******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--PDR8/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71784-73279 1.0000 100 chrI:73536-73702 1.0000 100 chrI:81878-82349 1.0000 100 chrI:138962-139361 1.0000 100 chrI:166168-166587 1.0000 100 chrI:180928-181522 1.0000 100 chrI:182197-183173 1.0000 100 chrII:9370-9833 1.0000 100 chrII:36235-36808 1.0000 100 chrII:44932-45396 1.0000 100 chrII:45986-46374 1.0000 100 chrII:59567-60529 1.0000 100 chrII:60709-61283 1.0000 100 chrII:89570-90389 1.0000 100 chrII:165055-165473 1.0000 100 chrII:167813-168246 1.0000 100 chrII:180993-181701 1.0000 100 chrII:197233-197846 1.0000 100 chrII:226969-227354 1.0000 100 chrII:266195-266668 1.0000 100 chrII:326568-327099 1.0000 100 chrII:332250-332995 1.0000 100 chrII:347392-347941 1.0000 100 chrII:350599-351052 1.0000 100 chrII:405678-406270 1.0000 100 chrII:415510-415894 1.0000 100 chrII:476847-477737 1.0000 100 chrII:592813-593775 1.0000 100 chrII:604030-604539 1.0000 100 chrII:604709-606314 1.0000 100 chrII:612262-613906 1.0000 100 chrII:642815-643253 1.0000 100 chrII:644814-645427 1.0000 100 chrII:680064-682457 1.0000 100 chrIII:63-1033 1.0000 100 chrIII:30582-31172 1.0000 100 chrIII:58658-59024 1.0000 100 chrIII:82392-82689 1.0000 100 chrIII:90855-91159 1.0000 100 chrIII:123199-123818 1.0000 100 chrIII:127581-127906 1.0000 100 chrIII:142612-142979 1.0000 100 chrIII:149730-150195 1.0000 100 chrIII:151041-151589 1.0000 100 chrIII:163430-163906 1.0000 100 chrIII:168025-168545 1.0000 100 chrIII:177161-178766 1.0000 100 chrIII:227747-228441 1.0000 100 chrIII:295318-296032 1.0000 100 chrIII:315637-316598 1.0000 100 chrIV:11-338 1.0000 100 chrIV:83427-83826 1.0000 100 chrIV:117147-117727 1.0000 100 chrIV:118432-118713 1.0000 100 chrIV:129914-131024 1.0000 100 chrIV:216600-217653 1.0000 100 chrIV:221024-223138 1.0000 100 chrIV:229423-230730 1.0000 100 chrIV:307941-308626 1.0000 100 chrIV:321613-322001 1.0000 100 chrIV:340642-342230 1.0000 100 chrIV:358026-358521 1.0000 100 chrIV:359321-359780 1.0000 100 chrIV:386891-387145 1.0000 100 chrIV:410186-410818 1.0000 100 chrIV:411218-412973 1.0000 100 chrIV:434054-434874 1.0000 100 chrIV:437556-438031 1.0000 100 chrIV:488453-489193 1.0000 100 chrIV:490949-491287 1.0000 100 chrIV:519657-519912 1.0000 100 chrIV:520718-521414 1.0000 100 chrIV:538831-539256 1.0000 100 chrIV:568691-569387 1.0000 100 chrIV:578773-580660 1.0000 100 chrIV:619713-620240 1.0000 100 chrIV:644908-645377 1.0000 100 chrIV:667648-668216 1.0000 100 chrIV:758462-759652 1.0000 100 chrIV:802572-803029 1.0000 100 chrIV:835721-836321 1.0000 100 chrIV:884255-885052 1.0000 100 chrIV:946133-946636 1.0000 100 chrIV:980746-981172 1.0000 100 chrIV:992687-993239 1.0000 100 chrIV:1013740-1013979 1.0000 100 chrIV:1016952-1017479 1.0000 100 chrIV:1075228-1075755 1.0000 100 chrIV:1095114-1095670 1.0000 100 chrIV:1150699-1151169 1.0000 100 chrIV:1162528-1164671 1.0000 100 chrIV:1175564-1176106 1.0000 100 chrIV:1201526-1202144 1.0000 100 chrIV:1256819-1257282 1.0000 100 chrIV:1267947-1269420 1.0000 100 chrIV:1300340-1301388 1.0000 100 chrIV:1305403-1306067 1.0000 100 chrIV:1352028-1353404 1.0000 100 chrIV:1355710-1356029 1.0000 100 chrIV:1359371-1359948 1.0000 100 chrIV:1401058-1402515 1.0000 100 chrIV:1450543-1451620 1.0000 100 chrIV:1461491-1461851 1.0000 100 chrIX:23456-25246 1.0000 100 chrIX:68180-68505 1.0000 100 chrIX:99597-100090 1.0000 100 chrIX:128241-129664 1.0000 100 chrIX:174854-175595 1.0000 100 chrIX:183311-183716 1.0000 100 chrIX:197377-197842 1.0000 100 chrIX:210503-211701 1.0000 100 chrIX:248516-249014 1.0000 100 chrIX:254207-254583 1.0000 100 chrIX:255185-256949 1.0000 100 chrIX:257337-258171 1.0000 100 chrIX:300011-300524 1.0000 100 chrIX:315748-318734 1.0000 100 chrIX:322402-324391 1.0000 100 chrIX:325732-326129 1.0000 100 chrIX:336082-336613 1.0000 100 chrIX:370212-370693 1.0000 100 chrIX:370946-371114 1.0000 100 chrIX:382087-382886 1.0000 100 chrIX:391396-392129 1.0000 100 chrV:53488-54015 1.0000 100 chrV:61045-62149 1.0000 100 chrV:67168-68893 1.0000 100 chrV:69099-69318 1.0000 100 chrV:85112-87153 1.0000 100 chrV:99701-100343 1.0000 100 chrV:110341-111102 1.0000 100 chrV:117203-118316 1.0000 100 chrV:130792-131401 1.0000 100 chrV:134397-136064 1.0000 100 chrV:138461-139956 1.0000 100 chrV:140201-140921 1.0000 100 chrV:176913-177428 1.0000 100 chrV:249787-250535 1.0000 100 chrV:270016-270918 1.0000 100 chrV:288167-288733 1.0000 100 chrV:305813-306934 1.0000 100 chrV:311703-312273 1.0000 100 chrV:354710-355347 1.0000 100 chrV:362153-363267 1.0000 100 chrV:395974-396589 1.0000 100 chrV:423065-423529 1.0000 100 chrV:430988-431943 1.0000 100 chrV:434379-434977 1.0000 100 chrV:435634-436014 1.0000 100 chrV:438489-438958 1.0000 100 chrV:441772-442639 1.0000 100 chrV:443080-443380 1.0000 100 chrV:469174-470404 1.0000 100 chrV:487099-487603 1.0000 100 chrV:492172-492559 1.0000 100 chrV:551006-551586 1.0000 100 chrVI:4602-4786 1.0000 100 chrVI:64275-65385 1.0000 100 chrVI:95419-95941 1.0000 100 chrVI:101154-101551 1.0000 100 chrVI:136678-137709 1.0000 100 chrVI:157835-158246 1.0000 100 chrVI:162031-162730 1.0000 100 chrVI:167259-167662 1.0000 100 chrVI:180615-181679 1.0000 100 chrVI:191194-192029 1.0000 100 chrVI:210454-211098 1.0000 100 chrVI:220507-222244 1.0000 100 chrVI:223237-224160 1.0000 100 chrVI:226617-227319 1.0000 100 chrVII:276-964 1.0000 100 chrVII:110267-110785 1.0000 100 chrVII:115333-115744 1.0000 100 chrVII:122082-122824 1.0000 100 chrVII:148193-149831 1.0000 100 chrVII:185505-185909 1.0000 100 chrVII:205301-205764 1.0000 100 chrVII:254105-254704 1.0000 100 chrVII:277012-277453 1.0000 100 chrVII:287176-287705 1.0000 100 chrVII:290931-291931 1.0000 100 chrVII:310402-312245 1.0000 100 chrVII:319257-320148 1.0000 100 chrVII:328391-329187 1.0000 100 chrVII:365773-366658 1.0000 100 chrVII:371162-371550 1.0000 100 chrVII:405461-405831 1.0000 100 chrVII:412007-412590 1.0000 100 chrVII:422680-423377 1.0000 100 chrVII:438421-439872 1.0000 100 chrVII:440525-440995 1.0000 100 chrVII:479265-482693 1.0000 100 chrVII:516685-518934 1.0000 100 chrVII:531314-531797 1.0000 100 chrVII:533815-535192 1.0000 100 chrVII:541703-542342 1.0000 100 chrVII:544404-544902 1.0000 100 chrVII:555117-555912 1.0000 100 chrVII:648773-649382 1.0000 100 chrVII:661548-661974 1.0000 100 chrVII:700407-701241 1.0000 100 chrVII:706936-707187 1.0000 100 chrVII:726190-728040 1.0000 100 chrVII:730954-731864 1.0000 100 chrVII:736198-736950 1.0000 100 chrVII:738930-739541 1.0000 100 chrVII:774132-774686 1.0000 100 chrVII:779402-779909 1.0000 100 chrVII:788126-788781 1.0000 100 chrVII:794107-794572 1.0000 100 chrVII:823340-823708 1.0000 100 chrVII:828396-828959 1.0000 100 chrVII:845467-846362 1.0000 100 chrVII:856683-857676 1.0000 100 chrVII:876187-876982 1.0000 100 chrVII:878553-879107 1.0000 100 chrVII:882434-883863 1.0000 100 chrVII:930869-931172 1.0000 100 chrVII:1000311-1000605 1.0000 100 chrVII:1004047-1004438 1.0000 100 chrVII:1011095-1011405 1.0000 100 chrVIII:34516-36115 1.0000 100 chrVIII:62484-63299 1.0000 100 chrVIII:74736-75890 1.0000 100 chrVIII:103662-105407 1.0000 100 chrVIII:115941-116366 1.0000 100 chrVIII:119662-121550 1.0000 100 chrVIII:125873-126331 1.0000 100 chrVIII:133841-134917 1.0000 100 chrVIII:145766-146465 1.0000 100 chrVIII:148924-149304 1.0000 100 chrVIII:173499-175764 1.0000 100 chrVIII:214143-214340 1.0000 100 chrVIII:237051-237596 1.0000 100 chrVIII:237762-238158 1.0000 100 chrVIII:296843-297271 1.0000 100 chrVIII:297446-297699 1.0000 100 chrVIII:358276-358799 1.0000 100 chrVIII:381456-382338 1.0000 100 chrVIII:382855-383363 1.0000 100 chrVIII:388607-389007 1.0000 100 chrVIII:451330-453401 1.0000 100 chrVIII:466819-467332 1.0000 100 chrVIII:475533-475909 1.0000 100 chrVIII:505793-506221 1.0000 100 chrVIII:556603-556920 1.0000 100 chrX:59013-59442 1.0000 100 chrX:73335-76484 1.0000 100 chrX:89895-90470 1.0000 100 chrX:115736-116267 1.0000 100 chrX:120505-121892 1.0000 100 chrX:138794-140174 1.0000 100 chrX:157380-157918 1.0000 100 chrX:197195-197438 1.0000 100 chrX:204544-205099 1.0000 100 chrX:233667-234167 1.0000 100 chrX:353987-354475 1.0000 100 chrX:355181-355754 1.0000 100 chrX:374201-374853 1.0000 100 chrX:378191-378571 1.0000 100 chrX:389880-390355 1.0000 100 chrX:390560-392156 1.0000 100 chrX:396422-396954 1.0000 100 chrX:414500-415266 1.0000 100 chrX:415801-416229 1.0000 100 chrX:422726-423381 1.0000 100 chrX:424265-424727 1.0000 100 chrX:517656-518077 1.0000 100 chrX:523109-524388 1.0000 100 chrX:531555-532439 1.0000 100 chrX:538031-538785 1.0000 100 chrX:540961-541713 1.0000 100 chrX:542723-543260 1.0000 100 chrX:545113-545754 1.0000 100 chrX:607878-608152 1.0000 100 chrX:617707-618252 1.0000 100 chrX:651246-651607 1.0000 100 chrX:651875-653011 1.0000 100 chrX:702546-703798 1.0000 100 chrX:745009-745749 1.0000 100 chrXI:46710-46995 1.0000 100 chrXI:67728-68061 1.0000 100 chrXI:74364-74810 1.0000 100 chrXI:83984-84449 1.0000 100 chrXI:99735-99956 1.0000 100 chrXI:107416-110106 1.0000 100 chrXI:140626-141485 1.0000 100 chrXI:158163-158665 1.0000 100 chrXI:162285-162732 1.0000 100 chrXI:202502-203275 1.0000 100 chrXI:219605-220118 1.0000 100 chrXI:283061-284477 1.0000 100 chrXI:302696-303206 1.0000 100 chrXI:307935-308568 1.0000 100 chrXI:313188-314013 1.0000 100 chrXI:326412-327410 1.0000 100 chrXI:379676-379945 1.0000 100 chrXI:382161-382481 1.0000 100 chrXI:430819-431705 1.0000 100 chrXI:457943-458845 1.0000 100 chrXI:490765-491277 1.0000 100 chrXI:513044-513608 1.0000 100 chrXI:517794-518124 1.0000 100 chrXI:558714-559405 1.0000 100 chrXI:578774-579425 1.0000 100 chrXI:618744-619367 1.0000 100 chrXI:630521-630903 1.0000 100 chrXI:666412-666789 1.0000 100 chrXII:11198-11503 1.0000 100 chrXII:48686-49454 1.0000 100 chrXII:92349-92891 1.0000 100 chrXII:167783-168239 1.0000 100 chrXII:198683-199698 1.0000 100 chrXII:214668-215066 1.0000 100 chrXII:232107-234069 1.0000 100 chrXII:241610-242032 1.0000 100 chrXII:261461-263955 1.0000 100 chrXII:366011-366570 1.0000 100 chrXII:369673-370242 1.0000 100 chrXII:370612-370897 1.0000 100 chrXII:374198-374665 1.0000 100 chrXII:424160-424566 1.0000 100 chrXII:426807-427472 1.0000 100 chrXII:440636-441633 1.0000 100 chrXII:448528-448856 1.0000 100 chrXII:459588-460754 1.0000 100 chrXII:498459-499939 1.0000 100 chrXII:515301-517049 1.0000 100 chrXII:521481-523317 1.0000 100 chrXII:592317-592976 1.0000 100 chrXII:605141-605619 1.0000 100 chrXII:627697-628802 1.0000 100 chrXII:636758-639864 1.0000 100 chrXII:656841-657216 1.0000 100 chrXII:673514-674256 1.0000 100 chrXII:713157-713705 1.0000 100 chrXII:731541-732355 1.0000 100 chrXII:734564-734928 1.0000 100 chrXII:780614-781895 1.0000 100 chrXII:783915-784510 1.0000 100 chrXII:793532-795904 1.0000 100 chrXII:796330-797498 1.0000 100 chrXII:805804-806821 1.0000 100 chrXII:818500-819499 1.0000 100 chrXII:837679-839216 1.0000 100 chrXII:875162-875622 1.0000 100 chrXII:897654-899689 1.0000 100 chrXII:903134-904383 1.0000 100 chrXII:921712-923682 1.0000 100 chrXII:931108-931846 1.0000 100 chrXII:932053-932539 1.0000 100 chrXII:951179-953659 1.0000 100 chrXII:962337-963327 1.0000 100 chrXII:975732-976181 1.0000 100 chrXII:1012072-1013736 1.0000 100 chrXII:1018099-1019599 1.0000 100 chrXII:1028176-1028609 1.0000 100 chrXII:1051900-1052229 1.0000 100 chrXIII:91385-92089 1.0000 100 chrXIII:131604-132100 1.0000 100 chrXIII:145568-147232 1.0000 100 chrXIII:161983-162686 1.0000 100 chrXIII:162980-164154 1.0000 100 chrXIII:168221-169046 1.0000 100 chrXIII:183802-183968 1.0000 100 chrXIII:195957-196306 1.0000 100 chrXIII:224632-225902 1.0000 100 chrXIII:253393-253593 1.0000 100 chrXIII:259013-259382 1.0000 100 chrXIII:290542-291152 1.0000 100 chrXIII:296643-298867 1.0000 100 chrXIII:302855-303221 1.0000 100 chrXIII:320841-321328 1.0000 100 chrXIII:352029-353149 1.0000 100 chrXIII:362929-363645 1.0000 100 chrXIII:372207-372659 1.0000 100 chrXIII:379052-379620 1.0000 100 chrXIII:420320-420854 1.0000 100 chrXIII:433476-433770 1.0000 100 chrXIII:463370-463907 1.0000 100 chrXIII:480398-480826 1.0000 100 chrXIII:499067-500692 1.0000 100 chrXIII:500859-501138 1.0000 100 chrXIII:504920-505245 1.0000 100 chrXIII:550049-551828 1.0000 100 chrXIII:552139-553185 1.0000 100 chrXIII:553417-553615 1.0000 100 chrXIII:557487-558421 1.0000 100 chrXIII:572643-573140 1.0000 100 chrXIII:586324-586908 1.0000 100 chrXIII:650774-651076 1.0000 100 chrXIII:651577-652894 1.0000 100 chrXIII:731990-732531 1.0000 100 chrXIII:747638-748135 1.0000 100 chrXIII:752794-754946 1.0000 100 chrXIII:768181-768449 1.0000 100 chrXIII:807939-808552 1.0000 100 chrXIII:837714-838206 1.0000 100 chrXIII:861220-861408 1.0000 100 chrXIII:872690-873079 1.0000 100 chrXIV:6616-7022 1.0000 100 chrXIV:61958-62702 1.0000 100 chrXIV:63079-64241 1.0000 100 chrXIV:96002-96551 1.0000 100 chrXIV:102578-103108 1.0000 100 chrXIV:104621-105048 1.0000 100 chrXIV:240840-242108 1.0000 100 chrXIV:302671-303962 1.0000 100 chrXIV:330734-331164 1.0000 100 chrXIV:331336-331671 1.0000 100 chrXIV:374659-375437 1.0000 100 chrXIV:405695-405962 1.0000 100 chrXIV:413595-414974 1.0000 100 chrXIV:442795-443266 1.0000 100 chrXIV:444235-445335 1.0000 100 chrXIV:493903-495649 1.0000 100 chrXIV:499262-500727 1.0000 100 chrXIV:518811-519140 1.0000 100 chrXIV:525066-525287 1.0000 100 chrXIV:546406-547647 1.0000 100 chrXIV:560590-560873 1.0000 100 chrXIV:568048-568773 1.0000 100 chrXIV:569636-570148 1.0000 100 chrXIV:602084-602560 1.0000 100 chrXIV:631655-632095 1.0000 100 chrXIV:632416-632856 1.0000 100 chrXIV:721203-721789 1.0000 100 chrXIV:721962-722803 1.0000 100 chrXIV:725966-726340 1.0000 100 chrXIV:783495-784326 1.0000 100 chrXV:79709-80148 1.0000 100 chrXV:92756-94180 1.0000 100 chrXV:94386-94813 1.0000 100 chrXV:109501-110660 1.0000 100 chrXV:110857-111207 1.0000 100 chrXV:113581-113987 1.0000 100 chrXV:159131-160143 1.0000 100 chrXV:161077-161693 1.0000 100 chrXV:167947-168572 1.0000 100 chrXV:216273-216709 1.0000 100 chrXV:226400-226892 1.0000 100 chrXV:228114-228570 1.0000 100 chrXV:252872-254115 1.0000 100 chrXV:274477-274999 1.0000 100 chrXV:281981-282430 1.0000 100 chrXV:287781-288429 1.0000 100 chrXV:300889-301875 1.0000 100 chrXV:340167-340695 1.0000 100 chrXV:353887-354333 1.0000 100 chrXV:438449-439022 1.0000 100 chrXV:444646-446234 1.0000 100 chrXV:464277-464945 1.0000 100 chrXV:487433-487789 1.0000 100 chrXV:505020-505541 1.0000 100 chrXV:506128-506712 1.0000 100 chrXV:514188-514705 1.0000 100 chrXV:571620-572143 1.0000 100 chrXV:594309-594658 1.0000 100 chrXV:619983-621358 1.0000 100 chrXV:639113-639464 1.0000 100 chrXV:662887-664104 1.0000 100 chrXV:678517-679191 1.0000 100 chrXV:710123-710717 1.0000 100 chrXV:778588-780990 1.0000 100 chrXV:853835-854807 1.0000 100 chrXV:866333-867245 1.0000 100 chrXV:901427-901676 1.0000 100 chrXV:925199-925410 1.0000 100 chrXV:968092-968537 1.0000 100 chrXV:976269-976898 1.0000 100 chrXV:978771-979173 1.0000 100 chrXV:979748-981119 1.0000 100 chrXV:1004022-1004424 1.0000 100 chrXV:1025713-1026085 1.0000 100 chrXV:1027878-1029863 1.0000 100 chrXVI:55823-56426 1.0000 100 chrXVI:75387-77043 1.0000 100 chrXVI:134838-135837 1.0000 100 chrXVI:188581-188955 1.0000 100 chrXVI:210047-210528 1.0000 100 chrXVI:279974-280240 1.0000 100 chrXVI:281561-282970 1.0000 100 chrXVI:302647-304221 1.0000 100 chrXVI:338478-339120 1.0000 100 chrXVI:340460-340780 1.0000 100 chrXVI:378639-379011 1.0000 100 chrXVI:406177-406616 1.0000 100 chrXVI:432530-434376 1.0000 100 chrXVI:435303-436208 1.0000 100 chrXVI:520037-520557 1.0000 100 chrXVI:559958-560297 1.0000 100 chrXVI:572043-572690 1.0000 100 chrXVI:581819-582292 1.0000 100 chrXVI:622331-623058 1.0000 100 chrXVI:627233-628314 1.0000 100 chrXVI:689391-689862 1.0000 100 chrXVI:699588-700651 1.0000 100 chrXVI:701888-702448 1.0000 100 chrXVI:731881-732317 1.0000 100 chrXVI:744098-744622 1.0000 100 chrXVI:768998-769504 1.0000 100 chrXVI:775646-776078 1.0000 100 chrXVI:794474-796176 1.0000 100 chrXVI:810576-811405 1.0000 100 chrXVI:819328-820294 1.0000 100 chrXVI:856698-857170 1.0000 100 chrXVI:860168-860718 1.0000 100 chrXVI:879835-880566 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--PDR8/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--PDR8/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--PDR8/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 508 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 50800 N= 508 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.300 C 0.200 G 0.200 T 0.300 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--PDR8/background): A 0.306 C 0.194 G 0.194 T 0.306 ******************************************************************************** ******************************************************************************** MOTIF AGRTCMSSGGTTCGAWYCCSSKHKKGRGC MEME-1 width = 29 sites = 87 llr = 1649 E-value = 2.4e-344 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGRTCMSSGGTTCGAWYCCSSKHKKGRGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6132:3:12::::3a2::::2:3122413 pos.-specific C 12117554::::a::14a84314111227 probability G 3661:1348a:::7:2:::455:54545: matrix T :::62:21::aa:::46:21:34321121 bits 2.4 * * 2.1 * * * 1.9 * * * 1.7 **** * * Relative 1.4 ****** * Entropy 1.2 * ******* ** (27.3 bits) 0.9 * * ******* **** * 0.7 ** * * ******* ***** * 0.5 *** *********** ******* * * 0.2 *************** ************* 0.0 ----------------------------- Multilevel AGGTCCCGGGTTCGATTCCGGGCGGGGGC consensus GCAATAGCA A AC TCCTTTT ACA sequence T A A A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCMSSGGTTCGAWYCCSSKHKKGRGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIV:631655-632095 - 22 6.08e-14 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCGGCTCGCCC CCATTGATTT chrXVI:860168-860718 + 27 2.46e-13 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC AGATTTTATT chrXV:281981-282430 + 50 2.46e-13 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC ATTTCTTTTT chrXV:226400-226892 - 16 2.46e-13 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC AAATTTTTTG chrXIII:183802-183968 - 64 2.46e-13 CCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC ATATTTTTTT chrIV:83427-83826 + 13 2.46e-13 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC AAGTTTAATT chrIV:1256819-1257282 - 9 1.27e-12 TCCCAAGCAT GGGGCCCGGGTTCGATTCCCGGCTTCCGC ATTTTTTG chrVIII:475533-475909 - 36 7.63e-12 CACACGGCAA AGGTCCCGAGTTCGATCCTCGGTTGGAAC ATTTTAACAT chrIV:1075228-1075755 - 32 7.63e-12 CACACGGCAA AGGTCCCGAGTTCGATCCTCGGTTGGAAC ATTTGTTTTT chrXIII:807939-808552 - 52 8.89e-12 TCTGATCCGA ACAACCCCAGTTCGAATCCGGGTGGGACC TTCCCTTCAT chrXII:448528-448856 - 9 8.89e-12 TTTGATCCGG ACAACCCCGGTTCGAATCCGGGTAGGACC TTCTTTTT chrVIII:133841-134917 + 34 8.89e-12 TTTGATCCGG ACAACCCCGGTTCGAATCCGGGTAGGACC TTTTTTTGCT chrIV:644908-645377 - 62 8.89e-12 TTTGATCCGG ACAACCCCGGTTCGAATCCGGGTAGGACC TTTTTTAACT chrIII:168025-168545 - 67 8.89e-12 TCCGG ACAACCCCGGTTCGAATCCGGGTAGGACC TTTTTTTGAA chrXIV:569636-570148 - 26 1.20e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACC ATTCTTTTTT chrXII:1051900-1052229 - 58 1.20e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACC ATTATTTTTT chrV:551006-551586 - 40 1.20e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACC ATTTTTTTTG chrV:443080-443380 - 23 1.20e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACC ATATTTTTTT chrII:197233-197846 + 49 1.20e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACC ATTTTTTTGC chrXIII:480398-480826 - 60 2.16e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCTACAGGGC TTCTTTTTTT chrVII:185505-185909 - 58 2.16e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCTACAGGGC TATCTTTTTT chrIX:300011-300524 - 12 2.16e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCTACAGGGC TATCTTTTTA chrIV:1201526-1202144 + 8 2.16e-11 AATCATA AGGTTAGGGGTTCGAGCCCCCTACAGGGC TAATAACACA chrIII:151041-151589 - 20 2.16e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCTACAGGGC TTTCTTTTTT chrXII:214668-215066 - 67 2.49e-11 GGAAG AGGTCATCGGTTCGATTCCGGTTGCGTCC ATTTATTTTT chrIV:488453-489193 - 25 3.29e-11 TACACGGCGA AGATCCCGAGTTCGAACCTCGGTTGGATC AGAATCTTTT chrII:326568-327099 - 10 3.29e-11 TACACGGCGA AGATCCCGAGTTCGAACCTCGGTTGGATC AAACTCTTT chrV:130792-131401 - 37 4.34e-11 TTTGATCCGA ACAACCCCGGTTCGAATCCGGGTAAGACC TATTTTTTTC chrXIII:586324-586908 - 71 6.50e-11 A ACGTCCCCAGTTCGATCCTGGGCGAAATC ATTTTTTTGA chrXIII:420320-420854 - 52 6.50e-11 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATC ATTTTTATCT chrXIII:372207-372659 - 63 6.50e-11 ACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATC ATTTTTTTAG chrVII:823340-823708 + 52 6.50e-11 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATC ATTTTTTGAA chrVII:412007-412590 - 47 6.50e-11 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATC AAGTTTTATT chrV:438489-438958 + 71 6.50e-11 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATC A chrIV:1016952-1017479 - 43 1.59e-10 TCTCACCGTG GAGACCGGGGTTCGACTCCCCGCTTCGGA GTTTCTTTTT chrXII:92349-92891 + 51 1.80e-10 AGCATGCGAG AGGCCCTGGGTTCAATTCCCAGCTCGCCC CTTTATTTTC chrXIV:560590-560873 - 13 3.69e-10 AGTAATGTGG AGATCATCGGTTCAAATCCGATTGGAAGC ATAATTTTTT chrXIV:104621-105048 + 64 3.69e-10 AGTAATGTGG AGATCATCGGTTCAAATCCGATTGGAAGC ATATTATT chrVIII:115941-116366 - 5 3.69e-10 AGTAATGTGG AGATCATCGGTTCAAATCCGATTGGAAGC ATTT chrII:266195-266668 + 40 3.69e-10 AGTAATGTGG AGATCATCGGTTCAAATCCGATTGGAAGC ATTTTTTTGA chrXIV:96002-96551 - 16 4.15e-10 TTCCAAGGTG GGGACACGGGTTCGATTCTCGTACCGCTC AAATTTTTTG chrVII:779402-779909 + 53 4.15e-10 TTCCAAGGTG GGGACACGGGTTCGATTCTCGTACCGCTC AAGATTACTT chrXIII:290542-291152 + 46 5.83e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGA GTCTTCTTTT chrXI:140626-141485 - 14 5.83e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGA GTTTTCATTA chrV:487099-487603 - 31 5.83e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGA GTATTCGTTA chrV:176913-177428 + 21 5.83e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGA GTACTTTTTT chrIX:370212-370693 + 57 5.83e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGA GTATGTTTAT chrXII:374198-374665 + 17 6.52e-10 ACGAACCAGA AGATTCCAGGTTCAAGTCCTGGCGGGGAA GATTTTTTTG chrXI:490765-491277 + 40 6.52e-10 ACGAACCAGA AGATTCCAGGTTCAAGTCCTGGCGGGGAA GAATTTTTTT chrV:492172-492559 - 38 6.52e-10 ACGAACCAGA AGATTCCAGGTTCAAGTCCTGGCGGGGAA GGATTATTTT chrIV:619713-620240 - 44 6.52e-10 ACGAACCAGA AGATTCCAGGTTCAAGTCCTGGCGGGGAA GATTTTTTAT chrXVI:768998-769504 - 7 8.13e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCCTATGAGGA GTTCTT chrXV:438449-439022 + 24 8.13e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCCTATGAGGA GTTCTTTATT chrVII:115333-115744 + 66 8.13e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCCTATGAGGA GTTCTT chrXVI:856698-857170 + 61 1.71e-09 AGCATGGGAG AGGTCTCCGGTTCGATTCCGGACTCGTCC ATTTTAATTT chrX:197195-197438 - 48 1.71e-09 AGCATGGGAG AGGTCTCCGGTTCGATTCCGGACTCGTCC AATTTCTTTT chrVII:774132-774686 + 33 1.71e-09 AGCATGGGAG AGGTCTCCGGTTCGATTCCGGACTCGTCC AAATTTTTTT chrXIII:747638-748135 - 57 2.31e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCATCGTGAGT GTTTTTTAGT chrXIII:131604-132100 - 24 2.31e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCATCGTGAGT GCTTTGTTTC chrXI:162285-162732 - 30 2.31e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCATCGTGAGT GTTTTTTACA chrX:374201-374853 - 30 2.31e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCATCGTGAGT GCTTTGTTTC chrVIII:466819-467332 + 7 2.55e-09 ATGCAA AGGTCGCTAGTTCAATTCTGGCAGGTGGC ATTATACCGG chrXIII:463370-463907 + 8 3.11e-09 CGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTTTTA chrXI:513044-513608 - 57 3.11e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTTTAT chrX:204544-205099 + 6 3.11e-09 CGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTTTTT chrIX:336082-336613 - 53 3.11e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTTTTA chrXIII:572643-573140 - 43 4.14e-09 CATAATCTGA AGGTCGAGAGTTCGAACCTCCCCTGGAGC ACATTTTTTT chrXIV:632416-632856 + 57 6.02e-09 GTTAATCGCA AGATCGTGAGTTCAACCCTCACTGGGGTC GTTTTTTTTC chrIII:127581-127906 + 67 6.02e-09 GTTAATCGCA AGATCGTGAGTTCAACCCTCACTGGGGTC GTTAA chrIV:568691-569387 + 17 8.64e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCACGGA GAATTTTTTT chrIV:1095114-1095670 - 29 1.33e-08 AGATATCTGG AGGTCCTGTGTTCGATCCACAGAGTTCGC ATTTTTATTT chrII:642815-643253 - 24 1.33e-08 GCAAATCTGT TGGTCCTTAGTTCGATCCTGAGTGCGAGC TTCTTTTTTT chrXVI:744098-744622 + 16 2.02e-08 TGTAATGCAA AGGTCGTTAGTTCAATTCTGACAGGTGGC AAAATTTTTT chrVII:1004047-1004438 + 66 2.02e-08 TGTAATGCAA AGGTCGTTAGTTCAATTCTGACAGGTGGC AGTTTC chrXIII:379052-379620 - 18 3.02e-08 TGCAATCGAA GGGTTGCAGGTTCAATTCCTGTCCGTTTC AATTTATTTT chrVII:440525-440995 - 7 4.77e-08 AGTTATCTGG AGGTCCTGTGTTCGATCCACAGAATTCGC ATAATA chrXIV:725966-726340 + 35 5.96e-08 AAATACTGAA GGATGCGAGGTTCGAACTCGCGCGGACAA CCGTCCAACA chrIV:519657-519912 - 60 5.96e-08 AGTTATTGAA GGATGCGAGGTTCGAACTCGCGCGGACAA CCGTCCAACA chrII:347392-347941 - 38 5.96e-08 TATTACTGAA GGATGCGAGGTTCGAACTCGCGCGGACAA CCGTCCAACA chrXIII:259013-259382 - 12 1.05e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTGCAGTTGTC GTTATTTTTT chrIV:980746-981172 - 66 1.05e-07 GCTTTG CCCGCGCAGGTTCGAGTCCTGCAGTTGTC GTTTTTACCA chrII:226969-227354 + 16 1.05e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTGCAGTTGTC GTTATTTTTT chrXVI:689391-689862 + 41 2.15e-07 TTGGGCTCTG CCCGCGCTGGTTCAAATCCTGCTGGTGTC GTATTATTTT chrV:288167-288733 - 44 2.15e-07 TTGGGCTCTG CCCGCGCTGGTTCAAATCCTGCTGGTGTC GTTTTTTTTA chrXV:274477-274999 + 56 2.76e-07 TTGGGTTTTA CCTGCGCAGGTTCGAATCCTGTCTGTGAC GCATTTCTTT chrIII:149730-150195 + 50 4.69e-07 CATAACCCTG ATGTCCTCGGATCGAAACCGAGCGGCGCT ATTAAATTTT chrII:89570-90389 - 60 6.93e-06 TCAGGCTCAA ACGTCATATCTTCGATTTCGATTTCGTCA TATGTTGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCMSSGGTTCGAWYCCSSKHKKGRGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631655-632095 6.1e-14 21_[-1]_50 chrXVI:860168-860718 2.5e-13 26_[+1]_45 chrXV:281981-282430 2.5e-13 49_[+1]_22 chrXV:226400-226892 2.5e-13 15_[-1]_56 chrXIII:183802-183968 2.5e-13 63_[-1]_8 chrIV:83427-83826 2.5e-13 12_[+1]_59 chrIV:1256819-1257282 1.3e-12 8_[-1]_63 chrVIII:475533-475909 7.6e-12 35_[-1]_36 chrIV:1075228-1075755 7.6e-12 31_[-1]_40 chrXIII:807939-808552 8.9e-12 51_[-1]_20 chrXII:448528-448856 8.9e-12 8_[-1]_63 chrVIII:133841-134917 8.9e-12 33_[+1]_38 chrIV:644908-645377 8.9e-12 61_[-1]_10 chrIII:168025-168545 8.9e-12 66_[-1]_5 chrXIV:569636-570148 1.2e-11 25_[-1]_46 chrXII:1051900-1052229 1.2e-11 57_[-1]_14 chrV:551006-551586 1.2e-11 39_[-1]_32 chrV:443080-443380 1.2e-11 22_[-1]_49 chrII:197233-197846 1.2e-11 48_[+1]_23 chrXIII:480398-480826 2.2e-11 59_[-1]_12 chrVII:185505-185909 2.2e-11 57_[-1]_14 chrIX:300011-300524 2.2e-11 11_[-1]_60 chrIV:1201526-1202144 2.2e-11 7_[+1]_64 chrIII:151041-151589 2.2e-11 19_[-1]_52 chrXII:214668-215066 2.5e-11 66_[-1]_5 chrIV:488453-489193 3.3e-11 24_[-1]_47 chrII:326568-327099 3.3e-11 9_[-1]_62 chrV:130792-131401 4.3e-11 36_[-1]_35 chrXIII:586324-586908 6.5e-11 70_[-1]_1 chrXIII:420320-420854 6.5e-11 51_[-1]_20 chrXIII:372207-372659 6.5e-11 62_[-1]_9 chrVII:823340-823708 6.5e-11 51_[+1]_20 chrVII:412007-412590 6.5e-11 46_[-1]_25 chrV:438489-438958 6.5e-11 70_[+1]_1 chrIV:1016952-1017479 1.6e-10 42_[-1]_29 chrXII:92349-92891 1.8e-10 50_[+1]_21 chrXIV:560590-560873 3.7e-10 12_[-1]_59 chrXIV:104621-105048 3.7e-10 63_[+1]_8 chrVIII:115941-116366 3.7e-10 4_[-1]_67 chrII:266195-266668 3.7e-10 39_[+1]_32 chrXIV:96002-96551 4.1e-10 15_[-1]_56 chrVII:779402-779909 4.1e-10 52_[+1]_19 chrXIII:290542-291152 5.8e-10 45_[+1]_26 chrXI:140626-141485 5.8e-10 13_[-1]_58 chrV:487099-487603 5.8e-10 30_[-1]_41 chrV:176913-177428 5.8e-10 20_[+1]_51 chrIX:370212-370693 5.8e-10 56_[+1]_15 chrXII:374198-374665 6.5e-10 16_[+1]_55 chrXI:490765-491277 6.5e-10 39_[+1]_32 chrV:492172-492559 6.5e-10 37_[-1]_34 chrIV:619713-620240 6.5e-10 43_[-1]_28 chrXVI:768998-769504 8.1e-10 6_[-1]_65 chrXV:438449-439022 8.1e-10 23_[+1]_48 chrVII:115333-115744 8.1e-10 65_[+1]_6 chrXVI:856698-857170 1.7e-09 60_[+1]_11 chrX:197195-197438 1.7e-09 47_[-1]_24 chrVII:774132-774686 1.7e-09 32_[+1]_39 chrXIII:747638-748135 2.3e-09 56_[-1]_15 chrXIII:131604-132100 2.3e-09 23_[-1]_48 chrXI:162285-162732 2.3e-09 29_[-1]_42 chrX:374201-374853 2.3e-09 29_[-1]_42 chrVIII:466819-467332 2.6e-09 6_[+1]_65 chrXIII:463370-463907 3.1e-09 7_[+1]_64 chrXI:513044-513608 3.1e-09 56_[-1]_15 chrX:204544-205099 3.1e-09 5_[+1]_66 chrIX:336082-336613 3.1e-09 52_[-1]_19 chrXIII:572643-573140 4.1e-09 42_[-1]_29 chrXIV:632416-632856 6e-09 56_[+1]_15 chrIII:127581-127906 6e-09 66_[+1]_5 chrIV:568691-569387 8.6e-09 16_[+1]_55 chrIV:1095114-1095670 1.3e-08 28_[-1]_43 chrII:642815-643253 1.3e-08 23_[-1]_48 chrXVI:744098-744622 2e-08 15_[+1]_56 chrVII:1004047-1004438 2e-08 65_[+1]_6 chrXIII:379052-379620 3e-08 17_[-1]_54 chrVII:440525-440995 4.8e-08 6_[-1]_65 chrXIV:725966-726340 6e-08 34_[+1]_37 chrIV:519657-519912 6e-08 59_[-1]_12 chrII:347392-347941 6e-08 37_[-1]_34 chrXIII:259013-259382 1e-07 11_[-1]_60 chrIV:980746-981172 1e-07 65_[-1]_6 chrII:226969-227354 1e-07 15_[+1]_56 chrXVI:689391-689862 2.2e-07 40_[+1]_31 chrV:288167-288733 2.2e-07 43_[-1]_28 chrXV:274477-274999 2.8e-07 55_[+1]_16 chrIII:149730-150195 4.7e-07 49_[+1]_22 chrII:89570-90389 6.9e-06 59_[-1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCMSSGGTTCGAWYCCSSKHKKGRGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGRTCMSSGGTTCGAWYCCSSKHKKGRGC width=29 seqs=87 chrXIV:631655-632095 ( 22) AGGTCCCGGGTTCGAGTCCCGGCTCGCCC 1 chrXVI:860168-860718 ( 27) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrXV:281981-282430 ( 50) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrXV:226400-226892 ( 16) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrXIII:183802-183968 ( 64) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrIV:83427-83826 ( 13) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrIV:1256819-1257282 ( 9) GGGGCCCGGGTTCGATTCCCGGCTTCCGC 1 chrVIII:475533-475909 ( 36) AGGTCCCGAGTTCGATCCTCGGTTGGAAC 1 chrIV:1075228-1075755 ( 32) AGGTCCCGAGTTCGATCCTCGGTTGGAAC 1 chrXIII:807939-808552 ( 52) ACAACCCCAGTTCGAATCCGGGTGGGACC 1 chrXII:448528-448856 ( 9) ACAACCCCGGTTCGAATCCGGGTAGGACC 1 chrVIII:133841-134917 ( 34) ACAACCCCGGTTCGAATCCGGGTAGGACC 1 chrIV:644908-645377 ( 62) ACAACCCCGGTTCGAATCCGGGTAGGACC 1 chrIII:168025-168545 ( 67) ACAACCCCGGTTCGAATCCGGGTAGGACC 1 chrXIV:569636-570148 ( 26) GGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrXII:1051900-1052229 ( 58) GGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrV:551006-551586 ( 40) GGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrV:443080-443380 ( 23) GGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrII:197233-197846 ( 49) GGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrXIII:480398-480826 ( 60) AGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrVII:185505-185909 ( 58) AGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrIX:300011-300524 ( 12) AGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrIV:1201526-1202144 ( 8) AGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrIII:151041-151589 ( 20) AGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrXII:214668-215066 ( 67) AGGTCATCGGTTCGATTCCGGTTGCGTCC 1 chrIV:488453-489193 ( 25) AGATCCCGAGTTCGAACCTCGGTTGGATC 1 chrII:326568-327099 ( 10) AGATCCCGAGTTCGAACCTCGGTTGGATC 1 chrV:130792-131401 ( 37) ACAACCCCGGTTCGAATCCGGGTAAGACC 1 chrXIII:586324-586908 ( 71) ACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrXIII:420320-420854 ( 52) ACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrXIII:372207-372659 ( 63) ACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrVII:823340-823708 ( 52) ACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrVII:412007-412590 ( 47) ACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrV:438489-438958 ( 71) ACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrIV:1016952-1017479 ( 43) GAGACCGGGGTTCGACTCCCCGCTTCGGA 1 chrXII:92349-92891 ( 51) AGGCCCTGGGTTCAATTCCCAGCTCGCCC 1 chrXIV:560590-560873 ( 13) AGATCATCGGTTCAAATCCGATTGGAAGC 1 chrXIV:104621-105048 ( 64) AGATCATCGGTTCAAATCCGATTGGAAGC 1 chrVIII:115941-116366 ( 5) AGATCATCGGTTCAAATCCGATTGGAAGC 1 chrII:266195-266668 ( 40) AGATCATCGGTTCAAATCCGATTGGAAGC 1 chrXIV:96002-96551 ( 16) GGGACACGGGTTCGATTCTCGTACCGCTC 1 chrVII:779402-779909 ( 53) GGGACACGGGTTCGATTCTCGTACCGCTC 1 chrXIII:290542-291152 ( 46) GAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrXI:140626-141485 ( 14) GAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrV:487099-487603 ( 31) GAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrV:176913-177428 ( 21) GAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrIX:370212-370693 ( 57) GAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrXII:374198-374665 ( 17) AGATTCCAGGTTCAAGTCCTGGCGGGGAA 1 chrXI:490765-491277 ( 40) AGATTCCAGGTTCAAGTCCTGGCGGGGAA 1 chrV:492172-492559 ( 38) AGATTCCAGGTTCAAGTCCTGGCGGGGAA 1 chrIV:619713-620240 ( 44) AGATTCCAGGTTCAAGTCCTGGCGGGGAA 1 chrXVI:768998-769504 ( 7) ATGTCAGGGGTTCGAGCCCCCTATGAGGA 1 chrXV:438449-439022 ( 24) ATGTCAGGGGTTCGAGCCCCCTATGAGGA 1 chrVII:115333-115744 ( 66) ATGTCAGGGGTTCGAGCCCCCTATGAGGA 1 chrXVI:856698-857170 ( 61) AGGTCTCCGGTTCGATTCCGGACTCGTCC 1 chrX:197195-197438 ( 48) AGGTCTCCGGTTCGATTCCGGACTCGTCC 1 chrVII:774132-774686 ( 33) AGGTCTCCGGTTCGATTCCGGACTCGTCC 1 chrXIII:747638-748135 ( 57) AGATTATGGGTTCGACCCCCATCGTGAGT 1 chrXIII:131604-132100 ( 24) AGATTATGGGTTCGACCCCCATCGTGAGT 1 chrXI:162285-162732 ( 30) AGATTATGGGTTCGACCCCCATCGTGAGT 1 chrX:374201-374853 ( 30) AGATTATGGGTTCGACCCCCATCGTGAGT 1 chrVIII:466819-467332 ( 7) AGGTCGCTAGTTCAATTCTGGCAGGTGGC 1 chrXIII:463370-463907 ( 8) CAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrXI:513044-513608 ( 57) CAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrX:204544-205099 ( 6) CAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrIX:336082-336613 ( 53) CAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrXIII:572643-573140 ( 43) AGGTCGAGAGTTCGAACCTCCCCTGGAGC 1 chrXIV:632416-632856 ( 57) AGATCGTGAGTTCAACCCTCACTGGGGTC 1 chrIII:127581-127906 ( 67) AGATCGTGAGTTCAACCCTCACTGGGGTC 1 chrIV:568691-569387 ( 17) CAGATCGGGGTTCAATTCCCCGTCACGGA 1 chrIV:1095114-1095670 ( 29) AGGTCCTGTGTTCGATCCACAGAGTTCGC 1 chrII:642815-643253 ( 24) TGGTCCTTAGTTCGATCCTGAGTGCGAGC 1 chrXVI:744098-744622 ( 16) AGGTCGTTAGTTCAATTCTGACAGGTGGC 1 chrVII:1004047-1004438 ( 66) AGGTCGTTAGTTCAATTCTGACAGGTGGC 1 chrXIII:379052-379620 ( 18) GGGTTGCAGGTTCAATTCCTGTCCGTTTC 1 chrVII:440525-440995 ( 7) AGGTCCTGTGTTCGATCCACAGAATTCGC 1 chrXIV:725966-726340 ( 35) GGATGCGAGGTTCGAACTCGCGCGGACAA 1 chrIV:519657-519912 ( 60) GGATGCGAGGTTCGAACTCGCGCGGACAA 1 chrII:347392-347941 ( 38) GGATGCGAGGTTCGAACTCGCGCGGACAA 1 chrXIII:259013-259382 ( 12) CCCGCGCAGGTTCGAGTCCTGCAGTTGTC 1 chrIV:980746-981172 ( 66) CCCGCGCAGGTTCGAGTCCTGCAGTTGTC 1 chrII:226969-227354 ( 16) CCCGCGCAGGTTCGAGTCCTGCAGTTGTC 1 chrXVI:689391-689862 ( 41) CCCGCGCTGGTTCAAATCCTGCTGGTGTC 1 chrV:288167-288733 ( 44) CCCGCGCTGGTTCAAATCCTGCTGGTGTC 1 chrXV:274477-274999 ( 56) CCTGCGCAGGTTCGAATCCTGTCTGTGAC 1 chrIII:149730-150195 ( 50) ATGTCCTCGGATCGAAACCGAGCGGCGCT 1 chrII:89570-90389 ( 60) ACGTCATATCTTCGATTTCGATTTCGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCMSSGGTTCGAWYCCSSKHKKGRGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 36576 bayes= 10.7932 E= 2.4e-344 97 -62 44 -473 -127 17 165 -273 17 -176 159 -473 -49 -149 -127 105 -1309 194 -249 -49 -9 144 -38 -315 -473 124 68 -49 -103 87 113 -215 -56 -1309 196 -315 -1309 -408 235 -1309 -473 -1309 -1309 169 -1309 -1309 -1309 171 -1309 236 -1309 -1309 -27 -1309 194 -1309 171 -1309 -1309 -1309 -41 -49 -8 55 -473 109 -1309 91 -1309 230 -1309 -273 -373 196 -1309 -49 -1309 113 121 -127 -56 73 128 -1309 -315 -62 144 2 -21 97 -1309 22 -127 -38 128 -27 -56 -76 117 -34 -73 -38 144 -115 22 -17 105 -215 -141 17 124 -56 -27 183 -1309 -241 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCMSSGGTTCGAWYCCSSKHKKGRGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 87 E= 2.4e-344 0.597701 0.126437 0.264368 0.011494 0.126437 0.218391 0.609195 0.045977 0.344828 0.057471 0.586207 0.011494 0.218391 0.068966 0.080460 0.632184 0.000000 0.747126 0.034483 0.218391 0.287356 0.528736 0.149425 0.034483 0.011494 0.459770 0.310345 0.218391 0.149425 0.356322 0.425287 0.068966 0.206897 0.000000 0.758621 0.034483 0.000000 0.011494 0.988506 0.000000 0.011494 0.000000 0.000000 0.988506 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.252874 0.000000 0.747126 0.000000 1.000000 0.000000 0.000000 0.000000 0.229885 0.137931 0.183908 0.448276 0.011494 0.413793 0.000000 0.574713 0.000000 0.954023 0.000000 0.045977 0.022989 0.758621 0.000000 0.218391 0.000000 0.425287 0.448276 0.126437 0.206897 0.321839 0.471264 0.000000 0.034483 0.126437 0.528736 0.310345 0.264368 0.379310 0.000000 0.356322 0.126437 0.149425 0.471264 0.252874 0.206897 0.114943 0.436782 0.241379 0.183908 0.149425 0.528736 0.137931 0.356322 0.172414 0.402299 0.068966 0.114943 0.218391 0.459770 0.206897 0.252874 0.689655 0.000000 0.057471 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCMSSGGTTCGAWYCCSSKHKKGRGC MEME-1 regular expression -------------------------------------------------------------------------------- [AG][GC][GA][TA][CT][CA][CGT][GC][GA]GTTC[GA]A[TA][TC]C[CT][GC][GCA][GT][CTA][GT][GTA]G[GA][GCT][CA] -------------------------------------------------------------------------------- Time 243.37 secs. ******************************************************************************** ******************************************************************************** MOTIF SSCYTWAMCMACTRGGCCAH MEME-2 width = 20 sites = 80 llr = 1086 E-value = 1.8e-144 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCYTWAMCMACTRGGCCAH MEME-2 Description -------------------------------------------------------------------------------- Simplified A 211:1365:3a::333::a4 pos.-specific C 44642115a6:8:22:a7:4 probability G 4422111::1:::457:::: matrix T :125653::::2a2:::3:2 bits 2.4 * * 2.1 * * 1.9 * * 1.7 * *** * * Relative 1.4 * *** **** Entropy 1.2 * *** **** (19.6 bits) 0.9 * *** **** 0.7 * * ****** ***** 0.5 **** ****** ****** 0.2 ******************** 0.0 -------------------- Multilevel CGCTTTACCCACTGGGCCAC consensus GC CCATA A AAA T A sequence A C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWAMCMACTRGGCCAH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrVI:191194-192029 + 27 1.97e-11 AGCAGGGCAT CGCCTTAACCACTCGGCCAC TGGGACAGAA chrIV:1150699-1151169 + 32 1.97e-11 TAGCAGGCAT CGCCTTAACCACTCGGCCAC TGGGACTGAA chrXIII:259013-259382 + 67 1.08e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCATAC chrXII:167783-168239 + 39 1.08e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCATAT chrIV:437556-438031 - 35 1.08e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCTTAC chrXIV:602084-602560 - 46 3.64e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCATTG chrXIV:569636-570148 + 73 3.64e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCAC chrV:443080-443380 + 70 3.64e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCAAAT chrIX:183311-183716 + 25 3.64e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCAGGA chrII:197233-197846 - 11 3.64e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCTTGA chrXV:353887-354333 + 28 1.92e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCAT AGAAGCAGTA chrXV:113581-113987 - 74 1.92e-09 AGTGTGG CGCCTTACCAACTTGGCCAT AGAAGCTAAA chrXIV:560590-560873 + 59 1.92e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCAT AGAAGCCCGT chrXIV:104621-105048 - 27 1.92e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCAT AGAAGCTGAG chrVIII:115941-116366 + 51 1.92e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCAT AGAAGCTCTA chrII:266195-266668 - 3 1.92e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCAT AG chrXV:228114-228570 - 45 7.99e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCTAAT chrXIV:632416-632856 - 19 7.99e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCACTT chrX:424265-424727 + 44 7.99e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCATCT chrIV:519657-519912 - 15 7.99e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCGTAA chrIII:127581-127906 - 29 7.99e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCATTT chrII:9370-9833 - 38 7.99e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCACGA chrXVI:856698-857170 - 24 1.10e-08 GCTAAGGGAG CGCGCTACCGACTACGCCAC ACGCCCGAAT chrXII:656841-657216 + 3 1.10e-08 AG CGCGCTACCGACTACGCCAC ACGCCCAATT chrXVI:768998-769504 + 76 2.04e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAA CAAGG chrXII:875162-875622 - 40 2.04e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAA CAAGGATGAG chrVII:115333-115744 - 6 2.04e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAA CAAGG chrXII:605141-605619 + 77 2.37e-08 ATAAGCACGA AGCTCTAACCACTGAGCTAC ACGA chrXI:490765-491277 - 3 3.63e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCAC GA chrX:233667-234167 - 78 3.63e-08 AGA CGCCGTGACCATTGGGCCAC GAGGAACAAG chrXVI:581819-582292 - 63 1.31e-07 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTCTT chrV:435634-436014 + 25 1.31e-07 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTCTT chrIX:300011-300524 + 58 1.31e-07 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTATT chrIII:151041-151589 + 66 1.31e-07 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTCTT chrVIII:358276-358799 + 57 1.48e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCTTAC chrVIII:237762-238158 + 4 1.48e-07 TGG CGCTCTCCCAACTGAGCTAA ATCCGCTTAC chrVII:440525-440995 + 72 1.48e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCATA chrXI:83984-84449 - 48 1.66e-07 TAAGTCTGCC GCATTAGACCACTCGGCCAA CCCTCCATAC chrX:378191-378571 - 35 3.21e-07 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCTATT chrVII:823340-823708 - 14 3.21e-07 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCACTC chrV:438489-438958 - 33 3.21e-07 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCTAAT chrXIV:442795-443266 - 32 3.94e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAA ACAACCACTT chrVII:205301-205764 - 45 3.94e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAA ACAACCACTT chrXV:281981-282430 - 15 4.36e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCGCTT chrXV:226400-226892 + 60 4.36e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTGAA chrVII:930869-931172 + 28 4.36e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTCAC chrXIII:837714-838206 - 24 4.82e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTCAA chrX:542723-543260 + 78 4.82e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGA chrX:353987-354475 - 69 4.82e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTGAT chrVI:167259-167662 - 33 4.82e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTCGT chrIV:488453-489193 + 72 4.82e-07 TAAAGGCGAC GTCTTGAACCACTGGACCAT TGGACCGGA chrIII:63-1033 + 49 4.82e-07 CCTCCAATTA CCCGTATCCAACTCCACTAC CGCTTACCCT chrII:326568-327099 + 57 4.82e-07 TAAAGGCGAC GTCTTGAACCACTGGACCAT TGGACCCGGA chrIV:1175564-1176106 - 50 8.50e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTAC TGAAGCTTTG chrIV:1256819-1257282 + 54 9.30e-07 GGGAAGCATG AATTCTAACCACTGAACCAC TTTCGCTAAG chrXIII:195957-196306 + 64 1.31e-06 CCCAAAGCGA GAATCATACCACTAGACCAC ACGCCCTTGT chrVI:101154-101551 - 80 1.31e-06 A GAATCATACCACTAGACCAC ACGCCCGAAT chrI:138962-139361 - 47 1.31e-06 CCCAAAGCGA GAATCATACCACTAGACCAC ACGCCCGTAC chrXIV:6616-7022 + 6 1.55e-06 TCGTT ACCCTGCCCCACTCAACCAT ACCACTCCCA chrVIII:556603-556920 - 45 1.55e-06 CCCACTCGTT ACCCTGCCCCACTCAACCAT ACCACTCCCA chrX:517656-518077 + 43 1.68e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCAC GGCGCTTAAC chrVII:1004047-1004438 - 30 1.68e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAA GGAGGCAAAC chrVII:661548-661974 - 44 1.68e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAA GGAGGCAAAT chrIII:149730-150195 - 14 1.68e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCAC GGCGCTCAAC chrII:642815-643253 + 69 2.48e-06 TTGCAATCTG CTGCGCTACCACTGCGCCAT ACGAGCTTTC chrXI:302696-303206 - 23 2.87e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCAC CGCTTCATCT chrX:415801-416229 + 46 2.87e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCAC CGCTTCAACT chrVII:878553-879107 + 10 2.87e-06 TGGAGTCGA AAGCTCTACCATTGAGCCAC CGCTTCATCT chrVII:287176-287705 + 40 2.87e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCAC CGCTTCATCT chrXVI:302647-304221 + 7 3.09e-06 ACCCAC GGTTTGACCAACTGGGCTGC TGCTTACGCT chrXIII:131604-132100 + 69 6.03e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCAC GCGAGCTAAA chrXI:162285-162732 + 75 6.03e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCAC GCGAGC chrX:374201-374853 + 75 6.03e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCAC GCGAGC chrXII:448528-448856 + 54 6.82e-06 CAAAACCGAA AGTGATAACCACTACACTAT AGGACCGGAA chrIV:802572-803029 + 27 6.82e-06 CAAAACCGAA AGTGATAACCACTACACTAT AGGACCGACA chrII:350599-351052 - 58 6.82e-06 CAAAACCGAA AGTGATAACCACTACACTAT AAAACCCTTT chrXV:110857-111207 + 26 7.25e-06 GGAAGGGTGG GATGATAACCACTACACTAA CCGCCCGGGT chrXIV:96002-96551 + 61 7.25e-06 GGAAGGGTGG GATGATAACCACTACACTAA CCGCCCATGT chrVII:779402-779909 - 17 7.25e-06 GGAAGGGTGG GATGATAACCACTACACTAA CCGCCCGGGG chrX:390560-392156 - 3 9.15e-06 TCTGTAGGCA CTTCTACCCCACAGGGCCAT GA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWAMCMACTRGGCCAH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVI:191194-192029 2e-11 26_[+2]_54 chrIV:1150699-1151169 2e-11 31_[+2]_49 chrXIII:259013-259382 1.1e-10 66_[+2]_14 chrXII:167783-168239 1.1e-10 38_[+2]_42 chrIV:437556-438031 1.1e-10 34_[-2]_46 chrXIV:602084-602560 3.6e-10 45_[-2]_35 chrXIV:569636-570148 3.6e-10 72_[+2]_8 chrV:443080-443380 3.6e-10 69_[+2]_11 chrIX:183311-183716 3.6e-10 24_[+2]_56 chrII:197233-197846 3.6e-10 10_[-2]_70 chrXV:353887-354333 1.9e-09 27_[+2]_53 chrXV:113581-113987 1.9e-09 73_[-2]_7 chrXIV:560590-560873 1.9e-09 58_[+2]_22 chrXIV:104621-105048 1.9e-09 26_[-2]_54 chrVIII:115941-116366 1.9e-09 50_[+2]_30 chrII:266195-266668 1.9e-09 2_[-2]_78 chrXV:228114-228570 8e-09 44_[-2]_36 chrXIV:632416-632856 8e-09 18_[-2]_62 chrX:424265-424727 8e-09 43_[+2]_37 chrIV:519657-519912 8e-09 14_[-2]_66 chrIII:127581-127906 8e-09 28_[-2]_52 chrII:9370-9833 8e-09 37_[-2]_43 chrXVI:856698-857170 1.1e-08 23_[-2]_57 chrXII:656841-657216 1.1e-08 2_[+2]_78 chrXVI:768998-769504 2e-08 75_[+2]_5 chrXII:875162-875622 2e-08 39_[-2]_41 chrVII:115333-115744 2e-08 5_[-2]_75 chrXII:605141-605619 2.4e-08 76_[+2]_4 chrXI:490765-491277 3.6e-08 2_[-2]_78 chrX:233667-234167 3.6e-08 77_[-2]_3 chrXVI:581819-582292 1.3e-07 62_[-2]_18 chrV:435634-436014 1.3e-07 24_[+2]_56 chrIX:300011-300524 1.3e-07 57_[+2]_23 chrIII:151041-151589 1.3e-07 65_[+2]_15 chrVIII:358276-358799 1.5e-07 56_[+2]_24 chrVIII:237762-238158 1.5e-07 3_[+2]_77 chrVII:440525-440995 1.5e-07 71_[+2]_9 chrXI:83984-84449 1.7e-07 47_[-2]_33 chrX:378191-378571 3.2e-07 34_[-2]_46 chrVII:823340-823708 3.2e-07 13_[-2]_67 chrV:438489-438958 3.2e-07 32_[-2]_48 chrXIV:442795-443266 3.9e-07 31_[-2]_49 chrVII:205301-205764 3.9e-07 44_[-2]_36 chrXV:281981-282430 4.4e-07 14_[-2]_66 chrXV:226400-226892 4.4e-07 59_[+2]_21 chrVII:930869-931172 4.4e-07 27_[+2]_53 chrXIII:837714-838206 4.8e-07 23_[-2]_57 chrX:542723-543260 4.8e-07 77_[+2]_3 chrX:353987-354475 4.8e-07 68_[-2]_12 chrVI:167259-167662 4.8e-07 32_[-2]_48 chrIV:488453-489193 4.8e-07 71_[+2]_9 chrIII:63-1033 4.8e-07 48_[+2]_32 chrII:326568-327099 4.8e-07 56_[+2]_24 chrIV:1175564-1176106 8.5e-07 49_[-2]_31 chrIV:1256819-1257282 9.3e-07 53_[+2]_27 chrXIII:195957-196306 1.3e-06 63_[+2]_17 chrVI:101154-101551 1.3e-06 79_[-2]_1 chrI:138962-139361 1.3e-06 46_[-2]_34 chrXIV:6616-7022 1.6e-06 5_[+2]_75 chrVIII:556603-556920 1.6e-06 44_[-2]_36 chrX:517656-518077 1.7e-06 42_[+2]_38 chrVII:1004047-1004438 1.7e-06 29_[-2]_51 chrVII:661548-661974 1.7e-06 43_[-2]_37 chrIII:149730-150195 1.7e-06 13_[-2]_67 chrII:642815-643253 2.5e-06 68_[+2]_12 chrXI:302696-303206 2.9e-06 22_[-2]_58 chrX:415801-416229 2.9e-06 45_[+2]_35 chrVII:878553-879107 2.9e-06 9_[+2]_71 chrVII:287176-287705 2.9e-06 39_[+2]_41 chrXVI:302647-304221 3.1e-06 6_[+2]_74 chrXIII:131604-132100 6e-06 68_[+2]_12 chrXI:162285-162732 6e-06 74_[+2]_6 chrX:374201-374853 6e-06 74_[+2]_6 chrXII:448528-448856 6.8e-06 53_[+2]_27 chrIV:802572-803029 6.8e-06 26_[+2]_54 chrII:350599-351052 6.8e-06 57_[-2]_23 chrXV:110857-111207 7.2e-06 25_[+2]_55 chrXIV:96002-96551 7.2e-06 60_[+2]_20 chrVII:779402-779909 7.2e-06 16_[-2]_64 chrX:390560-392156 9.1e-06 2_[-2]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWAMCMACTRGGCCAH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCYTWAMCMACTRGGCCAH width=20 seqs=80 chrVI:191194-192029 ( 27) CGCCTTAACCACTCGGCCAC 1 chrIV:1150699-1151169 ( 32) CGCCTTAACCACTCGGCCAC 1 chrXIII:259013-259382 ( 67) CGCCTTAACCACTCGGCCAA 1 chrXII:167783-168239 ( 39) CGCCTTAACCACTCGGCCAA 1 chrIV:437556-438031 ( 35) CGCCTTAACCACTCGGCCAA 1 chrXIV:602084-602560 ( 46) GCCTTAACCAACTGGGCCAA 1 chrXIV:569636-570148 ( 73) GCCTTAACCAACTGGGCCAA 1 chrV:443080-443380 ( 70) GCCTTAACCAACTGGGCCAA 1 chrIX:183311-183716 ( 25) GCCTTAACCAACTGGGCCAA 1 chrII:197233-197846 ( 11) GCCTTAACCAACTGGGCCAA 1 chrXV:353887-354333 ( 28) CGCCTTACCAACTTGGCCAT 1 chrXV:113581-113987 ( 74) CGCCTTACCAACTTGGCCAT 1 chrXIV:560590-560873 ( 59) CGCCTTACCAACTTGGCCAT 1 chrXIV:104621-105048 ( 27) CGCCTTACCAACTTGGCCAT 1 chrVIII:115941-116366 ( 51) CGCCTTACCAACTTGGCCAT 1 chrII:266195-266668 ( 3) CGCCTTACCAACTTGGCCAT 1 chrXV:228114-228570 ( 45) GCCTTAACCAACTTGGCCAT 1 chrXIV:632416-632856 ( 19) GCCTTAACCAACTTGGCCAT 1 chrX:424265-424727 ( 44) GCCTTAGACCACTCGGCCAA 1 chrIV:519657-519912 ( 15) GCCTTAGACCACTCGGCCAA 1 chrIII:127581-127906 ( 29) GCCTTAACCAACTTGGCCAT 1 chrII:9370-9833 ( 38) GCCTTAGACCACTCGGCCAA 1 chrXVI:856698-857170 ( 24) CGCGCTACCGACTACGCCAC 1 chrXII:656841-657216 ( 3) CGCGCTACCGACTACGCCAC 1 chrXVI:768998-769504 ( 76) CGCTCTACCAACTGAGCTAA 1 chrXII:875162-875622 ( 40) CGCTCTACCAACTGAGCTAA 1 chrVII:115333-115744 ( 6) CGCTCTACCAACTGAGCTAA 1 chrXII:605141-605619 ( 77) AGCTCTAACCACTGAGCTAC 1 chrXI:490765-491277 ( 3) CGCCGTGACCATTGGGCCAC 1 chrX:233667-234167 ( 78) CGCCGTGACCATTGGGCCAC 1 chrXVI:581819-582292 ( 63) CGCGCTACCGATTGCGCCAA 1 chrV:435634-436014 ( 25) CGCGCTACCGATTGCGCCAA 1 chrIX:300011-300524 ( 58) CGCGCTACCGATTGCGCCAA 1 chrIII:151041-151589 ( 66) CGCGCTACCGATTGCGCCAA 1 chrVIII:358276-358799 ( 57) CGCTCTCCCAACTGAGCTAA 1 chrVIII:237762-238158 ( 4) CGCTCTCCCAACTGAGCTAA 1 chrVII:440525-440995 ( 72) CGCTCTCCCAACTGAGCTAA 1 chrXI:83984-84449 ( 48) GCATTAGACCACTCGGCCAA 1 chrX:378191-378571 ( 35) GCCATAACCGACTAGACCAC 1 chrVII:823340-823708 ( 14) GCCATAACCGACTAGACCAC 1 chrV:438489-438958 ( 33) GCCATAACCGACTAGACCAC 1 chrXIV:442795-443266 ( 32) GCCTTAGACCGCTCGGCCAA 1 chrVII:205301-205764 ( 45) GCCTTAGACCGCTCGGCCAA 1 chrXV:281981-282430 ( 15) GGATTTTACCACTAAACCAC 1 chrXV:226400-226892 ( 60) GGATTTTACCACTAAACCAC 1 chrVII:930869-931172 ( 28) GGATTTTACCACTAAACCAC 1 chrXIII:837714-838206 ( 24) CCTTAAACCAACTTGGCTAC 1 chrX:542723-543260 ( 78) CCTTAAACCAACTTGGCTAC 1 chrX:353987-354475 ( 69) CCTTAAACCAACTTGGCTAC 1 chrVI:167259-167662 ( 33) CCTTAAACCAACTTGGCTAC 1 chrIV:488453-489193 ( 72) GTCTTGAACCACTGGACCAT 1 chrIII:63-1033 ( 49) CCCGTATCCAACTCCACTAC 1 chrII:326568-327099 ( 57) GTCTTGAACCACTGGACCAT 1 chrIV:1175564-1176106 ( 50) CGCTCTTCCTACTGAGCTAC 1 chrIV:1256819-1257282 ( 54) AATTCTAACCACTGAACCAC 1 chrXIII:195957-196306 ( 64) GAATCATACCACTAGACCAC 1 chrVI:101154-101551 ( 80) GAATCATACCACTAGACCAC 1 chrI:138962-139361 ( 47) GAATCATACCACTAGACCAC 1 chrXIV:6616-7022 ( 6) ACCCTGCCCCACTCAACCAT 1 chrVIII:556603-556920 ( 45) ACCCTGCCCCACTCAACCAT 1 chrX:517656-518077 ( 43) GCGCGCTTCCACTGCGCCAC 1 chrVII:1004047-1004438 ( 30) ACGCTCTACCACTAAGCTAA 1 chrVII:661548-661974 ( 44) ACGCTCTACCACTAAGCTAA 1 chrIII:149730-150195 ( 14) GCGCGCTTCCACTGCGCCAC 1 chrII:642815-643253 ( 69) CTGCGCTACCACTGCGCCAT 1 chrXI:302696-303206 ( 23) AAGCTCTACCATTGAGCCAC 1 chrX:415801-416229 ( 46) AAGCTCTACCATTGAGCCAC 1 chrVII:878553-879107 ( 10) AAGCTCTACCATTGAGCCAC 1 chrVII:287176-287705 ( 40) AAGCTCTACCATTGAGCCAC 1 chrXVI:302647-304221 ( 7) GGTTTGACCAACTGGGCTGC 1 chrXIII:131604-132100 ( 69) ACGCGTTGCCATTACGCCAC 1 chrXI:162285-162732 ( 75) ACGCGTTGCCATTACGCCAC 1 chrX:374201-374853 ( 75) ACGCGTTGCCATTACGCCAC 1 chrXII:448528-448856 ( 54) AGTGATAACCACTACACTAT 1 chrIV:802572-803029 ( 27) AGTGATAACCACTACACTAT 1 chrII:350599-351052 ( 58) AGTGATAACCACTACACTAT 1 chrXV:110857-111207 ( 26) GATGATAACCACTACACTAA 1 chrXIV:96002-96551 ( 61) GATGATAACCACTACACTAA 1 chrVII:779402-779909 ( 17) GATGATAACCACTACACTAA 1 chrX:390560-392156 ( 3) CTTCTACCCCACAGGGCCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWAMCMACTRGGCCAH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 41148 bayes= 8.43685 E= 1.8e-144 -61 109 100 -1297 -115 100 113 -261 -180 163 -37 -91 -303 85 -26 56 -129 21 -96 85 9 -79 -164 71 91 -137 -96 -29 56 133 -237 -361 -1297 236 -1297 -1297 9 150 -79 -461 167 -1297 -296 -1297 -1297 211 -1297 -91 -461 -1297 -1297 169 -15 -15 100 -91 -29 29 140 -1297 -22 -1297 192 -1297 -1297 236 -1297 -1297 -1297 190 -1297 -15 169 -1297 -396 -1297 25 109 -1297 -44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWAMCMACTRGGCCAH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 80 E= 1.8e-144 0.200000 0.412500 0.387500 0.000000 0.137500 0.387500 0.425000 0.050000 0.087500 0.600000 0.150000 0.162500 0.037500 0.350000 0.162500 0.450000 0.125000 0.225000 0.100000 0.550000 0.325000 0.112500 0.062500 0.500000 0.575000 0.075000 0.100000 0.250000 0.450000 0.487500 0.037500 0.025000 0.000000 1.000000 0.000000 0.000000 0.325000 0.550000 0.112500 0.012500 0.975000 0.000000 0.025000 0.000000 0.000000 0.837500 0.000000 0.162500 0.012500 0.000000 0.000000 0.987500 0.275000 0.175000 0.387500 0.162500 0.250000 0.237500 0.512500 0.000000 0.262500 0.000000 0.737500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.725000 0.000000 0.275000 0.987500 0.000000 0.012500 0.000000 0.362500 0.412500 0.000000 0.225000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYTWAMCMACTRGGCCAH MEME-2 regular expression -------------------------------------------------------------------------------- [CGA][GC]C[TC][TC][TA][AT][CA]C[CA]ACT[GA][GAC][GA]C[CT]A[CAT] -------------------------------------------------------------------------------- Time 465.14 secs. ******************************************************************************** ******************************************************************************** MOTIF RRTGTAYGGRTGTW MEME-3 width = 14 sites = 73 llr = 827 E-value = 1.5e-068 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRTGTAYGGRTGTW MEME-3 Description -------------------------------------------------------------------------------- Simplified A 36:::81::3::15 pos.-specific C ::::314:::::21 probability G 541a:2:aa7:812 matrix T 2:9:7:5:::9263 bits 2.4 * * 2.1 * ** 1.9 * ** 1.7 * ** Relative 1.4 ** ** ** Entropy 1.2 ** ***** (16.4 bits) 0.9 *** ***** 0.7 *********** 0.5 ************* 0.2 ************** 0.0 -------------- Multilevel GATGTATGGGTGTA consensus AG C C A CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGTAYGGRTGTW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------- chrXV:639113-639464 + 79 4.25e-09 CTGTATGTGT GGTGTACGGGTGTA AAAGTAGT chrXII:932053-932539 + 29 5.45e-08 CAGATGTACG GATGTACGGATGTA TACTATGTAA chrX:157380-157918 + 6 6.93e-08 TATAA AGTGTACGGGTGTA TACACATTGT chrIV:1355710-1356029 + 20 1.11e-07 AAATACTATA AATGTATGGGTGTA ATTTTAACCG chrVIII:125873-126331 - 49 1.34e-07 TAAAGATGTA GGTGTACGGATGCA TTAACGTCTT chrIII:58658-59024 - 79 1.34e-07 TCAGAAAT GGTGCACGGATGTA CCCACGCAAT chrI:81878-82349 + 47 1.34e-07 ATCTAGCGGA GGTGCACGGATGTA CCAACAGTTT chrVII:555117-555912 - 45 1.71e-07 AAACACTTTT AATGCACGGGTGTA AAAGGGATGT chrXII:11198-11503 - 12 2.55e-07 GTGTGGTGTG GGTGTGTGGGTGTG GGTGTGTGGG chrXI:666412-666789 + 62 2.55e-07 TAGGGTTGTG GGTGTGTGGGTGTG GTGTGGGTGT chrVI:95419-95941 + 6 2.55e-07 AATCC GGTGTGTGGGTGCA TGACTGATTG chrVI:4602-4786 - 60 2.55e-07 TGTGGGTGTG GGTGTGTGGGTGTG GTGTGTGTGG chrIV:11-338 - 12 2.55e-07 GGTAGTGTGT GGTGTGTGGGTGTG GGTGTGGTGT chrII:415510-415894 + 31 2.55e-07 TGGATGACAA AATGCATGGGTGTA AAAAAGGAAA chrVIII:382855-383363 + 42 2.94e-07 TTATTTTCAT GATGTATGGGTGTC TCGGATGTTC chrXV:79709-80148 + 70 3.21e-07 ACTTATTTAA TATGTACGGGTGTT TACATGGAGT chrIX:68180-68505 - 57 3.92e-07 ACATCTTAGT AATGTACGGATGTA ATAAACTCAA chrXII:241610-242032 - 35 5.90e-07 TTACATTTTA TATGTACGGATGTA AAAAGGGAAA chrXVI:279974-280240 - 56 6.33e-07 GGAATTGTGA GGTGCACGGATGCG GACTTCTCCT chrVIII:148924-149304 + 18 6.33e-07 ATAATTCAAT GGTGCATGGGTGAA AATGTATGGG chrV:69099-69318 + 22 6.33e-07 GAAGCTTTGT GGGGTACGGGTGCA TGCTCGGCTT chrXV:1027878-1029863 + 87 7.44e-07 AAACAAATCA AATGTACGGATGCA chrII:44932-45396 - 55 7.44e-07 ACATACATAG AATGTACGGATGCA TGATTGTCTC chrXVI:378639-379011 + 65 8.37e-07 TGAGAACTCG AATGTACGGATGTT TTCTCTGAAT chrX:607878-608152 - 30 8.37e-07 GGTTAAATAG GATGTATGGATGGA GGGTTGGCAT chrVIII:505793-506221 + 44 9.37e-07 GTCTGGGTGA AATGTATGGATGCA TAATTGTCTC chrV:110341-111102 - 6 9.37e-07 TGTCTATTGA GGTGTCTGGGTGTG TTTGT chrIII:163430-163906 + 29 9.37e-07 GCCGCGGTTG GGTGCGTGGGTGCG GTAATTTAAC chrXV:901427-901676 + 39 1.08e-06 GGAAACGTAA AATGTACGGGTGAA CAGTCCCGAA chrVII:371162-371550 - 48 1.08e-06 GGCGGTGTGA GGTGCATGGGTGCC GGTATTTTTT chrXIII:500859-501138 - 27 1.19e-06 GCCTTATGAC TATGTACGGATGTT AGGCCGTCTT chrXII:818500-819499 - 49 1.19e-06 CAACTATCAA TATGTACGGATGTT TAAAAGGTAT chrXII:1028176-1028609 - 55 1.35e-06 CATACATTTT GGTGCATGGGTGAT ATTTTGTCTT chrXVI:188581-188955 - 71 1.52e-06 CATAGTAACC GATGCATGGGTTTT AAAAGTCACG chrXVI:731881-732317 - 54 1.66e-06 AACCATCCTA AAGGTATGGGTGTA CTGACGATGC chrVII:365773-366658 + 72 1.66e-06 GATTTATAAA TATGTGTGGGTGTT TATATGATCA chrXIV:330734-331164 - 50 1.86e-06 TTTTACTTTA GATGTAAGGATGTA AGATATCTGA chrIX:254207-254583 + 13 1.86e-06 CGGCAATTAG AATGTGTGGGTGCG GAAGCTCGCC chrIV:358026-358521 + 26 1.86e-06 CTTGTCAGAT AATGTATGGGTGGT GTGTACACCA chrXV:1025713-1026085 - 26 2.07e-06 AATTACACGT GATGAATGGGTGTT CAGCATATGT chrXV:1004022-1004424 + 74 2.07e-06 GTATGTTATG GGTGCAAGGGTGTT TTTTTTTTTT chrV:423065-423529 - 24 2.07e-06 GGGTGTAGAA GGTGTACGGAGGTA AATATGCAGC chrIV:321613-322001 - 41 2.07e-06 AATAAAGATT GGTGTACGGAGGTA AAGGTATGAA chrXI:382161-382481 - 33 2.30e-06 TGTTGGGTGT GATGTCCGGATGCA ACAGCAGCAA chrIV:340642-342230 + 57 2.30e-06 TGGGTGTTAA AATGTACGGATGGA AAAGTAGACT chrXIII:731990-732531 + 12 2.56e-06 GCACATCGCG CATGTGTGGGTGTA TATGCCCTTT chrXV:505020-505541 - 63 3.40e-06 TAAGGTTCAT TGTGTATGGGTTTG AAATGAATGA chrV:270016-270918 - 69 3.40e-06 CATTTAGTGG TATGTATGGGTGAT AAATTTTTTT chrVII:1000311-1000605 - 49 3.74e-06 CAAATATGCA GGTGTTTGGGTGCT ATCTTAGTGG chrVII:277012-277453 - 44 3.74e-06 CCATAGAGCG GGTGTATGGGTCTA GCTTAAATAC chrIV:1359371-1359948 - 1 3.74e-06 TTTCAGATAG CATGCATGGGTGCG chrV:53488-54015 - 17 4.86e-06 GAACACCAAA TATGTGTGGGTGTC AAACAAAGAG chrII:165055-165473 - 42 4.86e-06 GCTCTAACGC GGTGTATGGGTTAG ATTCGTAATA chrXVI:406177-406616 - 24 6.39e-06 TGGAGGTGGA AAGGTACGGATGTT AAACTTCATA chrXV:216273-216709 - 9 7.53e-06 GGAAGGCGCG GGTGCTCGGATGTT CCGATAAA chrXI:618744-619367 + 6 8.21e-06 TGTTA GAGGCACGGATGGA AATAGTATTT chrXV:866333-867245 + 17 8.91e-06 GCATTCTGGG TTTGTATGGGTGTT ACACCGGTTT chrXI:67728-68061 - 68 8.91e-06 AATTTGATGC GGTGCACGGATTTC AGCACGGGTT chrXV:94386-94813 - 85 1.04e-05 AT ATTGCATGGGTGTT AATTCTATTT chrXI:158163-158665 - 35 1.04e-05 TTATTTCCAG TGTGCACGGGTTGA AATAAATGAA chrX:651246-651607 - 69 1.04e-05 TTGAGACAAA TATGTATGGGTTAA GAATAATTAT chrVIII:296843-297271 - 49 1.04e-05 AGCATGCAGT GATGTACTGGTGGA CGAAATTGTG chrIX:99597-100090 + 17 1.21e-05 TTCATGAATA AATGTACTGGTGTT ACATGGTGTA chrX:617707-618252 + 61 1.52e-05 GATATCTTCG GATGCAAGGGTTCG AATCCCTTAG chrII:604030-604539 - 50 1.52e-05 CAGATGTGTA AATGTACGGATTAA ATCGTCGCAG chrXV:978771-979173 + 16 1.64e-05 TATACACAAG GATGAATGGGTTCT ACGACACCGC chrXV:968092-968537 + 5 1.64e-05 GTGG GGTGCGTGGGCGTG CGCAGCTCGA chrV:354710-355347 + 51 1.75e-05 TCATACAGTG TATGTATGGGGTTA GGAGCCACCT chrII:167813-168246 - 55 2.02e-05 TGGTGAAAAA TATGTCTGGGTTTT AAAACACTGT chrXVI:699588-700651 - 64 2.16e-05 GATTGGGTGT GATGTAAGGATTCG CGGTCCTCGA chrIV:1450543-1451620 + 52 2.47e-05 AAAATACAAA TATGTACAGGTGTT AATGTCTAAA chrXVI:520037-520557 + 86 2.82e-05 TGCATGCCTG CAGGTCTGGGTGTA C chrIV:490949-491287 - 62 3.01e-05 TTTTTTCCTG AATGATTGGGTGTA ATAAAATAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGTAYGGRTGTW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:639113-639464 4.2e-09 78_[+3]_8 chrXII:932053-932539 5.5e-08 28_[+3]_58 chrX:157380-157918 6.9e-08 5_[+3]_81 chrIV:1355710-1356029 1.1e-07 19_[+3]_67 chrVIII:125873-126331 1.3e-07 48_[-3]_38 chrIII:58658-59024 1.3e-07 78_[-3]_8 chrI:81878-82349 1.3e-07 46_[+3]_40 chrVII:555117-555912 1.7e-07 44_[-3]_42 chrXII:11198-11503 2.6e-07 11_[-3]_75 chrXI:666412-666789 2.6e-07 61_[+3]_25 chrVI:95419-95941 2.6e-07 5_[+3]_81 chrVI:4602-4786 2.6e-07 59_[-3]_27 chrIV:11-338 2.6e-07 11_[-3]_75 chrII:415510-415894 2.6e-07 30_[+3]_56 chrVIII:382855-383363 2.9e-07 41_[+3]_45 chrXV:79709-80148 3.2e-07 69_[+3]_17 chrIX:68180-68505 3.9e-07 56_[-3]_30 chrXII:241610-242032 5.9e-07 34_[-3]_52 chrXVI:279974-280240 6.3e-07 55_[-3]_31 chrVIII:148924-149304 6.3e-07 17_[+3]_69 chrV:69099-69318 6.3e-07 21_[+3]_65 chrXV:1027878-1029863 7.4e-07 86_[+3] chrII:44932-45396 7.4e-07 54_[-3]_32 chrXVI:378639-379011 8.4e-07 64_[+3]_22 chrX:607878-608152 8.4e-07 29_[-3]_57 chrVIII:505793-506221 9.4e-07 43_[+3]_43 chrV:110341-111102 9.4e-07 5_[-3]_81 chrIII:163430-163906 9.4e-07 28_[+3]_58 chrXV:901427-901676 1.1e-06 38_[+3]_48 chrVII:371162-371550 1.1e-06 47_[-3]_39 chrXIII:500859-501138 1.2e-06 26_[-3]_60 chrXII:818500-819499 1.2e-06 48_[-3]_38 chrXII:1028176-1028609 1.4e-06 54_[-3]_32 chrXVI:188581-188955 1.5e-06 70_[-3]_16 chrXVI:731881-732317 1.7e-06 53_[-3]_33 chrVII:365773-366658 1.7e-06 71_[+3]_15 chrXIV:330734-331164 1.9e-06 49_[-3]_37 chrIX:254207-254583 1.9e-06 12_[+3]_74 chrIV:358026-358521 1.9e-06 25_[+3]_61 chrXV:1025713-1026085 2.1e-06 25_[-3]_61 chrXV:1004022-1004424 2.1e-06 73_[+3]_13 chrV:423065-423529 2.1e-06 23_[-3]_63 chrIV:321613-322001 2.1e-06 40_[-3]_46 chrXI:382161-382481 2.3e-06 32_[-3]_54 chrIV:340642-342230 2.3e-06 56_[+3]_30 chrXIII:731990-732531 2.6e-06 11_[+3]_75 chrXV:505020-505541 3.4e-06 62_[-3]_24 chrV:270016-270918 3.4e-06 68_[-3]_18 chrVII:1000311-1000605 3.7e-06 48_[-3]_38 chrVII:277012-277453 3.7e-06 43_[-3]_43 chrIV:1359371-1359948 3.7e-06 [-3]_86 chrV:53488-54015 4.9e-06 16_[-3]_70 chrII:165055-165473 4.9e-06 41_[-3]_45 chrXVI:406177-406616 6.4e-06 23_[-3]_63 chrXV:216273-216709 7.5e-06 8_[-3]_78 chrXI:618744-619367 8.2e-06 5_[+3]_81 chrXV:866333-867245 8.9e-06 16_[+3]_70 chrXI:67728-68061 8.9e-06 67_[-3]_19 chrXV:94386-94813 1e-05 84_[-3]_2 chrXI:158163-158665 1e-05 34_[-3]_52 chrX:651246-651607 1e-05 68_[-3]_18 chrVIII:296843-297271 1e-05 48_[-3]_38 chrIX:99597-100090 1.2e-05 16_[+3]_70 chrX:617707-618252 1.5e-05 60_[+3]_26 chrII:604030-604539 1.5e-05 49_[-3]_37 chrXV:978771-979173 1.6e-05 15_[+3]_71 chrXV:968092-968537 1.6e-05 4_[+3]_82 chrV:354710-355347 1.8e-05 50_[+3]_36 chrII:167813-168246 2e-05 54_[-3]_32 chrXVI:699588-700651 2.2e-05 63_[-3]_23 chrIV:1450543-1451620 2.5e-05 51_[+3]_35 chrXVI:520037-520557 2.8e-05 85_[+3]_1 chrIV:490949-491287 3e-05 61_[-3]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGTAYGGRTGTW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRTGTAYGGRTGTW width=14 seqs=73 chrXV:639113-639464 ( 79) GGTGTACGGGTGTA 1 chrXII:932053-932539 ( 29) GATGTACGGATGTA 1 chrX:157380-157918 ( 6) AGTGTACGGGTGTA 1 chrIV:1355710-1356029 ( 20) AATGTATGGGTGTA 1 chrVIII:125873-126331 ( 49) GGTGTACGGATGCA 1 chrIII:58658-59024 ( 79) GGTGCACGGATGTA 1 chrI:81878-82349 ( 47) GGTGCACGGATGTA 1 chrVII:555117-555912 ( 45) AATGCACGGGTGTA 1 chrXII:11198-11503 ( 12) GGTGTGTGGGTGTG 1 chrXI:666412-666789 ( 62) GGTGTGTGGGTGTG 1 chrVI:95419-95941 ( 6) GGTGTGTGGGTGCA 1 chrVI:4602-4786 ( 60) GGTGTGTGGGTGTG 1 chrIV:11-338 ( 12) GGTGTGTGGGTGTG 1 chrII:415510-415894 ( 31) AATGCATGGGTGTA 1 chrVIII:382855-383363 ( 42) GATGTATGGGTGTC 1 chrXV:79709-80148 ( 70) TATGTACGGGTGTT 1 chrIX:68180-68505 ( 57) AATGTACGGATGTA 1 chrXII:241610-242032 ( 35) TATGTACGGATGTA 1 chrXVI:279974-280240 ( 56) GGTGCACGGATGCG 1 chrVIII:148924-149304 ( 18) GGTGCATGGGTGAA 1 chrV:69099-69318 ( 22) GGGGTACGGGTGCA 1 chrXV:1027878-1029863 ( 87) AATGTACGGATGCA 1 chrII:44932-45396 ( 55) AATGTACGGATGCA 1 chrXVI:378639-379011 ( 65) AATGTACGGATGTT 1 chrX:607878-608152 ( 30) GATGTATGGATGGA 1 chrVIII:505793-506221 ( 44) AATGTATGGATGCA 1 chrV:110341-111102 ( 6) GGTGTCTGGGTGTG 1 chrIII:163430-163906 ( 29) GGTGCGTGGGTGCG 1 chrXV:901427-901676 ( 39) AATGTACGGGTGAA 1 chrVII:371162-371550 ( 48) GGTGCATGGGTGCC 1 chrXIII:500859-501138 ( 27) TATGTACGGATGTT 1 chrXII:818500-819499 ( 49) TATGTACGGATGTT 1 chrXII:1028176-1028609 ( 55) GGTGCATGGGTGAT 1 chrXVI:188581-188955 ( 71) GATGCATGGGTTTT 1 chrXVI:731881-732317 ( 54) AAGGTATGGGTGTA 1 chrVII:365773-366658 ( 72) TATGTGTGGGTGTT 1 chrXIV:330734-331164 ( 50) GATGTAAGGATGTA 1 chrIX:254207-254583 ( 13) AATGTGTGGGTGCG 1 chrIV:358026-358521 ( 26) AATGTATGGGTGGT 1 chrXV:1025713-1026085 ( 26) GATGAATGGGTGTT 1 chrXV:1004022-1004424 ( 74) GGTGCAAGGGTGTT 1 chrV:423065-423529 ( 24) GGTGTACGGAGGTA 1 chrIV:321613-322001 ( 41) GGTGTACGGAGGTA 1 chrXI:382161-382481 ( 33) GATGTCCGGATGCA 1 chrIV:340642-342230 ( 57) AATGTACGGATGGA 1 chrXIII:731990-732531 ( 12) CATGTGTGGGTGTA 1 chrXV:505020-505541 ( 63) TGTGTATGGGTTTG 1 chrV:270016-270918 ( 69) TATGTATGGGTGAT 1 chrVII:1000311-1000605 ( 49) GGTGTTTGGGTGCT 1 chrVII:277012-277453 ( 44) GGTGTATGGGTCTA 1 chrIV:1359371-1359948 ( 1) CATGCATGGGTGCG 1 chrV:53488-54015 ( 17) TATGTGTGGGTGTC 1 chrII:165055-165473 ( 42) GGTGTATGGGTTAG 1 chrXVI:406177-406616 ( 24) AAGGTACGGATGTT 1 chrXV:216273-216709 ( 9) GGTGCTCGGATGTT 1 chrXI:618744-619367 ( 6) GAGGCACGGATGGA 1 chrXV:866333-867245 ( 17) TTTGTATGGGTGTT 1 chrXI:67728-68061 ( 68) GGTGCACGGATTTC 1 chrXV:94386-94813 ( 85) ATTGCATGGGTGTT 1 chrXI:158163-158665 ( 35) TGTGCACGGGTTGA 1 chrX:651246-651607 ( 69) TATGTATGGGTTAA 1 chrVIII:296843-297271 ( 49) GATGTACTGGTGGA 1 chrIX:99597-100090 ( 17) AATGTACTGGTGTT 1 chrX:617707-618252 ( 61) GATGCAAGGGTTCG 1 chrII:604030-604539 ( 50) AATGTACGGATTAA 1 chrXV:978771-979173 ( 16) GATGAATGGGTTCT 1 chrXV:968092-968537 ( 5) GGTGCGTGGGCGTG 1 chrV:354710-355347 ( 51) TATGTATGGGGTTA 1 chrII:167813-168246 ( 55) TATGTCTGGGTTTT 1 chrXVI:699588-700651 ( 64) GATGTAAGGATTCG 1 chrIV:1450543-1451620 ( 52) TATGTACAGGTGTT 1 chrXVI:520037-520557 ( 86) CAGGTCTGGGTGTA 1 chrIV:490949-491287 ( 62) AATGATTGGGTGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGTAYGGRTGTW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 44196 bayes= 10.1012 E= 1.5e-068 -23 -224 138 -67 95 -1283 98 -348 -1283 -1283 -150 161 -1283 -1283 236 -1283 -289 42 -1283 119 130 -183 -37 -289 -248 113 -1283 77 -448 -1283 230 -348 -1283 -1283 236 -1283 16 -1283 176 -1283 -1283 -382 -224 163 -1283 -382 208 -89 -167 17 -124 98 65 -183 -2 -16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGTAYGGRTGTW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 73 E= 1.5e-068 0.260274 0.041096 0.506849 0.191781 0.589041 0.000000 0.383562 0.027397 0.000000 0.000000 0.068493 0.931507 0.000000 0.000000 1.000000 0.000000 0.041096 0.260274 0.000000 0.698630 0.753425 0.054795 0.150685 0.041096 0.054795 0.424658 0.000000 0.520548 0.013699 0.000000 0.958904 0.027397 0.000000 0.000000 1.000000 0.000000 0.342466 0.000000 0.657534 0.000000 0.000000 0.013699 0.041096 0.945205 0.000000 0.013699 0.821918 0.164384 0.095890 0.219178 0.082192 0.602740 0.479452 0.054795 0.191781 0.273973 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGTAYGGRTGTW MEME-3 regular expression -------------------------------------------------------------------------------- [GA][AG]TG[TC]A[TC]GG[GA]TG[TC][AT] -------------------------------------------------------------------------------- Time 672.90 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71784-73279 2.98e-02 100 chrI:73536-73702 5.39e-01 100 chrI:81878-82349 1.43e-04 46_[+3(1.34e-07)]_40 chrI:138962-139361 3.08e-04 46_[-2(1.31e-06)]_34 chrI:166168-166587 8.61e-01 100 chrI:180928-181522 5.29e-02 49_[+1(8.43e-05)]_22 chrI:182197-183173 7.57e-01 100 chrII:9370-9833 4.30e-05 37_[-2(7.99e-09)]_43 chrII:36235-36808 7.66e-01 100 chrII:44932-45396 2.75e-03 54_[-3(7.44e-07)]_5_[+3(4.86e-06)]_\ 13 chrII:45986-46374 8.23e-02 100 chrII:59567-60529 1.35e-01 100 chrII:60709-61283 3.17e-01 100 chrII:89570-90389 2.06e-02 59_[-1(6.93e-06)]_12 chrII:165055-165473 3.77e-03 41_[-3(4.86e-06)]_45 chrII:167813-168246 1.71e-02 54_[-3(2.02e-05)]_3_[-3(4.92e-05)]_\ 15 chrII:180993-181701 6.09e-01 100 chrII:197233-197846 6.43e-14 10_[-2(3.64e-10)]_18_[+1(1.20e-11)]_\ 23 chrII:226969-227354 5.80e-04 15_[+1(1.05e-07)]_56 chrII:266195-266668 5.15e-12 2_[-2(1.92e-09)]_17_[+1(3.69e-10)]_\ 32 chrII:326568-327099 4.11e-11 9_[-1(3.29e-11)]_18_[+2(4.82e-07)]_\ 24 chrII:332250-332995 4.41e-01 100 chrII:347392-347941 1.60e-04 37_[-1(5.96e-08)]_34 chrII:350599-351052 5.03e-05 57_[-2(6.82e-06)]_23 chrII:405678-406270 5.51e-02 41_[-2(2.36e-05)]_39 chrII:415510-415894 1.51e-03 14_[+3(5.84e-05)]_2_[+3(2.55e-07)]_\ 56 chrII:476847-477737 1.76e-01 100 chrII:592813-593775 5.27e-01 100 chrII:604030-604539 5.89e-03 49_[-3(1.52e-05)]_2_[-3(3.63e-05)]_\ 21 chrII:604709-606314 6.86e-01 100 chrII:612262-613906 2.17e-01 100 chrII:642815-643253 1.24e-07 23_[-1(1.33e-08)]_16_[+2(2.48e-06)]_\ 12 chrII:644814-645427 3.62e-01 100 chrII:680064-682457 2.33e-01 100 chrIII:63-1033 4.42e-04 48_[+2(4.82e-07)]_32 chrIII:30582-31172 9.69e-01 100 chrIII:58658-59024 8.08e-04 78_[-3(1.34e-07)]_8 chrIII:82392-82689 3.05e-01 100 chrIII:90855-91159 1.35e-01 100 chrIII:123199-123818 7.57e-01 100 chrIII:127581-127906 2.48e-10 28_[-2(7.99e-09)]_18_[+1(6.02e-09)]_\ 5 chrIII:142612-142979 2.57e-03 [+2(4.36e-07)]_80 chrIII:149730-150195 2.15e-06 13_[-2(1.68e-06)]_16_[+1(4.69e-07)]_\ 22 chrIII:151041-151589 4.91e-12 19_[-1(2.16e-11)]_17_[+2(1.31e-07)]_\ 15 chrIII:163430-163906 2.29e-03 28_[+3(9.37e-07)]_16_[+3(2.82e-05)]_\ 28 chrIII:168025-168545 2.34e-07 66_[-1(8.89e-12)]_5 chrIII:177161-178766 3.69e-01 100 chrIII:227747-228441 5.00e-01 100 chrIII:295318-296032 9.50e-01 100 chrIII:315637-316598 3.04e-01 100 chrIV:11-338 2.79e-04 11_[-3(2.55e-07)]_75 chrIV:83427-83826 8.19e-09 12_[+1(2.46e-13)]_59 chrIV:117147-117727 6.46e-01 100 chrIV:118432-118713 7.61e-01 100 chrIV:129914-131024 4.34e-01 100 chrIV:216600-217653 2.24e-01 100 chrIV:221024-223138 1.28e-01 79_[+3(8.97e-05)]_7 chrIV:229423-230730 8.91e-01 100 chrIV:307941-308626 6.66e-01 100 chrIV:321613-322001 2.80e-03 40_[-3(2.07e-06)]_12_[-3(1.52e-05)]_\ 20 chrIV:340642-342230 7.32e-03 56_[+3(2.30e-06)]_30 chrIV:358026-358521 9.74e-03 25_[+3(1.86e-06)]_61 chrIV:359321-359780 1.04e-01 100 chrIV:386891-387145 2.58e-01 100 chrIV:410186-410818 3.41e-01 100 chrIV:411218-412973 4.82e-01 100 chrIV:434054-434874 8.06e-01 100 chrIV:437556-438031 1.67e-06 34_[-2(1.08e-10)]_46 chrIV:488453-489193 4.11e-11 24_[-1(3.29e-11)]_18_[+2(4.82e-07)]_\ 9 chrIV:490949-491287 6.42e-02 61_[-3(3.01e-05)]_25 chrIV:519657-519912 1.73e-09 14_[-2(7.99e-09)]_25_[-1(5.96e-08)]_\ 12 chrIV:520718-521414 1.83e-01 100 chrIV:538831-539256 1.79e-01 100 chrIV:568691-569387 6.50e-05 16_[+1(8.64e-09)]_55 chrIV:578773-580660 1.93e-01 100 chrIV:619713-620240 8.44e-06 43_[-1(6.52e-10)]_28 chrIV:644908-645377 7.25e-09 61_[-1(8.89e-12)]_10 chrIV:667648-668216 2.74e-01 100 chrIV:758462-759652 4.02e-01 100 chrIV:802572-803029 5.03e-05 26_[+2(6.82e-06)]_54 chrIV:835721-836321 4.96e-01 100 chrIV:884255-885052 1.22e-01 100 chrIV:946133-946636 2.06e-01 100 chrIV:980746-981172 6.06e-04 65_[-1(1.05e-07)]_6 chrIV:992687-993239 9.88e-01 100 chrIV:1013740-1013979 1.95e-01 100 chrIV:1016952-1017479 2.27e-06 42_[-1(1.59e-10)]_29 chrIV:1075228-1075755 1.99e-09 31_[-1(7.63e-12)]_17_[+2(4.17e-05)]_\ 3 chrIV:1095114-1095670 2.62e-05 28_[-1(1.33e-08)]_43 chrIV:1150699-1151169 3.57e-07 31_[+2(1.97e-11)]_49 chrIV:1162528-1164671 2.01e-01 100 chrIV:1175564-1176106 6.10e-04 49_[-2(8.50e-07)]_31 chrIV:1201526-1202144 1.67e-09 7_[+1(2.16e-11)]_64 chrIV:1256819-1257282 1.52e-13 8_[-1(1.27e-12)]_16_[+2(9.30e-07)]_\ 27 chrIV:1267947-1269420 1.04e-01 100 chrIV:1300340-1301388 7.57e-01 100 chrIV:1305403-1306067 9.33e-01 100 chrIV:1352028-1353404 9.92e-01 100 chrIV:1355710-1356029 5.75e-04 19_[+3(1.11e-07)]_10_[+3(1.08e-06)]_\ 43 chrIV:1359371-1359948 1.50e-02 [-3(3.74e-06)]_86 chrIV:1401058-1402515 1.08e-01 100 chrIV:1450543-1451620 6.57e-02 51_[+3(2.47e-05)]_35 chrIV:1461491-1461851 1.38e-01 100 chrIX:23456-25246 2.12e-01 100 chrIX:68180-68505 8.44e-04 56_[-3(3.92e-07)]_30 chrIX:99597-100090 1.32e-02 16_[+3(1.21e-05)]_70 chrIX:128241-129664 1.03e-01 100 chrIX:174854-175595 9.98e-01 100 chrIX:183311-183716 7.49e-06 24_[+2(3.64e-10)]_56 chrIX:197377-197842 4.39e-02 100 chrIX:210503-211701 9.06e-01 100 chrIX:248516-249014 1.46e-01 100 chrIX:254207-254583 3.26e-03 12_[+3(1.86e-06)]_74 chrIX:255185-256949 7.37e-01 100 chrIX:257337-258171 2.58e-01 100 chrIX:300011-300524 4.91e-12 11_[-1(2.16e-11)]_17_[+2(1.31e-07)]_\ 23 chrIX:315748-318734 3.79e-03 4_[+1(5.03e-05)]_67 chrIX:322402-324391 4.25e-01 100 chrIX:325732-326129 9.61e-01 100 chrIX:336082-336613 8.05e-07 3_[+2(5.75e-05)]_29_[-1(3.11e-09)]_\ 19 chrIX:370212-370693 1.03e-06 56_[+1(5.83e-10)]_15 chrIX:370946-371114 5.20e-01 100 chrIX:382087-382886 3.06e-02 28_[-3(5.84e-05)]_58 chrIX:391396-392129 1.01e-01 100 chrV:53488-54015 4.98e-03 16_[-3(4.86e-06)]_3_[+3(4.86e-06)]_\ 53 chrV:61045-62149 4.02e-01 100 chrV:67168-68893 7.01e-01 100 chrV:69099-69318 3.05e-05 21_[+3(6.33e-07)]_65 chrV:85112-87153 1.54e-01 100 chrV:99701-100343 7.48e-01 100 chrV:110341-111102 3.00e-03 5_[-3(9.37e-07)]_81 chrV:117203-118316 2.90e-01 100 chrV:130792-131401 1.35e-08 36_[-1(4.34e-11)]_35 chrV:134397-136064 7.25e-01 100 chrV:138461-139956 3.68e-01 100 chrV:140201-140921 6.84e-01 100 chrV:176913-177428 4.10e-06 20_[+1(5.83e-10)]_51 chrV:249787-250535 1.94e-02 39_[-1(8.43e-05)]_32 chrV:270016-270918 1.29e-02 68_[-3(3.40e-06)]_18 chrV:288167-288733 1.05e-03 43_[-1(2.15e-07)]_28 chrV:305813-306934 1.74e-01 100 chrV:311703-312273 7.89e-01 100 chrV:354710-355347 9.55e-03 50_[+3(1.75e-05)]_36 chrV:362153-363267 8.24e-01 100 chrV:395974-396589 6.77e-01 100 chrV:423065-423529 7.63e-03 23_[-3(2.07e-06)]_63 chrV:430988-431943 5.88e-01 100 chrV:434379-434977 7.66e-01 100 chrV:435634-436014 7.71e-04 24_[+2(1.31e-07)]_56 chrV:438489-438958 1.88e-10 32_[-2(3.21e-07)]_18_[+1(6.50e-11)]_\ 1 chrV:441772-442639 4.51e-01 100 chrV:443080-443380 6.43e-14 22_[-1(1.20e-11)]_18_[+2(3.64e-10)]_\ 11 chrV:469174-470404 9.58e-01 100 chrV:487099-487603 1.03e-06 30_[-1(5.83e-10)]_41 chrV:492172-492559 8.42e-06 37_[-1(6.52e-10)]_34 chrV:551006-551586 1.40e-07 39_[-1(1.20e-11)]_32 chrVI:4602-4786 1.27e-04 44_[-3(1.52e-06)]_1_[-3(2.55e-07)]_\ [-3(2.55e-07)]_13 chrVI:64275-65385 5.77e-01 100 chrVI:95419-95941 1.06e-04 5_[+3(2.55e-07)]_81 chrVI:101154-101551 6.85e-03 79_[-2(1.31e-06)]_1 chrVI:136678-137709 5.18e-01 100 chrVI:157835-158246 7.02e-01 100 chrVI:162031-162730 1.00e+00 100 chrVI:167259-167662 1.24e-03 32_[-2(4.82e-07)]_48 chrVI:180615-181679 9.04e-01 100 chrVI:191194-192029 1.79e-07 26_[+2(1.97e-11)]_54 chrVI:210454-211098 9.80e-01 100 chrVI:220507-222244 2.36e-01 100 chrVI:223237-224160 7.06e-02 100 chrVI:226617-227319 3.66e-01 100 chrVII:276-964 8.28e-01 100 chrVII:110267-110785 9.06e-01 100 chrVII:115333-115744 1.15e-11 5_[-2(2.04e-08)]_40_[+1(8.13e-10)]_\ 6 chrVII:122082-122824 9.68e-01 100 chrVII:148193-149831 9.98e-01 100 chrVII:185505-185909 1.89e-09 57_[-1(2.16e-11)]_14 chrVII:205301-205764 3.72e-04 44_[-2(3.94e-07)]_36 chrVII:254105-254704 9.81e-01 100 chrVII:277012-277453 1.68e-03 43_[-3(3.74e-06)]_43 chrVII:287176-287705 6.42e-03 39_[+2(2.87e-06)]_41 chrVII:290931-291931 4.26e-01 100 chrVII:310402-312245 9.67e-01 100 chrVII:319257-320148 8.97e-01 100 chrVII:328391-329187 8.45e-01 100 chrVII:365773-366658 5.83e-03 53_[+3(1.75e-05)]_4_[+3(1.66e-06)]_\ 15 chrVII:371162-371550 4.44e-05 47_[-3(1.08e-06)]_10_[-1(6.53e-05)] chrVII:405461-405831 9.41e-01 100 chrVII:412007-412590 1.06e-06 46_[-1(6.50e-11)]_25 chrVII:422680-423377 3.97e-01 100 chrVII:438421-439872 7.33e-01 100 chrVII:440525-440995 2.68e-08 6_[-1(4.77e-08)]_36_[+2(1.48e-07)]_\ 9 chrVII:479265-482693 2.84e-01 100 chrVII:516685-518934 2.62e-01 100 chrVII:531314-531797 4.09e-01 100 chrVII:533815-535192 9.95e-01 100 chrVII:541703-542342 7.04e-01 100 chrVII:544404-544902 7.13e-02 19_[+2(2.36e-05)]_61 chrVII:555117-555912 6.49e-04 44_[-3(1.71e-07)]_3_[+3(1.75e-05)]_\ 25 chrVII:648773-649382 4.27e-01 100 chrVII:661548-661974 1.83e-03 43_[-2(1.68e-06)]_37 chrVII:700407-701241 9.19e-01 100 chrVII:706936-707187 7.35e-01 100 chrVII:726190-728040 6.37e-01 100 chrVII:730954-731864 3.56e-01 100 chrVII:736198-736950 8.67e-01 100 chrVII:738930-739541 4.19e-01 100 chrVII:774132-774686 2.59e-05 32_[+1(1.71e-09)]_39 chrVII:779402-779909 4.22e-09 16_[-2(7.25e-06)]_16_[+1(4.15e-10)]_\ 19 chrVII:788126-788781 1.69e-01 100 chrVII:794107-794572 5.93e-01 100 chrVII:823340-823708 1.88e-10 13_[-2(3.21e-07)]_18_[+1(6.50e-11)]_\ 20 chrVII:828396-828959 8.19e-01 100 chrVII:845467-846362 3.48e-01 100 chrVII:856683-857676 5.94e-01 100 chrVII:876187-876982 9.99e-01 100 chrVII:878553-879107 1.55e-03 9_[+2(2.87e-06)]_71 chrVII:882434-883863 8.36e-01 100 chrVII:930869-931172 2.79e-03 27_[+2(4.36e-07)]_53 chrVII:1000311-1000605 1.25e-03 48_[-3(3.74e-06)]_38 chrVII:1004047-1004438 3.13e-08 29_[-2(1.68e-06)]_16_[+1(2.02e-08)]_\ 6 chrVII:1011095-1011405 1.80e-01 100 chrVIII:34516-36115 4.46e-01 100 chrVIII:62484-63299 9.63e-01 100 chrVIII:74736-75890 8.81e-01 100 chrVIII:103662-105407 4.12e-02 100 chrVIII:115941-116366 3.22e-12 4_[-1(3.69e-10)]_17_[+2(1.92e-09)]_\ 30 chrVIII:119662-121550 3.99e-01 100 chrVIII:125873-126331 7.06e-04 48_[-3(1.34e-07)]_38 chrVIII:133841-134917 1.93e-08 33_[+1(8.89e-12)]_38 chrVIII:145766-146465 5.53e-01 100 chrVIII:148924-149304 6.36e-04 17_[+3(6.33e-07)]_[+3(8.52e-05)]_55 chrVIII:173499-175764 6.66e-02 100 chrVIII:214143-214340 4.43e-01 100 chrVIII:237051-237596 2.73e-01 100 chrVIII:237762-238158 2.49e-04 3_[+2(1.48e-07)]_77 chrVIII:296843-297271 1.68e-02 48_[-3(1.04e-05)]_38 chrVIII:297446-297699 9.21e-01 100 chrVIII:358276-358799 3.23e-04 56_[+2(1.48e-07)]_24 chrVIII:381456-382338 4.67e-01 100 chrVIII:382855-383363 9.99e-04 20_[+3(8.08e-05)]_7_[+3(2.94e-07)]_\ 3_[+3(1.21e-05)]_28 chrVIII:388607-389007 1.93e-01 100 chrVIII:451330-453401 4.31e-02 100 chrVIII:466819-467332 2.78e-05 6_[+1(2.55e-09)]_65 chrVIII:475533-475909 1.39e-07 35_[-1(7.63e-12)]_36 chrVIII:505793-506221 5.54e-03 43_[+3(9.37e-07)]_43 chrVIII:556603-556920 1.95e-03 44_[-2(1.55e-06)]_36 chrX:59013-59442 9.96e-01 100 chrX:73335-76484 2.55e-01 100 chrX:89895-90470 8.03e-01 100 chrX:115736-116267 1.75e-01 100 chrX:120505-121892 4.06e-01 100 chrX:138794-140174 7.26e-01 100 chrX:157380-157918 5.53e-05 5_[+3(6.93e-08)]_81 chrX:197195-197438 2.63e-05 47_[-1(1.71e-09)]_24 chrX:204544-205099 2.49e-05 5_[+1(3.11e-09)]_66 chrX:233667-234167 3.63e-04 77_[-2(3.63e-08)]_3 chrX:353987-354475 3.15e-03 68_[-2(4.82e-07)]_12 chrX:355181-355754 5.51e-02 44_[-2(2.36e-05)]_36 chrX:374201-374853 5.49e-08 29_[-1(2.31e-09)]_16_[+2(6.03e-06)]_\ 6 chrX:378191-378571 1.20e-04 34_[-2(3.21e-07)]_46 chrX:389880-390355 6.40e-01 100 chrX:390560-392156 7.93e-03 2_[-2(9.15e-06)]_78 chrX:396422-396954 7.33e-01 100 chrX:414500-415266 9.35e-01 100 chrX:415801-416229 1.21e-04 45_[+2(2.87e-06)]_35 chrX:422726-423381 2.22e-01 100 chrX:424265-424727 6.59e-05 43_[+2(7.99e-09)]_37 chrX:517656-518077 7.15e-04 42_[+2(1.68e-06)]_38 chrX:523109-524388 3.03e-01 100 chrX:531555-532439 9.17e-01 100 chrX:538031-538785 3.16e-01 100 chrX:540961-541713 7.07e-01 100 chrX:542723-543260 2.52e-04 77_[+2(4.82e-07)]_3 chrX:545113-545754 6.26e-01 100 chrX:607878-608152 2.31e-03 29_[-3(8.37e-07)]_4_[-3(1.04e-05)]_\ 39 chrX:617707-618252 6.63e-04 60_[+3(1.52e-05)]_26 chrX:651246-651607 8.92e-03 68_[-3(1.04e-05)]_18 chrX:651875-653011 1.81e-01 100 chrX:702546-703798 8.13e-01 100 chrX:745009-745749 2.88e-01 100 chrXI:46710-46995 7.81e-01 100 chrXI:67728-68061 1.08e-02 67_[-3(8.91e-06)]_19 chrXI:74364-74810 3.77e-01 100 chrXI:83984-84449 7.23e-05 47_[-2(1.66e-07)]_33 chrXI:99735-99956 3.50e-01 100 chrXI:107416-110106 4.21e-01 100 chrXI:140626-141485 1.03e-06 13_[-1(5.83e-10)]_58 chrXI:158163-158665 8.48e-03 34_[-3(1.04e-05)]_7_[-3(9.44e-05)]_\ 31 chrXI:162285-162732 6.87e-08 29_[-1(2.31e-09)]_16_[+2(6.03e-06)]_\ 6 chrXI:202502-203275 1.87e-01 100 chrXI:219605-220118 7.38e-01 100 chrXI:283061-284477 1.08e-01 100 chrXI:302696-303206 6.64e-03 22_[-2(2.87e-06)]_58 chrXI:307935-308568 1.95e-01 100 chrXI:313188-314013 6.98e-01 100 chrXI:326412-327410 3.19e-01 100 chrXI:379676-379945 9.05e-01 100 chrXI:382161-382481 1.03e-03 32_[-3(2.30e-06)]_54 chrXI:430819-431705 8.70e-01 100 chrXI:457943-458845 4.72e-01 100 chrXI:490765-491277 1.42e-10 2_[-2(3.63e-08)]_17_[+1(6.52e-10)]_\ 32 chrXI:513044-513608 4.09e-05 56_[-1(3.11e-09)]_15 chrXI:517794-518124 4.04e-01 100 chrXI:558714-559405 1.61e-01 100 chrXI:578774-579425 9.99e-01 100 chrXI:618744-619367 2.96e-02 5_[+3(8.21e-06)]_81 chrXI:630521-630903 1.31e-01 100 chrXI:666412-666789 1.34e-04 61_[+3(2.55e-07)]_8_[+3(2.82e-05)]_\ 3 chrXII:11198-11503 4.17e-05 11_[-3(2.55e-07)]_11_[-3(1.52e-06)]_\ 50 chrXII:48686-49454 7.60e-01 100 chrXII:92349-92891 5.32e-07 50_[+1(1.80e-10)]_21 chrXII:167783-168239 1.64e-06 38_[+2(1.08e-10)]_42 chrXII:198683-199698 1.49e-01 100 chrXII:214668-215066 3.07e-07 66_[-1(2.49e-11)]_5 chrXII:232107-234069 6.65e-01 100 chrXII:241610-242032 3.93e-03 34_[-3(5.90e-07)]_7_[-3(2.56e-06)]_\ 31 chrXII:261461-263955 3.16e-01 100 chrXII:366011-366570 6.53e-01 100 chrXII:369673-370242 6.12e-01 100 chrXII:370612-370897 1.04e-02 12_[+3(8.97e-05)]_74 chrXII:374198-374665 1.44e-06 16_[+1(6.52e-10)]_55 chrXII:424160-424566 2.02e-01 100 chrXII:426807-427472 7.13e-02 48_[-2(2.36e-05)]_32 chrXII:440636-441633 2.16e-01 100 chrXII:448528-448856 3.86e-11 8_[-1(8.89e-12)]_16_[+2(6.82e-06)]_\ 27 chrXII:459588-460754 1.51e-01 100 chrXII:498459-499939 7.48e-01 100 chrXII:515301-517049 1.57e-01 100 chrXII:521481-523317 3.99e-01 100 chrXII:592317-592976 8.69e-01 100 chrXII:605141-605619 3.44e-05 76_[+2(2.37e-08)]_4 chrXII:627697-628802 7.12e-01 100 chrXII:636758-639864 1.84e-01 100 chrXII:656841-657216 1.53e-04 2_[+2(1.10e-08)]_78 chrXII:673514-674256 7.23e-01 100 chrXII:713157-713705 7.93e-01 100 chrXII:731541-732355 9.94e-01 100 chrXII:734564-734928 9.51e-01 100 chrXII:780614-781895 5.78e-02 100 chrXII:783915-784510 1.79e-01 100 chrXII:793532-795904 8.38e-01 100 chrXII:796330-797498 6.75e-02 100 chrXII:805804-806821 4.84e-01 100 chrXII:818500-819499 2.15e-03 48_[-3(1.19e-06)]_38 chrXII:837679-839216 2.51e-01 100 chrXII:875162-875622 6.69e-06 7_[-1(9.26e-05)]_3_[-2(2.04e-08)]_\ 41 chrXII:897654-899689 9.96e-01 100 chrXII:903134-904383 6.26e-01 100 chrXII:921712-923682 4.37e-01 100 chrXII:931108-931846 2.97e-02 100 chrXII:932053-932539 3.02e-04 20_[+3(5.45e-08)]_19_[+3(7.44e-07)]_\ 33 chrXII:951179-953659 1.45e-01 100 chrXII:962337-963327 9.34e-01 100 chrXII:975732-976181 9.96e-01 100 chrXII:1012072-1013736 5.87e-01 100 chrXII:1018099-1019599 7.73e-01 100 chrXII:1028176-1028609 6.17e-03 54_[-3(1.35e-06)]_2_[+3(4.92e-05)]_\ 16 chrXII:1051900-1052229 1.40e-07 57_[-1(1.20e-11)]_14 chrXIII:91385-92089 4.36e-02 100 chrXIII:131604-132100 5.49e-08 23_[-1(2.31e-09)]_16_[+2(6.03e-06)]_\ 12 chrXIII:145568-147232 8.62e-02 54_[-1(7.91e-05)]_17 chrXIII:161983-162686 8.37e-01 100 chrXIII:162980-164154 8.73e-01 100 chrXIII:168221-169046 9.93e-01 100 chrXIII:183802-183968 5.48e-09 63_[-1(2.46e-13)]_8 chrXIII:195957-196306 1.45e-04 63_[+2(1.31e-06)]_17 chrXIII:224632-225902 2.71e-01 100 chrXIII:253393-253593 1.87e-01 100 chrXIII:259013-259382 6.47e-11 11_[-1(1.05e-07)]_26_[+2(1.08e-10)]_\ 14 chrXIII:290542-291152 1.03e-06 45_[+1(5.83e-10)]_26 chrXIII:296643-298867 4.07e-01 100 chrXIII:302855-303221 1.38e-02 100 chrXIII:320841-321328 2.05e-01 100 chrXIII:352029-353149 8.05e-01 100 chrXIII:362929-363645 7.35e-01 100 chrXIII:372207-372659 6.58e-07 62_[-1(6.50e-11)]_9 chrXIII:379052-379620 1.63e-04 17_[-1(3.02e-08)]_54 chrXIII:420320-420854 9.92e-07 51_[-1(6.50e-11)]_20 chrXIII:433476-433770 8.13e-01 100 chrXIII:463370-463907 1.84e-05 7_[+1(3.11e-09)]_64 chrXIII:480398-480826 2.10e-08 59_[-1(2.16e-11)]_12 chrXIII:499067-500692 2.88e-01 100 chrXIII:500859-501138 3.00e-03 26_[-3(1.19e-06)]_60 chrXIII:504920-505245 2.56e-01 100 chrXIII:550049-551828 7.86e-01 100 chrXIII:552139-553185 4.57e-01 100 chrXIII:553417-553615 2.85e-01 100 chrXIII:557487-558421 5.03e-01 100 chrXIII:572643-573140 5.28e-05 42_[-1(4.14e-09)]_29 chrXIII:586324-586908 6.52e-07 70_[-1(6.50e-11)]_1 chrXIII:650774-651076 9.00e-01 100 chrXIII:651577-652894 8.48e-01 100 chrXIII:731990-732531 1.04e-03 11_[+3(2.56e-06)]_75 chrXIII:747638-748135 3.32e-05 56_[-1(2.31e-09)]_15 chrXIII:752794-754946 6.37e-01 100 chrXIII:768181-768449 9.86e-01 100 chrXIII:807939-808552 3.00e-08 51_[-1(8.89e-12)]_20 chrXIII:837714-838206 5.58e-04 23_[-2(4.82e-07)]_57 chrXIII:861220-861408 1.60e-01 100 chrXIII:872690-873079 2.98e-01 100 chrXIV:6616-7022 1.69e-03 5_[+2(1.55e-06)]_75 chrXIV:61958-62702 4.97e-01 100 chrXIV:63079-64241 4.91e-01 100 chrXIV:96002-96551 4.22e-09 15_[-1(4.15e-10)]_16_[+2(7.25e-06)]_\ 20 chrXIV:102578-103108 3.65e-01 100 chrXIV:104621-105048 5.15e-12 26_[-2(1.92e-09)]_17_[+1(3.69e-10)]_\ 8 chrXIV:240840-242108 8.62e-01 100 chrXIV:302671-303962 7.79e-01 100 chrXIV:330734-331164 6.24e-03 49_[-3(1.86e-06)]_37 chrXIV:331336-331671 1.96e-01 100 chrXIV:374659-375437 7.26e-01 100 chrXIV:405695-405962 2.94e-02 47_[-2(5.00e-05)]_33 chrXIV:413595-414974 7.70e-01 100 chrXIV:442795-443266 7.36e-04 31_[-2(3.94e-07)]_49 chrXIV:444235-445335 1.34e-01 100 chrXIV:493903-495649 8.04e-01 100 chrXIV:499262-500727 8.77e-01 100 chrXIV:518811-519140 4.43e-01 100 chrXIV:525066-525287 7.39e-01 100 chrXIV:546406-547647 7.66e-01 100 chrXIV:560590-560873 5.15e-12 12_[-1(3.69e-10)]_17_[+2(1.92e-09)]_\ 22 chrXIV:568048-568773 9.26e-01 100 chrXIV:569636-570148 6.43e-14 25_[-1(1.20e-11)]_18_[+2(3.64e-10)]_\ 8 chrXIV:602084-602560 3.10e-06 45_[-2(3.64e-10)]_35 chrXIV:631655-632095 1.57e-11 21_[-1(6.08e-14)]_50 chrXIV:632416-632856 2.48e-10 18_[-2(7.99e-09)]_18_[+1(6.02e-09)]_\ 15 chrXIV:721203-721789 9.58e-01 100 chrXIV:721962-722803 4.82e-01 100 chrXIV:725966-726340 1.60e-04 34_[+1(5.96e-08)]_37 chrXIV:783495-784326 3.15e-01 100 chrXV:79709-80148 1.82e-03 69_[+3(3.21e-07)]_17 chrXV:92756-94180 2.50e-01 100 chrXV:94386-94813 2.85e-02 84_[-3(1.04e-05)]_2 chrXV:109501-110660 5.29e-01 100 chrXV:110857-111207 1.22e-02 25_[+2(7.25e-06)]_55 chrXV:113581-113987 4.94e-06 73_[-2(1.92e-09)]_7 chrXV:159131-160143 3.07e-01 100 chrXV:161077-161693 4.63e-01 100 chrXV:167947-168572 9.80e-01 100 chrXV:216273-216709 1.92e-03 8_[-3(7.53e-06)]_10_[-3(2.02e-05)]_\ 54 chrXV:226400-226892 1.29e-12 15_[-1(2.46e-13)]_15_[+2(4.36e-07)]_\ 21 chrXV:228114-228570 7.73e-05 44_[-2(7.99e-09)]_36 chrXV:252872-254115 1.56e-01 100 chrXV:274477-274999 2.44e-04 55_[+1(2.76e-07)]_16 chrXV:281981-282430 1.36e-12 14_[-2(4.36e-07)]_15_[+1(2.46e-13)]_\ 22 chrXV:287781-288429 2.86e-02 56_[+1(5.55e-05)]_15 chrXV:300889-301875 9.19e-01 100 chrXV:340167-340695 9.64e-01 100 chrXV:353887-354333 1.19e-05 27_[+2(1.92e-09)]_53 chrXV:438449-439022 2.51e-07 23_[+1(8.13e-10)]_48 chrXV:444646-446234 1.02e-01 100 chrXV:464277-464945 1.00e+00 100 chrXV:487433-487789 7.67e-01 100 chrXV:505020-505541 8.35e-03 62_[-3(3.40e-06)]_24 chrXV:506128-506712 5.46e-01 100 chrXV:514188-514705 5.10e-01 100 chrXV:571620-572143 1.00e+00 100 chrXV:594309-594658 6.06e-01 100 chrXV:619983-621358 5.47e-01 100 chrXV:639113-639464 4.04e-06 78_[+3(4.25e-09)]_8 chrXV:662887-664104 4.70e-01 100 chrXV:678517-679191 5.76e-01 100 chrXV:710123-710717 4.37e-02 100 chrXV:778588-780990 8.07e-01 100 chrXV:853835-854807 9.28e-01 100 chrXV:866333-867245 1.74e-02 16_[+3(8.91e-06)]_70 chrXV:901427-901676 4.51e-03 38_[+3(1.08e-06)]_48 chrXV:925199-925410 1.36e-01 100 chrXV:968092-968537 8.75e-03 4_[+3(1.64e-05)]_82 chrXV:976269-976898 7.71e-01 100 chrXV:978771-979173 1.84e-02 15_[+3(1.64e-05)]_71 chrXV:979748-981119 1.08e-01 70_[-3(7.67e-05)]_16 chrXV:1004022-1004424 6.87e-03 73_[+3(2.07e-06)]_13 chrXV:1025713-1026085 2.87e-03 25_[-3(2.07e-06)]_61 chrXV:1027878-1029863 4.92e-03 86_[+3(7.44e-07)] chrXVI:55823-56426 4.49e-01 100 chrXVI:75387-77043 4.62e-01 100 chrXVI:134838-135837 2.96e-01 100 chrXVI:188581-188955 1.35e-03 70_[-3(1.52e-06)]_16 chrXVI:210047-210528 4.35e-01 100 chrXVI:279974-280240 3.26e-03 55_[-3(6.33e-07)]_31 chrXVI:281561-282970 9.09e-01 100 chrXVI:302647-304221 2.27e-03 6_[+2(3.09e-06)]_74 chrXVI:338478-339120 3.25e-01 100 chrXVI:340460-340780 1.75e-01 100 chrXVI:378639-379011 4.13e-04 39_[+3(2.56e-06)]_11_[+3(8.37e-07)]_\ 22 chrXVI:406177-406616 1.53e-02 23_[-3(6.39e-06)]_2_[-3(6.52e-05)]_\ 47 chrXVI:432530-434376 5.42e-01 100 chrXVI:435303-436208 6.81e-01 100 chrXVI:520037-520557 3.01e-02 85_[+3(2.82e-05)]_1 chrXVI:559958-560297 5.07e-01 100 chrXVI:572043-572690 2.38e-01 100 chrXVI:581819-582292 3.37e-04 62_[-2(1.31e-07)]_18 chrXVI:622331-623058 2.01e-01 100 chrXVI:627233-628314 4.96e-01 100 chrXVI:689391-689862 2.69e-04 40_[+1(2.15e-07)]_31 chrXVI:699588-700651 1.36e-02 63_[-3(2.16e-05)]_23 chrXVI:701888-702448 7.42e-01 100 chrXVI:731881-732317 1.43e-03 53_[-3(1.66e-06)]_33 chrXVI:744098-744622 5.16e-06 15_[+1(2.02e-08)]_56 chrXVI:768998-769504 1.15e-11 6_[-1(8.13e-10)]_40_[+2(2.04e-08)]_\ 5 chrXVI:775646-776078 9.48e-01 100 chrXVI:794474-796176 9.02e-01 100 chrXVI:810576-811405 2.11e-01 100 chrXVI:819328-820294 4.62e-01 100 chrXVI:856698-857170 1.04e-10 23_[-2(1.10e-08)]_17_[+1(1.71e-09)]_\ 11 chrXVI:860168-860718 1.08e-09 26_[+1(2.46e-13)]_45 chrXVI:879835-880566 9.54e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************