******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--PDR1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71790-73712 1.0000 100 chrI:81921-82334 1.0000 100 chrI:138881-139357 1.0000 100 chrI:166169-166616 1.0000 100 chrI:180945-181516 1.0000 100 chrI:182247-183172 1.0000 100 chrII:9374-9995 1.0000 100 chrII:36234-36601 1.0000 100 chrII:44950-45369 1.0000 100 chrII:45588-46685 1.0000 100 chrII:59517-59686 1.0000 100 chrII:59833-61289 1.0000 100 chrII:87886-88570 1.0000 100 chrII:88959-90122 1.0000 100 chrII:165070-165427 1.0000 100 chrII:167578-169721 1.0000 100 chrII:181315-181630 1.0000 100 chrII:197238-197835 1.0000 100 chrII:226968-227357 1.0000 100 chrII:255079-255677 1.0000 100 chrII:266190-266970 1.0000 100 chrII:326498-327165 1.0000 100 chrII:332168-333178 1.0000 100 chrII:347368-347939 1.0000 100 chrII:350579-351052 1.0000 100 chrII:392996-394735 1.0000 100 chrII:405669-406315 1.0000 100 chrII:413737-415284 1.0000 100 chrII:415507-415876 1.0000 100 chrII:477028-477743 1.0000 100 chrII:592279-593500 1.0000 100 chrII:604059-607129 1.0000 100 chrII:642852-643338 1.0000 100 chrII:644955-645438 1.0000 100 chrII:680366-682361 1.0000 100 chrIII:63-1029 1.0000 100 chrIII:30573-30942 1.0000 100 chrIII:82392-82681 1.0000 100 chrIII:90852-91138 1.0000 100 chrIII:107253-107773 1.0000 100 chrIII:123351-123805 1.0000 100 chrIII:127573-127885 1.0000 100 chrIII:142180-142982 1.0000 100 chrIII:149708-150199 1.0000 100 chrIII:151020-151607 1.0000 100 chrIII:162516-163912 1.0000 100 chrIII:168010-168543 1.0000 100 chrIII:177057-178809 1.0000 100 chrIII:227751-228512 1.0000 100 chrIII:295311-296040 1.0000 100 chrIV:6-313 1.0000 100 chrIV:45202-46159 1.0000 100 chrIV:83432-83830 1.0000 100 chrIV:117140-118240 1.0000 100 chrIV:118438-118898 1.0000 100 chrIV:125318-126166 1.0000 100 chrIV:128904-130982 1.0000 100 chrIV:216631-218077 1.0000 100 chrIV:221140-222364 1.0000 100 chrIV:229462-230754 1.0000 100 chrIV:308006-310175 1.0000 100 chrIV:321658-321946 1.0000 100 chrIV:322205-323589 1.0000 100 chrIV:339784-340012 1.0000 100 chrIV:340162-341649 1.0000 100 chrIV:357899-358450 1.0000 100 chrIV:359271-359780 1.0000 100 chrIV:382050-384830 1.0000 100 chrIV:410186-410787 1.0000 100 chrIV:411247-411677 1.0000 100 chrIV:411851-412021 1.0000 100 chrIV:416943-417318 1.0000 100 chrIV:434018-435005 1.0000 100 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100 chrXV:925220-925429 1.0000 100 chrXV:968133-968878 1.0000 100 chrXV:976270-976694 1.0000 100 chrXV:978791-979128 1.0000 100 chrXV:979931-981084 1.0000 100 chrXV:1003921-1004967 1.0000 100 chrXV:1025720-1026062 1.0000 100 chrXV:1027819-1029488 1.0000 100 chrXVI:55835-56432 1.0000 100 chrXVI:75318-77304 1.0000 100 chrXVI:134382-135843 1.0000 100 chrXVI:172870-174100 1.0000 100 chrXVI:188613-188937 1.0000 100 chrXVI:209985-210514 1.0000 100 chrXVI:280547-282937 1.0000 100 chrXVI:302334-304474 1.0000 100 chrXVI:338482-339140 1.0000 100 chrXVI:378657-378986 1.0000 100 chrXVI:404540-405949 1.0000 100 chrXVI:406188-407833 1.0000 100 chrXVI:424826-425021 1.0000 100 chrXVI:425168-425447 1.0000 100 chrXVI:435656-436203 1.0000 100 chrXVI:520005-520530 1.0000 100 chrXVI:559896-560299 1.0000 100 chrXVI:572040-572765 1.0000 100 chrXVI:581678-582391 1.0000 100 chrXVI:622299-622835 1.0000 100 chrXVI:642254-643374 1.0000 100 chrXVI:645421-646199 1.0000 100 chrXVI:689384-689882 1.0000 100 chrXVI:699894-700557 1.0000 100 chrXVI:701888-702358 1.0000 100 chrXVI:718384-719523 1.0000 100 chrXVI:730722-731312 1.0000 100 chrXVI:731639-732446 1.0000 100 chrXVI:744072-744619 1.0000 100 chrXVI:768968-769490 1.0000 100 chrXVI:775651-776157 1.0000 100 chrXVI:794153-796167 1.0000 100 chrXVI:810579-811241 1.0000 100 chrXVI:819321-819854 1.0000 100 chrXVI:821645-822190 1.0000 100 chrXVI:856731-857153 1.0000 100 chrXVI:860128-860839 1.0000 100 chrXVI:880040-880568 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--PDR1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--PDR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--PDR1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 563 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56300 N= 563 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.302 C 0.198 G 0.198 T 0.302 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--PDR1/background): A 0.310 C 0.190 G 0.190 T 0.310 ******************************************************************************** ******************************************************************************** MOTIF CVDCSSGGRATCGAACCSVGGACCTYH MEME-1 width = 27 sites = 98 llr = 1717 E-value = 3.2e-342 ******************************************************************************** -------------------------------------------------------------------------------- Motif CVDCSSGGRATCGAACCSVGGACCTYH MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2233:13:55:::a9:::2:26:::13 pos.-specific C 54:634:::1:8:::976421:66344 probability G 1251556a52::a:1::336711212: matrix T 222:2:1::2a2:::12112:232643 bits 2.4 2.2 * * 1.9 * * * 1.7 * * ** * Relative 1.4 * ****** Entropy 1.2 * * ******* (25.3 bits) 1.0 * ** ******** * * 0.7 ****** ******** ** *** 0.5 ******* ******** ****** 0.2 ********* ***************** 0.0 --------------------------- Multilevel CCGCGGGGGATCGAACCCCGGACCTTC consensus AAAACCA AT T GGTATT CCA sequence TGT T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVDCSSGGRATCGAACCSVGGACCTYH MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chrIII:123351-123805 + 54 2.03e-13 AATGTGGGGC GAGCCGGGACTCGAACCCGGGACCTCC CGCACCCTAA chrIV:1075299-1075749 + 3 2.15e-11 TC CAACCGAGGATCGAACTCGGGACCTTT GCCGTGTGAA chrIV:1016947-1017520 + 29 2.51e-11 AGAAACTCCG AAGCGGGGAGTCGAACCCCGGTCTCCA CGGTGAGAAC chrXVI:880040-880568 + 47 2.92e-11 AGAAATGGTC TCTAGCGGGATCGAACCGCTGATCCCC GCGTTATTAG chrXVI:819321-819854 - 34 2.92e-11 ATAAATGGTC TCTAGCGGGATCGAACCGCTGATCCCC GCGTTATTAG chrXIV:569643-570160 + 21 2.92e-11 AAGAATGGTC TCTAGCGGGATCGAACCGCTGATCCCC GCGTTATTAG chrXII:1051927-1052222 + 52 2.92e-11 AATAATGGTC TCTAGCGGGATCGAACCGCTGATCCCC GCGTTATTAG chrV:551038-551578 + 32 2.92e-11 AAAAATGGTC TCTAGCGGGATCGAACCGCTGATCCCC GCGTTATTAG chrV:442989-443387 + 69 2.92e-11 AAATATGGTC TCTAGCGGGATCGAACCGCTGATCCCC GCGTT chrII:197238-197835 - 50 2.92e-11 AAAAATGGTC TCTAGCGGGATCGAACCGCTGATCCCC GCGTTATTAG chrXIII:586392-586899 + 46 5.29e-11 AAAAATGATT TCGCCCAGGATCGAACTGGGGACGTTC TGCGTGTTAA chrVII:823339-823705 - 52 5.29e-11 AAAAATGATT TCGCCCAGGATCGAACTGGGGACGTTC TGCGTGTTAA chrVII:412026-412600 + 36 5.29e-11 AAACTTGATT TCGCCCAGGATCGAACTGGGGACGTTC TGCGTGTTAA chrV:469260-469750 - 44 5.29e-11 AAAAATGATT TCGCCCAGGATCGAACTGGGGACGTTC TGCGTGTTAA chrV:438501-438991 - 46 5.29e-11 AAAATTGATT TCGCCCAGGATCGAACTGGGGACGTTC TGCGTGTTAA chrII:326498-327165 + 16 8.14e-11 GAGTTTGATC CAACCGAGGTTCGAACTCGGGATCTTC GCCGTGTAAA chrXV:281983-282385 - 69 1.42e-10 TGCGC AAGCCCGGAATCGAACCGGGGGCCCAA CGATGGCAAC chrXV:226416-226898 + 9 1.42e-10 ATTTGCGC AAGCCCGGAATCGAACCGGGGGCCCAA CGATGGCAAC chrX:531551-532237 - 23 1.42e-10 GAAACTGCGC AAGCCCGGAATCGAACCGGGGGCCCAA CGATGGCAAC chrX:396503-397004 + 28 1.42e-10 AGAAATGCGC AAGCCCGGAATCGAACCGGGGGCCCAA CGATGGCAAC chrVII:845433-845969 - 37 1.42e-10 AACATTGCGC AAGCCCGGAATCGAACCGGGGGCCCAA CGATGGCAAC chrVI:180665-181257 + 68 1.42e-10 AGGACTGCGC AAGCCCGGAATCGAACCGGGGGCCCAA CGATGG chrIV:83432-83830 - 6 1.42e-10 AAACTTGCGC AAGCCCGGAATCGAACCGGGGGCCCAA CGATG chrXIII:290545-291210 - 14 1.86e-10 GAAGACTCCG ATACGGGGAGTCGAACCCCGGTCTCCA CGGTGAAAGC chrXII:448500-448856 + 27 1.86e-10 AAAGAAGGTC CTACCCGGATTCGAACCGGGGTTGTCC GGATCAAAAC chrXI:140643-141413 + 45 1.86e-10 GAAAACTCCG ATACGGGGAGTCGAACCCCGGTCTCCA CGGTGAAAGC chrVII:328367-328967 - 6 1.86e-10 AAAAACTCCG ATACGGGGAGTCGAACCCCGGTCTCCA CGGTG chrV:487106-487596 + 35 1.86e-10 GAATACTCCG ATACGGGGAGTCGAACCCCGGTCTCCA CGGTGAAAGC chrIX:370218-370652 - 72 1.86e-10 CG ATACGGGGAGTCGAACCCCGGTCTCCA CGGTGAAAGC chrIV:802538-803013 + 11 1.86e-10 AAAAGAGGTC CTACCCGGATTCGAACCGGGGTTGTCC GGATCAAAAC chrIV:644925-645375 + 58 1.86e-10 AAAAAAGGTC CTACCCGGATTCGAACCGGGGTTGTCC GGATCAAAAC chrII:644955-645438 - 61 1.86e-10 AATAACTCCG ATACGGGGAGTCGAACCCCGGTCTCCA CGGTGAAAGC chrIV:1256802-1257291 + 17 2.42e-10 AAAAATGCGG AAGCCGGGAATCGAACCCGGGCCCCAT GCTTGGGAAG chrXII:214693-215064 + 60 2.76e-10 ATAAATGGAC GCAACCGGAATCGAACCGATGACCTCT TCCTTGCAAG chrXV:976270-976694 - 30 5.21e-10 AATATTGCTC CAGGGGAGGTTCGAACTCTCGACCTTC AGATTATGAG chrXIII:808044-808554 + 2 5.21e-10 C CCACCCGGATTCGAACTGGGGTTGTTC GGATCAGAAC chrXIII:480394-480824 + 67 5.21e-10 AAAGAAGCCC TGTAGGGGGCTCGAACCCCTAACCTTA TGATTAA chrX:422675-423246 - 68 5.21e-10 GTGCTC CAGGGGAGGTTCGAACTCTCGACCTTC AGATTATGAG chrX:414744-415265 - 53 5.21e-10 ATATTAGCCC TGTAGGGGGCTCGAACCCCTAACCTTA TGATTAAGAG chrV:435557-436024 + 17 5.21e-10 AAGAAAGCCC TGTAGGGGGCTCGAACCCCTAACCTTA TGATTAAGAG chrIX:300024-300490 + 26 5.21e-10 AAGATAGCCC TGTAGGGGGCTCGAACCCCTAACCTTA TGATTAAGAG chrIV:1201534-1202099 - 25 5.21e-10 TTATTAGCCC TGTAGGGGGCTCGAACCCCTAACCTTA TGATTAAGAG chrIV:1175583-1176136 - 61 5.21e-10 AAAAATGCTC CAGGGGAGGTTCGAACTCTCGACCTTC AGATTATGAG chrIII:151020-151607 + 26 5.21e-10 AAGAAAGCCC TGTAGGGGGCTCGAACCCCTAACCTTA TGATTAAGAG chrXV:300880-301495 - 30 7.54e-10 AAAAGGGGGC GAGCTGGGAATTGAACCCAGGGCCTCT CGCATGCTTT chrXIII:195931-196301 + 7 7.54e-10 AGGGGC GAGCTGGGAATTGAACCCAGGGCCTCT CGCATGCTTT chrXVI:768968-769490 + 33 1.08e-09 AAGAACTCCT CATAGGGGGCTCGAACCCCTGACATTT CGGTATCCTT chrXI:578748-579353 - 29 1.08e-09 AAGAACTCCT CATAGGGGGCTCGAACCCCTGACATTT CGGTATCCTT chrVII:115317-115752 - 68 1.08e-09 ACTCCT CATAGGGGGCTCGAACCCCTGACATTT CGGTATCCTT chrXIV:95998-96531 + 32 1.36e-09 AAATTTGAGC GGTACGAGAATCGAACCCGTGTCCCCA CCTTGGAAGG chrVII:779412-779926 - 37 1.36e-09 AATCTTGAGC GGTACGAGAATCGAACCCGTGTCCCCA CCTTGGAAGG chrV:130810-131367 + 49 1.36e-09 AAAATAGGTC TTACCCGGATTCGAACCGGGGTTGTTC GGATCAAAAC chrXIII:131598-132099 + 32 1.92e-09 CAAAGCACTC ACGATGGGGGTCGAACCCATAATCTTC TGATTAGAAG chrXII:426900-427484 - 30 1.92e-09 AAATTCTCCG CGACGGGGAATTGAACCCCGATCTGGC ACGCGACAAG chrXI:513128-513613 + 17 1.92e-09 AAAATCTCCG CGACGGGGAATTGAACCCCGATCTGGC ACGCGACAAG chrX:374172-374878 + 36 1.92e-09 CAAAGCACTC ACGATGGGGGTCGAACCCATAATCTTC TGATTAGAAG chrX:204543-205066 - 21 1.92e-09 AAAATCTCCG CGACGGGGAATTGAACCCCGATCTGGC ACGCGACAAG chrVII:544321-544908 + 18 1.92e-09 AAAATCTCCG CGACGGGGAATTGAACCCCGATCTGGC ACGCGACAAG chrIX:336043-336640 + 63 1.92e-09 AAAATCTCCG CGACGGGGAATTGAACCCCGATCTGGC ACGCGACAAG chrII:405669-406315 - 58 1.92e-09 AAAATCTCCG CGACGGGGAATTGAACCCCGATCTGGC ACGCGACAAG chrIV:1095089-1095660 + 51 3.73e-09 AAAAATGCGA ACTCTGTGGATCGAACACAGGACCTCC AGATATCTTG chrVIII:115861-116407 + 28 4.15e-09 AAAAATGCTT CCAATCGGATTTGAACCGATGATCTCC ACATTACTAG chrXIII:837699-838239 - 66 5.70e-09 ATATCTCC CGGGGGCGAGTCGAACGCCCGATCTCA AGATTTCGTA chrX:542755-543263 + 2 5.70e-09 C CGGGGGCGAGTCGAACGCCCGATCTCA AGATTTCGTA chrVI:167233-167709 - 73 5.70e-09 C CGGGGGCGAGTCGAACGCCCGATCTCA AGATTTCGTA chrIV:946132-946657 - 25 5.70e-09 AAAAATCTCC CGGGGGCGAGTCGAACGCCCGATCTCA AGATTTCGTA chrXVI:856731-857153 - 51 7.00e-09 TAAAATGGAC GAGTCCGGAATCGAACCGGAGACCTCT CCCATGCTAA chrX:197179-197444 + 57 7.00e-09 GAAATTGGAC GAGTCCGGAATCGAACCGGAGACCTCT CCCATGCTAA chrVII:774138-774655 - 44 7.00e-09 AAATTTGGAC GAGTCCGGAATCGAACCGGAGACCTCT CCCATGCTAA chrIV:568695-569283 - 65 7.00e-09 AATTCTCCG TGACGGGGAATTGAACCCCGATCTGGC ACGCGACAAG chrV:492200-492557 + 29 1.05e-08 TAATCCTTCC CCGCCAGGACTTGAACCTGGAATCTTC TGGTTCGTAG chrIV:619711-620217 + 60 1.05e-08 AAAATCTTCC CCGCCAGGACTTGAACCTGGAATCTTC TGGTTCGTAG chrII:347368-347939 + 55 1.28e-08 GGACGGTTGT CCGCGCGAGTTCGAACCTCGCATCCTT CAGTAATATT chrII:9374-9995 + 4 1.28e-08 TGT CCGCGCGAGTTCGAACCTCGCATCCTT CAGTATTTTT chrXVI:622299-622835 + 28 1.41e-08 ATAAATGCGA ATTCTGTGGATCGAACACAGGACCTCC AGATAACTTG chrXII:604931-605640 + 70 1.41e-08 GAAAGTGCTC GAGGTGGGGATTGAACCCACGACGGTC GCGT chrVIII:358151-358798 + 59 1.41e-08 AAATATGCGA ATTCTGTGGATCGAACACAGGACCTCC AGATAACTTG chrVII:440367-441110 + 33 1.41e-08 TATTATGCGA ATTCTGTGGATCGAACACAGGACCTCC AGATAACTTG chrXI:302694-303249 - 71 6.60e-08 AAA CGGACAGGAATTGAACCTGCAACCCTT CGATTGCAAT chrX:415597-416245 + 65 6.60e-08 TAAATTGAAA CGGACAGGAATTGAACCTGCAACCCTT CGATTGCAA chrVII:287052-287708 + 25 6.60e-08 AAAAATGAAA CGGACAGGAATTGAACCTGCAACCCTT CGATTGCAAT chrVIII:466793-467309 - 29 7.18e-08 TATAATGCCA CCTGCCAGAATTGAACTAGCGACCTTT GCATTACAAG chrXIV:632389-632869 - 62 1.62e-07 AAAAACGACC CCAGTGAGGGTTGAACTCACGATCTTG CGATTAACAG chrXII:975795-976198 + 42 1.62e-07 ATAAACGACC CCAGTGAGGGTTGAACTCACGATCTTG CGATTAACAG chrXI:74399-74970 - 32 1.62e-07 ATAAGCGACC CCAGTGAGGGTTGAACTCACGATCTTG CGATTAACAG chrVII:730963-731465 - 15 1.62e-07 AAAAACGACC CCAGTGAGGGTTGAACTCACGATCTTG CGATTAACAG chrXIII:258969-259382 - 35 3.21e-07 TGGGCTTTGC CCGCGCAGGTTCGAGTCCTGCAGTTGT CGTTATTTTT chrIV:1305407-1305938 + 62 3.21e-07 GGGCTTTGGC CCGCGCAGGTTCGAGTCCTGCAGTTGT CGTTATTTTT chrIV:980706-981219 - 64 3.21e-07 TGGGCTTTGC CCGCGCAGGTTCGAGTCCTGCAGTTGT CGTTTTTACC chrIV:437540-438154 + 28 3.21e-07 TGGGCTTTGC CCGCGCAGGTTCGAGTCCTGCAGTTGT CGTCATTTTT chrII:226968-227357 + 16 3.21e-07 TGGGCTTTGC CCGCGCAGGTTCGAGTCCTGCAGTTGT CGTTATTTTT chrXVI:744072-744619 - 29 3.71e-07 AATTTTGCCA CCTGTCAGAATTGAACTAACGACCTTT GCATTACAAG chrIII:149708-150199 - 57 4.94e-07 TTTAATAGCG CCGCTCGGTTTCGATCCGAGGACATCA GGGTTATGAG chrXVI:435656-436203 + 19 6.98e-07 AAGAAAGCTC GCACTCAGGATCGAACTAAGGACCAAC AGATTTGCAA chrXV:274474-275007 + 55 1.26e-06 TGGGTTTTAC CTGCGCAGGTTCGAATCCTGTCTGTGA CGCATTTCTT chrVI:191251-191783 - 48 1.26e-06 TGGGTTTTAC CTGCGCAGGTTCGAATCCTGTCTGTGA CGCATTTCTT chrXVI:689384-689882 + 35 3.70e-06 TGGGCTCTGC CCGCGCTGGTTCAAATCCTGCTGGTGT CGTATTATTT chrV:288137-288741 - 56 3.70e-06 TGGGCTCTGC CCGCGCTGGTTCAAATCCTGCTGGTGT CGTTTTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVDCSSGGRATCGAACCSVGGACCTYH MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123351-123805 2e-13 53_[+1]_20 chrIV:1075299-1075749 2.2e-11 2_[+1]_71 chrIV:1016947-1017520 2.5e-11 28_[+1]_45 chrXVI:880040-880568 2.9e-11 46_[+1]_27 chrXVI:819321-819854 2.9e-11 33_[-1]_40 chrXIV:569643-570160 2.9e-11 20_[+1]_53 chrXII:1051927-1052222 2.9e-11 51_[+1]_22 chrV:551038-551578 2.9e-11 31_[+1]_42 chrV:442989-443387 2.9e-11 68_[+1]_5 chrII:197238-197835 2.9e-11 49_[-1]_24 chrXIII:586392-586899 5.3e-11 45_[+1]_28 chrVII:823339-823705 5.3e-11 51_[-1]_22 chrVII:412026-412600 5.3e-11 35_[+1]_38 chrV:469260-469750 5.3e-11 43_[-1]_30 chrV:438501-438991 5.3e-11 45_[-1]_28 chrII:326498-327165 8.1e-11 15_[+1]_58 chrXV:281983-282385 1.4e-10 68_[-1]_5 chrXV:226416-226898 1.4e-10 8_[+1]_65 chrX:531551-532237 1.4e-10 22_[-1]_51 chrX:396503-397004 1.4e-10 27_[+1]_46 chrVII:845433-845969 1.4e-10 36_[-1]_37 chrVI:180665-181257 1.4e-10 67_[+1]_6 chrIV:83432-83830 1.4e-10 5_[-1]_68 chrXIII:290545-291210 1.9e-10 13_[-1]_60 chrXII:448500-448856 1.9e-10 26_[+1]_47 chrXI:140643-141413 1.9e-10 44_[+1]_29 chrVII:328367-328967 1.9e-10 5_[-1]_68 chrV:487106-487596 1.9e-10 34_[+1]_39 chrIX:370218-370652 1.9e-10 71_[-1]_2 chrIV:802538-803013 1.9e-10 10_[+1]_63 chrIV:644925-645375 1.9e-10 57_[+1]_16 chrII:644955-645438 1.9e-10 60_[-1]_13 chrIV:1256802-1257291 2.4e-10 16_[+1]_57 chrXII:214693-215064 2.8e-10 59_[+1]_14 chrXV:976270-976694 5.2e-10 29_[-1]_44 chrXIII:808044-808554 5.2e-10 1_[+1]_72 chrXIII:480394-480824 5.2e-10 66_[+1]_7 chrX:422675-423246 5.2e-10 67_[-1]_6 chrX:414744-415265 5.2e-10 52_[-1]_21 chrV:435557-436024 5.2e-10 16_[+1]_57 chrIX:300024-300490 5.2e-10 25_[+1]_48 chrIV:1201534-1202099 5.2e-10 24_[-1]_49 chrIV:1175583-1176136 5.2e-10 60_[-1]_13 chrIII:151020-151607 5.2e-10 25_[+1]_48 chrXV:300880-301495 7.5e-10 29_[-1]_44 chrXIII:195931-196301 7.5e-10 6_[+1]_67 chrXVI:768968-769490 1.1e-09 32_[+1]_41 chrXI:578748-579353 1.1e-09 28_[-1]_45 chrVII:115317-115752 1.1e-09 67_[-1]_6 chrXIV:95998-96531 1.4e-09 31_[+1]_42 chrVII:779412-779926 1.4e-09 36_[-1]_37 chrV:130810-131367 1.4e-09 48_[+1]_25 chrXIII:131598-132099 1.9e-09 31_[+1]_42 chrXII:426900-427484 1.9e-09 29_[-1]_44 chrXI:513128-513613 1.9e-09 16_[+1]_57 chrX:374172-374878 1.9e-09 35_[+1]_38 chrX:204543-205066 1.9e-09 20_[-1]_53 chrVII:544321-544908 1.9e-09 17_[+1]_56 chrIX:336043-336640 1.9e-09 62_[+1]_11 chrII:405669-406315 1.9e-09 57_[-1]_16 chrIV:1095089-1095660 3.7e-09 50_[+1]_23 chrVIII:115861-116407 4.2e-09 27_[+1]_46 chrXIII:837699-838239 5.7e-09 65_[-1]_8 chrX:542755-543263 5.7e-09 1_[+1]_72 chrVI:167233-167709 5.7e-09 72_[-1]_1 chrIV:946132-946657 5.7e-09 24_[-1]_49 chrXVI:856731-857153 7e-09 50_[-1]_23 chrX:197179-197444 7e-09 56_[+1]_17 chrVII:774138-774655 7e-09 43_[-1]_30 chrIV:568695-569283 7e-09 64_[-1]_9 chrV:492200-492557 1e-08 28_[+1]_45 chrIV:619711-620217 1e-08 59_[+1]_14 chrII:347368-347939 1.3e-08 54_[+1]_19 chrII:9374-9995 1.3e-08 3_[+1]_70 chrXVI:622299-622835 1.4e-08 27_[+1]_46 chrXII:604931-605640 1.4e-08 69_[+1]_4 chrVIII:358151-358798 1.4e-08 58_[+1]_15 chrVII:440367-441110 1.4e-08 32_[+1]_41 chrXI:302694-303249 6.6e-08 70_[-1]_3 chrX:415597-416245 6.6e-08 64_[+1]_9 chrVII:287052-287708 6.6e-08 24_[+1]_49 chrVIII:466793-467309 7.2e-08 28_[-1]_45 chrXIV:632389-632869 1.6e-07 61_[-1]_12 chrXII:975795-976198 1.6e-07 41_[+1]_32 chrXI:74399-74970 1.6e-07 31_[-1]_42 chrVII:730963-731465 1.6e-07 14_[-1]_59 chrXIII:258969-259382 3.2e-07 34_[-1]_39 chrIV:1305407-1305938 3.2e-07 61_[+1]_12 chrIV:980706-981219 3.2e-07 63_[-1]_10 chrIV:437540-438154 3.2e-07 27_[+1]_46 chrII:226968-227357 3.2e-07 15_[+1]_58 chrXVI:744072-744619 3.7e-07 28_[-1]_45 chrIII:149708-150199 4.9e-07 56_[-1]_17 chrXVI:435656-436203 7e-07 18_[+1]_55 chrXV:274474-275007 1.3e-06 54_[+1]_19 chrVI:191251-191783 1.3e-06 47_[-1]_26 chrXVI:689384-689882 3.7e-06 34_[+1]_39 chrV:288137-288741 3.7e-06 55_[-1]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVDCSSGGRATCGAACCSVGGACCTYH MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CVDCSSGGRATCGAACCSVGGACCTYH width=27 seqs=98 chrIII:123351-123805 ( 54) GAGCCGGGACTCGAACCCGGGACCTCC 1 chrIV:1075299-1075749 ( 3) CAACCGAGGATCGAACTCGGGACCTTT 1 chrIV:1016947-1017520 ( 29) AAGCGGGGAGTCGAACCCCGGTCTCCA 1 chrXVI:880040-880568 ( 47) TCTAGCGGGATCGAACCGCTGATCCCC 1 chrXVI:819321-819854 ( 34) TCTAGCGGGATCGAACCGCTGATCCCC 1 chrXIV:569643-570160 ( 21) TCTAGCGGGATCGAACCGCTGATCCCC 1 chrXII:1051927-1052222 ( 52) TCTAGCGGGATCGAACCGCTGATCCCC 1 chrV:551038-551578 ( 32) TCTAGCGGGATCGAACCGCTGATCCCC 1 chrV:442989-443387 ( 69) TCTAGCGGGATCGAACCGCTGATCCCC 1 chrII:197238-197835 ( 50) TCTAGCGGGATCGAACCGCTGATCCCC 1 chrXIII:586392-586899 ( 46) TCGCCCAGGATCGAACTGGGGACGTTC 1 chrVII:823339-823705 ( 52) TCGCCCAGGATCGAACTGGGGACGTTC 1 chrVII:412026-412600 ( 36) TCGCCCAGGATCGAACTGGGGACGTTC 1 chrV:469260-469750 ( 44) TCGCCCAGGATCGAACTGGGGACGTTC 1 chrV:438501-438991 ( 46) TCGCCCAGGATCGAACTGGGGACGTTC 1 chrII:326498-327165 ( 16) CAACCGAGGTTCGAACTCGGGATCTTC 1 chrXV:281983-282385 ( 69) AAGCCCGGAATCGAACCGGGGGCCCAA 1 chrXV:226416-226898 ( 9) AAGCCCGGAATCGAACCGGGGGCCCAA 1 chrX:531551-532237 ( 23) AAGCCCGGAATCGAACCGGGGGCCCAA 1 chrX:396503-397004 ( 28) AAGCCCGGAATCGAACCGGGGGCCCAA 1 chrVII:845433-845969 ( 37) AAGCCCGGAATCGAACCGGGGGCCCAA 1 chrVI:180665-181257 ( 68) AAGCCCGGAATCGAACCGGGGGCCCAA 1 chrIV:83432-83830 ( 6) AAGCCCGGAATCGAACCGGGGGCCCAA 1 chrXIII:290545-291210 ( 14) ATACGGGGAGTCGAACCCCGGTCTCCA 1 chrXII:448500-448856 ( 27) CTACCCGGATTCGAACCGGGGTTGTCC 1 chrXI:140643-141413 ( 45) ATACGGGGAGTCGAACCCCGGTCTCCA 1 chrVII:328367-328967 ( 6) ATACGGGGAGTCGAACCCCGGTCTCCA 1 chrV:487106-487596 ( 35) ATACGGGGAGTCGAACCCCGGTCTCCA 1 chrIX:370218-370652 ( 72) ATACGGGGAGTCGAACCCCGGTCTCCA 1 chrIV:802538-803013 ( 11) CTACCCGGATTCGAACCGGGGTTGTCC 1 chrIV:644925-645375 ( 58) CTACCCGGATTCGAACCGGGGTTGTCC 1 chrII:644955-645438 ( 61) ATACGGGGAGTCGAACCCCGGTCTCCA 1 chrIV:1256802-1257291 ( 17) AAGCCGGGAATCGAACCCGGGCCCCAT 1 chrXII:214693-215064 ( 60) GCAACCGGAATCGAACCGATGACCTCT 1 chrXV:976270-976694 ( 30) CAGGGGAGGTTCGAACTCTCGACCTTC 1 chrXIII:808044-808554 ( 2) CCACCCGGATTCGAACTGGGGTTGTTC 1 chrXIII:480394-480824 ( 67) TGTAGGGGGCTCGAACCCCTAACCTTA 1 chrX:422675-423246 ( 68) CAGGGGAGGTTCGAACTCTCGACCTTC 1 chrX:414744-415265 ( 53) TGTAGGGGGCTCGAACCCCTAACCTTA 1 chrV:435557-436024 ( 17) TGTAGGGGGCTCGAACCCCTAACCTTA 1 chrIX:300024-300490 ( 26) TGTAGGGGGCTCGAACCCCTAACCTTA 1 chrIV:1201534-1202099 ( 25) TGTAGGGGGCTCGAACCCCTAACCTTA 1 chrIV:1175583-1176136 ( 61) CAGGGGAGGTTCGAACTCTCGACCTTC 1 chrIII:151020-151607 ( 26) TGTAGGGGGCTCGAACCCCTAACCTTA 1 chrXV:300880-301495 ( 30) GAGCTGGGAATTGAACCCAGGGCCTCT 1 chrXIII:195931-196301 ( 7) GAGCTGGGAATTGAACCCAGGGCCTCT 1 chrXVI:768968-769490 ( 33) CATAGGGGGCTCGAACCCCTGACATTT 1 chrXI:578748-579353 ( 29) CATAGGGGGCTCGAACCCCTGACATTT 1 chrVII:115317-115752 ( 68) CATAGGGGGCTCGAACCCCTGACATTT 1 chrXIV:95998-96531 ( 32) GGTACGAGAATCGAACCCGTGTCCCCA 1 chrVII:779412-779926 ( 37) GGTACGAGAATCGAACCCGTGTCCCCA 1 chrV:130810-131367 ( 49) TTACCCGGATTCGAACCGGGGTTGTTC 1 chrXIII:131598-132099 ( 32) ACGATGGGGGTCGAACCCATAATCTTC 1 chrXII:426900-427484 ( 30) CGACGGGGAATTGAACCCCGATCTGGC 1 chrXI:513128-513613 ( 17) CGACGGGGAATTGAACCCCGATCTGGC 1 chrX:374172-374878 ( 36) ACGATGGGGGTCGAACCCATAATCTTC 1 chrX:204543-205066 ( 21) CGACGGGGAATTGAACCCCGATCTGGC 1 chrVII:544321-544908 ( 18) CGACGGGGAATTGAACCCCGATCTGGC 1 chrIX:336043-336640 ( 63) CGACGGGGAATTGAACCCCGATCTGGC 1 chrII:405669-406315 ( 58) CGACGGGGAATTGAACCCCGATCTGGC 1 chrIV:1095089-1095660 ( 51) ACTCTGTGGATCGAACACAGGACCTCC 1 chrVIII:115861-116407 ( 28) CCAATCGGATTTGAACCGATGATCTCC 1 chrXIII:837699-838239 ( 66) CGGGGGCGAGTCGAACGCCCGATCTCA 1 chrX:542755-543263 ( 2) CGGGGGCGAGTCGAACGCCCGATCTCA 1 chrVI:167233-167709 ( 73) CGGGGGCGAGTCGAACGCCCGATCTCA 1 chrIV:946132-946657 ( 25) CGGGGGCGAGTCGAACGCCCGATCTCA 1 chrXVI:856731-857153 ( 51) GAGTCCGGAATCGAACCGGAGACCTCT 1 chrX:197179-197444 ( 57) GAGTCCGGAATCGAACCGGAGACCTCT 1 chrVII:774138-774655 ( 44) GAGTCCGGAATCGAACCGGAGACCTCT 1 chrIV:568695-569283 ( 65) TGACGGGGAATTGAACCCCGATCTGGC 1 chrV:492200-492557 ( 29) CCGCCAGGACTTGAACCTGGAATCTTC 1 chrIV:619711-620217 ( 60) CCGCCAGGACTTGAACCTGGAATCTTC 1 chrII:347368-347939 ( 55) CCGCGCGAGTTCGAACCTCGCATCCTT 1 chrII:9374-9995 ( 4) CCGCGCGAGTTCGAACCTCGCATCCTT 1 chrXVI:622299-622835 ( 28) ATTCTGTGGATCGAACACAGGACCTCC 1 chrXII:604931-605640 ( 70) GAGGTGGGGATTGAACCCACGACGGTC 1 chrVIII:358151-358798 ( 59) ATTCTGTGGATCGAACACAGGACCTCC 1 chrVII:440367-441110 ( 33) ATTCTGTGGATCGAACACAGGACCTCC 1 chrXI:302694-303249 ( 71) CGGACAGGAATTGAACCTGCAACCCTT 1 chrX:415597-416245 ( 65) CGGACAGGAATTGAACCTGCAACCCTT 1 chrVII:287052-287708 ( 25) CGGACAGGAATTGAACCTGCAACCCTT 1 chrVIII:466793-467309 ( 29) CCTGCCAGAATTGAACTAGCGACCTTT 1 chrXIV:632389-632869 ( 62) CCAGTGAGGGTTGAACTCACGATCTTG 1 chrXII:975795-976198 ( 42) CCAGTGAGGGTTGAACTCACGATCTTG 1 chrXI:74399-74970 ( 32) CCAGTGAGGGTTGAACTCACGATCTTG 1 chrVII:730963-731465 ( 15) CCAGTGAGGGTTGAACTCACGATCTTG 1 chrXIII:258969-259382 ( 35) CCGCGCAGGTTCGAGTCCTGCAGTTGT 1 chrIV:1305407-1305938 ( 62) CCGCGCAGGTTCGAGTCCTGCAGTTGT 1 chrIV:980706-981219 ( 64) CCGCGCAGGTTCGAGTCCTGCAGTTGT 1 chrIV:437540-438154 ( 28) CCGCGCAGGTTCGAGTCCTGCAGTTGT 1 chrII:226968-227357 ( 16) CCGCGCAGGTTCGAGTCCTGCAGTTGT 1 chrXVI:744072-744619 ( 29) CCTGTCAGAATTGAACTAACGACCTTT 1 chrIII:149708-150199 ( 57) CCGCTCGGTTTCGATCCGAGGACATCA 1 chrXVI:435656-436203 ( 19) GCACTCAGGATCGAACTAAGGACCAAC 1 chrXV:274474-275007 ( 55) CTGCGCAGGTTCGAATCCTGTCTGTGA 1 chrVI:191251-191783 ( 48) CTGCGCAGGTTCGAATCCTGTCTGTGA 1 chrXVI:689384-689882 ( 35) CCGCGCTGGTTCAAATCCTGCTGGTGT 1 chrV:288137-288741 ( 56) CCGCGCTGGTTCAAATCCTGCTGGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVDCSSGGRATCGAACCSVGGACCTYH MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 41662 bayes= 9.19831 E= 3.2e-342 -53 131 -76 -60 -34 99 24 -102 -17 -1326 134 -34 -28 159 -41 -334 -1326 83 137 -84 -260 124 140 -1326 -23 -222 174 -234 -392 -1326 237 -1326 66 -1326 140 -492 63 -63 -13 -47 -1326 -1326 -1326 169 -1326 203 -1326 -47 -392 -1326 237 -1326 169 -1326 -1326 -1326 160 -1326 -189 -492 -1326 226 -1326 -176 -293 195 -222 -76 -334 164 69 -212 -76 95 78 -134 -334 -13 159 -47 -60 -105 185 -392 105 -263 -105 -40 -1326 171 -141 -2 -293 169 -31 -68 -492 64 -122 98 -176 95 -22 28 -7 111 -222 -28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVDCSSGGRATCGAACCSVGGACCTYH MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 98 E= 3.2e-342 0.214286 0.469388 0.112245 0.204082 0.244898 0.377551 0.224490 0.153061 0.275510 0.000000 0.479592 0.244898 0.255102 0.571429 0.142857 0.030612 0.000000 0.336735 0.489796 0.173469 0.051020 0.448980 0.500000 0.000000 0.265306 0.040816 0.632653 0.061224 0.020408 0.000000 0.979592 0.000000 0.489796 0.000000 0.500000 0.010204 0.479592 0.122449 0.173469 0.224490 0.000000 0.000000 0.000000 1.000000 0.000000 0.775510 0.000000 0.224490 0.020408 0.000000 0.979592 0.000000 1.000000 0.000000 0.000000 0.000000 0.938776 0.000000 0.051020 0.010204 0.000000 0.908163 0.000000 0.091837 0.040816 0.734694 0.040816 0.183673 0.030612 0.591837 0.306122 0.071429 0.183673 0.367347 0.326531 0.122449 0.030612 0.173469 0.571429 0.224490 0.204082 0.091837 0.683673 0.020408 0.642857 0.030612 0.091837 0.234694 0.000000 0.622449 0.071429 0.306122 0.040816 0.612245 0.153061 0.193878 0.010204 0.295918 0.081633 0.612245 0.091837 0.367347 0.163265 0.377551 0.295918 0.408163 0.040816 0.255102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVDCSSGGRATCGAACCSVGGACCTYH MEME-1 regular expression -------------------------------------------------------------------------------- [CAT][CAG][GAT][CA][GC][GC][GA]G[GA][AT]T[CT]GAACC[CG][CG][GT][GA][AT][CT]C[TC][TC][CAT] -------------------------------------------------------------------------------- Time 308.02 secs. ******************************************************************************** ******************************************************************************** MOTIF TRGYYYAGTKGKTWRAGSSNNCGR MEME-2 width = 24 sites = 75 llr = 1093 E-value = 1.3e-149 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRGYYYAGTKGKTWRAGSSNNCGR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :4:::1a2::::16553::22212 pos.-specific C :::653:::2::2:12:4423622 probability G :6a:21:8:5a51:3164532164 matrix T a::434::a3:5642112133112 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * * * Relative 1.4 * * *** * Entropy 1.2 **** *** * (21.0 bits) 1.0 **** *** ** * * 0.7 ***** *** ** *** * 0.5 ***** ******** *** ** 0.2 ******************* *** 0.0 ------------------------ Multilevel TGGCCTAGTGGGTAAAGCGGTCGG consensus A TTC T TCTGCAGCTC A sequence G T AG C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGYYYAGTKGKTWRAGSSNNCGR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------ chrXIV:602087-602561 + 45 3.72e-11 AATGGTCTCT TGGCCCAGTTGGTTAAGGCACCGT GCTAATAACG chrXIV:569643-570160 - 59 3.72e-11 AGTGGTCTCT TGGCCCAGTTGGTTAAGGCACCGT GCTAATAACG chrV:551038-551578 - 70 3.72e-11 GGTCTCT TGGCCCAGTTGGTTAAGGCACCGT GCTAATAACG chrIX:183297-183707 - 31 3.72e-11 CCTGGTCTCT TGGCCCAGTTGGTTAAGGCACCGT GCTAATAACG chrII:197238-197835 + 15 3.72e-11 CAAGGTCTCT TGGCCCAGTTGGTTAAGGCACCGT GCTAATAACG chrXII:875086-875656 + 62 1.06e-10 TCATCCTTGT TAGCTCAGTTGGTAGAGCGTTCGG CTTTTAAGCG chrVII:115317-115752 + 11 1.06e-10 TCATCCTTGT TAGCTCAGTTGGTAGAGCGTTCGG CTTTTAAGCG chrX:617695-618177 + 40 3.36e-10 AATGGGAGTT TGGCCGAGTGGTTTAAGGCGTCAG ATTTAGGTGG chrXII:962830-963279 - 21 8.10e-10 GACGGAGGGT TGGCCGAGTGGTCTAAGGCGGCAG ACTTAAGATC chrX:424266-424714 - 45 8.10e-10 GATGGAGGGT TGGCCGAGTGGTCTAAGGCGGCAG ACTTAAGATC chrII:347368-347939 + 7 8.10e-10 GAGGGT TGGCCGAGTGGTCTAAGGCGGCAG ACTTAAGATC chrXVI:856731-857153 + 17 9.58e-10 TTCGGGCGTG TGGCGTAGTCGGTAGCGCGCTCCC TTAGCATGGG chrXII:656826-657210 - 8 9.58e-10 ATTGGGCGTG TGGCGTAGTCGGTAGCGCGCTCCC TTAGCAT chrVII:774138-774655 + 10 9.58e-10 TTGGGCGTG TGGCGTAGTCGGTAGCGCGCTCCC TTAGCATGGG chrXV:228051-228615 + 55 9.18e-09 TTAGACTCCA TGGCCAAGTTGGTTAAGGCGTGCG ACTGTTAATC chrXIV:632389-632869 + 27 9.18e-09 AGTGACTCCA TGGCCAAGTTGGTTAAGGCGTGCG ACTGTTAATC chrXII:167765-168232 - 47 9.18e-09 TATGGCAACT TGGCCGAGTGGTTAAGGCGAAAGA TTAGAAATCT chrIV:1305407-1305938 + 15 9.18e-09 TAAGGCAACT TGGCCGAGTGGTTAAGGCGAAAGA TTAGAAATCT chrIII:127573-127885 + 44 9.18e-09 AATGACTCCA TGGCCAAGTTGGTTAAGGCGTGCG ACTGTTAATC chrXV:353902-354307 - 29 2.01e-08 ACTGCTTCTA TGGCCAAGTTGGTAAGGCGCCACA CTAGTAATGT chrVIII:115861-116407 - 65 2.01e-08 AGAGCTTCTA TGGCCAAGTTGGTAAGGCGCCACA CTAGTAATGT chrXIV:374641-375127 + 42 2.28e-08 TAAGCGGACT TAGCTCAGTTGGGAGAGCGCCAGA CTGAAGAAAA chrXI:83968-84445 + 59 2.28e-08 TATGGAGGGT TGGCCGAGTGGTCTAATGCGGCAG ACTTAAGATC chrVIII:237757-238135 - 13 2.28e-08 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCCAGA CTGAAGAAAA chrII:36234-36601 + 38 2.28e-08 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCCAGA CTGAAGAAAA chrXIII:420322-421013 - 14 2.91e-08 ACAGGTTTCG TGGTCTAGTCGGTTATGGCATCTG CTTAACACGC chrX:378186-378566 + 41 2.91e-08 ATAGGTTTCG TGGTCTAGTCGGTTATGGCATCTG CTTAACACGC chrVII:823339-823705 + 17 2.91e-08 AGTGGTTTCG TGGTCTAGTCGGTTATGGCATCTG CTTAACACGC chrVII:412026-412600 - 74 2.91e-08 TCG TGGTCTAGTCGGTTATGGCATCTG CTTAACACGC chrV:469260-469750 + 9 2.91e-08 TGGTTTCG TGGTCTAGTCGGTTATGGCATCTG CTTAACACGC chrV:438501-438991 + 11 2.91e-08 TTAGGTTTCG TGGTCTAGTCGGTTATGGCATCTG CTTAACACGC chrVII:422886-423374 + 19 3.28e-08 AGTGGTTGTT TGGCCGAGCGGTCTAAGGCGCCTG ATTCAAGAAA chrVII:205313-205798 + 23 3.28e-08 AGTGGTTGTT TGGCCGAGCGGTCTAAGGCGCCTG ATTCAAGAAA chrII:326498-327165 - 54 5.85e-08 CCGGGTCCAA TGGTCCAGTGGTTCAAGACGTCGC CTTTACACGG chrXII:373992-374686 + 73 6.54e-08 TTGTTCCTCG TGGCCCAATGGTCACGGCGTCTGG CTAC chrXI:490725-491219 + 53 6.54e-08 TTGTTCCTCG TGGCCCAATGGTCACGGCGTCTGG CTACGAACCA chrX:233698-234204 + 45 6.54e-08 TTGTTCCTCG TGGCCCAATGGTCACGGCGTCTGG CTACGAACCA chrV:492200-492557 - 66 6.54e-08 CTATTCCTCG TGGCCCAATGGTCACGGCGTCTGG CTACGAACCA chrX:414744-415265 + 19 7.30e-08 TTAGCCTTGT TGGCGCAATCGGTAGCGCGTATGA CTCTTAATCA chrV:435557-436024 - 54 7.30e-08 AGAGCCTTGT TGGCGCAATCGGTAGCGCGTATGA CTCTTAATCA chrIX:300024-300490 - 63 7.30e-08 ATAGCCTTGT TGGCGCAATCGGTAGCGCGTATGA CTCTTAATCA chrIII:151020-151607 - 63 7.30e-08 AGAGCCTTGT TGGCGCAATCGGTAGCGCGTATGA CTCTTAATCA chrXIII:808044-808554 - 38 1.52e-07 AAAGGTCCTA TAGTGTAGTGGTTATCACTTTCGG TTCTGATCCG chrXII:448500-448856 - 63 1.52e-07 TCCGGTCCTA TAGTGTAGTGGTTATCACTTTCGG TTTTGATCCG chrIV:802538-803013 - 47 1.52e-07 GTCGGTCCTA TAGTGTAGTGGTTATCACTTTCGG TTTTGATCCG chrIV:520744-521172 + 71 1.52e-07 TAGGGTCCTA TAGTGTAGTGGTTATCACTTTCGG TTTTGA chrII:350579-351052 + 69 1.52e-07 AAGGGTTTTA TAGTGTAGTGGTTATCACTTTCGG TTTTGATC chrXIII:837699-838239 + 16 1.68e-07 TGACTCTCGG TAGCCAAGTTGGTTTAAGGCGCAA GACTGTAATT chrX:542755-543263 - 55 1.68e-07 ATACTCTCGG TAGCCAAGTTGGTTTAAGGCGCAA GACTGTAATT chrX:354003-354461 + 69 1.68e-07 TCACTCTCGG TAGCCAAGTTGGTTTAAGGCGCAA GACTGTAA chrVI:210454-210920 - 40 1.68e-07 CGACTCTCGG TAGCCAAGTTGGTTTAAGGCGCAA GACTGTAATT chrVI:167233-167709 + 23 1.68e-07 CGACTCTCGG TAGCCAAGTTGGTTTAAGGCGCAA GACTGTAATT chrXV:281983-282385 + 37 3.25e-07 AGCGCGCAAG TGGTTTAGTGGTAAAATCCAACGT TGCCATCGTT chrXV:226416-226898 - 44 3.25e-07 TCAGCGCAAG TGGTTTAGTGGTAAAATCCAACGT TGCCATCGTT chrX:396503-397004 - 63 3.25e-07 TAAGCGCAAG TGGTTTAGTGGTAAAATCCAACGT TGCCATCGTT chrVII:845433-845969 + 5 3.25e-07 CAAG TGGTTTAGTGGTAAAATCCAACGT TGCCATCGTT chrX:422675-423246 + 34 3.89e-07 TATGCTTCAG TAGCTCAGTAGGAAGAGCGTCAGT CTCATAATCT chrIV:1175583-1176136 + 27 3.89e-07 AAAGCTTCAG TAGCTCAGTAGGAAGAGCGTCAGT CTCATAATCT chrXI:513128-513613 - 53 4.63e-07 CGTTCCGTGA TAGTTTAATGGTCAGAATGGGCGC TTGTCGCGTG chrX:355180-355756 + 45 4.63e-07 TCTTCCGTGA TAGTTTAATGGTCAGAATGGGCGC TTGTCGCGTG chrVII:544321-544908 - 54 4.63e-07 TCTTCCGTGA TAGTTTAATGGTCAGAATGGGCGC TTGTCGCGTG chrVII:531408-531805 + 61 4.63e-07 ACTTCCGTGA TAGTTTAATGGTCAGAATGGGCGC TTGTCGCGTG chrIV:568695-569283 + 32 4.63e-07 TCTTCCGTGA TAGTTTAATGGTCAGAATGGGCGC TTGTCGCGTG chrII:405669-406315 + 25 4.63e-07 TCTTCCGTGA TAGTTTAATGGTCAGAATGGGCGC TTGTCGCGTG chrXVI:302334-304474 - 32 7.61e-07 GCGTAAGCAG CAGCCCAGTTGGTCAAACCGTGGG TAATACCGTA chrIV:1256802-1257291 - 53 7.61e-07 TTAGCGAAAG TGGTTCAGTGGTTAGAATTCATGC TTCCCAAGCA chrXV:110856-111205 - 23 9.63e-07 CCCGGGCGGT TAGTGTAGTGGTTATCATCCCACC CTTCCAAGGT chrXIV:95998-96531 - 68 9.63e-07 ATGGGCGGT TAGTGTAGTGGTTATCATCCCACC CTTCCAAGGT chrVII:779412-779926 + 4 9.63e-07 GGT TAGTGTAGTGGTTATCATCCCACC CTTCCAAGGT chrVIII:556615-556933 + 33 1.98e-06 GGGAGTGGTA TGGTTGAGTGGGGCAGGGTAACGA GTGGGGAGGT chrIII:63-1029 - 46 2.93e-06 GGGTAAGCGG TAGTGGAGTTGGATACGGGTAATT GGAGGGTAAC chrXIII:195931-196301 - 74 3.53e-06 GTG TGGTCTAGTGGTATGATTCTCGCT TTGGGCGACT chrXIII:302896-303152 - 48 6.55e-06 GTTATTTCCG CGGCGCGGTTGTGAACGTGGGAGG TTCCCCGGAA chrVIII:34399-36323 - 60 9.30e-06 GAAGCTGCTT TGGCTAAGTTGGTTTCTACCATTG ACGCTAACTT chrXV:842418-842908 + 71 1.23e-05 TCTTAGTGTG TAGTTCACTAGTTTTTGGGGTTGG GTTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGYYYAGTKGKTWRAGSSNNCGR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:602087-602561 3.7e-11 44_[+2]_32 chrXIV:569643-570160 3.7e-11 58_[-2]_18 chrV:551038-551578 3.7e-11 69_[-2]_7 chrIX:183297-183707 3.7e-11 30_[-2]_46 chrII:197238-197835 3.7e-11 14_[+2]_62 chrXII:875086-875656 1.1e-10 61_[+2]_15 chrVII:115317-115752 1.1e-10 10_[+2]_66 chrX:617695-618177 3.4e-10 39_[+2]_37 chrXII:962830-963279 8.1e-10 20_[-2]_56 chrX:424266-424714 8.1e-10 44_[-2]_32 chrII:347368-347939 8.1e-10 6_[+2]_70 chrXVI:856731-857153 9.6e-10 16_[+2]_60 chrXII:656826-657210 9.6e-10 7_[-2]_69 chrVII:774138-774655 9.6e-10 9_[+2]_67 chrXV:228051-228615 9.2e-09 54_[+2]_22 chrXIV:632389-632869 9.2e-09 26_[+2]_50 chrXII:167765-168232 9.2e-09 46_[-2]_30 chrIV:1305407-1305938 9.2e-09 14_[+2]_62 chrIII:127573-127885 9.2e-09 43_[+2]_33 chrXV:353902-354307 2e-08 28_[-2]_48 chrVIII:115861-116407 2e-08 64_[-2]_12 chrXIV:374641-375127 2.3e-08 41_[+2]_35 chrXI:83968-84445 2.3e-08 58_[+2]_18 chrVIII:237757-238135 2.3e-08 12_[-2]_64 chrII:36234-36601 2.3e-08 37_[+2]_39 chrXIII:420322-421013 2.9e-08 13_[-2]_63 chrX:378186-378566 2.9e-08 40_[+2]_36 chrVII:823339-823705 2.9e-08 16_[+2]_60 chrVII:412026-412600 2.9e-08 73_[-2]_3 chrV:469260-469750 2.9e-08 8_[+2]_68 chrV:438501-438991 2.9e-08 10_[+2]_66 chrVII:422886-423374 3.3e-08 18_[+2]_58 chrVII:205313-205798 3.3e-08 22_[+2]_54 chrII:326498-327165 5.9e-08 53_[-2]_23 chrXII:373992-374686 6.5e-08 72_[+2]_4 chrXI:490725-491219 6.5e-08 52_[+2]_24 chrX:233698-234204 6.5e-08 44_[+2]_32 chrV:492200-492557 6.5e-08 65_[-2]_11 chrX:414744-415265 7.3e-08 18_[+2]_58 chrV:435557-436024 7.3e-08 53_[-2]_23 chrIX:300024-300490 7.3e-08 62_[-2]_14 chrIII:151020-151607 7.3e-08 62_[-2]_14 chrXIII:808044-808554 1.5e-07 37_[-2]_39 chrXII:448500-448856 1.5e-07 62_[-2]_14 chrIV:802538-803013 1.5e-07 46_[-2]_30 chrIV:520744-521172 1.5e-07 70_[+2]_6 chrII:350579-351052 1.5e-07 68_[+2]_8 chrXIII:837699-838239 1.7e-07 15_[+2]_61 chrX:542755-543263 1.7e-07 54_[-2]_22 chrX:354003-354461 1.7e-07 68_[+2]_8 chrVI:210454-210920 1.7e-07 39_[-2]_37 chrVI:167233-167709 1.7e-07 22_[+2]_54 chrXV:281983-282385 3.3e-07 36_[+2]_40 chrXV:226416-226898 3.3e-07 43_[-2]_33 chrX:396503-397004 3.3e-07 62_[-2]_14 chrVII:845433-845969 3.3e-07 4_[+2]_72 chrX:422675-423246 3.9e-07 33_[+2]_43 chrIV:1175583-1176136 3.9e-07 26_[+2]_50 chrXI:513128-513613 4.6e-07 52_[-2]_24 chrX:355180-355756 4.6e-07 44_[+2]_32 chrVII:544321-544908 4.6e-07 53_[-2]_23 chrVII:531408-531805 4.6e-07 60_[+2]_16 chrIV:568695-569283 4.6e-07 31_[+2]_45 chrII:405669-406315 4.6e-07 24_[+2]_52 chrXVI:302334-304474 7.6e-07 31_[-2]_45 chrIV:1256802-1257291 7.6e-07 52_[-2]_24 chrXV:110856-111205 9.6e-07 22_[-2]_54 chrXIV:95998-96531 9.6e-07 67_[-2]_9 chrVII:779412-779926 9.6e-07 3_[+2]_73 chrVIII:556615-556933 2e-06 32_[+2]_44 chrIII:63-1029 2.9e-06 45_[-2]_31 chrXIII:195931-196301 3.5e-06 73_[-2]_3 chrXIII:302896-303152 6.6e-06 47_[-2]_29 chrVIII:34399-36323 9.3e-06 59_[-2]_17 chrXV:842418-842908 1.2e-05 70_[+2]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGYYYAGTKGKTWRAGSSNNCGR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRGYYYAGTKGKTWRAGSSNNCGR width=24 seqs=75 chrXIV:602087-602561 ( 45) TGGCCCAGTTGGTTAAGGCACCGT 1 chrXIV:569643-570160 ( 59) TGGCCCAGTTGGTTAAGGCACCGT 1 chrV:551038-551578 ( 70) TGGCCCAGTTGGTTAAGGCACCGT 1 chrIX:183297-183707 ( 31) TGGCCCAGTTGGTTAAGGCACCGT 1 chrII:197238-197835 ( 15) TGGCCCAGTTGGTTAAGGCACCGT 1 chrXII:875086-875656 ( 62) TAGCTCAGTTGGTAGAGCGTTCGG 1 chrVII:115317-115752 ( 11) TAGCTCAGTTGGTAGAGCGTTCGG 1 chrX:617695-618177 ( 40) TGGCCGAGTGGTTTAAGGCGTCAG 1 chrXII:962830-963279 ( 21) TGGCCGAGTGGTCTAAGGCGGCAG 1 chrX:424266-424714 ( 45) TGGCCGAGTGGTCTAAGGCGGCAG 1 chrII:347368-347939 ( 7) TGGCCGAGTGGTCTAAGGCGGCAG 1 chrXVI:856731-857153 ( 17) TGGCGTAGTCGGTAGCGCGCTCCC 1 chrXII:656826-657210 ( 8) TGGCGTAGTCGGTAGCGCGCTCCC 1 chrVII:774138-774655 ( 10) TGGCGTAGTCGGTAGCGCGCTCCC 1 chrXV:228051-228615 ( 55) TGGCCAAGTTGGTTAAGGCGTGCG 1 chrXIV:632389-632869 ( 27) TGGCCAAGTTGGTTAAGGCGTGCG 1 chrXII:167765-168232 ( 47) TGGCCGAGTGGTTAAGGCGAAAGA 1 chrIV:1305407-1305938 ( 15) TGGCCGAGTGGTTAAGGCGAAAGA 1 chrIII:127573-127885 ( 44) TGGCCAAGTTGGTTAAGGCGTGCG 1 chrXV:353902-354307 ( 29) TGGCCAAGTTGGTAAGGCGCCACA 1 chrVIII:115861-116407 ( 65) TGGCCAAGTTGGTAAGGCGCCACA 1 chrXIV:374641-375127 ( 42) TAGCTCAGTTGGGAGAGCGCCAGA 1 chrXI:83968-84445 ( 59) TGGCCGAGTGGTCTAATGCGGCAG 1 chrVIII:237757-238135 ( 13) TAGCTCAGTTGGGAGAGCGCCAGA 1 chrII:36234-36601 ( 38) TAGCTCAGTTGGGAGAGCGCCAGA 1 chrXIII:420322-421013 ( 14) TGGTCTAGTCGGTTATGGCATCTG 1 chrX:378186-378566 ( 41) TGGTCTAGTCGGTTATGGCATCTG 1 chrVII:823339-823705 ( 17) TGGTCTAGTCGGTTATGGCATCTG 1 chrVII:412026-412600 ( 74) TGGTCTAGTCGGTTATGGCATCTG 1 chrV:469260-469750 ( 9) TGGTCTAGTCGGTTATGGCATCTG 1 chrV:438501-438991 ( 11) TGGTCTAGTCGGTTATGGCATCTG 1 chrVII:422886-423374 ( 19) TGGCCGAGCGGTCTAAGGCGCCTG 1 chrVII:205313-205798 ( 23) TGGCCGAGCGGTCTAAGGCGCCTG 1 chrII:326498-327165 ( 54) TGGTCCAGTGGTTCAAGACGTCGC 1 chrXII:373992-374686 ( 73) TGGCCCAATGGTCACGGCGTCTGG 1 chrXI:490725-491219 ( 53) TGGCCCAATGGTCACGGCGTCTGG 1 chrX:233698-234204 ( 45) TGGCCCAATGGTCACGGCGTCTGG 1 chrV:492200-492557 ( 66) TGGCCCAATGGTCACGGCGTCTGG 1 chrX:414744-415265 ( 19) TGGCGCAATCGGTAGCGCGTATGA 1 chrV:435557-436024 ( 54) TGGCGCAATCGGTAGCGCGTATGA 1 chrIX:300024-300490 ( 63) TGGCGCAATCGGTAGCGCGTATGA 1 chrIII:151020-151607 ( 63) TGGCGCAATCGGTAGCGCGTATGA 1 chrXIII:808044-808554 ( 38) TAGTGTAGTGGTTATCACTTTCGG 1 chrXII:448500-448856 ( 63) TAGTGTAGTGGTTATCACTTTCGG 1 chrIV:802538-803013 ( 47) TAGTGTAGTGGTTATCACTTTCGG 1 chrIV:520744-521172 ( 71) TAGTGTAGTGGTTATCACTTTCGG 1 chrII:350579-351052 ( 69) TAGTGTAGTGGTTATCACTTTCGG 1 chrXIII:837699-838239 ( 16) TAGCCAAGTTGGTTTAAGGCGCAA 1 chrX:542755-543263 ( 55) TAGCCAAGTTGGTTTAAGGCGCAA 1 chrX:354003-354461 ( 69) TAGCCAAGTTGGTTTAAGGCGCAA 1 chrVI:210454-210920 ( 40) TAGCCAAGTTGGTTTAAGGCGCAA 1 chrVI:167233-167709 ( 23) TAGCCAAGTTGGTTTAAGGCGCAA 1 chrXV:281983-282385 ( 37) TGGTTTAGTGGTAAAATCCAACGT 1 chrXV:226416-226898 ( 44) TGGTTTAGTGGTAAAATCCAACGT 1 chrX:396503-397004 ( 63) TGGTTTAGTGGTAAAATCCAACGT 1 chrVII:845433-845969 ( 5) TGGTTTAGTGGTAAAATCCAACGT 1 chrX:422675-423246 ( 34) TAGCTCAGTAGGAAGAGCGTCAGT 1 chrIV:1175583-1176136 ( 27) TAGCTCAGTAGGAAGAGCGTCAGT 1 chrXI:513128-513613 ( 53) TAGTTTAATGGTCAGAATGGGCGC 1 chrX:355180-355756 ( 45) TAGTTTAATGGTCAGAATGGGCGC 1 chrVII:544321-544908 ( 54) TAGTTTAATGGTCAGAATGGGCGC 1 chrVII:531408-531805 ( 61) TAGTTTAATGGTCAGAATGGGCGC 1 chrIV:568695-569283 ( 32) TAGTTTAATGGTCAGAATGGGCGC 1 chrII:405669-406315 ( 25) TAGTTTAATGGTCAGAATGGGCGC 1 chrXVI:302334-304474 ( 32) CAGCCCAGTTGGTCAAACCGTGGG 1 chrIV:1256802-1257291 ( 53) TGGTTCAGTGGTTAGAATTCATGC 1 chrXV:110856-111205 ( 23) TAGTGTAGTGGTTATCATCCCACC 1 chrXIV:95998-96531 ( 68) TAGTGTAGTGGTTATCATCCCACC 1 chrVII:779412-779926 ( 4) TAGTGTAGTGGTTATCATCCCACC 1 chrVIII:556615-556933 ( 33) TGGTTGAGTGGGGCAGGGTAACGA 1 chrIII:63-1029 ( 46) TAGTGGAGTTGGATACGGGTAATT 1 chrXIII:195931-196301 ( 74) TGGTCTAGTGGTATGATTCTCGCT 1 chrXIII:302896-303152 ( 48) CGGCGCGGTTGTGAACGTGGGAGG 1 chrVIII:34399-36323 ( 60) TGGCTAAGTTGGTTTCTACCATTG 1 chrXV:842418-842908 ( 71) TAGTTCACTAGTTTTTGGGGTTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGYYYAGTKGKTWRAGSSNNCGR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 43351 bayes= 9.35281 E= 1.3e-149 -1287 -283 -1287 165 32 -1287 169 -1287 -1287 -1287 240 -1287 -1287 166 -1287 37 -1287 138 26 -15 -108 81 -37 27 167 -1287 -383 -1287 -73 -383 208 -1287 -1287 -283 -1287 165 -295 -13 130 4 -1287 -1287 240 -1287 -1287 -1287 146 63 -154 17 -151 98 85 -224 -1287 37 55 -183 63 -63 82 34 -66 -173 -15 -1287 172 -173 -354 117 103 -96 -1287 117 134 -173 -37 34 49 -29 -73 63 17 -2 -73 166 -151 -108 -122 -24 160 -122 -45 -2 112 -84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGYYYAGTKGKTWRAGSSNNCGR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 75 E= 1.3e-149 0.000000 0.026667 0.000000 0.973333 0.386667 0.000000 0.613333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.493333 0.226667 0.280000 0.146667 0.333333 0.146667 0.373333 0.986667 0.000000 0.013333 0.000000 0.186667 0.013333 0.800000 0.000000 0.000000 0.026667 0.000000 0.973333 0.040000 0.173333 0.466667 0.320000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.520000 0.480000 0.106667 0.213333 0.066667 0.613333 0.560000 0.040000 0.000000 0.400000 0.453333 0.053333 0.293333 0.200000 0.546667 0.240000 0.120000 0.093333 0.280000 0.000000 0.626667 0.093333 0.026667 0.426667 0.386667 0.160000 0.000000 0.426667 0.480000 0.093333 0.240000 0.240000 0.266667 0.253333 0.186667 0.293333 0.213333 0.306667 0.186667 0.600000 0.066667 0.146667 0.133333 0.160000 0.573333 0.133333 0.226667 0.186667 0.413333 0.173333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGYYYAGTKGKTWRAGSSNNCGR MEME-2 regular expression -------------------------------------------------------------------------------- T[GA]G[CT][CTG][TC]AGT[GT]G[GT][TC][AT][AGT][AC][GA][CG][GC][GTAC][TCG]CG[GA] -------------------------------------------------------------------------------- Time 581.99 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGTGARARCGTGATGTGATAGCCGTTAC MEME-3 width = 29 sites = 9 llr = 339 E-value = 4.1e-058 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGTGARARCGTGATGTGATAGCCGTTAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::97a3:::1a::::a:a::::::a: pos.-specific C a1:::::::9:1::1:::::::aa:1::a probability G :9a:a:3:71a:9::a:a:::a::a:::: matrix T :::a:1:::::9::9:a::a:::::9a:: bits 2.4 * * * * * * **** * 2.2 * * * * * * **** * 1.9 *** * ** * * * **** * 1.7 ***** * ** ** ********** *** Relative 1.4 ***** * ** ** ********** *** Entropy 1.2 ****** ********************** (54.4 bits) 1.0 ***************************** 0.7 ***************************** 0.5 ***************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel CGGTGAAAGCGTGATGTGATAGCCGTTAC consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGARARCGTGATGTGATAGCCGTTAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXVI:209985-210514 + 25 1.15e-18 CCGGTCTCCA CGGTGAAAGCGTGATGTGATAGCCGTTAC ACTATATCGG chrXI:140643-141413 + 72 1.15e-18 CCGGTCTCCA CGGTGAAAGCGTGATGTGATAGCCGTTAC chrV:487106-487596 + 62 1.15e-18 CCGGTCTCCA CGGTGAAAGCGTGATGTGATAGCCGTTAC ACTATATCGG chrIX:370218-370652 - 43 1.15e-18 CCGGTCTCCA CGGTGAAAGCGTGATGTGATAGCCGTTAC ACTATATCGG chrIII:82392-82681 + 8 1.15e-18 GTCTCCA CGGTGAAAGCGTGATGTGATAGCCGTTAC ACTATATCGG chrII:644955-645438 - 32 1.15e-18 CCGGTCTCCA CGGTGAAAGCGTGATGTGATAGCCGTTAC ACTATATCGG chrIX:197336-197836 - 67 4.88e-18 CTCCA CGGTGAGAACGTGATGTGATAGCCGTTAC ACTACATCGG chrIV:1016947-1017520 + 56 4.88e-18 CCGGTCTCCA CGGTGAGAACGTGATGTGATAGCCGTTAC ACTACATCGG chrIV:1075299-1075749 + 31 1.50e-14 GGGACCTTTG CCGTGTGAAGGCAACGTGATAGCCGCTAC ACTATTGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGARARCGTGATGTGATAGCCGTTAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:209985-210514 1.1e-18 24_[+3]_47 chrXI:140643-141413 1.1e-18 71_[+3] chrV:487106-487596 1.1e-18 61_[+3]_10 chrIX:370218-370652 1.1e-18 42_[-3]_29 chrIII:82392-82681 1.1e-18 7_[+3]_64 chrII:644955-645438 1.1e-18 31_[-3]_40 chrIX:197336-197836 4.9e-18 66_[-3]_5 chrIV:1016947-1017520 4.9e-18 55_[+3]_16 chrIV:1075299-1075749 1.5e-14 30_[+3]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGARARCGTGATGTGATAGCCGTTAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGTGARARCGTGATGTGATAGCCGTTAC width=29 seqs=9 chrXVI:209985-210514 ( 25) CGGTGAAAGCGTGATGTGATAGCCGTTAC 1 chrXI:140643-141413 ( 72) CGGTGAAAGCGTGATGTGATAGCCGTTAC 1 chrV:487106-487596 ( 62) CGGTGAAAGCGTGATGTGATAGCCGTTAC 1 chrIX:370218-370652 ( 43) CGGTGAAAGCGTGATGTGATAGCCGTTAC 1 chrIII:82392-82681 ( 8) CGGTGAAAGCGTGATGTGATAGCCGTTAC 1 chrII:644955-645438 ( 32) CGGTGAAAGCGTGATGTGATAGCCGTTAC 1 chrIX:197336-197836 ( 67) CGGTGAGAACGTGATGTGATAGCCGTTAC 1 chrIV:1016947-1017520 ( 56) CGGTGAGAACGTGATGTGATAGCCGTTAC 1 chrIV:1075299-1075749 ( 31) CCGTGTGAAGGCAACGTGATAGCCGCTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGARARCGTGATGTGATAGCCGTTAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 40536 bayes= 12.9848 E= 4.1e-058 -982 240 -982 -982 -982 -77 223 -982 -982 -982 240 -982 -982 -982 -982 169 -982 -982 240 -982 152 -982 -982 -148 110 -982 81 -982 169 -982 -982 -982 10 -982 181 -982 -982 223 -77 -982 -982 -982 240 -982 -982 -77 -982 152 -148 -982 223 -982 169 -982 -982 -982 -982 -77 -982 152 -982 -982 240 -982 -982 -982 -982 169 -982 -982 240 -982 169 -982 -982 -982 -982 -982 -982 169 169 -982 -982 -982 -982 -982 240 -982 -982 240 -982 -982 -982 240 -982 -982 -982 -982 240 -982 -982 -77 -982 152 -982 -982 -982 169 169 -982 -982 -982 -982 240 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGARARCGTGATGTGATAGCCGTTAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 9 E= 4.1e-058 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.888889 0.000000 0.000000 0.111111 0.666667 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.888889 0.111111 0.000000 0.888889 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.888889 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGARARCGTGATGTGATAGCCGTTAC MEME-3 regular expression -------------------------------------------------------------------------------- CGGTGA[AG]A[GA]CGTGATGTGATAGCCGTTAC -------------------------------------------------------------------------------- Time 853.61 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71790-73712 1.33e-01 100 chrI:81921-82334 8.24e-01 100 chrI:138881-139357 3.21e-01 100 chrI:166169-166616 5.00e-01 100 chrI:180945-181516 4.70e-01 100 chrI:182247-183172 4.33e-01 100 chrII:9374-9995 1.43e-05 3_[+1(1.28e-08)]_70 chrII:36234-36601 2.12e-04 37_[+2(2.28e-08)]_39 chrII:44950-45369 6.87e-01 100 chrII:45588-46685 1.42e-01 100 chrII:59517-59686 9.51e-01 100 chrII:59833-61289 7.02e-01 100 chrII:87886-88570 8.19e-01 100 chrII:88959-90122 3.22e-01 100 chrII:165070-165427 1.32e-01 100 chrII:167578-169721 7.59e-01 100 chrII:181315-181630 2.33e-01 100 chrII:197238-197835 1.33e-14 14_[+2(3.72e-11)]_11_[-1(2.92e-11)]_\ 24 chrII:226968-227357 1.10e-03 15_[+1(3.21e-07)]_58 chrII:255079-255677 2.53e-01 100 chrII:266190-266970 5.83e-01 100 chrII:326498-327165 1.36e-12 15_[+1(8.14e-11)]_11_[-2(5.85e-08)]_\ 23 chrII:332168-333178 5.20e-02 100 chrII:347368-347939 3.30e-11 6_[+2(8.10e-10)]_24_[+1(1.28e-08)]_\ 19 chrII:350579-351052 1.17e-03 68_[+2(1.52e-07)]_8 chrII:392996-394735 4.36e-01 100 chrII:405669-406315 4.04e-09 24_[+2(4.63e-07)]_9_[-1(1.92e-09)]_\ 16 chrII:413737-415284 1.22e-01 100 chrII:415507-415876 7.88e-01 100 chrII:477028-477743 1.86e-01 100 chrII:592279-593500 5.35e-02 100 chrII:604059-607129 6.15e-01 100 chrII:642852-643338 4.61e-01 100 chrII:644955-645438 1.91e-21 31_[-3(1.15e-18)]_[-1(1.86e-10)]_13 chrII:680366-682361 6.04e-01 100 chrIII:63-1029 9.51e-03 45_[-2(2.93e-06)]_31 chrIII:30573-30942 9.96e-01 100 chrIII:82392-82681 3.01e-14 7_[+3(1.15e-18)]_64 chrIII:90852-91138 6.90e-01 100 chrIII:107253-107773 5.57e-01 100 chrIII:123351-123805 1.81e-09 53_[+1(2.03e-13)]_20 chrIII:127573-127885 7.67e-05 43_[+2(9.18e-09)]_33 chrIII:142180-142982 9.91e-01 100 chrIII:149708-150199 1.34e-03 56_[-1(4.94e-07)]_17 chrIII:151020-151607 1.92e-10 25_[+1(5.21e-10)]_10_[-2(7.30e-08)]_\ 14 chrIII:162516-163912 4.22e-01 100 chrIII:168010-168543 9.90e-01 100 chrIII:177057-178809 4.03e-01 100 chrIII:227751-228512 5.82e-01 100 chrIII:295311-296040 9.19e-01 100 chrIV:6-313 3.47e-01 100 chrIV:45202-46159 2.77e-01 100 chrIV:83432-83830 1.48e-06 5_[-1(1.42e-10)]_68 chrIV:117140-118240 5.58e-01 100 chrIV:118438-118898 6.07e-01 100 chrIV:125318-126166 6.28e-01 100 chrIV:128904-130982 3.86e-01 100 chrIV:216631-218077 5.59e-01 100 chrIV:221140-222364 3.79e-01 100 chrIV:229462-230754 1.61e-01 100 chrIV:308006-310175 8.26e-01 100 chrIV:321658-321946 6.78e-01 100 chrIV:322205-323589 6.10e-01 100 chrIV:339784-340012 6.50e-01 100 chrIV:340162-341649 9.83e-01 100 chrIV:357899-358450 9.02e-01 100 chrIV:359271-359780 7.05e-02 100 chrIV:382050-384830 1.20e-01 100 chrIV:410186-410787 3.71e-01 100 chrIV:411247-411677 2.43e-01 100 chrIV:411851-412021 4.48e-02 100 chrIV:416943-417318 7.33e-01 100 chrIV:434018-435005 7.94e-01 100 chrIV:437540-438154 1.43e-03 27_[+1(3.21e-07)]_46 chrIV:464959-466765 8.39e-01 100 chrIV:488432-489097 9.13e-01 100 chrIV:490545-491257 3.49e-01 100 chrIV:491453-492752 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