******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--NRG1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:301122-301850 1.0000 100 chrVII:1020108-1021348 1.0000 100 chrXV:12071-12657 1.0000 100 chrVI:191199-191782 1.0000 100 chrXI:146799-147449 1.0000 100 chrI:141595-141920 1.0000 100 chrIV:1278089-1278339 1.0000 100 chrXVI:821638-822237 1.0000 100 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1.0000 100 chrII:167881-169601 1.0000 100 chrIV:619762-620214 1.0000 100 chrXVI:113856-114929 1.0000 100 chrXIII:498965-500772 1.0000 100 chrX:650824-650924 1.0000 100 chrXVI:794464-796152 1.0000 100 chrVIII:379380-380186 1.0000 100 chrXIII:362940-363303 1.0000 100 chrXII:369659-370309 1.0000 100 chrVII:384723-384962 1.0000 100 chrXV:353893-354315 1.0000 100 chrXII:92333-92730 1.0000 100 chrIII:315600-316506 1.0000 100 chrXIII:872579-872911 1.0000 100 chrVIII:48253-49014 1.0000 100 chrVI:180603-181248 1.0000 100 chrVIII:466808-467193 1.0000 100 chrV:270381-270819 1.0000 100 chrXIV:715977-716630 1.0000 100 chrXV:281968-282470 1.0000 100 chrX:355185-355285 1.0000 100 chrIV:974352-974688 1.0000 100 chrXV:638935-639467 1.0000 100 chrIV:45218-46128 1.0000 100 chrXIII:572579-573157 1.0000 100 chrXV:384592-385056 1.0000 100 chrXI:162109-162723 1.0000 100 chrVII:730960-731484 1.0000 100 chrVII:398649-400105 1.0000 100 chrV:266202-268177 1.0000 100 chrIV:591813-592056 1.0000 100 chrXII:448034-448853 1.0000 100 chrVI:105485-107005 1.0000 100 chrXVI:378651-378988 1.0000 100 chrIX:23449-25287 1.0000 100 chrXIV:725712-726339 1.0000 100 chrXI:219624-220116 1.0000 100 chrII:45639-46695 1.0000 100 chrV:491034-491939 1.0000 100 chrIX:314780-315096 1.0000 100 chrXVI:689353-689850 1.0000 100 chrVII:930737-931654 1.0000 100 chrIV:1256815-1257283 1.0000 100 chrIV:1013421-1013937 1.0000 100 chrIV:980734-981168 1.0000 100 chrVI:162009-162392 1.0000 100 chrIV:354800-356948 1.0000 100 chrX:390878-390978 1.0000 100 chrXVI:282126-282966 1.0000 100 chrIX:394340-395440 1.0000 100 chrXIV:302605-303716 1.0000 100 chrXVI:856743-857151 1.0000 100 chrVIII:145286-146465 1.0000 100 chrV:53514-53941 1.0000 100 chrIV:32-315 1.0000 100 chrIV:1359373-1360841 1.0000 100 chrXIII:407856-408909 1.0000 100 chrXIV:88960-89713 1.0000 100 chrIV:359371-359787 1.0000 100 chrXV:977177-978354 1.0000 100 chrXIV:631530-632117 1.0000 100 chrX:378210-378310 1.0000 100 chrXV:423649-424725 1.0000 100 chrIX:325744-326135 1.0000 100 chrII:405604-406220 1.0000 100 chrVII:599345-601107 1.0000 100 chrII:162987-163996 1.0000 100 chrV:288159-288798 1.0000 100 chrVII:397954-398170 1.0000 100 chrVI:224334-225228 1.0000 100 chrIV:722359-722826 1.0000 100 chrXIII:650785-651882 1.0000 100 chrXVI:519974-520527 1.0000 100 chrVIII:374659-375939 1.0000 100 chrXII:808997-809544 1.0000 100 chrIV:490690-492726 1.0000 100 chrX:396596-396696 1.0000 100 chrIV:434099-434978 1.0000 100 chrIII:127586-127891 1.0000 100 chrX:73365-73465 1.0000 100 chrXV:504971-505493 1.0000 100 chrXIV:783520-784321 1.0000 100 chrIV:758770-759645 1.0000 100 chrXII:170066-170641 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--NRG1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--NRG1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--NRG1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.296 C 0.204 G 0.204 T 0.296 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--NRG1/background): A 0.304 C 0.196 G 0.196 T 0.304 ******************************************************************************** ******************************************************************************** MOTIF VRMBSGGRATCGAACCSVGGAYCTYHYGV MEME-1 width = 29 sites = 73 llr = 1404 E-value = 1.5e-276 ******************************************************************************** -------------------------------------------------------------------------------- Motif VRMBSGGRATCGAACCSVGGAYCTYHYGV MEME-1 Description -------------------------------------------------------------------------------- Simplified A 333:12:55:::aa:::2137:1:132:4 pos.-specific C 4:644:::2:8:::a8541::76345432 probability G 251457a52::a::::34671:111:174 matrix T 1212::::2a2::::21:3:2326422:: bits 2.4 * * 2.1 * * * 1.9 * * * 1.6 * * ** * Relative 1.4 * ****** Entropy 1.2 ** ******* * * * (27.8 bits) 0.9 **** ******* * * * 0.7 ****** ******** * *** * 0.5 ******* *************** ** 0.2 ******** ******************** 0.0 ----------------------------- Multilevel CGCGGGGAATCGAACCCCGGACCTTCCGA consensus AAACCA G T GGTATT CCATCG sequence GT T A TA C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRMBSGGRATCGAACCSVGGAYCTYHYGV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIII:123355-123796 + 58 1.04e-15 ATGTGGGGCG AGCCGGGACTCGAACCCGGGACCTCCCGC ACCCTAAGCG chrIV:1016940-1017478 + 54 6.78e-13 GAAACTCCGA AGCGGGGAGTCGAACCCCGGTCTCCACGG TGAGAACGTG chrXV:281968-282470 - 31 7.40e-12 GAAATGCGCA AGCCCGGAATCGAACCGGGGGCCCAACGA TGGCAACGTT chrIV:83434-83830 - 2 7.40e-12 AACTTGCGCA AGCCCGGAATCGAACCGGGGGCCCAACGA T chrX:531560-531660 - 21 7.40e-12 AAACTGCGCA AGCCCGGAATCGAACCGGGGGCCCAACGA TGGCAACGTT chrXVI:572013-572565 - 66 7.40e-12 TGCGCA AGCCCGGAATCGAACCGGGGGCCCAACGA TGGCAACGTT chrV:176902-177457 - 7 1.14e-11 AGTACTCCGA TACGGGGAGTCGAACCCCGGTCTCCACGG TGAAAG chrV:487098-487618 + 29 1.14e-11 AATACTCCGA TACGGGGAGTCGAACCCCGGTCTCCACGG TGAAAGCGTG chrVII:541718-542154 - 1 1.14e-11 AACACTCCGA TACGGGGAGTCGAACCCCGGTCTCCACGG chrXIII:290604-291136 - 18 1.14e-11 AAGACTCCGA TACGGGGAGTCGAACCCCGGTCTCCACGG TGAAAGCGTG chrXIII:195928-196303 + 9 1.74e-11 AAGGGGCG AGCTGGGAATTGAACCCAGGGCCTCTCGC ATGCTTTGTC chrXV:464281-464810 - 22 1.74e-11 AAAAGGGGCG AGCTGGGAATTGAACCCAGGGCCTCTCGC ATGCTTTGTC chrV:551057-551582 + 22 1.99e-11 AAAATGGTCT CTAGCGGGATCGAACCGCTGATCCCCGCG TTATTAGCAC chrXII:1051936-1052222 + 48 1.99e-11 ATAATGGTCT CTAGCGGGATCGAACCGCTGATCCCCGCG TTATTAGCAC chrII:197260-197833 - 37 1.99e-11 AAAATGGTCT CTAGCGGGATCGAACCGCTGATCCCCGCG TTATTAGCAC chrX:378210-378310 - 54 2.99e-11 AAATTGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrXIII:586371-586902 + 56 2.99e-11 AAAATGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrVII:412011-412591 + 49 2.99e-11 AACTTGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrXIII:420278-420882 + 64 2.99e-11 AAAATGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAG chrV:438505-438984 - 45 2.99e-11 AAATTGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrXI:307952-308410 + 19 2.99e-11 AAATTGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrV:435609-436006 + 1 4.42e-11 . GTAGGGGGCTCGAACCCCTAACCTTATGA TTAAGAGTCA chrIX:300006-300499 + 32 4.42e-11 AGATAGCCCT GTAGGGGGCTCGAACCCCTAACCTTATGA TTAAGAGTCA chrIII:151016-151588 + 38 4.42e-11 AGAAAGCCCT GTAGGGGGCTCGAACCCCTAACCTTATGA TTAAGAGTCA chrVI:226429-227010 + 25 4.42e-11 GATAAGCCCT GTAGGGGGCTCGAACCCCTAACCTTATGA TTAAGAGTCA chrX:414790-414890 - 21 4.42e-11 TATTAGCCCT GTAGGGGGCTCGAACCCCTAACCTTATGA TTAAGAGTCA chrXII:214695-215064 + 60 5.71e-11 TAAATGGACG CAACCGGAATCGAACCGATGACCTCTTCC TTGCAAGGGA chrII:405604-406220 - 53 8.30e-11 AAAGCACTCA CGATGGGGGTCGAACCCATAATCTTCTGA TTAGAAGTCA chrX:374196-374296 + 27 8.30e-11 AAAGCACTCA CGATGGGGGTCGAACCCATAATCTTCTGA TTAGAAGTCA chrXIII:131655-132078 + 15 8.30e-11 AAAGCACTCA CGATGGGGGTCGAACCCATAATCTTCTGA TTAGAAGTCA chrXIII:747723-748151 + 11 8.30e-11 AAAACACTCA CGATGGGGGTCGAACCCATAATCTTCTGA TTAGAAGTCA chrXI:578725-579396 - 16 9.38e-11 AGAACTCCTC ATAGGGGGCTCGAACCCCTGACATTTCGG TATCCTTGCT chrXVI:769023-769484 + 10 9.38e-11 GAACTCCTC ATAGGGGGCTCGAACCCCTGACATTTCGG TATCCTTGCT chrVII:115343-115724 - 66 9.38e-11 CTCCTC ATAGGGGGCTCGAACCCCTGACATTTCGG TATCCTTGCT chrXVI:856743-857151 - 43 2.41e-10 AAAATGGACG AGTCCGGAATCGAACCGGAGACCTCTCCC ATGCTAAGGG chrVII:774135-774687 - 26 2.41e-10 AATTTGGACG AGTCCGGAATCGAACCGGAGACCTCTCCC ATGCTAAGGG chrXIII:321011-321324 + 36 2.41e-10 AAAATGGACG AGTCCGGAATCGAACCGGAGACCTCTCCC ATGCTAAGGG chrXI:517783-518230 - 70 2.41e-10 CG AGTCCGGAATCGAACCGGAGACCTCTCCC ATGCTAAGGG chrIII:168119-168541 + 27 4.20e-10 AAAAAGGTCC TACCCGGATTCGAACCGGGGTTGTCCGGA TCAAAACCGA chrII:326580-327096 + 10 4.68e-10 GTTTGATCC AACCGAGGTTCGAACTCGGGATCTTCGCC GTGTAAAGGC chrV:130828-131409 + 20 5.80e-10 AAATAGGTCT TACCCGGATTCGAACCGGGGTTGTTCGGA TCAAAACCGA chrIV:619762-620214 + 37 7.17e-10 AAATCTTCCC CGCCAGGACTTGAACCTGGAATCTTCTGG TTCGTAGCCA chrV:492204-492556 + 28 7.17e-10 AATCCTTCCC CGCCAGGACTTGAACCTGGAATCTTCTGG TTCGTAGCCA chrX:355185-355285 - 62 1.32e-09 AAATCTCCGC GACGGGGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrXI:513118-513600 + 29 1.32e-09 AAATCTCCGC GACGGGGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrXIII:463357-463891 - 17 1.32e-09 AAATCTCCGC GACGGGGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrIX:336071-336612 + 64 1.32e-09 AAATCTCCGC GACGGGGAATTGAACCCCGATCTGGCACG CGACAAGC chrVII:544405-544860 + 1 1.32e-09 . GACGGGGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrX:204544-204644 - 16 1.32e-09 AAATCTCCGC GACGGGGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrXII:426928-427461 - 25 1.32e-09 AATTCTCCGC GACGGGGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrIV:1256815-1257283 + 15 1.96e-09 AAAATGCGGA AGCCGGGAATCGAACCCGGGCCCCATGCT TGGGAAGCAT chrXIV:96053-96512 + 15 2.15e-09 AATTTGAGCG GTACGAGAATCGAACCCGTGTCCCCACCT TGGAAGGGTG chrIV:1095157-1095644 + 26 2.37e-09 AAAATGCGAA CTCTGTGGATCGAACACAGGACCTCCAGA TATCTTGACC chrXIV:104635-105046 - 53 2.86e-09 AATATGCTTC CAATCGGATTTGAACCGATGATCTCCACA TTACTAGTGT chrII:266206-266667 - 30 2.86e-09 AAAATGCTTC CAATCGGATTTGAACCGATGATCTCCACA TTACTAGTGT chrX:415727-415827 + 10 4.53e-09 AATTGAAAC GGACAGGAATTGAACCTGCAACCCTTCGA TTGCAATCTT chrXIII:379025-379621 + 36 4.53e-09 AAATTGAAAC GGACAGGAATTGAACCTGCAACCCTTCGA TTGCAATCTT chrXIII:572579-573157 + 71 8.37e-09 AATGTGCTCC AGGGGAGGTTCGAACTCTCGACCTTCAGA T chrXV:976278-976729 - 6 8.37e-09 ATATTGCTCC AGGGGAGGTTCGAACTCTCGACCTTCAGA TTATG chrXVI:622304-622848 + 20 1.08e-08 TAAATGCGAA TTCTGTGGATCGAACACAGGACCTCCAGA TAACTTGACC chrXIII:837724-838232 - 54 1.62e-08 AATATCTCCC GGGGGCGAGTCGAACGCCCGATCTCAAGA TTTCGTAGTG chrVI:167250-167695 - 69 1.62e-08 CCC GGGGGCGAGTCGAACGCCCGATCTCAAGA TTTCGTAGTG chrX:517648-517748 + 4 3.53e-08 CGC CGCTCGGTTTCGATCCGAGGACATCAGGG TTATGAGCCC chrIII:149703-150193 - 59 3.53e-08 TTAATAGCGC CGCTCGGTTTCGATCCGAGGACATCAGGG TTATGAGCCC chrII:347411-347929 + 39 3.80e-08 GACGGTTGTC CGCGCGAGTTCGAACCTCGCATCCTTCAG TAATATTTTT chrII:9366-9878 + 67 3.80e-08 GACGGTTGTC CGCGCGAGTTCGAACCTCGCATCCTTCAG TATTT chrIV:519658-519956 + 42 4.74e-08 GACGGTTGTC CGCGCGAGTTCGAACCTCGCATCCTTCAA TAACTTATTT chrIII:127586-127891 - 67 5.10e-08 GACCC CAGTGAGGGTTGAACTCACGATCTTGCGA TTAACAGTCG chrVII:730960-731484 - 4 5.10e-08 AAAACGACCC CAGTGAGGGTTGAACTCACGATCTTGCGA TTA chrXII:975755-976186 + 69 5.10e-08 TAAACGACCC CAGTGAGGGTTGAACTCACGATCTTGCGA TTA chrXIII:362940-363303 - 30 7.80e-08 AAAATGCCAT CTCCTAGAATCGAACCAGGGTTTCATCGG CCACAACGAT chrXI:312767-314134 + 7 7.80e-08 TGCCAT CTCCTAGAATCGAACCAGGGTTTCATCGG CCACAACGAT chrXIV:631530-632117 - 72 1.52e-07 . GTCCCGGGTTCGAGTCCCGGCTCGCCCCC ATTGATTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRMBSGGRATCGAACCSVGGAYCTYHYGV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123355-123796 1e-15 57_[+1]_14 chrIV:1016940-1017478 6.8e-13 53_[+1]_18 chrXV:281968-282470 7.4e-12 30_[-1]_41 chrIV:83434-83830 7.4e-12 1_[-1]_70 chrX:531560-531660 7.4e-12 20_[-1]_51 chrXVI:572013-572565 7.4e-12 65_[-1]_6 chrV:176902-177457 1.1e-11 6_[-1]_65 chrV:487098-487618 1.1e-11 28_[+1]_43 chrVII:541718-542154 1.1e-11 [-1]_71 chrXIII:290604-291136 1.1e-11 17_[-1]_54 chrXIII:195928-196303 1.7e-11 8_[+1]_63 chrXV:464281-464810 1.7e-11 21_[-1]_50 chrV:551057-551582 2e-11 21_[+1]_50 chrXII:1051936-1052222 2e-11 47_[+1]_24 chrII:197260-197833 2e-11 36_[-1]_35 chrX:378210-378310 3e-11 53_[-1]_18 chrXIII:586371-586902 3e-11 55_[+1]_16 chrVII:412011-412591 3e-11 48_[+1]_23 chrXIII:420278-420882 3e-11 63_[+1]_8 chrV:438505-438984 3e-11 44_[-1]_27 chrXI:307952-308410 3e-11 18_[+1]_53 chrV:435609-436006 4.4e-11 [+1]_71 chrIX:300006-300499 4.4e-11 31_[+1]_40 chrIII:151016-151588 4.4e-11 37_[+1]_34 chrVI:226429-227010 4.4e-11 24_[+1]_47 chrX:414790-414890 4.4e-11 20_[-1]_51 chrXII:214695-215064 5.7e-11 59_[+1]_12 chrII:405604-406220 8.3e-11 52_[-1]_19 chrX:374196-374296 8.3e-11 26_[+1]_45 chrXIII:131655-132078 8.3e-11 14_[+1]_57 chrXIII:747723-748151 8.3e-11 10_[+1]_61 chrXI:578725-579396 9.4e-11 15_[-1]_56 chrXVI:769023-769484 9.4e-11 9_[+1]_62 chrVII:115343-115724 9.4e-11 65_[-1]_6 chrXVI:856743-857151 2.4e-10 42_[-1]_29 chrVII:774135-774687 2.4e-10 25_[-1]_46 chrXIII:321011-321324 2.4e-10 35_[+1]_36 chrXI:517783-518230 2.4e-10 69_[-1]_2 chrIII:168119-168541 4.2e-10 26_[+1]_45 chrII:326580-327096 4.7e-10 9_[+1]_62 chrV:130828-131409 5.8e-10 19_[+1]_52 chrIV:619762-620214 7.2e-10 36_[+1]_35 chrV:492204-492556 7.2e-10 27_[+1]_44 chrX:355185-355285 1.3e-09 61_[-1]_10 chrXI:513118-513600 1.3e-09 28_[+1]_43 chrXIII:463357-463891 1.3e-09 16_[-1]_55 chrIX:336071-336612 1.3e-09 63_[+1]_8 chrVII:544405-544860 1.3e-09 [+1]_71 chrX:204544-204644 1.3e-09 15_[-1]_56 chrXII:426928-427461 1.3e-09 24_[-1]_47 chrIV:1256815-1257283 2e-09 14_[+1]_57 chrXIV:96053-96512 2.2e-09 14_[+1]_57 chrIV:1095157-1095644 2.4e-09 25_[+1]_46 chrXIV:104635-105046 2.9e-09 52_[-1]_19 chrII:266206-266667 2.9e-09 29_[-1]_42 chrX:415727-415827 4.5e-09 9_[+1]_62 chrXIII:379025-379621 4.5e-09 35_[+1]_36 chrXIII:572579-573157 8.4e-09 70_[+1]_1 chrXV:976278-976729 8.4e-09 5_[-1]_66 chrXVI:622304-622848 1.1e-08 19_[+1]_52 chrXIII:837724-838232 1.6e-08 53_[-1]_18 chrVI:167250-167695 1.6e-08 68_[-1]_3 chrX:517648-517748 3.5e-08 3_[+1]_68 chrIII:149703-150193 3.5e-08 58_[-1]_13 chrII:347411-347929 3.8e-08 38_[+1]_33 chrII:9366-9878 3.8e-08 66_[+1]_5 chrIV:519658-519956 4.7e-08 41_[+1]_30 chrIII:127586-127891 5.1e-08 66_[-1]_5 chrVII:730960-731484 5.1e-08 3_[-1]_68 chrXII:975755-976186 5.1e-08 68_[+1]_3 chrXIII:362940-363303 7.8e-08 29_[-1]_42 chrXI:312767-314134 7.8e-08 6_[+1]_65 chrXIV:631530-632117 1.5e-07 71_[-1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRMBSGGRATCGAACCSVGGAYCTYHYGV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VRMBSGGRATCGAACCSVGGAYCTYHYGV width=29 seqs=73 chrIII:123355-123796 ( 58) AGCCGGGACTCGAACCCGGGACCTCCCGC 1 chrIV:1016940-1017478 ( 54) AGCGGGGAGTCGAACCCCGGTCTCCACGG 1 chrXV:281968-282470 ( 31) AGCCCGGAATCGAACCGGGGGCCCAACGA 1 chrIV:83434-83830 ( 2) AGCCCGGAATCGAACCGGGGGCCCAACGA 1 chrX:531560-531660 ( 21) AGCCCGGAATCGAACCGGGGGCCCAACGA 1 chrXVI:572013-572565 ( 66) AGCCCGGAATCGAACCGGGGGCCCAACGA 1 chrV:176902-177457 ( 7) TACGGGGAGTCGAACCCCGGTCTCCACGG 1 chrV:487098-487618 ( 29) TACGGGGAGTCGAACCCCGGTCTCCACGG 1 chrVII:541718-542154 ( 1) TACGGGGAGTCGAACCCCGGTCTCCACGG 1 chrXIII:290604-291136 ( 18) TACGGGGAGTCGAACCCCGGTCTCCACGG 1 chrXIII:195928-196303 ( 9) AGCTGGGAATTGAACCCAGGGCCTCTCGC 1 chrXV:464281-464810 ( 22) AGCTGGGAATTGAACCCAGGGCCTCTCGC 1 chrV:551057-551582 ( 22) CTAGCGGGATCGAACCGCTGATCCCCGCG 1 chrXII:1051936-1052222 ( 48) CTAGCGGGATCGAACCGCTGATCCCCGCG 1 chrII:197260-197833 ( 37) CTAGCGGGATCGAACCGCTGATCCCCGCG 1 chrX:378210-378310 ( 54) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrXIII:586371-586902 ( 56) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrVII:412011-412591 ( 49) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrXIII:420278-420882 ( 64) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrV:438505-438984 ( 45) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrXI:307952-308410 ( 19) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrV:435609-436006 ( 1) GTAGGGGGCTCGAACCCCTAACCTTATGA 1 chrIX:300006-300499 ( 32) GTAGGGGGCTCGAACCCCTAACCTTATGA 1 chrIII:151016-151588 ( 38) GTAGGGGGCTCGAACCCCTAACCTTATGA 1 chrVI:226429-227010 ( 25) GTAGGGGGCTCGAACCCCTAACCTTATGA 1 chrX:414790-414890 ( 21) GTAGGGGGCTCGAACCCCTAACCTTATGA 1 chrXII:214695-215064 ( 60) CAACCGGAATCGAACCGATGACCTCTTCC 1 chrII:405604-406220 ( 53) CGATGGGGGTCGAACCCATAATCTTCTGA 1 chrX:374196-374296 ( 27) CGATGGGGGTCGAACCCATAATCTTCTGA 1 chrXIII:131655-132078 ( 15) CGATGGGGGTCGAACCCATAATCTTCTGA 1 chrXIII:747723-748151 ( 11) CGATGGGGGTCGAACCCATAATCTTCTGA 1 chrXI:578725-579396 ( 16) ATAGGGGGCTCGAACCCCTGACATTTCGG 1 chrXVI:769023-769484 ( 10) ATAGGGGGCTCGAACCCCTGACATTTCGG 1 chrVII:115343-115724 ( 66) ATAGGGGGCTCGAACCCCTGACATTTCGG 1 chrXVI:856743-857151 ( 43) AGTCCGGAATCGAACCGGAGACCTCTCCC 1 chrVII:774135-774687 ( 26) AGTCCGGAATCGAACCGGAGACCTCTCCC 1 chrXIII:321011-321324 ( 36) AGTCCGGAATCGAACCGGAGACCTCTCCC 1 chrXI:517783-518230 ( 70) AGTCCGGAATCGAACCGGAGACCTCTCCC 1 chrIII:168119-168541 ( 27) TACCCGGATTCGAACCGGGGTTGTCCGGA 1 chrII:326580-327096 ( 10) AACCGAGGTTCGAACTCGGGATCTTCGCC 1 chrV:130828-131409 ( 20) TACCCGGATTCGAACCGGGGTTGTTCGGA 1 chrIV:619762-620214 ( 37) CGCCAGGACTTGAACCTGGAATCTTCTGG 1 chrV:492204-492556 ( 28) CGCCAGGACTTGAACCTGGAATCTTCTGG 1 chrX:355185-355285 ( 62) GACGGGGAATTGAACCCCGATCTGGCACG 1 chrXI:513118-513600 ( 29) GACGGGGAATTGAACCCCGATCTGGCACG 1 chrXIII:463357-463891 ( 17) GACGGGGAATTGAACCCCGATCTGGCACG 1 chrIX:336071-336612 ( 64) GACGGGGAATTGAACCCCGATCTGGCACG 1 chrVII:544405-544860 ( 1) GACGGGGAATTGAACCCCGATCTGGCACG 1 chrX:204544-204644 ( 16) GACGGGGAATTGAACCCCGATCTGGCACG 1 chrXII:426928-427461 ( 25) GACGGGGAATTGAACCCCGATCTGGCACG 1 chrIV:1256815-1257283 ( 15) AGCCGGGAATCGAACCCGGGCCCCATGCT 1 chrXIV:96053-96512 ( 15) GTACGAGAATCGAACCCGTGTCCCCACCT 1 chrIV:1095157-1095644 ( 26) CTCTGTGGATCGAACACAGGACCTCCAGA 1 chrXIV:104635-105046 ( 53) CAATCGGATTTGAACCGATGATCTCCACA 1 chrII:266206-266667 ( 30) CAATCGGATTTGAACCGATGATCTCCACA 1 chrX:415727-415827 ( 10) GGACAGGAATTGAACCTGCAACCCTTCGA 1 chrXIII:379025-379621 ( 36) GGACAGGAATTGAACCTGCAACCCTTCGA 1 chrXIII:572579-573157 ( 71) AGGGGAGGTTCGAACTCTCGACCTTCAGA 1 chrXV:976278-976729 ( 6) AGGGGAGGTTCGAACTCTCGACCTTCAGA 1 chrXVI:622304-622848 ( 20) TTCTGTGGATCGAACACAGGACCTCCAGA 1 chrXIII:837724-838232 ( 54) GGGGGCGAGTCGAACGCCCGATCTCAAGA 1 chrVI:167250-167695 ( 69) GGGGGCGAGTCGAACGCCCGATCTCAAGA 1 chrX:517648-517748 ( 4) CGCTCGGTTTCGATCCGAGGACATCAGGG 1 chrIII:149703-150193 ( 59) CGCTCGGTTTCGATCCGAGGACATCAGGG 1 chrII:347411-347929 ( 39) CGCGCGAGTTCGAACCTCGCATCCTTCAG 1 chrII:9366-9878 ( 67) CGCGCGAGTTCGAACCTCGCATCCTTCAG 1 chrIV:519658-519956 ( 42) CGCGCGAGTTCGAACCTCGCATCCTTCAA 1 chrIII:127586-127891 ( 67) CAGTGAGGGTTGAACTCACGATCTTGCGA 1 chrVII:730960-731484 ( 4) CAGTGAGGGTTGAACTCACGATCTTGCGA 1 chrXII:975755-976186 ( 69) CAGTGAGGGTTGAACTCACGATCTTGCGA 1 chrXIII:362940-363303 ( 30) CTCCTAGAATCGAACCAGGGTTTCATCGG 1 chrXI:312767-314134 ( 7) CTCCTAGAATCGAACCAGGGTTTCATCGG 1 chrXIV:631530-632117 ( 72) GTCCCGGGTTCGAGTCCCGGCTCGCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRMBSGGRATCGAACCSVGGAYCTYHYGV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 8.52447 E= 1.5e-276 -22 102 33 -166 -15 -1283 133 -38 -8 152 -103 -247 -1283 97 107 -56 -247 97 145 -347 -56 -284 192 -347 -289 -1283 229 -1283 78 -1283 121 -347 66 -38 -3 -77 -1283 -1283 -1283 172 -1283 194 -1283 -30 -1283 -1283 235 -1283 172 -1283 -1283 -1283 166 -1283 -384 -347 -1283 233 -1283 -447 -347 199 -284 -89 -347 148 75 -166 -47 102 86 -347 -247 -67 152 -22 -15 -225 180 -1283 111 -284 -125 -38 -1283 175 -1283 17 -215 168 -84 -66 -1283 55 -84 99 -166 92 -103 53 -22 121 -225 -30 -56 112 -67 -30 -289 55 178 -1283 39 16 86 -347 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRMBSGGRATCGAACCSVGGAYCTYHYGV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 73 E= 1.5e-276 0.260274 0.397260 0.246575 0.095890 0.273973 0.000000 0.493151 0.232877 0.287671 0.561644 0.095890 0.054795 0.000000 0.383562 0.410959 0.205479 0.054795 0.383562 0.534247 0.027397 0.205479 0.027397 0.739726 0.027397 0.041096 0.000000 0.958904 0.000000 0.520548 0.000000 0.452055 0.027397 0.479452 0.150685 0.191781 0.178082 0.000000 0.000000 0.000000 1.000000 0.000000 0.753425 0.000000 0.246575 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.958904 0.000000 0.013699 0.027397 0.000000 0.986301 0.000000 0.013699 0.027397 0.780822 0.027397 0.164384 0.027397 0.547945 0.328767 0.095890 0.219178 0.397260 0.356164 0.027397 0.054795 0.123288 0.561644 0.260274 0.273973 0.041096 0.684932 0.000000 0.657534 0.027397 0.082192 0.232877 0.000000 0.657534 0.000000 0.342466 0.068493 0.630137 0.109589 0.191781 0.000000 0.287671 0.109589 0.602740 0.095890 0.369863 0.095890 0.438356 0.260274 0.452055 0.041096 0.246575 0.205479 0.424658 0.123288 0.246575 0.041096 0.287671 0.671233 0.000000 0.397260 0.219178 0.356164 0.027397 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRMBSGGRATCGAACCSVGGAYCTYHYGV MEME-1 regular expression -------------------------------------------------------------------------------- [CAG][GAT][CA][GCT][GC][GA]G[AG]AT[CT]GAACC[CG][CGA][GT][GA][AT][CT]C[TC][TC][CAT][CTA][GC][AGC] -------------------------------------------------------------------------------- Time 353.16 secs. ******************************************************************************** ******************************************************************************** MOTIF DTRGYBYAGTGGKTADVRSSYYMSVYT MEME-2 width = 27 sites = 92 llr = 1287 E-value = 1.8e-171 ******************************************************************************** -------------------------------------------------------------------------------- Motif DTRGYBYAGTGGKTADVRSSYYMSVYT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:4:::1a3::::26443:1213221: pos.-specific C ::::743::11:11:131532453342 probability G 4:6a:41:7:6a4:133544222531: matrix T 3a::335::92:5632:1124311148 bits 2.4 * * 2.1 * * 1.9 * * 1.6 * * * Relative 1.4 * * * * Entropy 1.2 **** *** * (20.2 bits) 0.9 **** *** * 0.7 ***** ***** * * 0.5 ****** ******** **** ** * 0.2 *************** **** ****** 0.0 --------------------------- Multilevel GTGGCCTAGTGGTTAAAGCGTCCGGTT consensus T A TGC A T GATGCAGCCTACCC sequence A T TG AA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTGGKTADVRSSYYMSVYT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chrXVI:856743-857151 + 11 8.42e-12 ATTCGGGCGT GTGGCGTAGTCGGTAGCGCGCTCCCTT AGCATGGGAG chrXII:656827-657198 - 12 8.42e-12 AATTGGGCGT GTGGCGTAGTCGGTAGCGCGCTCCCTT AGCATGGGAG chrXIII:321011-321324 - 70 8.42e-12 GCGT GTGGCGTAGTCGGTAGCGCGCTCCCTT AGCATGGGAG chrXI:517783-518230 + 38 8.42e-12 CTATGGGCGT GTGGCGTAGTCGGTAGCGCGCTCCCTT AGCATGGGAG chrXV:274481-274968 + 5 5.41e-11 CCCA GTGGCCGAGTGGTTAAGGCGATGCCCT GCTATTTCCT chrIV:359371-359787 + 54 6.71e-11 CTCATCCTTG TTAGCTCAGTTGGTAGAGCGTTCGGCT TTTAAGCGCA chrXVI:769023-769484 - 67 6.71e-11 ATCCTTG TTAGCTCAGTTGGTAGAGCGTTCGGCT TTTAAGCGCA chrVII:115343-115724 + 11 6.71e-11 CTCATCCTTG TTAGCTCAGTTGGTAGAGCGTTCGGCT TTTAAGCGCA chrV:288159-288798 - 64 1.54e-10 GATAGGCACT ATGGCCGAGTGGTTAAGGCGACAGACT TGAAATCTGT chrXVI:689353-689850 + 20 1.54e-10 TTTGGGCACT ATGGCCGAGTGGTTAAGGCGACAGACT TGAAATCTGT chrIV:619762-620214 - 71 9.93e-10 CTC GTGGCCCAATGGTCACGGCGTCTGGCT ACGAACCAGA chrV:492204-492556 - 62 9.93e-10 CCTATTCCTC GTGGCCCAATGGTCACGGCGTCTGGCT ACGAACCAGA chrXI:490771-491190 + 44 9.93e-10 CTTGTTCCTC GTGGCCCAATGGTCACGGCGTCTGGCT ACGAACCAGA chrXII:167788-168250 - 24 1.95e-09 ATATGGCAAC TTGGCCGAGTGGTTAAGGCGAAAGATT AGAAATCTTT chrXIII:259012-259438 - 32 1.95e-09 GTATGGCAAC TTGGCCGAGTGGTTAAGGCGAAAGATT AGAAATCTTT chrIV:1305353-1305904 + 58 1.95e-09 TTAAGGCAAC TTGGCCGAGTGGTTAAGGCGAAAGATT AGAAATCTTT chrXV:353893-354315 - 27 4.31e-09 TACTGCTTCT ATGGCCAAGTTGGTAAGGCGCCACACT AGTAATGTGG chrXIV:104635-105046 + 21 4.31e-09 CTCAGCTTCT ATGGCCAAGTTGGTAAGGCGCCACACT AGTAATGTGG chrVIII:115953-116388 - 27 4.31e-09 TAGAGCTTCT ATGGCCAAGTTGGTAAGGCGCCACACT AGTAATGTGG chrIII:168119-168541 - 60 5.01e-09 TCCTGGTCCT ATAGTGTAGTGGTTATCACTTTCGGTT TTGATCCGGA chrV:130828-131409 - 53 5.01e-09 AAGAGGTTTT ATAGTGTAGTGGTTATCACTTTCGGTT TTGATCCGAA chrIV:802586-802999 - 28 5.01e-09 TGTCGGTCCT ATAGTGTAGTGGTTATCACTTTCGGTT TTGATCCGGA chrIV:520731-521179 + 73 5.01e-09 TTAGGGTCCT ATAGTGTAGTGGTTATCACTTTCGGTT T chrII:350612-351046 + 54 5.01e-09 AAAGGGTTTT ATAGTGTAGTGGTTATCACTTTCGGTT TTGATCCGGA chrXIII:808084-808550 - 18 5.01e-09 AAAAGGTCCT ATAGTGTAGTGGTTATCACTTTCGGTT CTGATCCGAA chrX:617716-617816 + 41 1.38e-08 CAATGGGAGT TTGGCCGAGTGGTTTAAGGCGTCAGAT TTAGGTGGAT chrXII:592317-592866 - 46 1.38e-08 CAATGGGAGT TTGGCCGAGTGGTTTAAGGCGTCAGAT TTAGGTGGAT chrXVI:581866-582271 + 50 2.07e-08 AAGAGCCTTG TTGGCGCAATCGGTAGCGCGTATGACT CTTAATCATA chrV:435609-436006 - 35 2.07e-08 AAGAGCCTTG TTGGCGCAATCGGTAGCGCGTATGACT CTTAATCATA chrIX:300006-300499 - 66 2.07e-08 TAGCCTTG TTGGCGCAATCGGTAGCGCGTATGACT CTTAATCATA chrVI:226429-227010 - 59 2.07e-08 AAATGCCTTG TTGGCGCAATCGGTAGCGCGTATGACT CTTAATCATA chrXIV:602091-602533 + 56 2.36e-08 CAATGGTCTC TTGGCCCAGTTGGTTAAGGCACCGTGC TAATAACGCG chrIX:183304-183695 - 32 2.36e-08 TCCTGGTCTC TTGGCCCAGTTGGTTAAGGCACCGTGC TAATAACGCG chrV:551057-551582 - 57 2.36e-08 TACAGGTCTC TTGGCCCAGTTGGTTAAGGCACCGTGC TAATAACGCG chrII:197260-197833 + 4 2.36e-08 CTC TTGGCCCAGTTGGTTAAGGCACCGTGC TAATAACGCG chrXIV:374644-375115 + 46 3.47e-08 ATAAGCGGAC TTAGCTCAGTTGGGAGAGCGCCAGACT GAAGAAAAAC chrVII:440498-441137 - 8 3.47e-08 ATATGCGGAT TTAGCTCAGTTGGGAGAGCGCCAGACT GAAGAAA chrVI:157846-158198 - 3 3.47e-08 AGAAGCGGAT TTAGCTCAGTTGGGAGAGCGCCAGACT GA chrXV:110864-111195 - 22 4.46e-08 ACCCGGGCGG TTAGTGTAGTGGTTATCATCCCACCCT TCCAAGGTGG chrXIV:96053-96512 - 48 4.46e-08 ACATGGGCGG TTAGTGTAGTGGTTATCATCCCACCCT TCCAAGGTGG chrX:390878-390978 - 27 5.68e-08 TAGTGCTTCA GTAGCTCAGTAGGAAGAGCGTCAGTCT CATAATCTGA chrIV:1175594-1176054 + 61 5.68e-08 CAAAGCTTCA GTAGCTCAGTAGGAAGAGCGTCAGTCT CATAATCTGA chrIV:1075316-1075758 - 25 1.58e-07 TATTGTTCCA ATAGTGTAGCGGCTATCACGTTGCCTT CACACGGCAA chrVIII:466808-467193 + 46 2.17e-07 TTTAGCCTCC TTAGCTTAGTGGTAGAGCGTTGCACTT GTAATGCAAA chrXVI:744084-744557 + 20 2.17e-07 AAAAGCCTCC TTAGCTTAGTGGTAGAGCGTTGCACTT GTAATGCAAA chrVII:661523-661960 + 64 2.17e-07 ATTTGCCTCC TTAGCTTAGTGGTAGAGCGTTGCACTT GTAATGCAAA chrII:9366-9878 + 17 2.17e-07 TCGTGGAGGG TTGGCCGAGTGGTCTAAGGCGGCAGAC TTAAGATCTG chrVII:1004037-1004421 + 43 2.17e-07 GTTTGCCTCC TTAGCTTAGTGGTAGAGCGTTGCACTT GTAATGCAAA chrXII:962829-963271 - 23 2.17e-07 CGACGGAGGG TTGGCCGAGTGGTCTAAGGCGGCAGAC TTAAGATCTG chrX:378210-378310 + 21 2.95e-07 AATAGGTTTC GTGGTCTAGTCGGTTATGGCATCTGCT TAACACGCAG chrV:438505-438984 + 12 2.95e-07 ATTAGGTTTC GTGGTCTAGTCGGTTATGGCATCTGCT TAACACGCAG chrXI:307952-308410 - 54 2.95e-07 AAGTGGTTTC GTGGTCTAGTCGGTTATGGCATCTGCT TAACACGCAG chrIV:1256815-1257283 - 48 3.26e-07 CTTAGCGAAA GTGGTTCAGTGGTTAGAATTCATGCTT CCCAAGCATG chrII:405604-406220 + 22 3.60e-07 AGTAGCTCGC GTGGCGTAATGGCAACGCGTCTGACTT CTAATCAGAA chrXII:92333-92730 + 73 3.60e-07 ATAAGGGCGT GTGGTCTAGTGGTATGATTCTCGCTTT G chrX:374196-374296 - 60 3.60e-07 AGTAGCTCGC GTGGCGTAATGGCAACGCGTCTGACTT CTAATCAGAA chrXIV:546550-547719 + 16 3.60e-07 AATCGGGCGT GTGGTCTAGTGGTATGATTCTCGCTTT GGGCGACTTC chrXIII:131655-132078 - 48 3.60e-07 TTTAGCTCGC GTGGCGTAATGGCAACGCGTCTGACTT CTAATCAGAA chrI:138959-139364 + 47 3.60e-07 GTACGGGCGT GTGGTCTAGTGGTATGATTCTCGCTTT GGGCGACTTC chrXIII:747723-748151 - 44 3.60e-07 ACTAGCTCGC GTGGCGTAATGGCAACGCGTCTGACTT CTAATCAGAA chrVII:422901-423358 + 19 4.80e-07 AAGTGGTTGT TTGGCCGAGCGGTCTAAGGCGCCTGAT TCAAGAAATA chrX:355185-355285 + 31 6.95e-07 TTCTTCCGTG ATAGTTTAATGGTCAGAATGGGCGCTT GTCGCGTGCC chrXI:513118-513600 - 62 6.95e-07 ACGTTCCGTG ATAGTTTAATGGTCAGAATGGGCGCTT GTCGCGTGCC chrVII:544405-544860 - 34 6.95e-07 TTCTTCCGTG ATAGTTTAATGGTCAGAATGGGCGCTT GTCGCGTGCC chrIII:127586-127891 + 34 7.60e-07 AAATGACTCC ATGGCCAAGTTGGTTAAGGCGTGCGAC TGTTAATCGC chrXI:74406-74856 + 49 7.60e-07 ATTAGACTCC ATGGCCAAGTTGGTTAAGGCGTGCGAC TGTTAATCGC chrIX:197346-197803 + 74 1.08e-06 CAAATCCGAT GTAGTGTAACGGCTATCACATCACGTT chrII:326580-327096 - 45 1.08e-06 TCCGGGTCCA ATGGTCCAGTGGTTCAAGACGTCGCCT TTACACGGCG chrX:396596-396696 - 14 1.17e-06 GTAAGCGCAA GTGGTTTAGTGGTAAAATCCAACGTTG CCATCGTTGG chrXV:226456-226885 - 29 1.17e-06 TTCAGCGCAA GTGGTTTAGTGGTAAAATCCAACGTTG CCATCGTTGG chrXVI:572013-572565 + 36 1.17e-06 CTTCGCGCAA GTGGTTTAGTGGTAAAATCCAACGTTG CCATCGTTGG chrX:517648-517748 - 37 1.39e-06 GTTAAGCGCC GTGGCGCAGTGGAAGCGCGCAGGGCTC ATAACCCTGA chrIII:149703-150193 + 28 1.39e-06 GTTGAGCGCC GTGGCGCAGTGGAAGCGCGCAGGGCTC ATAACCCTGA chrXI:83987-84472 + 35 1.50e-06 GTATGGAGGG TTGGCCGAGTGGTCTAATGCGGCAGAC TTAAGATCTG chrIX:370214-370639 + 47 1.63e-06 ATAATCCGAT ATAGTGTAACGGCTATCACATCACGCT TTCACCGTGG chrXVI:210030-210526 - 3 1.63e-06 ATTGTCCGAT ATAGTGTAACGGCTATCACATCACGCT TT chrV:487098-487618 - 62 1.63e-06 TTAATCCGAT ATAGTGTAACGGCTATCACATCACGCT TTCACCGTGG chrX:115799-115899 - 21 1.63e-06 ATAATCCGAT ATAGTGTAACGGCTATCACATCACGCT TTCACCGTGG chrV:354677-355202 + 51 1.63e-06 GTAATCCGAT ATAGTGTAACGGCTATCACATCACGCT TTCACCGTGG chrII:644941-645421 + 42 1.63e-06 ATTATCCGAT ATAGTGTAACGGCTATCACATCACGCT TTCACCGTGG chrXIII:306097-307241 - 15 1.91e-06 ATTCCGGTTT TTGGCTTGTTTGTTTCGGGCTCCGCCT CATCGTCTTA chrVII:878554-879044 - 34 2.42e-06 AGATGAAGCG GTGGCTCAATGGTAGAGCTTTCGACTC CAATTAAATC chrXI:302703-303214 + 16 2.42e-06 AGATGAAGCG GTGGCTCAATGGTAGAGCTTTCGACTC CAATTAAATC chrVII:287174-287763 - 5 2.42e-06 AGATGAAGCG GTGGCTCAATGGTAGAGCTTTCGACTC CAAT chrX:354015-354115 + 53 4.65e-06 ATCACTCTCG GTAGCCAAGTTGGTTTAAGGCGCAAGA CTGTAATTTA chrXIII:837724-838232 + 6 4.65e-06 TCTCG GTAGCCAAGTTGGTTTAAGGCGCAAGA CTGTAATTTA chrX:542778-542878 - 40 4.65e-06 AATACTCTCG GTAGCCAAGTTGGTTTAAGGCGCAAGA CTGTAATTTA chrXI:67796-69192 - 31 4.65e-06 GGCCACGGTT TTAGCGTCGTCGCCTCCGCCGCCTCCT CCGGCGACTC chrVI:167250-167695 + 21 4.65e-06 ACGACTCTCG GTAGCCAAGTTGGTTTAAGGCGCAAGA CTGTAATTTA chrVI:95410-95943 + 31 1.21e-05 GCATGACTGA TTGGTCCGGCCGATAACAGGTGTGCTT GCACCCAGTG chrIII:78-1033 - 35 1.52e-05 AGGGTAAGCG GTAGTGGAGTTGGATACGGGTAATTGG AGGGTAACGG chrVII:845451-846285 - 64 2.23e-05 TTAAAAGCTG GTGGCGCTTCTGGTAGATGGGTCGGGT CACTCAATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTGGKTADVRSSYYMSVYT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:856743-857151 8.4e-12 10_[+2]_63 chrXII:656827-657198 8.4e-12 11_[-2]_62 chrXIII:321011-321324 8.4e-12 69_[-2]_4 chrXI:517783-518230 8.4e-12 37_[+2]_36 chrXV:274481-274968 5.4e-11 4_[+2]_69 chrIV:359371-359787 6.7e-11 53_[+2]_20 chrXVI:769023-769484 6.7e-11 66_[-2]_7 chrVII:115343-115724 6.7e-11 10_[+2]_63 chrV:288159-288798 1.5e-10 63_[-2]_10 chrXVI:689353-689850 1.5e-10 19_[+2]_54 chrIV:619762-620214 9.9e-10 70_[-2]_3 chrV:492204-492556 9.9e-10 61_[-2]_12 chrXI:490771-491190 9.9e-10 43_[+2]_30 chrXII:167788-168250 1.9e-09 23_[-2]_50 chrXIII:259012-259438 1.9e-09 31_[-2]_42 chrIV:1305353-1305904 1.9e-09 57_[+2]_16 chrXV:353893-354315 4.3e-09 26_[-2]_47 chrXIV:104635-105046 4.3e-09 20_[+2]_53 chrVIII:115953-116388 4.3e-09 26_[-2]_47 chrIII:168119-168541 5e-09 59_[-2]_14 chrV:130828-131409 5e-09 52_[-2]_21 chrIV:802586-802999 5e-09 27_[-2]_46 chrIV:520731-521179 5e-09 72_[+2]_1 chrII:350612-351046 5e-09 53_[+2]_20 chrXIII:808084-808550 5e-09 17_[-2]_56 chrX:617716-617816 1.4e-08 40_[+2]_33 chrXII:592317-592866 1.4e-08 45_[-2]_28 chrXVI:581866-582271 2.1e-08 49_[+2]_24 chrV:435609-436006 2.1e-08 34_[-2]_39 chrIX:300006-300499 2.1e-08 65_[-2]_8 chrVI:226429-227010 2.1e-08 58_[-2]_15 chrXIV:602091-602533 2.4e-08 55_[+2]_18 chrIX:183304-183695 2.4e-08 31_[-2]_42 chrV:551057-551582 2.4e-08 56_[-2]_17 chrII:197260-197833 2.4e-08 3_[+2]_70 chrXIV:374644-375115 3.5e-08 45_[+2]_28 chrVII:440498-441137 3.5e-08 7_[-2]_66 chrVI:157846-158198 3.5e-08 2_[-2]_71 chrXV:110864-111195 4.5e-08 21_[-2]_52 chrXIV:96053-96512 4.5e-08 47_[-2]_26 chrX:390878-390978 5.7e-08 26_[-2]_47 chrIV:1175594-1176054 5.7e-08 60_[+2]_13 chrIV:1075316-1075758 1.6e-07 24_[-2]_49 chrVIII:466808-467193 2.2e-07 45_[+2]_28 chrXVI:744084-744557 2.2e-07 19_[+2]_54 chrVII:661523-661960 2.2e-07 63_[+2]_10 chrII:9366-9878 2.2e-07 16_[+2]_57 chrVII:1004037-1004421 2.2e-07 42_[+2]_31 chrXII:962829-963271 2.2e-07 22_[-2]_51 chrX:378210-378310 3e-07 20_[+2]_53 chrV:438505-438984 3e-07 11_[+2]_62 chrXI:307952-308410 3e-07 53_[-2]_20 chrIV:1256815-1257283 3.3e-07 47_[-2]_26 chrII:405604-406220 3.6e-07 21_[+2]_52 chrXII:92333-92730 3.6e-07 72_[+2]_1 chrX:374196-374296 3.6e-07 59_[-2]_14 chrXIV:546550-547719 3.6e-07 15_[+2]_58 chrXIII:131655-132078 3.6e-07 47_[-2]_26 chrI:138959-139364 3.6e-07 46_[+2]_27 chrXIII:747723-748151 3.6e-07 43_[-2]_30 chrVII:422901-423358 4.8e-07 18_[+2]_55 chrX:355185-355285 6.9e-07 30_[+2]_43 chrXI:513118-513600 6.9e-07 61_[-2]_12 chrVII:544405-544860 6.9e-07 33_[-2]_40 chrIII:127586-127891 7.6e-07 33_[+2]_40 chrXI:74406-74856 7.6e-07 48_[+2]_25 chrIX:197346-197803 1.1e-06 73_[+2] chrII:326580-327096 1.1e-06 44_[-2]_29 chrX:396596-396696 1.2e-06 13_[-2]_60 chrXV:226456-226885 1.2e-06 28_[-2]_45 chrXVI:572013-572565 1.2e-06 35_[+2]_38 chrX:517648-517748 1.4e-06 36_[-2]_37 chrIII:149703-150193 1.4e-06 27_[+2]_46 chrXI:83987-84472 1.5e-06 34_[+2]_39 chrIX:370214-370639 1.6e-06 46_[+2]_27 chrXVI:210030-210526 1.6e-06 2_[-2]_71 chrV:487098-487618 1.6e-06 61_[-2]_12 chrX:115799-115899 1.6e-06 20_[-2]_53 chrV:354677-355202 1.6e-06 50_[+2]_23 chrII:644941-645421 1.6e-06 41_[+2]_32 chrXIII:306097-307241 1.9e-06 14_[-2]_59 chrVII:878554-879044 2.4e-06 33_[-2]_40 chrXI:302703-303214 2.4e-06 15_[+2]_58 chrVII:287174-287763 2.4e-06 4_[-2]_69 chrX:354015-354115 4.6e-06 52_[+2]_21 chrXIII:837724-838232 4.6e-06 5_[+2]_68 chrX:542778-542878 4.6e-06 39_[-2]_34 chrXI:67796-69192 4.6e-06 30_[-2]_43 chrVI:167250-167695 4.6e-06 20_[+2]_53 chrVI:95410-95943 1.2e-05 30_[+2]_43 chrIII:78-1033 1.5e-05 34_[-2]_39 chrVII:845451-846285 2.2e-05 63_[-2]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTGGKTADVRSSYYMSVYT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DTRGYBYAGTGGKTADVRSSYYMSVYT width=27 seqs=92 chrXVI:856743-857151 ( 11) GTGGCGTAGTCGGTAGCGCGCTCCCTT 1 chrXII:656827-657198 ( 12) GTGGCGTAGTCGGTAGCGCGCTCCCTT 1 chrXIII:321011-321324 ( 70) GTGGCGTAGTCGGTAGCGCGCTCCCTT 1 chrXI:517783-518230 ( 38) GTGGCGTAGTCGGTAGCGCGCTCCCTT 1 chrXV:274481-274968 ( 5) GTGGCCGAGTGGTTAAGGCGATGCCCT 1 chrIV:359371-359787 ( 54) TTAGCTCAGTTGGTAGAGCGTTCGGCT 1 chrXVI:769023-769484 ( 67) TTAGCTCAGTTGGTAGAGCGTTCGGCT 1 chrVII:115343-115724 ( 11) TTAGCTCAGTTGGTAGAGCGTTCGGCT 1 chrV:288159-288798 ( 64) ATGGCCGAGTGGTTAAGGCGACAGACT 1 chrXVI:689353-689850 ( 20) ATGGCCGAGTGGTTAAGGCGACAGACT 1 chrIV:619762-620214 ( 71) GTGGCCCAATGGTCACGGCGTCTGGCT 1 chrV:492204-492556 ( 62) GTGGCCCAATGGTCACGGCGTCTGGCT 1 chrXI:490771-491190 ( 44) GTGGCCCAATGGTCACGGCGTCTGGCT 1 chrXII:167788-168250 ( 24) TTGGCCGAGTGGTTAAGGCGAAAGATT 1 chrXIII:259012-259438 ( 32) TTGGCCGAGTGGTTAAGGCGAAAGATT 1 chrIV:1305353-1305904 ( 58) TTGGCCGAGTGGTTAAGGCGAAAGATT 1 chrXV:353893-354315 ( 27) ATGGCCAAGTTGGTAAGGCGCCACACT 1 chrXIV:104635-105046 ( 21) ATGGCCAAGTTGGTAAGGCGCCACACT 1 chrVIII:115953-116388 ( 27) ATGGCCAAGTTGGTAAGGCGCCACACT 1 chrIII:168119-168541 ( 60) ATAGTGTAGTGGTTATCACTTTCGGTT 1 chrV:130828-131409 ( 53) ATAGTGTAGTGGTTATCACTTTCGGTT 1 chrIV:802586-802999 ( 28) ATAGTGTAGTGGTTATCACTTTCGGTT 1 chrIV:520731-521179 ( 73) ATAGTGTAGTGGTTATCACTTTCGGTT 1 chrII:350612-351046 ( 54) ATAGTGTAGTGGTTATCACTTTCGGTT 1 chrXIII:808084-808550 ( 18) ATAGTGTAGTGGTTATCACTTTCGGTT 1 chrX:617716-617816 ( 41) TTGGCCGAGTGGTTTAAGGCGTCAGAT 1 chrXII:592317-592866 ( 46) TTGGCCGAGTGGTTTAAGGCGTCAGAT 1 chrXVI:581866-582271 ( 50) TTGGCGCAATCGGTAGCGCGTATGACT 1 chrV:435609-436006 ( 35) TTGGCGCAATCGGTAGCGCGTATGACT 1 chrIX:300006-300499 ( 66) TTGGCGCAATCGGTAGCGCGTATGACT 1 chrVI:226429-227010 ( 59) TTGGCGCAATCGGTAGCGCGTATGACT 1 chrXIV:602091-602533 ( 56) TTGGCCCAGTTGGTTAAGGCACCGTGC 1 chrIX:183304-183695 ( 32) TTGGCCCAGTTGGTTAAGGCACCGTGC 1 chrV:551057-551582 ( 57) TTGGCCCAGTTGGTTAAGGCACCGTGC 1 chrII:197260-197833 ( 4) TTGGCCCAGTTGGTTAAGGCACCGTGC 1 chrXIV:374644-375115 ( 46) TTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrVII:440498-441137 ( 8) TTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrVI:157846-158198 ( 3) TTAGCTCAGTTGGGAGAGCGCCAGACT 1 chrXV:110864-111195 ( 22) TTAGTGTAGTGGTTATCATCCCACCCT 1 chrXIV:96053-96512 ( 48) TTAGTGTAGTGGTTATCATCCCACCCT 1 chrX:390878-390978 ( 27) GTAGCTCAGTAGGAAGAGCGTCAGTCT 1 chrIV:1175594-1176054 ( 61) GTAGCTCAGTAGGAAGAGCGTCAGTCT 1 chrIV:1075316-1075758 ( 25) ATAGTGTAGCGGCTATCACGTTGCCTT 1 chrVIII:466808-467193 ( 46) TTAGCTTAGTGGTAGAGCGTTGCACTT 1 chrXVI:744084-744557 ( 20) TTAGCTTAGTGGTAGAGCGTTGCACTT 1 chrVII:661523-661960 ( 64) TTAGCTTAGTGGTAGAGCGTTGCACTT 1 chrII:9366-9878 ( 17) TTGGCCGAGTGGTCTAAGGCGGCAGAC 1 chrVII:1004037-1004421 ( 43) TTAGCTTAGTGGTAGAGCGTTGCACTT 1 chrXII:962829-963271 ( 23) TTGGCCGAGTGGTCTAAGGCGGCAGAC 1 chrX:378210-378310 ( 21) GTGGTCTAGTCGGTTATGGCATCTGCT 1 chrV:438505-438984 ( 12) GTGGTCTAGTCGGTTATGGCATCTGCT 1 chrXI:307952-308410 ( 54) GTGGTCTAGTCGGTTATGGCATCTGCT 1 chrIV:1256815-1257283 ( 48) GTGGTTCAGTGGTTAGAATTCATGCTT 1 chrII:405604-406220 ( 22) GTGGCGTAATGGCAACGCGTCTGACTT 1 chrXII:92333-92730 ( 73) GTGGTCTAGTGGTATGATTCTCGCTTT 1 chrX:374196-374296 ( 60) GTGGCGTAATGGCAACGCGTCTGACTT 1 chrXIV:546550-547719 ( 16) GTGGTCTAGTGGTATGATTCTCGCTTT 1 chrXIII:131655-132078 ( 48) GTGGCGTAATGGCAACGCGTCTGACTT 1 chrI:138959-139364 ( 47) GTGGTCTAGTGGTATGATTCTCGCTTT 1 chrXIII:747723-748151 ( 44) GTGGCGTAATGGCAACGCGTCTGACTT 1 chrVII:422901-423358 ( 19) TTGGCCGAGCGGTCTAAGGCGCCTGAT 1 chrX:355185-355285 ( 31) ATAGTTTAATGGTCAGAATGGGCGCTT 1 chrXI:513118-513600 ( 62) ATAGTTTAATGGTCAGAATGGGCGCTT 1 chrVII:544405-544860 ( 34) ATAGTTTAATGGTCAGAATGGGCGCTT 1 chrIII:127586-127891 ( 34) ATGGCCAAGTTGGTTAAGGCGTGCGAC 1 chrXI:74406-74856 ( 49) ATGGCCAAGTTGGTTAAGGCGTGCGAC 1 chrIX:197346-197803 ( 74) GTAGTGTAACGGCTATCACATCACGTT 1 chrII:326580-327096 ( 45) ATGGTCCAGTGGTTCAAGACGTCGCCT 1 chrX:396596-396696 ( 14) GTGGTTTAGTGGTAAAATCCAACGTTG 1 chrXV:226456-226885 ( 29) GTGGTTTAGTGGTAAAATCCAACGTTG 1 chrXVI:572013-572565 ( 36) GTGGTTTAGTGGTAAAATCCAACGTTG 1 chrX:517648-517748 ( 37) GTGGCGCAGTGGAAGCGCGCAGGGCTC 1 chrIII:149703-150193 ( 28) GTGGCGCAGTGGAAGCGCGCAGGGCTC 1 chrXI:83987-84472 ( 35) TTGGCCGAGTGGTCTAATGCGGCAGAC 1 chrIX:370214-370639 ( 47) ATAGTGTAACGGCTATCACATCACGCT 1 chrXVI:210030-210526 ( 3) ATAGTGTAACGGCTATCACATCACGCT 1 chrV:487098-487618 ( 62) ATAGTGTAACGGCTATCACATCACGCT 1 chrX:115799-115899 ( 21) ATAGTGTAACGGCTATCACATCACGCT 1 chrV:354677-355202 ( 51) ATAGTGTAACGGCTATCACATCACGCT 1 chrII:644941-645421 ( 42) ATAGTGTAACGGCTATCACATCACGCT 1 chrXIII:306097-307241 ( 15) TTGGCTTGTTTGTTTCGGGCTCCGCCT 1 chrVII:878554-879044 ( 34) GTGGCTCAATGGTAGAGCTTTCGACTC 1 chrXI:302703-303214 ( 16) GTGGCTCAATGGTAGAGCTTTCGACTC 1 chrVII:287174-287763 ( 5) GTGGCTCAATGGTAGAGCTTTCGACTC 1 chrX:354015-354115 ( 53) GTAGCCAAGTTGGTTTAAGGCGCAAGA 1 chrXIII:837724-838232 ( 6) GTAGCCAAGTTGGTTTAAGGCGCAAGA 1 chrX:542778-542878 ( 40) GTAGCCAAGTTGGTTTAAGGCGCAAGA 1 chrXI:67796-69192 ( 31) TTAGCGTCGTCGCCTCCGCCGCCTCCT 1 chrVI:167250-167695 ( 21) GTAGCCAAGTTGGTTTAAGGCGCAAGA 1 chrVI:95410-95943 ( 31) TTGGTCCGGCCGATAACAGGTGTGCTT 1 chrIII:78-1033 ( 35) GTAGTGGAGTTGGATACGGGTAATTGG 1 chrVII:845451-846285 ( 64) GTGGCGCTTCTGGTAGATGGGTCGGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTGGKTADVRSSYYMSVYT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 44400 bayes= 7.62881 E= 1.8e-171 -22 -1317 100 19 -1317 -1317 -1317 172 40 -1317 161 -1317 -1317 -1317 235 -1317 -1317 173 -1317 19 -1317 100 87 -28 -164 63 -47 59 165 -417 -317 -480 -22 -1317 187 -380 -1317 -71 -1317 153 -380 -47 161 -35 -1317 -1317 235 -1317 -322 -47 91 59 -35 -71 -259 100 103 -417 -100 -16 40 -71 41 -48 36 58 53 -322 -16 -47 135 -181 -480 135 87 -122 -200 63 111 -64 -64 22 -37 48 -122 96 -9 0 -28 129 -17 -164 -48 35 125 -222 -56 69 78 -111 -181 96 -85 48 -280 -37 -217 132 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTGGKTADVRSSYYMSVYT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 92 E= 1.8e-171 0.260870 0.000000 0.391304 0.347826 0.000000 0.000000 0.000000 1.000000 0.402174 0.000000 0.597826 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.652174 0.000000 0.347826 0.000000 0.391304 0.358696 0.250000 0.097826 0.304348 0.141304 0.456522 0.956522 0.010870 0.021739 0.010870 0.260870 0.000000 0.717391 0.021739 0.000000 0.119565 0.000000 0.880435 0.021739 0.141304 0.597826 0.239130 0.000000 0.000000 1.000000 0.000000 0.032609 0.141304 0.369565 0.456522 0.239130 0.119565 0.032609 0.608696 0.619565 0.010870 0.097826 0.271739 0.402174 0.119565 0.260870 0.217391 0.391304 0.293478 0.282609 0.032609 0.271739 0.141304 0.500000 0.086957 0.010870 0.500000 0.358696 0.130435 0.076087 0.304348 0.423913 0.195652 0.195652 0.228261 0.152174 0.423913 0.130435 0.380435 0.184783 0.304348 0.250000 0.478261 0.173913 0.097826 0.217391 0.250000 0.467391 0.065217 0.206522 0.315217 0.336957 0.141304 0.086957 0.380435 0.108696 0.423913 0.043478 0.152174 0.043478 0.760870 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTGGKTADVRSSYYMSVYT MEME-2 regular expression -------------------------------------------------------------------------------- [GTA]T[GA]G[CT][CGT][TC]A[GA]T[GT]G[TG][TA][AT][AGT][ACG][GA][CG][GC][TC][CT][CA][GCA][GCA][TC]T -------------------------------------------------------------------------------- Time 671.03 secs. ******************************************************************************** ******************************************************************************** MOTIF TTYTTTTTTTTTTTTTTNKCC MEME-3 width = 21 sites = 70 llr = 792 E-value = 9.1e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTYTTTTTTTTTTTTTTNKCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :11321121:21::11:2:13 pos.-specific C :232:11::2111213:3:66 probability G 311:::::::::::::1232: matrix T 755577889879988693611 bits 2.4 2.1 1.9 1.6 Relative 1.4 * * Entropy 1.2 ** ** * (16.3 bits) 0.9 * *** **** * 0.7 * ************* * * 0.5 * ************** *** 0.2 ***************** *** 0.0 --------------------- Multilevel TTTTTTTTTTTTTTTTTCTCC consensus GCCAA CA C C TGGA sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTTTTTTTTTTTTTNKCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:88960-89713 + 35 2.23e-10 TTCCTTTATT TTCTTTTTTTTTTTTTTCTCA CATCTGTGAC chrIII:142351-142975 - 45 4.72e-10 TATATACTAT TTTTTTTTTTTTTCTTTTTCC CAAATTTTTT chrVI:105485-107005 + 79 5.86e-10 AGGACTTCTC TCTCTTTTTTTTTTTTTGTCC A chrVII:706935-707181 - 30 4.57e-09 TTTTGAAGAT GTTCTTTTTTTTTTTTTGGGC CTCATTACAA chrIV:83434-83830 + 39 2.14e-08 CTTGCGCAAG TTTAATTTTTTTTCTTTTTCC ACATTGTTTT chrVII:771838-772233 + 70 2.51e-08 TTCAGCCGTA TTTTTCTTTTTTTCTTTCGCA CCGTCTGTGG chrXIII:321011-321324 - 13 5.33e-08 TCCGGACTCG TCCATTTTTTATTTTTTTGGC TAACTAACCC chrXIV:568051-568645 - 10 7.12e-08 GAGTATTAAT GCATTTTTTTTTTTTATCTCC AGCATTAAA chrIV:1273835-1274381 - 11 1.08e-07 CCCTTAAAGC GCCTTTTTATTTTTTCTTGGC AAGAGAACCC chrIV:667720-668209 - 77 1.41e-07 AGA GACCATTTTTATTTTTTCTCC TCTATTGTTA chrXI:578725-579396 - 80 2.08e-07 . TTTCATTTTTTTTCTTTAGCA TTGAACGCCG chrVIII:16926-17664 + 10 2.08e-07 TCATAGTTA TTTTTATTTTTATTTCTCTCC GTAAATATGC chrVII:609335-610117 - 44 2.68e-07 GGCCCTTTTT TAGTTCCTTTTTTTTTTCTCC CTCGGTCTGT chrV:225503-225696 - 2 2.68e-07 GGCGACCGCC GGCTTTTTTCTTTCTTTTTCT G chrIX:248522-249352 + 57 3.03e-07 ATTTTTTTTT TTTTATTTTTTTTTTATCGCT TACTGATTAT chrVI:224334-225228 + 41 3.43e-07 ATGCCCATTT TCTATTTCTTTTTCTTTATCC GTGTGTGTAG chrVIII:237367-238133 + 38 3.43e-07 AAATTAACTT TTTTTTTTTTTTTTCCTTGCT GAGCTTTTGA chrXII:704236-704595 + 79 4.36e-07 GTTACACTTT TTTTTTCATTTTTTTTTTTCT T chrVII:648741-649370 - 78 4.90e-07 TC GCCTTCTTTTTATTTTTATCC GAAGATCTTT chrXII:1028182-1028612 + 75 5.51e-07 AAATGTATGG GTCATAATTTTTTTTCTTGCC TTCAA chrX:607903-608003 + 68 5.51e-07 AGATTATTGT TTTTTAATTTTTTTTTTATCA GATGTTGTTC chrXIV:575064-576147 - 54 5.51e-07 ATATAAAGCG GGAATTTTTTTTTTTCTATGC ATTTAGACTG chrXIV:560295-560863 - 58 6.18e-07 TTATTTAAGT GTGATTTTTTTTTTTTTATAA AAGTTATAAT chrXVI:559984-560284 + 47 6.92e-07 AATAATTGGC TCTATTTATTTTTCTTTCTTC AACTTGCAAG chrXIII:362940-363303 + 60 7.74e-07 TTCTAGGAGA TGGCATTTTCTTTTTTTTTCA AAGAAAAGAA chrIX:68254-68507 + 46 9.66e-07 AAGATGTATG GTTTTTCTTTTTTTGTGCTCC GTGTCGATAT chrVI:223237-224154 + 19 1.08e-06 TTTTCCCTTC TCTCTTTTTTTCTTTATATCC TCCACTATAT chrIV:1016940-1017478 - 27 1.08e-06 CGCTTCGGAG TTTCTTTTTTATTTTCTAGAA AAATTCACAT chrX:531560-531660 + 58 1.08e-06 CTTGCGCAGT TTCTTTTCTTTTTTTCTGGAA AATAAGAAAA chrXII:65287-65715 + 79 1.20e-06 TCCTCTGGGC GGCTATTTTTTTTTTTGGTAC C chrVIII:475311-475905 - 61 1.20e-06 ATGCACTTTG TTAAATATTTTTTCTCTCTCC TTCGACATAT chrII:476844-477761 - 75 1.33e-06 CGTAT TTTTTCTTTCTTTTTTGGTGA GCCTAAAAAG chrIV:358010-358492 + 74 1.33e-06 GTACACCAAG GTATTTTTTTTTTTACTTGGC AGATCT chrX:422721-422821 + 4 1.33e-06 GGA GCACATTTTTTTTTTTTGTGA ATTAAACCTC chrXV:677968-679174 + 23 1.48e-06 TGAAATTCTC GTCTTTCTTCCTTTTTTGTAC ATTTACATCT chrXII:214695-215064 - 31 1.64e-06 TGCGTCCATT TATTTTTTACTTTTATTCTCC TTTATTTTTA chrX:414790-414890 + 52 1.64e-06 CCCCCTACAG GGCTAATATTTTTTTCTTGCC CACTTATTCA chrVII:555121-557503 + 21 2.02e-06 TACTAACAAA TTTTTTTATTATTTGTTTTCA ATAGACGTTT chrII:36232-36811 + 37 2.23e-06 GCTAGCATTC TTTTTTTTTTCATTTCTAGGC CTGTTTCTCC chrIV:644902-645365 - 16 2.72e-06 GAACCATCAG TTACTTTTTTTTTTTTTCAGA GAATGTGTGC chrIV:568678-569434 - 60 2.99e-06 TACCTTGCTT TCTATTATTTACTCTTTCTCC TGTACCTGCT chrVIII:103675-105509 + 35 3.30e-06 GGGCCGGAGA TGTTTCTATTCTTTTTTTGCA TAAACAACAG chrIV:434099-434978 + 74 3.62e-06 CTACATAATG TTATTATTTTATCTTCTTTCC TTTTAT chrIV:543370-544005 - 55 4.37e-06 GGGTGTTTTT TCTTTTAATTATTCTCTTGGC AGTGTCATCT chrXVI:879855-880567 - 80 4.37e-06 . TTCAACTTATTTTTTTTGGGA GCACTAGGTT chrIV:76879-77637 + 27 4.37e-06 TTTATGTTTT TCCCTTTATTTTCTTTTTGTC TAAGATACAT chrVII:794127-794567 + 63 5.25e-06 TGTGGATCTG TTCATTTAATATTTTTTATAC GTAACGCAGC chrVI:226429-227010 - 2 5.25e-06 CCCCCTACAG GGCTTATCTCTTTTTTTCTCT A chrIV:1095157-1095644 - 4 5.74e-06 TCCACAGAGT TCGCATTTTTATTTTTTCCCA GTG chrIII:162516-163919 - 77 5.74e-06 CCT TTTTCCATTTATTCTTTTTCC CTTTCAATAG chrXV:384592-385056 + 32 6.28e-06 CTCCGGTTCC GATTTTTTTTTTTTCAGCGCC GTGGTATTTC chrXIII:253349-253739 + 31 8.16e-06 TGACCTAGGT TACTCTTTTCTTTTTCTGGGT GCGGGTAACA chrXVI:821638-822237 + 11 8.89e-06 AAAATTCTGA TTCTTTTTTCTTTCATTCTTT TGTTGTTTTT chrXIII:379025-379621 - 15 9.67e-06 ATTCCTGTCC GTTTCAATTTATTTTTTAGCC CTGTGCTTGA chrXII:808997-809544 - 33 1.05e-05 ACATGACATG GTCTTTCTTTTCTTTTTCGTT AATATTTCTG chrII:347411-347929 + 77 1.14e-05 GTAATATTTT TTTAATATACATTTTCTCTGC CAT chrXIV:738613-740110 - 14 1.24e-05 ATGGCATACC TTTATTATTCTTCTCTTCTCA GCCACGTTAC chrIX:394340-395440 - 9 1.35e-05 TTCAAATTAA GGTTTTTTTCTTCTGTTTTCT TGACAAGA chrXI:74406-74856 - 19 1.46e-05 TGGAGTCTAA TTGCTATATTTTTCTTTGGAA GACAAGATAT chrVII:700427-701267 + 7 1.46e-05 TTAGGA TAGCATTTTTTTTCTATGTAC CAAAAGTATT chrVII:323484-324666 + 21 1.71e-05 GAGTAGCGCA GCGCTTTTTTTTTATTGAGGC CCTTTGCAGA chrXIV:426923-427308 + 71 1.85e-05 CTTTTCTGAG GCCTTCTTTCTTTTCCTGCGC GTCGGTAGA chrXII:793711-797379 + 66 1.99e-05 ACCTTATTTC TTGATTTTATATTTATTCGGA AGCAGCAGCT chrV:99859-100350 - 5 1.99e-05 CAATAACAAA TTCTTCTATCTCTATCTCTCC ATGT chrIV:1361924-1362642 - 18 1.99e-05 AGATTATAAT TCGTATTATCTTCTTCTTTAC CCTCGCCAGC chrIX:370214-370639 - 19 2.50e-05 TATATCGGAT TATAATCTATATTTTTTCTAC TTCGATCTTA chrXV:464281-464810 + 60 3.11e-05 TCGCCCCTTT TATTTTTAATTATTTATTTCC TATTGGTCGG chrIV:1086865-1087395 + 6 3.11e-05 TTGTG TGTATTCTTCCTTTTTGGTCT TTAGTCTCTA chrXV:1053880-1054646 - 45 3.34e-05 AATTTCGCAA TTCATTTTATATTTTTTAATC AAATGAGAAA chrXII:282604-283988 + 75 3.85e-05 GTCGACATTG GTCAAATTATCTTCTCTGTCA GAACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTTTTTTTTTTTTTNKCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:88960-89713 2.2e-10 34_[+3]_45 chrIII:142351-142975 4.7e-10 44_[-3]_35 chrVI:105485-107005 5.9e-10 78_[+3]_1 chrVII:706935-707181 4.6e-09 29_[-3]_50 chrIV:83434-83830 2.1e-08 38_[+3]_41 chrVII:771838-772233 2.5e-08 69_[+3]_10 chrXIII:321011-321324 5.3e-08 12_[-3]_67 chrXIV:568051-568645 7.1e-08 9_[-3]_70 chrIV:1273835-1274381 1.1e-07 10_[-3]_69 chrIV:667720-668209 1.4e-07 76_[-3]_3 chrXI:578725-579396 2.1e-07 79_[-3] chrVIII:16926-17664 2.1e-07 9_[+3]_70 chrVII:609335-610117 2.7e-07 43_[-3]_36 chrV:225503-225696 2.7e-07 1_[-3]_78 chrIX:248522-249352 3e-07 56_[+3]_23 chrVI:224334-225228 3.4e-07 40_[+3]_39 chrVIII:237367-238133 3.4e-07 37_[+3]_42 chrXII:704236-704595 4.4e-07 78_[+3]_1 chrVII:648741-649370 4.9e-07 77_[-3]_2 chrXII:1028182-1028612 5.5e-07 74_[+3]_5 chrX:607903-608003 5.5e-07 67_[+3]_12 chrXIV:575064-576147 5.5e-07 53_[-3]_26 chrXIV:560295-560863 6.2e-07 57_[-3]_22 chrXVI:559984-560284 6.9e-07 46_[+3]_33 chrXIII:362940-363303 7.7e-07 59_[+3]_20 chrIX:68254-68507 9.7e-07 45_[+3]_34 chrVI:223237-224154 1.1e-06 18_[+3]_61 chrIV:1016940-1017478 1.1e-06 26_[-3]_53 chrX:531560-531660 1.1e-06 57_[+3]_22 chrXII:65287-65715 1.2e-06 78_[+3]_1 chrVIII:475311-475905 1.2e-06 60_[-3]_19 chrII:476844-477761 1.3e-06 74_[-3]_5 chrIV:358010-358492 1.3e-06 73_[+3]_6 chrX:422721-422821 1.3e-06 3_[+3]_76 chrXV:677968-679174 1.5e-06 22_[+3]_57 chrXII:214695-215064 1.6e-06 30_[-3]_49 chrX:414790-414890 1.6e-06 51_[+3]_28 chrVII:555121-557503 2e-06 20_[+3]_59 chrII:36232-36811 2.2e-06 36_[+3]_43 chrIV:644902-645365 2.7e-06 15_[-3]_64 chrIV:568678-569434 3e-06 59_[-3]_20 chrVIII:103675-105509 3.3e-06 34_[+3]_45 chrIV:434099-434978 3.6e-06 73_[+3]_6 chrIV:543370-544005 4.4e-06 54_[-3]_25 chrXVI:879855-880567 4.4e-06 79_[-3] chrIV:76879-77637 4.4e-06 26_[+3]_53 chrVII:794127-794567 5.2e-06 62_[+3]_17 chrVI:226429-227010 5.2e-06 1_[-3]_78 chrIV:1095157-1095644 5.7e-06 3_[-3]_76 chrIII:162516-163919 5.7e-06 76_[-3]_3 chrXV:384592-385056 6.3e-06 31_[+3]_48 chrXIII:253349-253739 8.2e-06 30_[+3]_49 chrXVI:821638-822237 8.9e-06 10_[+3]_69 chrXIII:379025-379621 9.7e-06 14_[-3]_65 chrXII:808997-809544 1.1e-05 32_[-3]_47 chrII:347411-347929 1.1e-05 76_[+3]_3 chrXIV:738613-740110 1.2e-05 13_[-3]_66 chrIX:394340-395440 1.3e-05 8_[-3]_71 chrXI:74406-74856 1.5e-05 18_[-3]_61 chrVII:700427-701267 1.5e-05 6_[+3]_73 chrVII:323484-324666 1.7e-05 20_[+3]_59 chrXIV:426923-427308 1.8e-05 70_[+3]_9 chrXII:793711-797379 2e-05 65_[+3]_14 chrV:99859-100350 2e-05 4_[-3]_75 chrIV:1361924-1362642 2e-05 17_[-3]_62 chrIX:370214-370639 2.5e-05 18_[-3]_61 chrXV:464281-464810 3.1e-05 59_[+3]_20 chrIV:1086865-1087395 3.1e-05 5_[+3]_74 chrXV:1053880-1054646 3.3e-05 44_[-3]_35 chrXII:282604-283988 3.8e-05 74_[+3]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTTTTTTTTTTTTTNKCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTYTTTTTTTTTTTTTTNKCC width=21 seqs=70 chrXIV:88960-89713 ( 35) TTCTTTTTTTTTTTTTTCTCA 1 chrIII:142351-142975 ( 45) TTTTTTTTTTTTTCTTTTTCC 1 chrVI:105485-107005 ( 79) TCTCTTTTTTTTTTTTTGTCC 1 chrVII:706935-707181 ( 30) GTTCTTTTTTTTTTTTTGGGC 1 chrIV:83434-83830 ( 39) TTTAATTTTTTTTCTTTTTCC 1 chrVII:771838-772233 ( 70) TTTTTCTTTTTTTCTTTCGCA 1 chrXIII:321011-321324 ( 13) TCCATTTTTTATTTTTTTGGC 1 chrXIV:568051-568645 ( 10) GCATTTTTTTTTTTTATCTCC 1 chrIV:1273835-1274381 ( 11) GCCTTTTTATTTTTTCTTGGC 1 chrIV:667720-668209 ( 77) GACCATTTTTATTTTTTCTCC 1 chrXI:578725-579396 ( 80) TTTCATTTTTTTTCTTTAGCA 1 chrVIII:16926-17664 ( 10) TTTTTATTTTTATTTCTCTCC 1 chrVII:609335-610117 ( 44) TAGTTCCTTTTTTTTTTCTCC 1 chrV:225503-225696 ( 2) GGCTTTTTTCTTTCTTTTTCT 1 chrIX:248522-249352 ( 57) TTTTATTTTTTTTTTATCGCT 1 chrVI:224334-225228 ( 41) TCTATTTCTTTTTCTTTATCC 1 chrVIII:237367-238133 ( 38) TTTTTTTTTTTTTTCCTTGCT 1 chrXII:704236-704595 ( 79) TTTTTTCATTTTTTTTTTTCT 1 chrVII:648741-649370 ( 78) GCCTTCTTTTTATTTTTATCC 1 chrXII:1028182-1028612 ( 75) GTCATAATTTTTTTTCTTGCC 1 chrX:607903-608003 ( 68) TTTTTAATTTTTTTTTTATCA 1 chrXIV:575064-576147 ( 54) GGAATTTTTTTTTTTCTATGC 1 chrXIV:560295-560863 ( 58) GTGATTTTTTTTTTTTTATAA 1 chrXVI:559984-560284 ( 47) TCTATTTATTTTTCTTTCTTC 1 chrXIII:362940-363303 ( 60) TGGCATTTTCTTTTTTTTTCA 1 chrIX:68254-68507 ( 46) GTTTTTCTTTTTTTGTGCTCC 1 chrVI:223237-224154 ( 19) TCTCTTTTTTTCTTTATATCC 1 chrIV:1016940-1017478 ( 27) TTTCTTTTTTATTTTCTAGAA 1 chrX:531560-531660 ( 58) TTCTTTTCTTTTTTTCTGGAA 1 chrXII:65287-65715 ( 79) GGCTATTTTTTTTTTTGGTAC 1 chrVIII:475311-475905 ( 61) TTAAATATTTTTTCTCTCTCC 1 chrII:476844-477761 ( 75) TTTTTCTTTCTTTTTTGGTGA 1 chrIV:358010-358492 ( 74) GTATTTTTTTTTTTACTTGGC 1 chrX:422721-422821 ( 4) GCACATTTTTTTTTTTTGTGA 1 chrXV:677968-679174 ( 23) GTCTTTCTTCCTTTTTTGTAC 1 chrXII:214695-215064 ( 31) TATTTTTTACTTTTATTCTCC 1 chrX:414790-414890 ( 52) GGCTAATATTTTTTTCTTGCC 1 chrVII:555121-557503 ( 21) TTTTTTTATTATTTGTTTTCA 1 chrII:36232-36811 ( 37) TTTTTTTTTTCATTTCTAGGC 1 chrIV:644902-645365 ( 16) TTACTTTTTTTTTTTTTCAGA 1 chrIV:568678-569434 ( 60) TCTATTATTTACTCTTTCTCC 1 chrVIII:103675-105509 ( 35) TGTTTCTATTCTTTTTTTGCA 1 chrIV:434099-434978 ( 74) TTATTATTTTATCTTCTTTCC 1 chrIV:543370-544005 ( 55) TCTTTTAATTATTCTCTTGGC 1 chrXVI:879855-880567 ( 80) TTCAACTTATTTTTTTTGGGA 1 chrIV:76879-77637 ( 27) TCCCTTTATTTTCTTTTTGTC 1 chrVII:794127-794567 ( 63) TTCATTTAATATTTTTTATAC 1 chrVI:226429-227010 ( 2) GGCTTATCTCTTTTTTTCTCT 1 chrIV:1095157-1095644 ( 4) TCGCATTTTTATTTTTTCCCA 1 chrIII:162516-163919 ( 77) TTTTCCATTTATTCTTTTTCC 1 chrXV:384592-385056 ( 32) GATTTTTTTTTTTTCAGCGCC 1 chrXIII:253349-253739 ( 31) TACTCTTTTCTTTTTCTGGGT 1 chrXVI:821638-822237 ( 11) TTCTTTTTTCTTTCATTCTTT 1 chrXIII:379025-379621 ( 15) GTTTCAATTTATTTTTTAGCC 1 chrXII:808997-809544 ( 33) GTCTTTCTTTTCTTTTTCGTT 1 chrII:347411-347929 ( 77) TTTAATATACATTTTCTCTGC 1 chrXIV:738613-740110 ( 14) TTTATTATTCTTCTCTTCTCA 1 chrIX:394340-395440 ( 9) GGTTTTTTTCTTCTGTTTTCT 1 chrXI:74406-74856 ( 19) TTGCTATATTTTTCTTTGGAA 1 chrVII:700427-701267 ( 7) TAGCATTTTTTTTCTATGTAC 1 chrVII:323484-324666 ( 21) GCGCTTTTTTTTTATTGAGGC 1 chrXIV:426923-427308 ( 71) GCCTTCTTTCTTTTCCTGCGC 1 chrXII:793711-797379 ( 66) TTGATTTTATATTTATTCGGA 1 chrV:99859-100350 ( 5) TTCTTCTATCTCTATCTCTCC 1 chrIV:1361924-1362642 ( 18) TCGTATTATCTTCTTCTTTAC 1 chrIX:370214-370639 ( 19) TATAATCTATATTTTTTCTAC 1 chrXV:464281-464810 ( 60) TATTTTTAATTATTTATTTCC 1 chrIV:1086865-1087395 ( 6) TGTATTCTTCCTTTTTGGTCT 1 chrXV:1053880-1054646 ( 45) TTCATTTTATATTTTTTAATC 1 chrXII:282604-283988 ( 75) GTCAAATTATCTTCTCTGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTTTTTTTTTTTTTNKCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.2421 E= 9.1e-040 -1277 -1277 75 114 -141 22 -61 80 -160 68 -61 59 -24 3 -1277 84 -41 -219 -1277 126 -124 -61 -1277 129 -124 -97 -1277 134 -83 -219 -1277 137 -109 -1277 -1277 150 -1277 13 -1277 137 -50 -146 -1277 123 -241 -178 -1277 154 -1277 -146 -1277 161 -341 13 -1277 132 -241 -178 -219 147 -183 47 -1277 108 -1277 -1277 -119 159 -71 75 3 -9 -341 -278 81 98 -109 151 22 -209 -16 158 -1277 -109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTTTTTTTTTTTTTNKCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 70 E= 9.1e-040 0.000000 0.000000 0.328571 0.671429 0.114286 0.228571 0.128571 0.528571 0.100000 0.314286 0.128571 0.457143 0.257143 0.200000 0.000000 0.542857 0.228571 0.042857 0.000000 0.728571 0.128571 0.128571 0.000000 0.742857 0.128571 0.100000 0.000000 0.771429 0.171429 0.042857 0.000000 0.785714 0.142857 0.000000 0.000000 0.857143 0.000000 0.214286 0.000000 0.785714 0.214286 0.071429 0.000000 0.714286 0.057143 0.057143 0.000000 0.885714 0.000000 0.071429 0.000000 0.928571 0.028571 0.214286 0.000000 0.757143 0.057143 0.057143 0.042857 0.842857 0.085714 0.271429 0.000000 0.642857 0.000000 0.000000 0.085714 0.914286 0.185714 0.328571 0.200000 0.285714 0.028571 0.028571 0.342857 0.600000 0.142857 0.557143 0.228571 0.071429 0.271429 0.585714 0.000000 0.142857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTTTTTTTTTTTTTTNKCC MEME-3 regular expression -------------------------------------------------------------------------------- [TG][TC][TC][TAC][TA]TTTT[TC][TA]TT[TC]T[TC]T[CTG][TG][CG][CA] -------------------------------------------------------------------------------- Time 981.67 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:301122-301850 8.70e-01 100 chrVII:1020108-1021348 3.53e-01 100 chrXV:12071-12657 2.49e-01 100 chrVI:191199-191782 5.20e-03 71_[-1(4.43e-05)] chrXI:146799-147449 9.97e-02 59_[-3(4.12e-05)]_20 chrI:141595-141920 6.70e-01 100 chrIV:1278089-1278339 7.71e-01 100 chrXVI:821638-822237 2.85e-02 10_[+3(8.89e-06)]_69 chrXIII:625852-627341 2.00e-01 100 chrVII:371217-371510 6.87e-02 100 chrVII:254109-254748 7.36e-01 100 chrXI:260631-260872 7.11e-01 100 chrIV:721007-722163 2.52e-01 100 chrIII:149703-150193 2.15e-07 27_[+2(1.39e-06)]_4_[-1(3.53e-08)]_\ 13 chrXVI:404506-407767 2.55e-02 12_[+1(8.78e-05)]_59 chrIV:1075316-1075758 1.04e-03 24_[-2(1.58e-07)]_49 chrXI:379690-380271 2.09e-01 100 chrIX:248522-249352 9.86e-05 56_[+3(3.03e-07)]_23 chrXIV:560295-560863 2.50e-03 57_[-3(6.18e-07)]_22 chrIV:976984-977169 9.26e-01 100 chrXII:366028-366565 1.19e-01 100 chrIX:231302-232343 8.51e-01 100 chrII:226977-227338 6.11e-02 14_[-1(5.59e-05)]_57 chrXI:322425-322976 7.88e-01 100 chrXVI:75059-76833 2.81e-01 100 chrVII:287174-287763 5.14e-04 4_[-2(2.42e-06)]_69 chrXV:710124-710552 3.17e-01 100 chrXII:11253-11496 2.45e-01 100 chrVII:736190-737080 2.24e-01 100 chrXV:854003-854806 5.89e-01 100 chrXIII:159294-159789 8.19e-01 100 chrV:61111-62150 5.92e-01 100 chrXVI:572013-572565 7.84e-11 35_[+2(1.17e-06)]_3_[-1(7.40e-12)]_\ 6 chrII:594756-595567 7.53e-01 100 chrIV:884267-884579 8.80e-01 100 chrXV:670875-672245 4.21e-02 100 chrIV:975698-976813 3.47e-01 100 chrXIII:768188-768446 6.91e-01 100 chrVI:167250-167695 1.74e-07 20_[+2(4.65e-06)]_21_[-1(1.62e-08)]_\ 3 chrXII:722730-723382 6.13e-01 100 chrVIII:34405-36097 2.96e-01 100 chrX:454258-454358 6.87e-01 100 chrVII:185358-185923 4.52e-01 100 chrVIII:147878-148735 5.85e-01 100 chrXII:818504-820276 1.47e-01 100 chrXIII:296713-298855 4.31e-01 100 chrXIV:241386-241804 7.98e-01 100 chrXIV:721187-723179 4.36e-01 100 chrVII:310387-312629 1.87e-01 100 chrXVI:775640-776173 7.65e-01 100 chrXIII:91181-92091 5.93e-01 100 chrIV:1507035-1507800 7.03e-01 100 chrXV:594310-594657 8.08e-01 100 chrXIII:290604-291136 1.35e-07 17_[-1(1.14e-11)]_54 chrVII:787344-788746 9.19e-01 100 chrXI:490771-491190 1.05e-06 43_[+2(9.93e-10)]_30 chrX:360144-360244 2.63e-01 100 chrVI:157846-158198 2.58e-04 2_[-2(3.47e-08)]_71 chrXVI:280599-281936 6.63e-03 [+2(2.01e-05)]_73 chrVI:31704-32266 4.12e-01 100 chrI:185146-186308 4.81e-01 100 chrXII:805804-806830 4.00e-01 100 chrXI:617710-619331 8.03e-01 100 chrX:745020-745120 9.51e-01 100 chrV:174718-175181 9.57e-01 100 chrIV:1086865-1087395 2.74e-02 5_[+3(3.11e-05)]_74 chrVII:23886-25758 2.27e-01 100 chrXIII:379025-379621 2.26e-07 14_[-3(9.67e-06)]_[+1(4.53e-09)]_36 chrXIV:102578-103160 1.84e-01 100 chrIII:90859-91095 8.00e-02 100 chrXII:546267-547460 4.97e-01 100 chrVII:882432-883996 2.06e-01 100 chrXI:83987-84472 5.02e-05 34_[+2(1.50e-06)]_39 chrIII:142351-142975 1.14e-05 44_[-3(4.72e-10)]_35 chrXII:975755-976186 1.77e-04 68_[+1(5.10e-08)]_3 chrIII:162516-163919 1.47e-02 76_[-3(5.74e-06)]_3 chrV:241962-242596 5.79e-01 100 chrXII:423739-424528 8.93e-01 100 chrIV:1233684-1234081 8.84e-01 100 chrXII:97174-97830 4.92e-01 100 chrVII:115343-115724 9.46e-14 10_[+2(6.71e-11)]_28_[-1(9.38e-11)]_\ 6 chrXVI:502780-503339 6.65e-01 100 chrVI:31042-31452 3.99e-01 100 chrIII:78-1033 2.84e-02 34_[-2(1.52e-05)]_39 chrII:266206-266667 1.43e-05 29_[-1(2.86e-09)]_42 chrXII:370515-371289 4.10e-01 100 chrII:36232-36811 4.08e-03 12_[+3(4.41e-05)]_3_[+3(2.23e-06)]_\ 43 chrXII:919513-923179 1.45e-01 100 chrXV:976278-976729 8.01e-05 5_[-1(8.37e-09)]_66 chrVII:989802-990459 9.75e-01 100 chrVI:210446-211140 4.65e-01 100 chrXI:21270-21849 2.55e-02 100 chrXV:1025711-1026060 2.14e-01 100 chrVII:738906-739612 1.82e-01 100 chrXV:216279-216708 3.83e-01 100 chrVII:625041-626034 1.14e-01 100 chrXVI:214619-215157 6.57e-01 100 chrXII:592317-592866 8.11e-05 45_[-2(1.38e-08)]_28 chrXVI:819326-820336 6.72e-01 100 chrVIII:174350-175994 8.60e-01 100 chrV:461725-462168 7.11e-01 100 chrXII:47465-49227 8.49e-02 100 chrXVI:585653-586920 8.22e-01 100 chrXIII:26237-26491 4.68e-01 100 chrII:135961-136327 1.50e-01 100 chrIII:82368-83340 5.24e-01 100 chrIV:519658-519956 2.67e-05 41_[+1(4.74e-08)]_30 chrXVI:927712-928126 4.44e-01 100 chrXIII:101248-101644 3.82e-01 100 chrXV:113474-113882 7.85e-01 100 chrXIII:168240-169032 9.74e-01 100 chrIX:174855-175856 2.86e-01 100 chrV:469121-469669 3.61e-01 100 chrVI:183339-183880 3.06e-01 100 chrV:23362-23869 4.38e-01 100 chrII:391524-391904 1.27e-01 100 chrXV:571704-572146 2.27e-01 100 chrXII:962829-963271 1.70e-04 22_[-2(2.17e-07)]_51 chrIX:138218-139152 8.49e-01 100 chrXV:444607-446230 9.49e-01 100 chrVII:700427-701267 3.76e-02 6_[+3(1.46e-05)]_73 chrXIII:652047-652927 5.43e-01 100 chrVIII:74773-75930 1.23e-01 73_[-3(8.43e-05)]_6 chrXVI:921228-921485 3.95e-01 100 chrV:322020-323273 5.74e-01 100 chrVII:440498-441137 2.59e-04 7_[-2(3.47e-08)]_66 chrXV:1003926-1005368 3.20e-01 100 chrXIII:808084-808550 1.29e-06 17_[-2(5.01e-09)]_2_[+3(9.51e-05)]_\ 33 chrXV:877742-878037 7.83e-01 100 chrX:523871-523971 4.19e-01 100 chrVII:592464-592956 1.77e-01 100 chrX:414790-414890 6.78e-12 20_[-1(4.42e-11)]_2_[+3(1.64e-06)]_\ 28 chrXII:645892-646262 3.21e-01 100 chrXII:232116-234233 1.55e-01 100 chrXVI:785678-785894 3.24e-01 100 chrXIII:747723-748151 1.18e-10 10_[+1(8.30e-11)]_4_[-2(3.60e-07)]_\ 30 chrXIV:525076-525265 8.15e-01 100 chrIV:1345271-1345998 8.97e-01 100 chrVII:531397-531786 6.06e-01 100 chrXI:382175-382455 5.61e-01 100 chrXI:307952-308410 2.88e-11 18_[+1(2.99e-11)]_6_[-2(2.95e-07)]_\ 20 chrV:235308-236901 1.78e-01 100 chrXI:517783-518230 1.37e-15 37_[+2(8.42e-12)]_5_[-1(2.41e-10)]_\ 2 chrXV:677968-679174 1.01e-02 22_[+3(1.48e-06)]_33_[+3(5.76e-05)]_\ 3 chrX:415727-415827 5.53e-05 9_[+1(4.53e-09)]_62 chrI:138959-139364 1.33e-03 46_[+2(3.60e-07)]_27 chrVII:422901-423358 5.16e-04 18_[+2(4.80e-07)]_55 chrX:540887-540987 9.85e-01 100 chrIV:229538-230808 5.27e-01 100 chrVII:986550-987686 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chrXVI:645295-646217 8.51e-01 100 chrVI:226429-227010 1.29e-14 1_[-3(5.25e-06)]_2_[+1(4.42e-11)]_5_\ [-2(2.07e-08)]_15 chrXII:837667-839403 6.94e-01 100 chrXIII:420278-420882 2.04e-07 63_[+1(2.99e-11)]_8 chrIII:78367-78910 6.27e-02 100 chrV:221526-221796 1.00e-01 100 chrVII:557687-557929 3.03e-01 100 chrVII:661523-661960 7.33e-04 63_[+2(2.17e-07)]_10 chrXIV:104635-105046 5.16e-11 20_[+2(4.31e-09)]_5_[-1(2.86e-09)]_\ 19 chrXIII:463357-463891 2.11e-05 16_[-1(1.32e-09)]_55 chrXI:513118-513600 2.23e-09 28_[+1(1.32e-09)]_4_[-2(6.95e-07)]_\ 12 chrXIV:426923-427308 1.19e-03 70_[+3(1.85e-05)]_9 chrIV:1355732-1355986 5.57e-01 100 chrIV:1268982-1269435 7.00e-01 100 chrII:332276-333073 8.55e-01 100 chrXII:712329-712886 8.89e-01 100 chrXV:92806-94792 9.35e-01 100 chrX:120270-120370 3.98e-01 100 chrXI:258422-258967 3.67e-01 100 chrVII:726291-728089 1.79e-01 100 chrIX:183304-183695 2.76e-04 31_[-2(2.36e-08)]_42 chrIV:76879-77637 2.27e-02 26_[+3(4.37e-06)]_53 chrXIV:602091-602533 4.25e-05 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chrXIII:837724-838232 1.74e-07 5_[+2(4.65e-06)]_21_[-1(1.62e-08)]_\ 18 chrV:311716-312296 6.07e-01 100 chrVII:609335-610117 1.99e-03 43_[-3(2.68e-07)]_36 chrVII:110380-110786 1.97e-01 100 chrXVI:678556-679381 8.49e-01 100 chrV:492204-492556 2.28e-12 27_[+1(7.17e-10)]_5_[-2(9.93e-10)]_\ 12 chrXII:459595-460740 6.03e-01 100 chrXIV:568051-568645 8.11e-04 9_[-3(7.12e-08)]_70 chrIII:151016-151588 1.17e-13 15_[-3(5.40e-05)]_1_[+1(4.42e-11)]_\ 5_[-2(2.07e-08)]_2 chrX:227751-227851 7.72e-01 100 chrXII:636688-639969 3.52e-01 100 chrIV:1080574-1080876 1.24e-01 100 chrXV:758974-759532 6.89e-01 100 chrXIII:145859-147209 3.55e-01 100 chrXV:391533-391964 8.89e-01 100 chrXI:99743-100002 7.13e-01 100 chrXVI:744084-744557 3.91e-07 19_[+2(2.17e-07)]_4_[-1(3.82e-07)]_\ 21 chrXV:252890-254716 8.87e-01 100 chrV:441805-442677 5.27e-01 100 chrIV:1305353-1305904 8.37e-06 57_[+2(1.95e-09)]_16 chrXV:383010-383474 3.31e-01 100 chrIV:802586-802999 8.32e-08 27_[-2(5.01e-09)]_46 chrXII:710497-711708 3.11e-01 100 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chrXIII:225016-226694 9.56e-01 100 chrIV:1236415-1237999 5.06e-01 100 chrXII:201668-202672 6.35e-01 100 chrVI:220288-222422 5.11e-02 17_[-3(4.41e-05)]_62 chrXI:312767-314134 4.49e-05 6_[+1(7.80e-08)]_65 chrIV:1273835-1274381 1.11e-03 10_[-3(1.08e-07)]_69 chrXII:214695-215064 7.63e-10 30_[-3(1.64e-06)]_8_[+1(5.71e-11)]_\ 12 chrXI:7828-8185 7.25e-01 100 chrX:354015-354115 9.96e-03 52_[+2(4.65e-06)]_21 chrXV:28394-30826 1.04e-01 100 chrX:617716-617816 8.11e-05 40_[+2(1.38e-08)]_33 chrVII:968820-969445 9.74e-01 100 chrXIV:442795-444790 6.47e-01 100 chrVII:412011-412591 5.02e-08 48_[+1(2.99e-11)]_23 chrXV:778590-779480 9.12e-01 100 chrVII:364894-366687 5.43e-01 100 chrXIV:413572-414923 8.63e-02 24_[-1(3.49e-05)]_47 chrXV:226456-226885 5.00e-03 28_[-2(1.17e-06)]_45 chrXVI:39945-40606 4.84e-01 100 chrVII:845451-846285 1.44e-02 63_[-2(2.23e-05)]_10 chrXIV:763404-764501 6.85e-01 100 chrXVI:431970-432187 6.32e-02 100 chrI:65877-67531 9.15e-01 100 chrVII:856597-857678 8.81e-01 100 chrXII:704236-704595 2.56e-03 78_[+3(4.36e-07)]_1 chrXI:578725-579396 1.25e-10 15_[-1(9.38e-11)]_35_[-3(2.08e-07)] chrIV:578839-580717 9.72e-01 100 chrXIV:330808-332299 1.95e-01 100 chrIV:221416-222360 1.50e-01 40_[-3(7.92e-05)]_39 chrII:642841-643323 2.27e-02 13_[-2(3.49e-05)]_60 chrXII:611387-612069 9.61e-01 100 chrIV:1461475-1461835 1.90e-01 100 chrII:444745-445255 8.77e-01 100 chrXVI:810579-811802 4.75e-01 100 chrXIII:586371-586902 1.63e-07 55_[+1(2.99e-11)]_16 chrV:487098-487618 1.08e-10 28_[+1(1.14e-11)]_4_[-2(1.63e-06)]_\ 12 chrVII:122051-123117 1.48e-01 100 chrIX:197346-197803 2.59e-03 73_[+2(1.08e-06)] chrXI:107898-110143 3.96e-01 100 chrXIII:873650-874169 8.30e-01 100 chrVII:648741-649370 5.02e-04 77_[-3(4.90e-07)]_2 chrXIII:372176-372662 8.72e-02 30_[+1(9.65e-05)]_41 chrXII:656827-657198 1.30e-07 11_[-2(8.42e-12)]_62 chrIV:1095157-1095644 4.22e-08 3_[-3(5.74e-06)]_1_[+1(2.37e-09)]_\ 46 chrXVI:210030-210526 7.99e-03 2_[-2(1.63e-06)]_71 chrVII:323484-324666 2.90e-02 20_[+3(1.71e-05)]_59 chrXIV:173692-174665 5.19e-01 100 chrIX:257340-257916 4.17e-01 100 chrII:680356-682418 3.53e-01 100 chrXIV:503139-503351 7.66e-01 100 chrIX:300006-300499 3.56e-13 31_[+1(4.42e-11)]_5_[-2(2.07e-08)]_\ 8 chrXVI:879855-880567 1.97e-02 79_[-3(4.37e-06)] chrIX:25920-26502 3.39e-01 100 chrXI:259148-259532 2.28e-01 100 chrXV:348753-349335 3.38e-01 100 chrVII:702894-704595 8.62e-01 100 chrXII:282604-283988 1.46e-02 74_[+3(3.85e-05)]_5 chrII:88927-90062 8.16e-01 100 chrVII:878554-879044 3.45e-03 33_[-2(2.42e-06)]_40 chrXIII:758974-759542 8.15e-01 100 chrX:374196-374296 1.56e-10 26_[+1(8.30e-11)]_4_[-2(3.60e-07)]_\ 14 chrXIV:499144-500741 5.38e-01 100 chrVII:798597-800111 4.67e-01 100 chrVII:328387-329035 7.80e-01 100 chrIV:1352251-1353285 4.70e-01 100 chrVII:277019-278695 5.54e-01 100 chrVIII:554124-554728 7.26e-01 100 chrXV:487448-487768 6.84e-01 100 chrXV:877258-877512 8.69e-01 100 chrII:87930-88576 6.10e-01 100 chrVIII:451232-453141 4.92e-01 100 chrXII:498338-499871 6.04e-02 100 chrIV:543370-544005 7.10e-03 54_[-3(4.37e-06)]_25 chrXIV:776541-777234 1.90e-01 100 chrXII:793711-797379 4.90e-02 23_[-3(1.35e-05)]_21_[+3(1.99e-05)]_\ 14 chrV:435609-436006 9.14e-12 [+1(4.42e-11)]_5_[-2(2.07e-08)]_39 chrXV:978792-979357 6.10e-01 100 chrIV:1278594-1279381 3.27e-01 100 chrIII:168119-168541 1.92e-11 26_[+1(4.20e-10)]_4_[-2(5.01e-09)]_\ 14 chrVI:95410-95943 2.29e-02 30_[+2(1.21e-05)]_43 chrX:702537-702637 9.91e-01 100 chrXI:46715-47004 6.59e-01 100 chrIX:177538-178395 8.88e-01 100 chrV:176902-177457 1.88e-07 6_[-1(1.14e-11)]_65 chrXIII:309588-309906 1.50e-01 11_[-1(7.73e-05)]_60 chrXII:198396-199714 8.23e-01 100 chrIV:1175594-1176054 3.87e-04 60_[+2(5.68e-08)]_13 chrIV:1269906-1271044 2.52e-01 100 chrXIV:374644-375115 1.82e-04 45_[+2(3.47e-08)]_28 chrIX:68254-68507 4.39e-03 45_[+3(9.66e-07)]_34 chrVIII:237367-238133 2.14e-04 37_[+3(3.43e-07)]_42 chrVIII:505802-506207 3.44e-01 100 chrXVI:699777-700660 8.54e-02 100 chrVIII:555106-555445 2.42e-01 100 chrXIV:301297-302329 1.55e-01 29_[+3(6.15e-05)]_50 chrXIII:306097-307241 3.85e-03 14_[-2(1.91e-06)]_59 chrXI:430785-431682 3.44e-01 100 chrI:180950-181479 3.61e-01 100 chrV:138453-141367 9.54e-01 100 chrXIII:388311-388646 1.61e-01 100 chrXV:234230-234561 5.84e-01 100 chrXVI:581866-582271 1.86e-04 49_[+2(2.07e-08)]_24 chrV:77502-79482 2.65e-01 100 chrX:517648-517748 2.33e-07 3_[+1(3.53e-08)]_4_[-2(1.39e-06)]_\ 37 chrIII:227775-228231 1.12e-01 100 chrXVI:559984-560284 4.12e-03 46_[+3(6.92e-07)]_33 chrXVI:134832-135838 5.76e-01 100 chrII:604079-607118 1.12e-02 34_[+3(5.05e-05)]_45 chrXIII:504911-505230 2.15e-01 100 chrXV:619186-623730 3.38e-01 100 chrV:434395-434978 9.93e-01 100 chrII:347411-347929 1.42e-06 38_[+1(3.80e-08)]_9_[+3(1.14e-05)]_\ 3 chrX:26169-26269 1.82e-01 100 chrXVI:642030-643371 3.68e-01 100 chrXIV:392311-392730 9.38e-01 100 chrXV:673531-674079 5.87e-01 100 chrVI:223237-224154 1.03e-03 18_[+3(1.08e-06)]_61 chrIX:388152-388816 5.24e-01 100 chrVII:774135-774687 1.77e-07 25_[-1(2.41e-10)]_46 chrIX:370214-370639 6.10e-05 18_[-3(2.50e-05)]_7_[+2(1.63e-06)]_\ 27 chrXII:167788-168250 1.94e-05 23_[-2(1.95e-09)]_50 chrVIII:125905-127487 9.60e-01 100 chrIV:992691-993200 9.25e-01 100 chrXV:438436-439401 1.68e-02 100 chrXII:605143-605603 7.70e-01 100 chrII:476844-477761 4.03e-03 74_[-3(1.33e-06)]_5 chrVII:766082-766750 7.95e-01 100 chrXV:228056-228556 9.64e-01 100 chrII:167881-169601 1.89e-01 100 chrIV:619762-620214 1.99e-12 36_[+1(7.17e-10)]_5_[-2(9.93e-10)]_\ 3 chrXVI:113856-114929 1.50e-01 100 chrXIII:498965-500772 9.10e-02 100 chrX:650824-650924 2.95e-01 100 chrXVI:794464-796152 5.83e-01 100 chrVIII:379380-380186 8.16e-01 100 chrXIII:362940-363303 2.32e-07 29_[-1(7.80e-08)]_1_[+3(7.74e-07)]_\ 20 chrXII:369659-370309 3.04e-01 100 chrVII:384723-384962 1.79e-01 100 chrXV:353893-354315 2.92e-05 26_[-2(4.31e-09)]_47 chrXII:92333-92730 1.19e-03 72_[+2(3.60e-07)]_1 chrIII:315600-316506 2.87e-01 100 chrXIII:872579-872911 1.41e-01 100 chrVIII:48253-49014 9.60e-01 100 chrVI:180603-181248 6.59e-01 100 chrVIII:466808-467193 8.19e-04 45_[+2(2.17e-07)]_28 chrV:270381-270819 8.74e-01 100 chrXIV:715977-716630 2.82e-01 100 chrXV:281968-282470 1.24e-11 [+2(1.17e-06)]_3_[-1(7.40e-12)]_41 chrX:355185-355285 3.76e-09 30_[+2(6.95e-07)]_4_[-1(1.32e-09)]_\ 10 chrIV:974352-974688 7.19e-01 100 chrXV:638935-639467 9.57e-01 100 chrIV:45218-46128 4.21e-01 100 chrXIII:572579-573157 7.80e-06 70_[+1(8.37e-09)]_1 chrXV:384592-385056 2.51e-03 31_[+3(6.28e-06)]_48 chrXI:162109-162723 3.95e-01 100 chrVII:730960-731484 4.21e-04 3_[-1(5.10e-08)]_68 chrVII:398649-400105 4.75e-01 100 chrV:266202-268177 3.01e-01 100 chrIV:591813-592056 8.93e-01 100 chrXII:448034-448853 7.98e-02 100 chrVI:105485-107005 7.58e-06 78_[+3(5.86e-10)]_1 chrXVI:378651-378988 3.48e-01 100 chrIX:23449-25287 9.34e-01 100 chrXIV:725712-726339 8.11e-01 100 chrXI:219624-220116 9.70e-01 100 chrII:45639-46695 4.52e-01 100 chrV:491034-491939 4.96e-01 100 chrIX:314780-315096 7.89e-02 100 chrXVI:689353-689850 1.09e-07 19_[+2(1.54e-10)]_54 chrVII:930737-931654 1.87e-01 100 chrIV:1256815-1257283 4.61e-09 14_[+1(1.96e-09)]_4_[-2(3.26e-07)]_\ 26 chrIV:1013421-1013937 9.96e-01 100 chrIV:980734-981168 4.43e-02 100 chrVI:162009-162392 1.50e-01 100 chrIV:354800-356948 1.39e-01 100 chrX:390878-390978 2.74e-04 26_[-2(5.68e-08)]_47 chrXVI:282126-282966 2.20e-01 100 chrIX:394340-395440 1.10e-02 8_[-3(1.35e-05)]_71 chrXIV:302605-303716 5.78e-01 100 chrXVI:856743-857151 9.98e-15 10_[+2(8.42e-12)]_5_[-1(2.41e-10)]_\ 29 chrVIII:145286-146465 2.29e-01 100 chrV:53514-53941 6.00e-01 100 chrIV:32-315 4.85e-01 100 chrIV:1359373-1360841 3.40e-01 100 chrXIII:407856-408909 2.22e-01 100 chrXIV:88960-89713 2.05e-06 34_[+3(2.23e-10)]_45 chrIV:359371-359787 1.05e-06 53_[+2(6.71e-11)]_20 chrXV:977177-978354 5.99e-02 100 chrXIV:631530-632117 7.26e-05 71_[-1(1.52e-07)] chrX:378210-378310 7.22e-11 20_[+2(2.95e-07)]_6_[-1(2.99e-11)]_\ 18 chrXV:423649-424725 2.38e-01 100 chrIX:325744-326135 7.74e-01 100 chrII:405604-406220 2.53e-10 21_[+2(3.60e-07)]_4_[-1(8.30e-11)]_\ 19 chrVII:599345-601107 5.03e-01 100 chrII:162987-163996 7.78e-01 100 chrV:288159-288798 1.07e-07 63_[-2(1.54e-10)]_10 chrVII:397954-398170 2.84e-01 100 chrVI:224334-225228 1.62e-03 40_[+3(3.43e-07)]_39 chrIV:722359-722826 8.77e-01 100 chrXIII:650785-651882 9.85e-01 100 chrXVI:519974-520527 6.44e-02 100 chrVIII:374659-375939 9.11e-01 100 chrXII:808997-809544 4.46e-02 32_[-3(1.05e-05)]_47 chrIV:490690-492726 7.74e-01 100 chrX:396596-396696 1.74e-03 13_[-2(1.17e-06)]_60 chrIV:434099-434978 1.11e-02 73_[+3(3.62e-06)]_6 chrIII:127586-127891 9.03e-08 33_[+2(7.60e-07)]_6_[-1(5.10e-08)]_\ 5 chrX:73365-73465 3.77e-02 100 chrXV:504971-505493 8.15e-01 100 chrXIV:783520-784321 4.20e-01 100 chrIV:758770-759645 8.09e-01 100 chrXII:170066-170641 5.23e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************