# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--PHD1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--PHD1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--PHD1/seqs-shuffled
#   positives: 849 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--PHD1/seqs-centered (Sun Jan 19 00:02:55 PST 2020)
#   negatives: 849 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--PHD1/seqs-shuffled (Sun Jan 19 00:02:55 PST 2020)
#        host: kali.stanford.edu
#        when: Sun Jan 19 00:19:37 PST 2020

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.296 C 0.203 G 0.204 T 0.297


MOTIF SRGTTCGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    SRGTTCGA   TCGAACYS         82          7   2.2e-018   7.9e-014
#         CGGTTCGA   TCGAACCG         26          2   1.3e-006   4.7e-002
#         GGGTTCGA   TCGAACCC         31          4   1.4e-006   5.1e-002
#         CAGTTCGA   TCGAACTG         10          0   9.5e-004   3.5e+001
#         GAGTTCGA   TCGAACTC         15          2   1.1e-003   4.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 82 E= 7.9e-014
0.000000 0.439024 0.560976 0.000000
0.304878 0.000000 0.695122 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAADAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAADAA   TTHTTTTT        170         79   2.3e-010   8.4e-006
#         AAAAAGAA   TTCTTTTT         66         27   2.0e-005   7.3e-001
#         AAAAATAA   TTATTTTT         56         22   5.2e-005   1.9e+000
#         AAAAAAAA   TTTTTTTT         80         43   3.5e-004   1.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 199 E= 8.4e-006
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.396985 0.000000 0.321608 0.281407
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGTGGTW DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AGTGGTW    WACCACT         62         12   6.7e-010   2.4e-005
#          AGTGGTT    AACCACT         41          9   2.1e-006   7.5e-002
#          AGTGGTA    TACCACT         28          4   8.2e-006   3.0e-001

letter-probability matrix: alength= 4 w= 7 nsites= 70 E= 2.4e-005
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.400000 0.000000 0.000000 0.600000


# Stopping reason: E-value threshold exceeded
#    Running time: 21.97 seconds