000 100 chrXII:426845-427437 1.0000 100 chrXII:448537-448841 1.0000 100 chrXII:459595-460686 1.0000 100 chrXII:498346-499887 1.0000 100 chrXII:592343-593000 1.0000 100 chrXII:605133-605626 1.0000 100 chrXII:628161-629090 1.0000 100 chrXII:636751-639863 1.0000 100 chrXII:656853-657210 1.0000 100 chrXII:673534-675322 1.0000 100 chrXII:713169-714144 1.0000 100 chrXII:730898-732288 1.0000 100 chrXII:734485-734930 1.0000 100 chrXII:781458-781876 1.0000 100 chrXII:783910-784464 1.0000 100 chrXII:793704-795278 1.0000 100 chrXII:796401-797500 1.0000 100 chrXII:818509-819145 1.0000 100 chrXII:837939-839327 1.0000 100 chrXII:856459-857294 1.0000 100 chrXII:875060-875609 1.0000 100 chrXII:897628-899016 1.0000 100 chrXII:921742-923823 1.0000 100 chrXII:932081-932511 1.0000 100 chrXII:962847-963259 1.0000 100 chrXII:975746-976177 1.0000 100 chrXII:1018136-1019882 1.0000 100 chrXII:1028182-1028588 1.0000 100 chrXII:1051933-1052204 1.0000 100 chrXIII:91388-92065 1.0000 100 chrXIII:131658-132111 1.0000 100 chrXIII:145744-146268 1.0000 100 chrXIII:159312-159773 1.0000 100 chrXIII:168236-169021 1.0000 100 chrXIII:195958-196289 1.0000 100 chrXIII:224967-225751 1.0000 100 chrXIII:253397-253604 1.0000 100 chrXIII:259056-259439 1.0000 100 chrXIII:290325-291120 1.0000 100 chrXIII:296338-298017 1.0000 100 chrXIII:320968-321316 1.0000 100 chrXIII:352102-352758 1.0000 100 chrXIII:362946-363263 1.0000 100 chrXIII:372175-372651 1.0000 100 chrXIII:378855-379987 1.0000 100 chrXIII:420331-420858 1.0000 100 chrXIII:463346-464768 1.0000 100 chrXIII:480396-480812 1.0000 100 chrXIII:504923-505232 1.0000 100 chrXIII:550080-553098 1.0000 100 chrXIII:572258-572488 1.0000 100 chrXIII:572685-573300 1.0000 100 chrXIII:586403-586915 1.0000 100 chrXIII:626156-626621 1.0000 100 chrXIII:626789-627718 1.0000 100 chrXIII:732004-732487 1.0000 100 chrXIII:747760-748129 1.0000 100 chrXIII:753232-754217 1.0000 100 chrXIII:754467-755557 1.0000 100 chrXIII:768197-768418 1.0000 100 chrXIII:808121-808549 1.0000 100 chrXIII:837728-838228 1.0000 100 chrXIII:859288-860848 1.0000 100 chrXIII:872685-873001 1.0000 100 chrXIV:61977-64393 1.0000 100 chrXIV:96039-96518 1.0000 100 chrXIV:102581-103542 1.0000 100 chrXIV:104611-106591 1.0000 100 chrXIV:241409-241769 1.0000 100 chrXIV:330500-331079 1.0000 100 chrXIV:374641-375094 1.0000 100 chrXIV:392294-393224 1.0000 100 chrXIV:442782-443236 1.0000 100 chrXIV:444470-444763 1.0000 100 chrXIV:495207-495649 1.0000 100 chrXIV:525080-525261 1.0000 100 chrXIV:546544-547367 1.0000 100 chrXIV:560282-560815 1.0000 100 chrXIV:568054-569053 1.0000 100 chrXIV:569660-570167 1.0000 100 chrXIV:602092-602526 1.0000 100 chrXIV:619770-620045 1.0000 100 chrXIV:631704-632125 1.0000 100 chrXIV:632413-632827 1.0000 100 chrXIV:725754-726334 1.0000 100 chrXIV:783561-784315 1.0000 100 chrXV:79734-80131 1.0000 100 chrXV:92700-94780 1.0000 100 chrXV:110890-111722 1.0000 100 chrXV:113499-113877 1.0000 100 chrXV:114318-115078 1.0000 100 chrXV:161142-161766 1.0000 100 chrXV:167972-168466 1.0000 100 chrXV:216284-216706 1.0000 100 chrXV:226444-226892 1.0000 100 chrXV:228076-228540 1.0000 100 chrXV:253827-254102 1.0000 100 chrXV:274472-275017 1.0000 100 chrXV:281981-282561 1.0000 100 chrXV:287814-288384 1.0000 100 chrXV:300903-301291 1.0000 100 chrXV:340159-340598 1.0000 100 chrXV:353934-354313 1.0000 100 chrXV:438469-439403 1.0000 100 chrXV:439823-440020 1.0000 100 chrXV:444674-446219 1.0000 100 chrXV:464293-465437 1.0000 100 chrXV:487459-487775 1.0000 100 chrXV:504939-505478 1.0000 100 chrXV:506127-506734 1.0000 100 chrXV:571680-572124 1.0000 100 chrXV:594318-594647 1.0000 100 chrXV:663529-664531 1.0000 100 chrXV:678627-679139 1.0000 100 chrXV:710129-710800 1.0000 100 chrXV:722909-724646 1.0000 100 chrXV:779698-780873 1.0000 100 chrXV:853407-854770 1.0000 100 chrXV:866524-867245 1.0000 100 chrXV:877410-877997 1.0000 100 chrXV:925177-925420 1.0000 100 chrXV:960948-963174 1.0000 100 chrXV:968143-968443 1.0000 100 chrXV:976285-976674 1.0000 100 chrXV:978834-979107 1.0000 100 chrXV:979754-981248 1.0000 100 chrXV:1025718-1026051 1.0000 100 chrXV:1028233-1029292 1.0000 100 chrXV:1079128-1079588 1.0000 100 chrXVI:55861-56414 1.0000 100 chrXVI:75504-76739 1.0000 100 chrXVI:188654-189324 1.0000 100 chrXVI:210059-210457 1.0000 100 chrXVI:302676-302890 1.0000 100 chrXVI:338471-339209 1.0000 100 chrXVI:378664-378973 1.0000 100 chrXVI:406216-406551 1.0000 100 chrXVI:432690-434105 1.0000 100 chrXVI:435619-436175 1.0000 100 chrXVI:519990-520526 1.0000 100 chrXVI:559841-560278 1.0000 100 chrXVI:571998-572524 1.0000 100 chrXVI:581835-582460 1.0000 100 chrXVI:622158-622853 1.0000 100 chrXVI:689396-689838 1.0000 100 chrXVI:699803-700382 1.0000 100 chrXVI:731655-732324 1.0000 100 chrXVI:744098-744598 1.0000 100 chrXVI:769035-769465 1.0000 100 chrXVI:775660-776150 1.0000 100 chrXVI:794450-796325 1.0000 100 chrXVI:810584-811299 1.0000 100 chrXVI:819342-820095 1.0000 100 chrXVI:856731-857100 1.0000 100 chrXVI:860145-860715 1.0000 100 chrXVI:880129-880556 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--RIM101/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--RIM101/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--RIM101/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 453 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 45300 N= 453 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.302 C 0.198 G 0.198 T 0.302 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--RIM101/background): A 0.308 C 0.192 G 0.192 T 0.308 ******************************************************************************** ******************************************************************************** MOTIF AYCVKRAGRTCMBSGGTTCGAYYCC MEME-1 width = 25 sites = 62 llr = 1197 E-value = 1.9e-240 ******************************************************************************** -------------------------------------------------------------------------------- Motif AYCVKRAGRTCMBSGGTTCGAYYCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 8::3157142:3:12::::2a2::: pos.-specific C 1383:::1:18544::::a::25a7 probability G :22354376::1357a:::8:2::: matrix T :5:131:1:72:31::aa:::44:3 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * * **** * Relative 1.4 * * ****** * Entropy 1.2 * * * ****** * (27.9 bits) 1.0 * * *** * ******* *** 0.7 * * ******* ******** *** 0.5 *** ***************** *** 0.2 ********************* *** 0.0 ------------------------- Multilevel ATCGGAAGGTCCCGGGTTCGATCCC consensus CGATGG A TAGCA CT T sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCVKRAGRTCMBSGGTTCGAYYCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------- chrXVI:880129-880556 - 15 4.86e-12 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCC GCTAGAGACC chrXIV:569660-570167 - 15 4.86e-12 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCC GCTAGAGACC chrXII:1051933-1052204 - 64 4.86e-12 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCC GCTAGAGACC chrVII:738931-739466 + 12 4.86e-12 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCC GCTAGAGACC chrV:443075-443375 - 38 4.86e-12 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCC GCTAGAGACC chrII:197258-197822 + 42 4.86e-12 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCC GCTAGAGACC chrIII:123367-123790 - 60 1.22e-11 TCGCTTAGGG TGCGGGAGGTCCCGGGTTCGAGTCC CGGCTCGCCC chrXVI:581835-582460 + 2 2.84e-11 A ATCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrX:414795-415267 + 22 2.84e-11 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrIX:299963-300502 - 57 2.84e-11 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrIV:1201562-1201982 + 65 2.84e-11 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrXIII:747760-748129 - 9 4.24e-11 CTGACTTCTA ATCAGAAGATTATGGGTTCGACCCC CATCGTGA chrXI:162285-162714 - 49 4.24e-11 CTGACTTCTA ATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrX:374227-374878 - 15 4.24e-11 CTGACTTCTA ATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrIV:568537-569359 + 20 4.24e-11 CTGACTTCTA ATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrII:405685-406209 + 17 4.24e-11 CTGACTTCTA ATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrXVI:860145-860715 + 34 8.05e-11 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrXV:226444-226892 - 4 8.05e-11 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCC GGG chrXII:448537-448841 - 22 8.05e-11 TTCGGTTTTG ATCCGGACAACCCCGGTTCGAATCC GGGTAGGACC chrVII:845319-846021 + 64 8.05e-11 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrIV:992691-993026 + 59 8.05e-11 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrIV:645052-645364 - 6 8.05e-11 TTCGGTTTTG ATCCGGACAACCCCGGTTCGAATCC GGGTA chrIII:168138-168529 - 29 8.05e-11 TTCGGTTTTG ATCCGGACAACCCCGGTTCGAATCC GGGTAGGACC chrXVI:769035-769465 - 18 9.11e-11 AAGCAAGGAT ACCGAAATGTCAGGGGTTCGAGCCC CCTATGAGGA chrXI:578698-579306 + 73 9.11e-11 AAGCAAGGAT ACCGAAATGTCAGGGGTTCGAGCCC CCT chrVII:115343-115713 + 70 9.11e-11 AAGCAAGGAT ACCGAAATGTCAGGGGTTCGAGCCC CCTATG chrVII:541723-542130 + 10 1.31e-10 CACGCTTTC ACCGTGGAGACCGGGGTTCGACTCC CCGTATCGGA chrV:487066-487598 - 60 1.31e-10 TCACGCTTTC ACCGTGGAGACCGGGGTTCGACTCC CCGTATCGGA chrV:354691-355308 + 21 1.31e-10 TCACGCTTTC ACCGTGGAGACCGGGGTTCGACTCC CCGTATCGGA chrV:176898-177443 + 15 1.31e-10 TCACGCTTTC ACCGTGGAGACCGGGGTTCGACTCC CCGTATCGGA chrV:130847-131340 - 50 1.31e-10 TTCGGTTTTG ATCCGAACAACCCCGGTTCGAATCC GGGTAAGACC chrIV:1016979-1017493 - 32 1.31e-10 TCACGTTCTC ACCGTGGAGACCGGGGTTCGACTCC CCGCTTCGGA chrXIII:586403-586915 - 38 6.86e-10 CTGCTTAACA CGCAGAACGTCCCCAGTTCGATCCT GGGCGAAATC chrXIII:420331-420858 - 55 6.86e-10 CTGCTTAACA CGCAGAACGTCCCCAGTTCGATCCT GGGCGAAATC chrXI:307939-308454 - 9 6.86e-10 CTGCTTAACA CGCAGAACGTCCCCAGTTCGATCCT GGGCGAAA chrX:378206-378546 + 72 6.86e-10 CTGCTTAACA CGCAGAACGTCCCCAGTTCGATCCT GGGC chrVII:823350-823686 + 52 6.86e-10 CTGCTTAACA CGCAGAACGTCCCCAGTTCGATCCT GGGCGAAATC chrVIII:475566-475898 - 35 1.24e-09 TGCCTTCACA CGGCAAAGGTCCCGAGTTCGATCCT CGGTTGGAAC chrII:326544-327099 - 32 1.37e-09 CGCCTTTACA CGGCGAAGATCCCGAGTTCGAACCT CGGTTGGATC chrII:266206-266672 + 26 1.82e-09 CACACTAGTA ATGTGGAGATCATCGGTTCAAATCC GATTGGAAGC chrVIII:358280-358784 - 7 1.99e-09 CGGTCAAGTT ATCTGGAGGTCCTGTGTTCGATCCA CAGAAT chrIV:1095146-1095638 - 39 1.99e-09 TGGTCAAGAT ATCTGGAGGTCCTGTGTTCGATCCA CAGAGTTCGC chrXII:374207-374670 + 4 2.39e-09 CGA ACCAGAAGATTCCAGGTTCAAGTCC TGGCGGGGAA chrV:492238-492548 - 20 2.39e-09 CTGGCTACGA ACCAGAAGATTCCAGGTTCAAGTCC TGGCGGGGAA chrIV:619725-620212 - 62 2.39e-09 CTGGCTACGA ACCAGAAGATTCCAGGTTCAAGTCC TGGCGGGGAA chrXV:976285-976674 + 29 2.86e-09 CAGTCTCATA ATCTGAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrX:422723-423215 + 55 2.86e-09 CAGTCTCATA ATCTGAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrXIV:96039-96518 - 24 3.13e-09 CCACCCTTCC AAGGTGGGGACACGGGTTCGATTCT CGTACCGCTC chrVII:779400-779930 + 37 3.13e-09 CCACCCTTCC AAGGTGGGGACACGGGTTCGATTCT CGTACCGCTC chrXIII:195958-196289 - 6 7.25e-09 AGACAAAGCA TGCGAGAGGCCCTGGGTTCAATTCC CAGCT chrX:415700-416234 - 25 7.85e-09 TAAGATTGCA ATCGAAGGGTTGCAGGTTCAATTCC TGTCCGTTTC chrXIV:632413-632827 + 67 1.07e-08 GCGACTGTTA ATCGCAAGATCGTGAGTTCAACCCT CACTGGGGT chrVII:730970-731439 + 21 1.07e-08 GCGACTGTTA ATCGCAAGATCGTGAGTTCAACCCT CACTGGGGTC chrXIII:320968-321316 - 66 1.16e-08 TCCCTTAGCA TGGGAGAGGTCTCCGGTTCGATTCC GGACTCGTCC chrXIII:837728-838228 + 53 1.25e-08 CCACTACGAA ATCTTGAGATCGGGCGTTCGACTCG CCCCCGGGAG chrIV:946155-946609 + 33 1.25e-08 TCACTACGAA ATCTTGAGATCGGGCGTTCGACTCG CCCCCGGGAG chrXVI:435619-436175 - 57 2.57e-08 CAGATTGCAA ATCTGTTGGTCCTTAGTTCGATCCT GAGTGCGAGC chrII:642838-643252 - 23 2.57e-08 CAGATTGCAA ATCTGTTGGTCCTTAGTTCGATCCT GAGTGCGAGC chrXVI:338471-339209 - 69 2.94e-08 GCTCATA ACCCTGATGTCCTCGGATCGAAACC GAGCGGCGCT chrIII:149724-150179 + 55 2.94e-08 AGGGCTCATA ACCCTGATGTCCTCGGATCGAAACC GAGCGGCGCT chrVIII:466814-467294 + 22 3.36e-08 TGCACTTGTA ATGCAAAGGTCGCTAGTTCAATTCT GGCAGGTGGC chrXVI:744098-744598 + 22 5.97e-08 TGCACTTGTA ATGCAAAGGTCGTTAGTTCAATTCT GACAGGTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCVKRAGRTCMBSGGTTCGAYYCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:880129-880556 4.9e-12 14_[-1]_61 chrXIV:569660-570167 4.9e-12 14_[-1]_61 chrXII:1051933-1052204 4.9e-12 63_[-1]_12 chrVII:738931-739466 4.9e-12 11_[+1]_64 chrV:443075-443375 4.9e-12 37_[-1]_38 chrII:197258-197822 4.9e-12 41_[+1]_34 chrIII:123367-123790 1.2e-11 59_[-1]_16 chrXVI:581835-582460 2.8e-11 1_[+1]_74 chrX:414795-415267 2.8e-11 21_[+1]_54 chrIX:299963-300502 2.8e-11 56_[-1]_19 chrIV:1201562-1201982 2.8e-11 64_[+1]_11 chrXIII:747760-748129 4.2e-11 8_[-1]_67 chrXI:162285-162714 4.2e-11 48_[-1]_27 chrX:374227-374878 4.2e-11 14_[-1]_61 chrIV:568537-569359 4.2e-11 19_[+1]_56 chrII:405685-406209 4.2e-11 16_[+1]_59 chrXVI:860145-860715 8e-11 33_[+1]_42 chrXV:226444-226892 8e-11 3_[-1]_72 chrXII:448537-448841 8e-11 21_[-1]_54 chrVII:845319-846021 8e-11 63_[+1]_12 chrIV:992691-993026 8e-11 58_[+1]_17 chrIV:645052-645364 8e-11 5_[-1]_70 chrIII:168138-168529 8e-11 28_[-1]_47 chrXVI:769035-769465 9.1e-11 17_[-1]_58 chrXI:578698-579306 9.1e-11 72_[+1]_3 chrVII:115343-115713 9.1e-11 69_[+1]_6 chrVII:541723-542130 1.3e-10 9_[+1]_66 chrV:487066-487598 1.3e-10 59_[-1]_16 chrV:354691-355308 1.3e-10 20_[+1]_55 chrV:176898-177443 1.3e-10 14_[+1]_61 chrV:130847-131340 1.3e-10 49_[-1]_26 chrIV:1016979-1017493 1.3e-10 31_[-1]_44 chrXIII:586403-586915 6.9e-10 37_[-1]_38 chrXIII:420331-420858 6.9e-10 54_[-1]_21 chrXI:307939-308454 6.9e-10 8_[-1]_67 chrX:378206-378546 6.9e-10 71_[+1]_4 chrVII:823350-823686 6.9e-10 51_[+1]_24 chrVIII:475566-475898 1.2e-09 34_[-1]_41 chrII:326544-327099 1.4e-09 31_[-1]_44 chrII:266206-266672 1.8e-09 25_[+1]_50 chrVIII:358280-358784 2e-09 6_[-1]_69 chrIV:1095146-1095638 2e-09 38_[-1]_37 chrXII:374207-374670 2.4e-09 3_[+1]_72 chrV:492238-492548 2.4e-09 19_[-1]_56 chrIV:619725-620212 2.4e-09 61_[-1]_14 chrXV:976285-976674 2.9e-09 28_[+1]_47 chrX:422723-423215 2.9e-09 54_[+1]_21 chrXIV:96039-96518 3.1e-09 23_[-1]_52 chrVII:779400-779930 3.1e-09 36_[+1]_39 chrXIII:195958-196289 7.2e-09 5_[-1]_70 chrX:415700-416234 7.8e-09 24_[-1]_51 chrXIV:632413-632827 1.1e-08 66_[+1]_9 chrVII:730970-731439 1.1e-08 20_[+1]_55 chrXIII:320968-321316 1.2e-08 65_[-1]_10 chrXIII:837728-838228 1.2e-08 52_[+1]_23 chrIV:946155-946609 1.2e-08 32_[+1]_43 chrXVI:435619-436175 2.6e-08 56_[-1]_19 chrII:642838-643252 2.6e-08 22_[-1]_53 chrXVI:338471-339209 2.9e-08 68_[-1]_7 chrIII:149724-150179 2.9e-08 54_[+1]_21 chrVIII:466814-467294 3.4e-08 21_[+1]_54 chrXVI:744098-744598 6e-08 21_[+1]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCVKRAGRTCMBSGGTTCGAYYCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AYCVKRAGRTCMBSGGTTCGAYYCC width=25 seqs=62 chrXVI:880129-880556 ( 15) ACGCGGGGATCAGCGGTTCGATCCC 1 chrXIV:569660-570167 ( 15) ACGCGGGGATCAGCGGTTCGATCCC 1 chrXII:1051933-1052204 ( 64) ACGCGGGGATCAGCGGTTCGATCCC 1 chrVII:738931-739466 ( 12) ACGCGGGGATCAGCGGTTCGATCCC 1 chrV:443075-443375 ( 38) ACGCGGGGATCAGCGGTTCGATCCC 1 chrII:197258-197822 ( 42) ACGCGGGGATCAGCGGTTCGATCCC 1 chrIII:123367-123790 ( 60) TGCGGGAGGTCCCGGGTTCGAGTCC 1 chrXVI:581835-582460 ( 2) ATCATAAGGTTAGGGGTTCGAGCCC 1 chrX:414795-415267 ( 22) ATCATAAGGTTAGGGGTTCGAGCCC 1 chrIX:299963-300502 ( 57) ATCATAAGGTTAGGGGTTCGAGCCC 1 chrIV:1201562-1201982 ( 65) ATCATAAGGTTAGGGGTTCGAGCCC 1 chrXIII:747760-748129 ( 9) ATCAGAAGATTATGGGTTCGACCCC 1 chrXI:162285-162714 ( 49) ATCAGAAGATTATGGGTTCGACCCC 1 chrX:374227-374878 ( 15) ATCAGAAGATTATGGGTTCGACCCC 1 chrIV:568537-569359 ( 20) ATCAGAAGATTATGGGTTCGACCCC 1 chrII:405685-406209 ( 17) ATCAGAAGATTATGGGTTCGACCCC 1 chrXVI:860145-860715 ( 34) ATCGTTGGGCCCCCGGTTCGATTCC 1 chrXV:226444-226892 ( 4) ATCGTTGGGCCCCCGGTTCGATTCC 1 chrXII:448537-448841 ( 22) ATCCGGACAACCCCGGTTCGAATCC 1 chrVII:845319-846021 ( 64) ATCGTTGGGCCCCCGGTTCGATTCC 1 chrIV:992691-993026 ( 59) ATCGTTGGGCCCCCGGTTCGATTCC 1 chrIV:645052-645364 ( 6) ATCCGGACAACCCCGGTTCGAATCC 1 chrIII:168138-168529 ( 29) ATCCGGACAACCCCGGTTCGAATCC 1 chrXVI:769035-769465 ( 18) ACCGAAATGTCAGGGGTTCGAGCCC 1 chrXI:578698-579306 ( 73) ACCGAAATGTCAGGGGTTCGAGCCC 1 chrVII:115343-115713 ( 70) ACCGAAATGTCAGGGGTTCGAGCCC 1 chrVII:541723-542130 ( 10) ACCGTGGAGACCGGGGTTCGACTCC 1 chrV:487066-487598 ( 60) ACCGTGGAGACCGGGGTTCGACTCC 1 chrV:354691-355308 ( 21) ACCGTGGAGACCGGGGTTCGACTCC 1 chrV:176898-177443 ( 15) ACCGTGGAGACCGGGGTTCGACTCC 1 chrV:130847-131340 ( 50) ATCCGAACAACCCCGGTTCGAATCC 1 chrIV:1016979-1017493 ( 32) ACCGTGGAGACCGGGGTTCGACTCC 1 chrXIII:586403-586915 ( 38) CGCAGAACGTCCCCAGTTCGATCCT 1 chrXIII:420331-420858 ( 55) CGCAGAACGTCCCCAGTTCGATCCT 1 chrXI:307939-308454 ( 9) CGCAGAACGTCCCCAGTTCGATCCT 1 chrX:378206-378546 ( 72) CGCAGAACGTCCCCAGTTCGATCCT 1 chrVII:823350-823686 ( 52) CGCAGAACGTCCCCAGTTCGATCCT 1 chrVIII:475566-475898 ( 35) CGGCAAAGGTCCCGAGTTCGATCCT 1 chrII:326544-327099 ( 32) CGGCGAAGATCCCGAGTTCGAACCT 1 chrII:266206-266672 ( 26) ATGTGGAGATCATCGGTTCAAATCC 1 chrVIII:358280-358784 ( 7) ATCTGGAGGTCCTGTGTTCGATCCA 1 chrIV:1095146-1095638 ( 39) ATCTGGAGGTCCTGTGTTCGATCCA 1 chrXII:374207-374670 ( 4) ACCAGAAGATTCCAGGTTCAAGTCC 1 chrV:492238-492548 ( 20) ACCAGAAGATTCCAGGTTCAAGTCC 1 chrIV:619725-620212 ( 62) ACCAGAAGATTCCAGGTTCAAGTCC 1 chrXV:976285-976674 ( 29) ATCTGAAGGTCGAGAGTTCGAACCT 1 chrX:422723-423215 ( 55) ATCTGAAGGTCGAGAGTTCGAACCT 1 chrXIV:96039-96518 ( 24) AAGGTGGGGACACGGGTTCGATTCT 1 chrVII:779400-779930 ( 37) AAGGTGGGGACACGGGTTCGATTCT 1 chrXIII:195958-196289 ( 6) TGCGAGAGGCCCTGGGTTCAATTCC 1 chrX:415700-416234 ( 25) ATCGAAGGGTTGCAGGTTCAATTCC 1 chrXIV:632413-632827 ( 67) ATCGCAAGATCGTGAGTTCAACCCT 1 chrVII:730970-731439 ( 21) ATCGCAAGATCGTGAGTTCAACCCT 1 chrXIII:320968-321316 ( 66) TGGGAGAGGTCTCCGGTTCGATTCC 1 chrXIII:837728-838228 ( 53) ATCTTGAGATCGGGCGTTCGACTCG 1 chrIV:946155-946609 ( 33) ATCTTGAGATCGGGCGTTCGACTCG 1 chrXVI:435619-436175 ( 57) ATCTGTTGGTCCTTAGTTCGATCCT 1 chrII:642838-643252 ( 23) ATCTGTTGGTCCTTAGTTCGATCCT 1 chrXVI:338471-339209 ( 69) ACCCTGATGTCCTCGGATCGAAACC 1 chrIII:149724-150179 ( 55) ACCCTGATGTCCTCGGATCGAAACC 1 chrVIII:466814-467294 ( 22) ATGCAAAGGTCGCTAGTTCAATTCT 1 chrXVI:744098-744598 ( 22) ATGCAAAGGTCGTTAGTTCAATTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCVKRAGRTCMBSGGTTCGAYYCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 34428 bayes= 11.1072 E= 1.9e-240 144 -76 -1260 -267 -326 68 -25 70 -1260 201 24 -1260 -17 43 75 -109 -109 -257 143 -1 65 -1260 113 -167 114 -1260 60 -326 -193 -40 186 -193 33 -1260 168 -1260 -80 -125 -1260 127 -1260 204 -1260 -56 14 138 -40 -425 -326 101 75 -26 -226 95 138 -226 -35 -257 186 -326 -1260 -1260 238 -1260 -326 -1260 -1260 165 -1260 -1260 -1260 170 -1260 238 -1260 -1260 -93 -1260 213 -1260 170 -1260 -1260 -1260 -93 24 -11 50 -326 147 -1260 50 -1260 238 -1260 -1260 -326 179 -257 -17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCVKRAGRTCMBSGGTTCGAYYCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 62 E= 1.9e-240 0.838710 0.112903 0.000000 0.048387 0.032258 0.306452 0.161290 0.500000 0.000000 0.774194 0.225806 0.000000 0.274194 0.258065 0.322581 0.145161 0.145161 0.032258 0.516129 0.306452 0.483871 0.000000 0.419355 0.096774 0.677419 0.000000 0.290323 0.032258 0.080645 0.145161 0.693548 0.080645 0.387097 0.000000 0.612903 0.000000 0.177419 0.080645 0.000000 0.741935 0.000000 0.790323 0.000000 0.209677 0.338710 0.500000 0.145161 0.016129 0.032258 0.387097 0.322581 0.258065 0.064516 0.370968 0.500000 0.064516 0.241935 0.032258 0.693548 0.032258 0.000000 0.000000 1.000000 0.000000 0.032258 0.000000 0.000000 0.967742 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.161290 0.000000 0.838710 0.000000 1.000000 0.000000 0.000000 0.000000 0.161290 0.225806 0.177419 0.435484 0.032258 0.532258 0.000000 0.435484 0.000000 1.000000 0.000000 0.000000 0.032258 0.661290 0.032258 0.274194 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCVKRAGRTCMBSGGTTCGAYYCC MEME-1 regular expression -------------------------------------------------------------------------------- A[TC][CG][GAC][GT][AG][AG]G[GA]T[CT][CA][CGT][GC][GA]GTTCGA[TC][CT]C[CT] -------------------------------------------------------------------------------- Time 193.28 secs. ******************************************************************************** ******************************************************************************** MOTIF GSBBNBDTRGYBYAGTGGKWA MEME-2 width = 21 sites = 103 llr = 1368 E-value = 5.3e-201 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBBNBDTRGYBYAGTGGKWA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :111213:4::::a3::::36 pos.-specific C :44433::::643::11:12: probability G 8423224:6a:31:7:7a3:1 matrix T 2133333a::435::92:553 bits 2.4 * * 2.1 * * 1.9 * * 1.7 * * * * Relative 1.4 * * * ** * Entropy 1.2 * **** *** * (19.2 bits) 1.0 * **** ***** 0.7 ** **** ***** 0.5 ** ************* * 0.2 **** **************** 0.0 --------------------- Multilevel GGCCTTGTGGCCTAGTGGTTA consensus TCTGCCT A TTC A GAT sequence GTAGA G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYBYAGTGGKWA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXVI:856731-857100 + 37 2.48e-09 AACAAGATTC GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrXII:656853-657210 - 5 2.48e-09 CAAGAAAATT GGGCGTGTGGCGTAGTCGGTA GCGC chrVII:774123-774584 + 46 2.48e-09 TCAATTAATT GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrIV:409980-410782 + 48 2.48e-09 TACAAATATT GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrXV:300903-301291 + 50 4.47e-09 AGAAAAGATC GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXIII:195958-196289 - 77 4.47e-09 CAA GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXII:92299-92878 + 10 4.47e-09 AGTTAATAA GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrI:138974-139336 + 47 4.47e-09 CAATTAGTAC GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXIV:96039-96518 - 64 9.22e-09 TCCAACACAT GGGCGGTTAGTGTAGTGGTTA TCATCCCACC chrVII:779400-779930 + 1 9.22e-09 . GGGCGGTTAGTGTAGTGGTTA TCATCCCACC chrXIII:808121-808549 - 12 1.29e-08 AGAAGAAAAA GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrXII:448537-448841 - 62 1.29e-08 AAGAAGTTCC GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrIV:802586-803001 - 39 1.29e-08 ATGAATTGTC GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrIV:645052-645364 - 46 1.29e-08 CAGTTGTTAC GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrIII:168138-168529 - 69 1.29e-08 AAGAAGTCCT GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrIV:1150730-1151167 - 23 1.52e-08 AAGTGTTTCA GTCCCAGTGGCCGAGTGGTTA AGGCGATGCC chrIII:227751-228214 + 10 1.52e-08 AATCGAAAT GGCACTATGGCCGAGTGGTTA AGGCGAGAGA chrXIII:259056-259439 - 22 1.78e-08 AAGTTAGTAT GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrXII:167769-168235 - 53 1.78e-08 ATAGTCATAT GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrX:523837-524365 - 22 1.78e-08 AGAGATTAAA GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrV:86410-86892 + 3 1.78e-08 CT GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrXVI:880129-880556 - 57 2.44e-08 ACAATATAAT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrXVI:571998-572524 + 58 2.44e-08 ACAATACTTC GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXV:226444-226892 - 43 2.44e-08 AAGAAATTCA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXIV:602092-602526 + 53 2.44e-08 AGATAACAAT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrXIV:569660-570167 - 57 2.44e-08 AGATAACAGT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrXIII:747760-748129 - 49 2.44e-08 CATATGACTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrXIII:131658-132111 - 42 2.44e-08 AAGAAATTTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrX:396602-397028 - 11 2.44e-08 TCAAAAGTAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrX:374227-374878 - 55 2.44e-08 ACAAATAGTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrVII:845319-846021 + 29 2.44e-08 TAAATAACAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrVI:162032-162374 + 75 2.44e-08 AAGAAAACAA GCGCAAGTGGTTTAGTGGTAA AATCC chrV:443075-443375 - 80 2.44e-08 . GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrIX:183323-183688 - 38 2.44e-08 ACAAATTCCT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrIV:992691-993026 + 24 2.44e-08 ACAATTGTGA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrIII:142627-142966 - 5 2.44e-08 AAGATTACTA GCGCAAGTGGTTTAGTGGTAA AATC chrII:197258-197822 + 4 2.44e-08 CAA GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrII:642838-643252 - 63 3.84e-08 GTAATAGAAA GCTCGTATGGCGCAGTGGTAG CGCAGCAGAT chrXIII:586403-586915 - 80 8.75e-08 . GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXI:307939-308454 - 51 8.75e-08 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrX:378206-378546 + 34 8.75e-08 TAAATTAATA GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrVII:823350-823686 + 14 8.75e-08 CAATAAGAGT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrV:438466-438937 + 49 8.75e-08 CAACAAATTA GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrII:350609-351040 + 53 8.75e-08 TCAATAAAAG GGTTTTATAGTGTAGTGGTTA TCACTTTCGG chrX:617703-618114 + 61 9.99e-08 AACAAACAAT GGGAGTTTGGCCGAGTGGTTT AAGGCGTCAG chrVII:1004021-1004409 + 51 1.13e-07 TCAAGGGTTT GCCTCCTTAGCTTAGTGGTAG AGCGTTGCAC chrVII:661545-661937 + 58 1.13e-07 GTAAAAATTT GCCTCCTTAGCTTAGTGGTAG AGCGTTGCAC chrIV:1256861-1257281 - 38 1.45e-07 GATCTTCTTA GCGAAAGTGGTTCAGTGGTTA GAATTCATGC chrV:435656-436000 - 26 1.64e-07 AACAATAAGA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrIV:1201562-1201982 + 28 1.64e-07 CAAATAAATA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrIII:151134-151577 - 31 1.64e-07 TAATTAAAGA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrXII:962847-963259 - 32 2.08e-07 TATTATCGAC GGAGGGTTGGCCGAGTGGTCT AAGGCGGCAG chrX:424299-424708 - 42 2.08e-07 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCT AAGGCGGCAG chrIV:519660-519900 + 13 2.08e-07 GTGATTTTAC GGAGGGTTGGCCGAGTGGTCT AAGGCGGCAG chrXV:340159-340598 - 23 2.61e-07 TCAAGATCTG TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrXI:490746-491208 + 41 2.61e-07 ATAATTCTTG TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrX:233704-234158 + 58 2.61e-07 TATATTCTTG TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrV:492238-492548 - 61 2.61e-07 GAACATCCTA TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrXIV:442782-443236 + 47 3.26e-07 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCT AAGGCGCCTG chrVII:857100-857886 - 28 3.26e-07 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCT AAGGCGCCTG chrVII:422890-423368 + 13 3.26e-07 ACAGATAAGT GGTTGTTTGGCCGAGCGGTCT AAGGCGCCTG chrVII:205329-205746 + 34 3.26e-07 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCT AAGGCGCCTG chrXV:353934-354313 - 20 4.04e-07 ACGGTTTACT GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrVIII:115981-116388 - 25 4.04e-07 CACTATTAGA GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrII:326544-327099 - 74 6.09e-07 GTTCCG GGTCCAATGGTCCAGTGGTTC AAGACGTCGC chrXI:578698-579306 + 13 8.96e-07 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTA GAGCGTTCGG chrVII:115343-115713 + 10 8.96e-07 AAGAACTCA TCCTTGTTAGCTCAGTTGGTA GAGCGTTCGG chrIV:359355-359753 + 73 8.96e-07 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTA GAGCGTT chrXIV:631704-632125 - 33 9.83e-07 AACTTCTACC GGGCGTGTGGTCTAGAGGTAT GATTCTCGCT chrXIV:374641-375094 + 52 1.08e-06 AGAAAAATAA GCGGACTTAGCTCAGTTGGGA GAGCGCCAGA chrVIII:358280-358784 - 67 1.41e-06 CAAATAGTAA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrVIII:237777-238134 - 14 1.41e-06 CAAATAGTAA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrII:36244-36575 + 39 1.41e-06 TCAGTTGTAA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrXII:426845-427437 + 41 1.67e-06 GTGTTTCTTA TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrXI:513237-513584 - 23 1.67e-06 CAAATAACGT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrX:540963-542015 + 69 1.67e-06 AGAAAGAAAA TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrX:422723-423215 + 18 1.67e-06 TCCTTTGTAT GCTTCAGTAGCTCAGTAGGAA GAGCGTCAGT chrX:390881-391349 - 30 1.67e-06 AAGAAATAGT GCTTCAGTAGCTCAGTAGGAA GAGCGTCAGT chrX:355185-355735 + 46 1.67e-06 CTTTGTTTCT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrVII:544419-544851 - 43 1.67e-06 AGATATTTCT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrIV:1175588-1176057 + 57 1.67e-06 ACAAAACAAA GCTTCAGTAGCTCAGTAGGAA GAGCGTCAGT chrIV:568537-569359 + 66 1.67e-06 CTTTGTTTCT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrII:405685-406209 + 63 1.67e-06 CTTTGTTTCT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrXV:228076-228540 + 73 2.71e-06 TAAAATATTA GACTCCATGGCCAAGTTGGTT AAGGCGT chrXIV:632413-632827 + 29 2.71e-06 AATTTAAAGT GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrIII:127592-127866 + 37 2.71e-06 AAGATAAAAT GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrXIII:362946-363263 + 10 2.93e-06 TCCAAGTTT GCCATCTTAGTATAGTGGTTA GTACACATCG chrIX:197363-197780 + 71 3.40e-06 GCTAATCAAA TCCGATGTAGTGTAACGGCTA TCACATCAC chrIV:1016979-1017493 - 72 3.40e-06 AGGTACAA TCCGATGTAGTGTAACGGCTA TCACATCACG chrXIII:378855-379987 - 17 3.93e-06 AATAAAAGTT GAAGCGGTGGCTCAATGGTAG AGCTTTCGAC chrXI:302710-303184 + 21 3.93e-06 ATTCCAAGAT GAAGCGGTGGCTCAATGGTAG AGCTTTCGAC chrVII:878595-879079 - 8 3.93e-06 ATTTCAAGAT GAAGCGGTGGCTCAATGGTAG AGCTTTC chrVII:287173-287724 - 37 3.93e-06 ATTTCAAGAT GAAGCGGTGGCTCAATGGTAG AGCTTTCGAC chrVIII:475566-475898 - 76 4.23e-06 GTCT GTTCCAATAGTGTAGCGGCTA TCACGTTGCC chrIV:1075329-1075751 - 34 4.23e-06 CCGTAATATT GTTCCAATAGTGTAGCGGCTA TCACGTTGCC chrXVI:210059-210457 - 35 6.36e-06 CCAATTATTG TCCGATATAGTGTAACGGCTA TCACATCACG chrXI:140745-141439 - 27 6.36e-06 TCCTTTGTAA TCCGATATAGTGTAACGGCTA TCACATCACG chrIX:370217-370610 + 54 6.36e-06 TAGATTATAA TCCGATATAGTGTAACGGCTA TCACATCACG chrIII:82402-82679 - 23 6.36e-06 TAATTTGTTA TCCGATATAGTGTAACGGCTA TCACATCACG chrVI:162592-162834 - 54 6.79e-06 TTGGCTTCGT TCTCCTTTAGTTGAGTAGTCA ATTGCTTCAA chrV:99888-100322 + 78 7.71e-06 AAGTTGGCTA AGCGCCGTGGCGCAGTGGAAG CG chrIII:149724-150179 + 19 7.71e-06 TGTAATGTTG AGCGCCGTGGCGCAGTGGAAG CGCGCAGGGC chrXI:74386-74796 - 74 9.28e-06 CAACTT GGCCATGGAGTCTAATTGCTA TATTTTTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYBYAGTGGKWA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:856731-857100 2.5e-09 36_[+2]_43 chrXII:656853-657210 2.5e-09 4_[-2]_75 chrVII:774123-774584 2.5e-09 45_[+2]_34 chrIV:409980-410782 2.5e-09 47_[+2]_32 chrXV:300903-301291 4.5e-09 49_[+2]_30 chrXIII:195958-196289 4.5e-09 76_[-2]_3 chrXII:92299-92878 4.5e-09 9_[+2]_70 chrI:138974-139336 4.5e-09 46_[+2]_33 chrXIV:96039-96518 9.2e-09 63_[-2]_16 chrVII:779400-779930 9.2e-09 [+2]_79 chrXIII:808121-808549 1.3e-08 11_[-2]_68 chrXII:448537-448841 1.3e-08 61_[-2]_18 chrIV:802586-803001 1.3e-08 38_[-2]_41 chrIV:645052-645364 1.3e-08 45_[-2]_34 chrIII:168138-168529 1.3e-08 68_[-2]_11 chrIV:1150730-1151167 1.5e-08 22_[-2]_57 chrIII:227751-228214 1.5e-08 9_[+2]_70 chrXIII:259056-259439 1.8e-08 21_[-2]_58 chrXII:167769-168235 1.8e-08 52_[-2]_27 chrX:523837-524365 1.8e-08 21_[-2]_58 chrV:86410-86892 1.8e-08 2_[+2]_77 chrXVI:880129-880556 2.4e-08 56_[-2]_23 chrXVI:571998-572524 2.4e-08 57_[+2]_22 chrXV:226444-226892 2.4e-08 42_[-2]_37 chrXIV:602092-602526 2.4e-08 52_[+2]_27 chrXIV:569660-570167 2.4e-08 56_[-2]_23 chrXIII:747760-748129 2.4e-08 48_[-2]_31 chrXIII:131658-132111 2.4e-08 41_[-2]_38 chrX:396602-397028 2.4e-08 10_[-2]_69 chrX:374227-374878 2.4e-08 54_[-2]_25 chrVII:845319-846021 2.4e-08 28_[+2]_51 chrVI:162032-162374 2.4e-08 74_[+2]_5 chrV:443075-443375 2.4e-08 79_[-2] chrIX:183323-183688 2.4e-08 37_[-2]_42 chrIV:992691-993026 2.4e-08 23_[+2]_56 chrIII:142627-142966 2.4e-08 4_[-2]_75 chrII:197258-197822 2.4e-08 3_[+2]_76 chrII:642838-643252 3.8e-08 62_[-2]_17 chrXIII:586403-586915 8.8e-08 79_[-2] chrXI:307939-308454 8.8e-08 50_[-2]_29 chrX:378206-378546 8.8e-08 33_[+2]_46 chrVII:823350-823686 8.8e-08 13_[+2]_66 chrV:438466-438937 8.8e-08 48_[+2]_31 chrII:350609-351040 8.8e-08 52_[+2]_27 chrX:617703-618114 1e-07 60_[+2]_19 chrVII:1004021-1004409 1.1e-07 50_[+2]_29 chrVII:661545-661937 1.1e-07 57_[+2]_22 chrIV:1256861-1257281 1.5e-07 37_[-2]_42 chrV:435656-436000 1.6e-07 25_[-2]_54 chrIV:1201562-1201982 1.6e-07 27_[+2]_52 chrIII:151134-151577 1.6e-07 30_[-2]_49 chrXII:962847-963259 2.1e-07 31_[-2]_48 chrX:424299-424708 2.1e-07 41_[-2]_38 chrIV:519660-519900 2.1e-07 12_[+2]_67 chrXV:340159-340598 2.6e-07 22_[-2]_57 chrXI:490746-491208 2.6e-07 40_[+2]_39 chrX:233704-234158 2.6e-07 57_[+2]_22 chrV:492238-492548 2.6e-07 60_[-2]_19 chrXIV:442782-443236 3.3e-07 46_[+2]_33 chrVII:857100-857886 3.3e-07 27_[-2]_52 chrVII:422890-423368 3.3e-07 12_[+2]_67 chrVII:205329-205746 3.3e-07 33_[+2]_46 chrXV:353934-354313 4e-07 19_[-2]_60 chrVIII:115981-116388 4e-07 24_[-2]_55 chrII:326544-327099 6.1e-07 73_[-2]_6 chrXI:578698-579306 9e-07 12_[+2]_67 chrVII:115343-115713 9e-07 9_[+2]_70 chrIV:359355-359753 9e-07 72_[+2]_7 chrXIV:631704-632125 9.8e-07 32_[-2]_47 chrXIV:374641-375094 1.1e-06 51_[+2]_28 chrVIII:358280-358784 1.4e-06 66_[-2]_13 chrVIII:237777-238134 1.4e-06 13_[-2]_66 chrII:36244-36575 1.4e-06 38_[+2]_41 chrXII:426845-427437 1.7e-06 40_[+2]_39 chrXI:513237-513584 1.7e-06 22_[-2]_57 chrX:540963-542015 1.7e-06 68_[+2]_11 chrX:422723-423215 1.7e-06 17_[+2]_62 chrX:390881-391349 1.7e-06 29_[-2]_50 chrX:355185-355735 1.7e-06 45_[+2]_34 chrVII:544419-544851 1.7e-06 42_[-2]_37 chrIV:1175588-1176057 1.7e-06 56_[+2]_23 chrIV:568537-569359 1.7e-06 65_[+2]_14 chrII:405685-406209 1.7e-06 62_[+2]_17 chrXV:228076-228540 2.7e-06 72_[+2]_7 chrXIV:632413-632827 2.7e-06 28_[+2]_51 chrIII:127592-127866 2.7e-06 36_[+2]_43 chrXIII:362946-363263 2.9e-06 9_[+2]_70 chrIX:197363-197780 3.4e-06 70_[+2]_9 chrIV:1016979-1017493 3.4e-06 71_[-2]_8 chrXIII:378855-379987 3.9e-06 16_[-2]_63 chrXI:302710-303184 3.9e-06 20_[+2]_59 chrVII:878595-879079 3.9e-06 7_[-2]_72 chrVII:287173-287724 3.9e-06 36_[-2]_43 chrVIII:475566-475898 4.2e-06 75_[-2]_4 chrIV:1075329-1075751 4.2e-06 33_[-2]_46 chrXVI:210059-210457 6.4e-06 34_[-2]_45 chrXI:140745-141439 6.4e-06 26_[-2]_53 chrIX:370217-370610 6.4e-06 53_[+2]_26 chrIII:82402-82679 6.4e-06 22_[-2]_57 chrVI:162592-162834 6.8e-06 53_[-2]_26 chrV:99888-100322 7.7e-06 77_[+2]_2 chrIII:149724-150179 7.7e-06 18_[+2]_61 chrXI:74386-74796 9.3e-06 73_[-2]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYBYAGTGGKWA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBBNBDTRGYBYAGTGGKWA width=21 seqs=103 chrXVI:856731-857100 ( 37) GGGCGTGTGGCGTAGTCGGTA 1 chrXII:656853-657210 ( 5) GGGCGTGTGGCGTAGTCGGTA 1 chrVII:774123-774584 ( 46) GGGCGTGTGGCGTAGTCGGTA 1 chrIV:409980-410782 ( 48) GGGCGTGTGGCGTAGTCGGTA 1 chrXV:300903-301291 ( 50) GGGCGTGTGGTCTAGTGGTAT 1 chrXIII:195958-196289 ( 77) GGGCGTGTGGTCTAGTGGTAT 1 chrXII:92299-92878 ( 10) GGGCGTGTGGTCTAGTGGTAT 1 chrI:138974-139336 ( 47) GGGCGTGTGGTCTAGTGGTAT 1 chrXIV:96039-96518 ( 64) GGGCGGTTAGTGTAGTGGTTA 1 chrVII:779400-779930 ( 1) GGGCGGTTAGTGTAGTGGTTA 1 chrXIII:808121-808549 ( 12) GGTCCTATAGTGTAGTGGTTA 1 chrXII:448537-448841 ( 62) GGTCCTATAGTGTAGTGGTTA 1 chrIV:802586-803001 ( 39) GGTCCTATAGTGTAGTGGTTA 1 chrIV:645052-645364 ( 46) GGTCCTATAGTGTAGTGGTTA 1 chrIII:168138-168529 ( 69) GGTCCTATAGTGTAGTGGTTA 1 chrIV:1150730-1151167 ( 23) GTCCCAGTGGCCGAGTGGTTA 1 chrIII:227751-228214 ( 10) GGCACTATGGCCGAGTGGTTA 1 chrXIII:259056-259439 ( 22) GGCAACTTGGCCGAGTGGTTA 1 chrXII:167769-168235 ( 53) GGCAACTTGGCCGAGTGGTTA 1 chrX:523837-524365 ( 22) GGCAACTTGGCCGAGTGGTTA 1 chrV:86410-86892 ( 3) GGCAACTTGGCCGAGTGGTTA 1 chrXVI:880129-880556 ( 57) GGTCTCTTGGCCCAGTTGGTT 1 chrXVI:571998-572524 ( 58) GCGCAAGTGGTTTAGTGGTAA 1 chrXV:226444-226892 ( 43) GCGCAAGTGGTTTAGTGGTAA 1 chrXIV:602092-602526 ( 53) GGTCTCTTGGCCCAGTTGGTT 1 chrXIV:569660-570167 ( 57) GGTCTCTTGGCCCAGTTGGTT 1 chrXIII:747760-748129 ( 49) GCTCGCGTGGCGTAATGGCAA 1 chrXIII:131658-132111 ( 42) GCTCGCGTGGCGTAATGGCAA 1 chrX:396602-397028 ( 11) GCGCAAGTGGTTTAGTGGTAA 1 chrX:374227-374878 ( 55) GCTCGCGTGGCGTAATGGCAA 1 chrVII:845319-846021 ( 29) GCGCAAGTGGTTTAGTGGTAA 1 chrVI:162032-162374 ( 75) GCGCAAGTGGTTTAGTGGTAA 1 chrV:443075-443375 ( 80) GGTCTCTTGGCCCAGTTGGTT 1 chrIX:183323-183688 ( 38) GGTCTCTTGGCCCAGTTGGTT 1 chrIV:992691-993026 ( 24) GCGCAAGTGGTTTAGTGGTAA 1 chrIII:142627-142966 ( 5) GCGCAAGTGGTTTAGTGGTAA 1 chrII:197258-197822 ( 4) GGTCTCTTGGCCCAGTTGGTT 1 chrII:642838-643252 ( 63) GCTCGTATGGCGCAGTGGTAG 1 chrXIII:586403-586915 ( 80) GGTTTCGTGGTCTAGTCGGTT 1 chrXI:307939-308454 ( 51) GGTTTCGTGGTCTAGTCGGTT 1 chrX:378206-378546 ( 34) GGTTTCGTGGTCTAGTCGGTT 1 chrVII:823350-823686 ( 14) GGTTTCGTGGTCTAGTCGGTT 1 chrV:438466-438937 ( 49) GGTTTCGTGGTCTAGTCGGTT 1 chrII:350609-351040 ( 53) GGTTTTATAGTGTAGTGGTTA 1 chrX:617703-618114 ( 61) GGGAGTTTGGCCGAGTGGTTT 1 chrVII:1004021-1004409 ( 51) GCCTCCTTAGCTTAGTGGTAG 1 chrVII:661545-661937 ( 58) GCCTCCTTAGCTTAGTGGTAG 1 chrIV:1256861-1257281 ( 38) GCGAAAGTGGTTCAGTGGTTA 1 chrV:435656-436000 ( 26) GCCTTGTTGGCGCAATCGGTA 1 chrIV:1201562-1201982 ( 28) GCCTTGTTGGCGCAATCGGTA 1 chrIII:151134-151577 ( 31) GCCTTGTTGGCGCAATCGGTA 1 chrXII:962847-963259 ( 32) GGAGGGTTGGCCGAGTGGTCT 1 chrX:424299-424708 ( 42) GGAGGGTTGGCCGAGTGGTCT 1 chrIV:519660-519900 ( 13) GGAGGGTTGGCCGAGTGGTCT 1 chrXV:340159-340598 ( 23) TTCCTCGTGGCCCAATGGTCA 1 chrXI:490746-491208 ( 41) TTCCTCGTGGCCCAATGGTCA 1 chrX:233704-234158 ( 58) TTCCTCGTGGCCCAATGGTCA 1 chrV:492238-492548 ( 61) TTCCTCGTGGCCCAATGGTCA 1 chrXIV:442782-443236 ( 47) GGTTGTTTGGCCGAGCGGTCT 1 chrVII:857100-857886 ( 28) GGTTGTTTGGCCGAGCGGTCT 1 chrVII:422890-423368 ( 13) GGTTGTTTGGCCGAGCGGTCT 1 chrVII:205329-205746 ( 34) GGTTGTTTGGCCGAGCGGTCT 1 chrXV:353934-354313 ( 20) GCTTCTATGGCCAAGTTGGTA 1 chrVIII:115981-116388 ( 25) GCTTCTATGGCCAAGTTGGTA 1 chrII:326544-327099 ( 74) GGTCCAATGGTCCAGTGGTTC 1 chrXI:578698-579306 ( 13) TCCTTGTTAGCTCAGTTGGTA 1 chrVII:115343-115713 ( 10) TCCTTGTTAGCTCAGTTGGTA 1 chrIV:359355-359753 ( 73) TCCTTGTTAGCTCAGTTGGTA 1 chrXIV:631704-632125 ( 33) GGGCGTGTGGTCTAGAGGTAT 1 chrXIV:374641-375094 ( 52) GCGGACTTAGCTCAGTTGGGA 1 chrVIII:358280-358784 ( 67) GCGGATTTAGCTCAGTTGGGA 1 chrVIII:237777-238134 ( 14) GCGGATTTAGCTCAGTTGGGA 1 chrII:36244-36575 ( 39) GCGGATTTAGCTCAGTTGGGA 1 chrXII:426845-427437 ( 41) TCCGTGATAGTTTAATGGTCA 1 chrXI:513237-513584 ( 23) TCCGTGATAGTTTAATGGTCA 1 chrX:540963-542015 ( 69) TCCGTGATAGTTTAATGGTCA 1 chrX:422723-423215 ( 18) GCTTCAGTAGCTCAGTAGGAA 1 chrX:390881-391349 ( 30) GCTTCAGTAGCTCAGTAGGAA 1 chrX:355185-355735 ( 46) TCCGTGATAGTTTAATGGTCA 1 chrVII:544419-544851 ( 43) TCCGTGATAGTTTAATGGTCA 1 chrIV:1175588-1176057 ( 57) GCTTCAGTAGCTCAGTAGGAA 1 chrIV:568537-569359 ( 66) TCCGTGATAGTTTAATGGTCA 1 chrII:405685-406209 ( 63) TCCGTGATAGTTTAATGGTCA 1 chrXV:228076-228540 ( 73) GACTCCATGGCCAAGTTGGTT 1 chrXIV:632413-632827 ( 29) GACTCCATGGCCAAGTTGGTT 1 chrIII:127592-127866 ( 37) GACTCCATGGCCAAGTTGGTT 1 chrXIII:362946-363263 ( 10) GCCATCTTAGTATAGTGGTTA 1 chrIX:197363-197780 ( 71) TCCGATGTAGTGTAACGGCTA 1 chrIV:1016979-1017493 ( 72) TCCGATGTAGTGTAACGGCTA 1 chrXIII:378855-379987 ( 17) GAAGCGGTGGCTCAATGGTAG 1 chrXI:302710-303184 ( 21) GAAGCGGTGGCTCAATGGTAG 1 chrVII:878595-879079 ( 8) GAAGCGGTGGCTCAATGGTAG 1 chrVII:287173-287724 ( 37) GAAGCGGTGGCTCAATGGTAG 1 chrVIII:475566-475898 ( 76) GTTCCAATAGTGTAGCGGCTA 1 chrIV:1075329-1075751 ( 34) GTTCCAATAGTGTAGCGGCTA 1 chrXVI:210059-210457 ( 35) TCCGATATAGTGTAACGGCTA 1 chrXI:140745-141439 ( 27) TCCGATATAGTGTAACGGCTA 1 chrIX:370217-370610 ( 54) TCCGATATAGTGTAACGGCTA 1 chrIII:82402-82679 ( 23) TCCGATATAGTGTAACGGCTA 1 chrVI:162592-162834 ( 54) TCTCCTTTAGTTGAGTAGTCA 1 chrV:99888-100322 ( 78) AGCGCCGTGGCGCAGTGGAAG 1 chrIII:149724-150179 ( 19) AGCGCCGTGGCGCAGTGGAAG 1 chrXI:74386-74796 ( 74) GGCCATGGAGTCTAATTGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYBYAGTGGKWA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 36240 bayes= 8.97652 E= 5.3e-201 -399 -1333 202 -60 -218 116 119 -218 -218 95 28 10 -199 112 40 -29 -47 45 22 -8 -108 65 16 14 -23 -1333 109 10 -1333 -1333 -430 168 26 -1333 172 -1333 -1333 -1333 238 -1333 -1333 156 -1333 50 -499 105 56 1 -267 70 -40 68 170 -1333 -1333 -1333 -18 -1333 193 -1333 -499 -72 -1333 150 -299 -72 178 -74 -1333 -1333 238 -1333 -399 -72 74 82 -23 -5 -230 74 105 -430 -113 -23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYBYAGTGGKWA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 103 E= 5.3e-201 0.019417 0.000000 0.776699 0.203883 0.067961 0.427184 0.436893 0.067961 0.067961 0.368932 0.233010 0.330097 0.077670 0.417476 0.252427 0.252427 0.223301 0.262136 0.223301 0.291262 0.145631 0.300971 0.213592 0.339806 0.262136 0.000000 0.407767 0.330097 0.000000 0.000000 0.009709 0.990291 0.368932 0.000000 0.631068 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.563107 0.000000 0.436893 0.009709 0.398058 0.281553 0.310680 0.048544 0.310680 0.145631 0.495146 1.000000 0.000000 0.000000 0.000000 0.271845 0.000000 0.728155 0.000000 0.009709 0.116505 0.000000 0.873786 0.038835 0.116505 0.660194 0.184466 0.000000 0.000000 1.000000 0.000000 0.019417 0.116505 0.320388 0.543689 0.262136 0.184466 0.038835 0.514563 0.640777 0.009709 0.087379 0.262136 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYBYAGTGGKWA MEME-2 regular expression -------------------------------------------------------------------------------- [GT][GC][CTG][CGT][TCAG][TCG][GTA]T[GA]G[CT][CTG][TC]A[GA]TGG[TG][TA][AT] -------------------------------------------------------------------------------- Time 371.49 secs. ******************************************************************************** ******************************************************************************** MOTIF KKGSGCTTKKCSCGYGCHRGWTCGRRKYYY MEME-3 width = 30 sites = 15 llr = 441 E-value = 2.6e-073 ******************************************************************************** -------------------------------------------------------------------------------- Motif KKGSGCTTKKCSCGYGCHRGWTCGRRKYYY MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::1:::::1:::::::35:3::274:::: pos.-specific C :::318:2::979:7:a3::::a:::1755 probability G 35a5911:36:3:a:a:15a:::8363::: matrix T 75:::198731:1:3::2::7a::::5355 bits 2.4 * * ** * * 2.1 * * ** * * 1.9 * * ** ** * * 1.7 * * * ** ** * ** Relative 1.4 * ** **** ** * *** Entropy 1.2 * **** ******* * *** * * (42.4 bits) 1.0 ***************** ** ***** *** 0.7 ***************** ************ 0.5 ***************** ************ 0.2 ***************** ************ 0.0 ------------------------------ Multilevel TTGGGCTTTGCCCGCGCAGGTTCGAGTCCT consensus GG C CGT G T CA A AGAGTTC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KKGSGCTTKKCSCGYGCHRGWTCGRRKYYY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXII:167769-168235 - 2 3.37e-18 TAGAAATCTT TTGGGCTTTGCCCGCGCAGGTTCGAGTCCT G chrV:86410-86892 + 45 3.37e-18 TAGAAATCTT TTGGGCTTTGCCCGCGCAGGTTCGAGTCCT GCAGTTGTCG chrIV:437559-438101 + 34 3.37e-18 TAGAAATCTT TTGGGCTTTGCCCGCGCAGGTTCGAGTCCT GCAGTTGTCG chrII:226988-227345 + 1 3.37e-18 . TTGGGCTTTGCCCGCGCAGGTTCGAGTCCT GCAGTTGTCG chrXVI:689396-689838 + 40 9.45e-15 TTGAAATCTG TTGGGCTCTGCCCGCGCTGGTTCAAATCCT GCTGGTGTCG chrV:288155-288752 - 50 9.45e-15 TTGAAATCTG TTGGGCTCTGCCCGCGCTGGTTCAAATCCT GCTGGTGTCG chrIII:227751-228214 + 71 9.45e-15 CGGCTATCTC TTGGGCTCTGCCCGCGCTGGTTCAAATCCT chrXII:426845-427437 + 66 8.08e-14 TGGTCAGAAT GGGCGCTTGTCGCGTGCCAGATCGGGGTTC AATTC chrX:355185-355735 + 71 8.08e-14 TGGTCAGAAT GGGCGCTTGTCGCGTGCCAGATCGGGGTTC chrX:204558-205047 + 8 8.08e-14 TCAGAAT GGGCGCTTGTCGCGTGCCAGATCGGGGTTC AATTCCCCGT chrVII:544419-544851 - 9 8.08e-14 TGGTCAGAAT GGGCGCTTGTCGCGTGCCAGATCGGGGTTC AATTCCCC chrIX:336069-336628 - 68 8.08e-14 AAT GGGCGCTTGTCGCGTGCCAGATCGGGGTTC AATTCCCCGT chrXV:274472-275017 + 40 8.70e-13 CAATTAGGCA TTGGGTTTTACCTGCGCAGGTTCGAATCCT GTCTGTGACG chrIV:519660-519900 + 57 3.02e-12 TAAGATCTGT TGGACGGTTGTCCGCGCGAGTTCGAACCTC GCATCCTTCA chrII:9360-9907 + 44 3.02e-12 TAAGATCTGT TGGACGGTTGTCCGCGCGAGTTCGAACCTC GCATCCTTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KKGSGCTTKKCSCGYGCHRGWTCGRRKYYY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:167769-168235 3.4e-18 1_[-3]_69 chrV:86410-86892 3.4e-18 44_[+3]_26 chrIV:437559-438101 3.4e-18 33_[+3]_37 chrII:226988-227345 3.4e-18 [+3]_70 chrXVI:689396-689838 9.5e-15 39_[+3]_31 chrV:288155-288752 9.5e-15 49_[-3]_21 chrIII:227751-228214 9.5e-15 70_[+3] chrXII:426845-427437 8.1e-14 65_[+3]_5 chrX:355185-355735 8.1e-14 70_[+3] chrX:204558-205047 8.1e-14 7_[+3]_63 chrVII:544419-544851 8.1e-14 8_[-3]_62 chrIX:336069-336628 8.1e-14 67_[-3]_3 chrXV:274472-275017 8.7e-13 39_[+3]_31 chrIV:519660-519900 3e-12 56_[+3]_14 chrII:9360-9907 3e-12 43_[+3]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KKGSGCTTKKCSCGYGCHRGWTCGRRKYYY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KKGSGCTTKKCSCGYGCHRGWTCGRRKYYY width=30 seqs=15 chrXII:167769-168235 ( 2) TTGGGCTTTGCCCGCGCAGGTTCGAGTCCT 1 chrV:86410-86892 ( 45) TTGGGCTTTGCCCGCGCAGGTTCGAGTCCT 1 chrIV:437559-438101 ( 34) TTGGGCTTTGCCCGCGCAGGTTCGAGTCCT 1 chrII:226988-227345 ( 1) TTGGGCTTTGCCCGCGCAGGTTCGAGTCCT 1 chrXVI:689396-689838 ( 40) TTGGGCTCTGCCCGCGCTGGTTCAAATCCT 1 chrV:288155-288752 ( 50) TTGGGCTCTGCCCGCGCTGGTTCAAATCCT 1 chrIII:227751-228214 ( 71) TTGGGCTCTGCCCGCGCTGGTTCAAATCCT 1 chrXII:426845-427437 ( 66) GGGCGCTTGTCGCGTGCCAGATCGGGGTTC 1 chrX:355185-355735 ( 71) GGGCGCTTGTCGCGTGCCAGATCGGGGTTC 1 chrX:204558-205047 ( 8) GGGCGCTTGTCGCGTGCCAGATCGGGGTTC 1 chrVII:544419-544851 ( 9) GGGCGCTTGTCGCGTGCCAGATCGGGGTTC 1 chrIX:336069-336628 ( 68) GGGCGCTTGTCGCGTGCCAGATCGGGGTTC 1 chrXV:274472-275017 ( 40) TTGGGTTTTACCTGCGCAGGTTCGAATCCT 1 chrIV:519660-519900 ( 57) TGGACGGTTGTCCGCGCGAGTTCGAACCTC 1 chrII:9360-9907 ( 44) TGGACGGTTGTCCGCGCGAGTTCGAACCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KKGSGCTTKKCSCGYGCHRGWTCGRRKYYY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 32163 bayes= 10.1339 E= 2.6e-073 -1055 -1055 80 111 -1055 -1055 128 79 -1055 -1055 238 -1055 -121 80 148 -1055 -1055 -52 218 -1055 -1055 206 -52 -221 -1055 -1055 -52 149 -1055 6 -1055 137 -1055 -1055 80 111 -221 -1055 165 11 -1055 218 -1055 -121 -1055 180 80 -1055 -1055 228 -1055 -221 -1055 -1055 238 -1055 -1055 180 -1055 11 -1055 -1055 238 -1055 -1055 238 -1055 -1055 11 80 -52 -62 60 -1055 148 -1055 -1055 -1055 238 -1055 11 -1055 -1055 111 -1055 -1055 -1055 170 -1055 238 -1055 -1055 -62 -1055 206 -1055 111 -1055 80 -1055 37 -1055 165 -1055 -1055 -52 80 79 -1055 180 -1055 11 -1055 148 -1055 60 -1055 128 -1055 79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KKGSGCTTKKCSCGYGCHRGWTCGRRKYYY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 15 E= 2.6e-073 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.466667 0.533333 0.000000 0.000000 1.000000 0.000000 0.133333 0.333333 0.533333 0.000000 0.000000 0.133333 0.866667 0.000000 0.000000 0.800000 0.133333 0.066667 0.000000 0.000000 0.133333 0.866667 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.333333 0.666667 0.066667 0.000000 0.600000 0.333333 0.000000 0.866667 0.000000 0.133333 0.000000 0.666667 0.333333 0.000000 0.000000 0.933333 0.000000 0.066667 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.333333 0.133333 0.200000 0.466667 0.000000 0.533333 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.666667 0.000000 0.333333 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.133333 0.333333 0.533333 0.000000 0.666667 0.000000 0.333333 0.000000 0.533333 0.000000 0.466667 0.000000 0.466667 0.000000 0.533333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KKGSGCTTKKCSCGYGCHRGWTCGRRKYYY MEME-3 regular expression -------------------------------------------------------------------------------- [TG][TG]G[GC]GCT[TC][TG][GT]C[CG]CG[CT]GC[ACT][GA]G[TA]TC[GA][AG][GA][TG][CT][CT][TC] -------------------------------------------------------------------------------- Time 537.92 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:81737-82349 1.56e-01 100 chrI:138974-139336 1.81e-05 46_[+2(4.47e-09)]_33 chrI:141184-141896 5.13e-01 100 chrI:142272-143351 4.25e-01 100 chrI:166181-166603 7.68e-01 100 chrI:180945-181463 3.61e-02 100 chrI:182137-183148 6.10e-01 100 chrII:9360-9907 9.99e-10 43_[+3(3.02e-12)]_27 chrII:36244-36575 1.23e-03 38_[+2(1.41e-06)]_41 chrII:44937-45350 6.58e-01 100 chrII:59830-62639 7.84e-01 100 chrII:89287-89968 3.58e-01 100 chrII:165068-165454 2.52e-01 100 chrII:167590-168194 9.71e-01 100 chrII:180473-180785 6.02e-01 100 chrII:180992-181652 1.50e-01 100 chrII:197258-197822 5.14e-13 3_[+2(2.44e-08)]_17_[+1(4.86e-12)]_\ 34 chrII:226988-227345 1.22e-13 [+3(3.37e-18)]_70 chrII:266206-266672 2.67e-06 25_[+1(1.82e-09)]_50 chrII:326544-327099 1.13e-10 31_[-1(1.37e-09)]_17_[-2(6.09e-07)]_\ 6 chrII:331792-332741 4.53e-01 100 chrII:347406-348219 9.70e-01 100 chrII:350609-351040 3.63e-04 52_[+2(8.75e-08)]_27 chrII:405685-406209 9.54e-11 16_[+1(4.24e-11)]_21_[+2(1.67e-06)]_\ 17 chrII:415568-416685 7.01e-01 100 chrII:444750-445203 7.52e-01 100 chrII:477027-477724 8.43e-01 100 chrII:592355-593639 3.23e-01 100 chrII:604069-606122 6.30e-01 100 chrII:642838-643252 1.02e-09 22_[-1(2.57e-08)]_15_[-2(3.84e-08)]_\ 17 chrII:644936-645861 9.60e-01 100 chrIII:132-1017 4.95e-02 27_[-2(2.92e-05)]_52 chrIII:82402-82679 1.50e-02 22_[-2(6.36e-06)]_57 chrIII:123367-123790 4.17e-09 59_[-1(1.22e-11)]_16 chrIII:127592-127866 1.15e-08 36_[+2(2.71e-06)]_17_[+1(1.07e-08)]_\ 1 chrIII:142627-142966 2.10e-05 4_[-2(2.44e-08)]_75 chrIII:149724-150179 1.24e-07 18_[+2(7.71e-06)]_15_[+1(2.94e-08)]_\ 21 chrIII:151134-151577 6.04e-04 30_[-2(1.64e-07)]_49 chrIII:163457-163896 1.31e-01 100 chrIII:168138-168529 7.69e-13 28_[-1(8.05e-11)]_15_[-2(1.29e-08)]_\ 11 chrIII:178358-178673 7.87e-01 100 chrIII:227751-228214 1.80e-15 9_[+2(1.52e-08)]_40_[+3(9.45e-15)] chrIII:295329-295992 5.43e-01 100 chrIV:45190-45883 9.67e-01 100 chrIV:83436-84055 8.45e-01 100 chrIV:117170-117892 1.51e-01 100 chrIV:130227-131004 4.29e-01 100 chrIV:217234-217507 4.46e-01 100 chrIV:221683-222637 7.10e-01 100 chrIV:229456-230506 7.37e-01 100 chrIV:308032-309415 9.50e-01 100 chrIV:321677-321925 1.90e-01 100 chrIV:340605-341631 5.73e-01 100 chrIV:358089-358497 4.50e-01 100 chrIV:359355-359753 2.35e-03 72_[+2(8.96e-07)]_7 chrIV:382385-384788 2.17e-01 100 chrIV:409980-410782 3.96e-07 47_[+2(2.48e-09)]_32 chrIV:411254-412979 7.42e-01 100 chrIV:434126-434989 3.13e-01 100 chrIV:437559-438101 6.72e-14 33_[+3(3.37e-18)]_37 chrIV:488412-489098 7.45e-01 100 chrIV:491007-491243 8.40e-01 100 chrIV:519660-519900 1.69e-13 12_[+2(2.08e-07)]_23_[+3(3.02e-12)]_\ 14 chrIV:520734-521107 1.65e-01 100 chrIV:568537-569359 9.54e-11 19_[+1(4.24e-11)]_21_[+2(1.67e-06)]_\ 14 chrIV:578865-580416 6.97e-01 100 chrIV:619725-620212 4.18e-06 61_[-1(2.39e-09)]_14 chrIV:645052-645364 7.69e-13 5_[-1(8.05e-11)]_15_[-2(1.29e-08)]_\ 34 chrIV:667358-668196 5.47e-01 100 chrIV:757820-758006 6.98e-01 100 chrIV:758452-759645 3.62e-01 100 chrIV:802586-803001 4.78e-06 38_[-2(1.29e-08)]_41 chrIV:808507-810346 1.68e-01 100 chrIV:835752-836247 1.29e-01 100 chrIV:884279-884571 7.75e-01 100 chrIV:946155-946609 1.53e-06 32_[+1(1.25e-08)]_43 chrIV:980731-981165 7.33e-01 100 chrIV:992691-993026 6.69e-13 23_[+2(2.44e-08)]_14_[+1(8.05e-11)]_\ 17 chrIV:1016979-1017493 8.91e-10 31_[-1(1.31e-10)]_15_[-2(3.40e-06)]_\ 8 chrIV:1075329-1075751 6.60e-03 33_[-2(4.23e-06)]_46 chrIV:1094779-1094973 9.76e-01 100 chrIV:1095146-1095638 1.30e-05 38_[-1(1.99e-09)]_37 chrIV:1150730-1151167 9.83e-05 22_[-2(1.52e-08)]_57 chrIV:1175588-1176057 1.55e-03 56_[+2(1.67e-06)]_23 chrIV:1201562-1201982 2.76e-11 27_[+2(1.64e-07)]_16_[+1(2.84e-11)]_\ 11 chrIV:1233434-1234482 1.95e-01 100 chrIV:1256861-1257281 4.42e-04 37_[-2(1.45e-07)]_42 chrIV:1300172-1301327 4.18e-01 100 chrIV:1305372-1305809 6.98e-01 100 chrIV:1352352-1353371 8.32e-01 100 chrIV:1355752-1355963 9.37e-01 100 chrIV:1359428-1359985 4.04e-01 100 chrIV:1401258-1403085 5.70e-01 100 chrIV:1450736-1451462 9.92e-01 100 chrIV:1461368-1461825 9.15e-01 100 chrIX:23828-25263 8.33e-02 100 chrIX:67769-68484 2.96e-01 100 chrIX:99639-100044 2.03e-01 100 chrIX:174511-175190 8.38e-01 100 chrIX:183323-183688 3.96e-05 37_[-2(2.44e-08)]_42 chrIX:197363-197780 1.90e-02 70_[+2(3.40e-06)]_9 chrIX:210523-211020 8.16e-01 100 chrIX:248516-248993 8.03e-01 100 chrIX:254236-254554 2.79e-01 100 chrIX:257361-258094 9.30e-01 100 chrIX:299963-300502 1.90e-07 56_[-1(2.84e-11)]_19 chrIX:315251-315867 8.74e-01 100 chrIX:316037-316610 8.72e-01 100 chrIX:322908-324355 2.22e-02 21_[-2(8.82e-05)]_58 chrIX:325759-326128 7.75e-02 100 chrIX:336069-336628 5.55e-11 67_[-3(8.08e-14)]_3 chrIX:370217-370610 2.12e-02 53_[+2(6.36e-06)]_26 chrV:41587-42644 3.68e-01 100 chrV:53525-53897 8.27e-01 100 chrV:61213-62144 7.73e-01 100 chrV:85130-86196 7.37e-01 100 chrV:86410-86892 1.39e-18 2_[+2(1.78e-08)]_21_[+3(3.37e-18)]_\ 26 chrV:99888-100322 3.27e-02 77_[+2(7.71e-06)]_2 chrV:117641-118311 8.69e-01 100 chrV:130847-131340 5.18e-09 9_[+2(6.48e-05)]_19_[-1(1.31e-10)]_\ 26 chrV:135140-136067 7.48e-02 100 chrV:138461-139958 2.93e-02 5_[-1(6.71e-05)]_70 chrV:140217-140903 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chrXVI:731655-732324 4.18e-01 100 chrXVI:744098-744598 3.53e-05 21_[+1(5.97e-08)]_54 chrXVI:769035-769465 2.77e-08 17_[-1(9.11e-11)]_58 chrXVI:775660-776150 4.92e-01 100 chrXVI:794450-796325 3.43e-01 100 chrXVI:810584-811299 7.60e-01 100 chrXVI:819342-820095 7.20e-01 100 chrXVI:856731-857100 2.70e-12 36_[+2(2.48e-09)]_16_[+1(1.16e-08)]_\ 2 chrXVI:860145-860715 1.71e-08 33_[+1(8.05e-11)]_42 chrXVI:880129-880556 1.65e-13 14_[-1(4.86e-12)]_17_[-2(2.44e-08)]_\ 23 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************