******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--NOT3/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71796-73264 1.0000 100 chrI:81876-82400 1.0000 100 chrI:138965-139348 1.0000 100 chrI:141174-141897 1.0000 100 chrI:166177-166563 1.0000 100 chrI:180947-181445 1.0000 100 chrI:182146-183178 1.0000 100 chrII:9371-10161 1.0000 100 chrII:36235-36586 1.0000 100 chrII:44996-45338 1.0000 100 chrII:60850-61997 1.0000 100 chrII:89660-90168 1.0000 100 chrII:165090-165401 1.0000 100 chrII:167926-168157 1.0000 100 chrII:181307-181677 1.0000 100 chrII:197115-197829 1.0000 100 chrII:226985-227332 1.0000 100 chrII:266211-266628 1.0000 100 chrII:326559-327071 1.0000 100 chrII:332348-332872 1.0000 100 chrII:347412-348065 1.0000 100 chrII:350610-351028 1.0000 100 chrII:405598-406210 1.0000 100 chrII:415583-416893 1.0000 100 chrII:444749-445013 1.0000 100 chrII:477035-477713 1.0000 100 chrII:592899-593318 1.0000 100 chrII:603798-605489 1.0000 100 chrII:605670-606113 1.0000 100 chrII:642864-643249 1.0000 100 chrII:644954-645415 1.0000 100 chrIII:81616-82702 1.0000 100 chrIII:90885-91060 1.0000 100 chrIII:123447-123789 1.0000 100 chrIII:127585-127869 1.0000 100 chrIII:142631-142987 1.0000 100 chrIII:149702-150201 1.0000 100 chrIII:151041-151595 1.0000 100 chrIII:163472-163873 1.0000 100 chrIII:168131-168532 1.0000 100 chrIII:178124-178701 1.0000 100 chrIII:227741-228211 1.0000 100 chrIII:262724-263087 1.0000 100 chrIII:295312-296004 1.0000 100 chrIV:83443-84093 1.0000 100 chrIV:117165-117865 1.0000 100 chrIV:130141-130974 1.0000 100 chrIV:205392-209721 1.0000 100 chrIV:209966-210607 1.0000 100 chrIV:221982-222297 1.0000 100 chrIV:308050-308527 1.0000 100 chrIV:309798-310158 1.0000 100 chrIV:341286-342350 1.0000 100 chrIV:357998-358482 1.0000 100 chrIV:359354-359762 1.0000 100 chrIV:382494-384739 1.0000 100 chrIV:410144-410794 1.0000 100 chrIV:411268-411657 1.0000 100 chrIV:433580-434863 1.0000 100 chrIV:437548-437977 1.0000 100 chrIV:488512-489105 1.0000 100 chrIV:519658-519899 1.0000 100 chrIV:520678-521106 1.0000 100 chrIV:568687-569798 1.0000 100 chrIV:578781-580400 1.0000 100 chrIV:619718-620371 1.0000 100 chrIV:645065-645362 1.0000 100 chrIV:667717-668195 1.0000 100 chrIV:758454-759651 1.0000 100 chrIV:802464-802982 1.0000 100 chrIV:835781-836237 1.0000 100 chrIV:884265-884576 1.0000 100 chrIV:946151-946595 1.0000 100 chrIV:974271-974801 1.0000 100 chrIV:980744-981164 1.0000 100 chrIV:992694-993374 1.0000 100 chrIV:1016961-1017494 1.0000 100 chrIV:1075341-1075744 1.0000 100 chrIV:1094912-1095667 1.0000 100 chrIV:1150741-1151153 1.0000 100 chrIV:1175592-1176054 1.0000 100 chrIV:1201553-1201994 1.0000 100 chrIV:1233685-1235056 1.0000 100 chrIV:1236538-1237983 1.0000 100 chrIV:1256908-1257324 1.0000 100 chrIV:1300557-1301306 1.0000 100 chrIV:1305118-1305814 1.0000 100 chrIV:1351847-1353426 1.0000 100 chrIV:1359442-1360806 1.0000 100 chrIV:1400901-1401967 1.0000 100 chrIV:1461378-1461830 1.0000 100 chrIX:23819-25226 1.0000 100 chrIX:98581-99351 1.0000 100 chrIX:99659-100131 1.0000 100 chrIX:174639-175728 1.0000 100 chrIX:183295-183702 1.0000 100 chrIX:197332-197770 1.0000 100 chrIX:210521-211677 1.0000 100 chrIX:248573-248993 1.0000 100 chrIX:254260-254519 1.0000 100 chrIX:257391-257713 1.0000 100 chrIX:299992-300486 1.0000 100 chrIX:315591-315754 1.0000 100 chrIX:315976-318191 1.0000 100 chrIX:324010-324373 1.0000 100 chrIX:325755-326120 1.0000 100 chrIX:335853-336637 1.0000 100 chrIX:370219-370821 1.0000 100 chrIX:391699-392000 1.0000 100 chrV:42160-42594 1.0000 100 chrV:52061-53188 1.0000 100 chrV:53544-53918 1.0000 100 chrV:61327-62169 1.0000 100 chrV:67175-68873 1.0000 100 chrV:85152-85434 1.0000 100 chrV:86395-87290 1.0000 100 chrV:99761-100325 1.0000 100 chrV:117682-118322 1.0000 100 chrV:130799-131372 1.0000 100 chrV:135133-136124 1.0000 100 chrV:138457-140893 1.0000 100 chrV:176888-177505 1.0000 100 chrV:249796-250488 1.0000 100 chrV:288150-288883 1.0000 100 chrV:305821-306920 1.0000 100 chrV:311741-312293 1.0000 100 chrV:354696-355206 1.0000 100 chrV:364067-364464 1.0000 100 chrV:396199-396566 1.0000 100 chrV:423085-423475 1.0000 100 chrV:431024-432017 1.0000 100 chrV:434418-435333 1.0000 100 chrV:435659-436008 1.0000 100 chrV:438513-438900 1.0000 100 chrV:441804-442669 1.0000 100 chrV:443037-443374 1.0000 100 chrV:469161-469652 1.0000 100 chrV:487103-487761 1.0000 100 chrV:492226-492553 1.0000 100 chrV:550982-551586 1.0000 100 chrVI:64225-65343 1.0000 100 chrVI:75233-75900 1.0000 100 chrVI:95481-95886 1.0000 100 chrVI:101158-101549 1.0000 100 chrVI:136146-137693 1.0000 100 chrVI:157902-158228 1.0000 100 chrVI:162017-162385 1.0000 100 chrVI:166747-167679 1.0000 100 chrVI:180638-181265 1.0000 100 chrVI:190925-191783 1.0000 100 chrVI:210449-211103 1.0000 100 chrVI:221769-222162 1.0000 100 chrVI:226677-227136 1.0000 100 chrVII:110280-110779 1.0000 100 chrVII:115341-115715 1.0000 100 chrVII:122040-122406 1.0000 100 chrVII:148868-149576 1.0000 100 chrVII:184662-185904 1.0000 100 chrVII:205315-205740 1.0000 100 chrVII:254110-254699 1.0000 100 chrVII:277046-277355 1.0000 100 chrVII:287240-287658 1.0000 100 chrVII:310496-311920 1.0000 100 chrVII:319239-320108 1.0000 100 chrVII:328409-328945 1.0000 100 chrVII:364915-366583 1.0000 100 chrVII:405476-405992 1.0000 100 chrVII:411608-412573 1.0000 100 chrVII:422880-423310 1.0000 100 chrVII:438617-438862 1.0000 100 chrVII:440538-441028 1.0000 100 chrVII:481512-482761 1.0000 100 chrVII:531272-531873 1.0000 100 chrVII:533979-535171 1.0000 100 chrVII:541720-542136 1.0000 100 chrVII:544421-544904 1.0000 100 chrVII:555173-555686 1.0000 100 chrVII:648778-649368 1.0000 100 chrVII:661545-661938 1.0000 100 chrVII:700414-701234 1.0000 100 chrVII:706946-707174 1.0000 100 chrVII:726176-726756 1.0000 100 chrVII:730970-731374 1.0000 100 chrVII:736201-736542 1.0000 100 chrVII:736892-737080 1.0000 100 chrVII:738881-739497 1.0000 100 chrVII:771487-772305 1.0000 100 chrVII:774135-774584 1.0000 100 chrVII:779380-779930 1.0000 100 chrVII:787349-788698 1.0000 100 chrVII:794074-794564 1.0000 100 chrVII:823354-823697 1.0000 100 chrVII:824175-825043 1.0000 100 chrVII:828329-828978 1.0000 100 chrVII:845460-846276 1.0000 100 chrVII:857061-857644 1.0000 100 chrVII:876180-876830 1.0000 100 chrVII:878608-879070 1.0000 100 chrVII:914868-915992 1.0000 100 chrVII:921052-921755 1.0000 100 chrVII:930201-931669 1.0000 100 chrVII:1004054-1004407 1.0000 100 chrVIII:62611-63392 1.0000 100 chrVIII:74861-75881 1.0000 100 chrVIII:103750-104714 1.0000 100 chrVIII:115980-116401 1.0000 100 chrVIII:125903-126285 1.0000 100 chrVIII:133954-135003 1.0000 100 chrVIII:145920-146457 1.0000 100 chrVIII:148979-149431 1.0000 100 chrVIII:174433-176008 1.0000 100 chrVIII:214148-214358 1.0000 100 chrVIII:237770-238138 1.0000 100 chrVIII:296652-297180 1.0000 100 chrVIII:358284-358759 1.0000 100 chrVIII:374679-376577 1.0000 100 chrVIII:382696-383318 1.0000 100 chrVIII:388678-388980 1.0000 100 chrVIII:466813-467280 1.0000 100 chrVIII:475413-475904 1.0000 100 chrVIII:505849-506175 1.0000 100 chrVIII:554182-554722 1.0000 100 chrVIII:555085-555438 1.0000 100 chrX:59085-59384 1.0000 100 chrX:73436-74090 1.0000 100 chrX:75362-75691 1.0000 100 chrX:90055-90420 1.0000 100 chrX:115815-116272 1.0000 100 chrX:120502-121818 1.0000 100 chrX:157486-157833 1.0000 100 chrX:196375-196961 1.0000 100 chrX:197152-197432 1.0000 100 chrX:204557-205036 1.0000 100 chrX:233472-234155 1.0000 100 chrX:354000-354492 1.0000 100 chrX:355193-355748 1.0000 100 chrX:366934-367164 1.0000 100 chrX:374203-374894 1.0000 100 chrX:375115-375281 1.0000 100 chrX:377879-378561 1.0000 100 chrX:390141-391332 1.0000 100 chrX:396534-396939 1.0000 100 chrX:414714-415240 1.0000 100 chrX:415748-416237 1.0000 100 chrX:422655-423346 1.0000 100 chrX:423511-423674 1.0000 100 chrX:424291-424722 1.0000 100 chrX:517662-518087 1.0000 100 chrX:520455-521950 1.0000 100 chrX:523494-523753 1.0000 100 chrX:523926-524529 1.0000 100 chrX:531575-532246 1.0000 100 chrX:538023-538724 1.0000 100 chrX:540883-541883 1.0000 100 chrX:542826-543265 1.0000 100 chrX:555973-556741 1.0000 100 chrX:617707-618229 1.0000 100 chrX:651284-651572 1.0000 100 chrX:652028-652607 1.0000 100 chrX:703287-703670 1.0000 100 chrX:745070-745485 1.0000 100 chrXI:46716-47013 1.0000 100 chrXI:74388-74809 1.0000 100 chrXI:83991-84428 1.0000 100 chrXI:107870-109044 1.0000 100 chrXI:140679-141471 1.0000 100 chrXI:158236-158777 1.0000 100 chrXI:158970-159500 1.0000 100 chrXI:162195-162756 1.0000 100 chrXI:202191-203272 1.0000 100 chrXI:219555-220086 1.0000 100 chrXI:302693-303188 1.0000 100 chrXI:307954-308430 1.0000 100 chrXI:312245-314037 1.0000 100 chrXI:379711-379992 1.0000 100 chrXI:457521-459003 1.0000 100 chrXI:490769-491164 1.0000 100 chrXI:513202-513606 1.0000 100 chrXI:517792-518063 1.0000 100 chrXI:519373-521092 1.0000 100 chrXI:578759-579329 1.0000 100 chrXI:618750-619269 1.0000 100 chrXII:48744-49222 1.0000 100 chrXII:64334-65887 1.0000 100 chrXII:87433-88432 1.0000 100 chrXII:92253-92880 1.0000 100 chrXII:97175-97863 1.0000 100 chrXII:167789-168240 1.0000 100 chrXII:214650-215059 1.0000 100 chrXII:241679-241990 1.0000 100 chrXII:366039-366499 1.0000 100 chrXII:374209-374678 1.0000 100 chrXII:426918-428428 1.0000 100 chrXII:448537-448842 1.0000 100 chrXII:459622-460160 1.0000 100 chrXII:460506-460674 1.0000 100 chrXII:546515-547515 1.0000 100 chrXII:592320-592968 1.0000 100 chrXII:605154-605640 1.0000 100 chrXII:627797-629167 1.0000 100 chrXII:656837-657217 1.0000 100 chrXII:673519-674215 1.0000 100 chrXII:713171-713603 1.0000 100 chrXII:731097-732301 1.0000 100 chrXII:734581-734925 1.0000 100 chrXII:780518-781868 1.0000 100 chrXII:783874-784510 1.0000 100 chrXII:793676-794012 1.0000 100 chrXII:796343-797373 1.0000 100 chrXII:818510-819121 1.0000 100 chrXII:838002-839297 1.0000 100 chrXII:874892-875631 1.0000 100 chrXII:897727-898169 1.0000 100 chrXII:921802-923029 1.0000 100 chrXII:932098-932496 1.0000 100 chrXII:962861-963305 1.0000 100 chrXII:975730-976183 1.0000 100 chrXII:1018118-1019567 1.0000 100 chrXII:1028219-1028544 1.0000 100 chrXII:1051963-1052203 1.0000 100 chrXIII:91370-92079 1.0000 100 chrXIII:131621-132118 1.0000 100 chrXIII:145739-146253 1.0000 100 chrXIII:168197-169028 1.0000 100 chrXIII:170955-171299 1.0000 100 chrXIII:195941-196297 1.0000 100 chrXIII:225154-225704 1.0000 100 chrXIII:253387-253590 1.0000 100 chrXIII:259045-259375 1.0000 100 chrXIII:290498-291087 1.0000 100 chrXIII:296763-297894 1.0000 100 chrXIII:320979-321327 1.0000 100 chrXIII:352085-352600 1.0000 100 chrXIII:362945-363287 1.0000 100 chrXIII:368244-370347 1.0000 100 chrXIII:372180-372652 1.0000 100 chrXIII:378888-379636 1.0000 100 chrXIII:420334-420993 1.0000 100 chrXIII:463348-463878 1.0000 100 chrXIII:480429-480811 1.0000 100 chrXIII:504928-505216 1.0000 100 chrXIII:550064-551184 1.0000 100 chrXIII:551370-551789 1.0000 100 chrXIII:572274-573160 1.0000 100 chrXIII:586391-587093 1.0000 100 chrXIII:625937-626666 1.0000 100 chrXIII:731960-732644 1.0000 100 chrXIII:747760-748157 1.0000 100 chrXIII:754480-755304 1.0000 100 chrXIII:808116-808563 1.0000 100 chrXIII:837707-838225 1.0000 100 chrXIII:872445-873131 1.0000 100 chrXIII:887023-888715 1.0000 100 chrXIV:63139-63573 1.0000 100 chrXIV:96051-96497 1.0000 100 chrXIV:102578-103126 1.0000 100 chrXIV:104617-105026 1.0000 100 chrXIV:240631-242028 1.0000 100 chrXIV:374593-375065 1.0000 100 chrXIV:392315-392711 1.0000 100 chrXIV:442762-443221 1.0000 100 chrXIV:444483-444784 1.0000 100 chrXIV:493974-495025 1.0000 100 chrXIV:495218-495786 1.0000 100 chrXIV:525079-525285 1.0000 100 chrXIV:546549-547673 1.0000 100 chrXIV:560169-560814 1.0000 100 chrXIV:568055-568663 1.0000 100 chrXIV:569675-570163 1.0000 100 chrXIV:602099-602503 1.0000 100 chrXIV:619744-620021 1.0000 100 chrXIV:631535-632139 1.0000 100 chrXIV:632427-632854 1.0000 100 chrXIV:725757-726337 1.0000 100 chrXIV:783645-784320 1.0000 100 chrXV:79790-80108 1.0000 100 chrXV:92837-94775 1.0000 100 chrXV:110879-111193 1.0000 100 chrXV:113594-113880 1.0000 100 chrXV:161204-161745 1.0000 100 chrXV:167979-168477 1.0000 100 chrXV:216289-216691 1.0000 100 chrXV:226338-226887 1.0000 100 chrXV:228111-228530 1.0000 100 chrXV:253830-254087 1.0000 100 chrXV:274471-275000 1.0000 100 chrXV:281962-282350 1.0000 100 chrXV:287119-288368 1.0000 100 chrXV:300891-301663 1.0000 100 chrXV:340148-340592 1.0000 100 chrXV:353913-354328 1.0000 100 chrXV:438390-439462 1.0000 100 chrXV:444673-446122 1.0000 100 chrXV:464285-466089 1.0000 100 chrXV:487467-487862 1.0000 100 chrXV:504882-505478 1.0000 100 chrXV:571711-572124 1.0000 100 chrXV:594313-594674 1.0000 100 chrXV:663000-664092 1.0000 100 chrXV:678619-679091 1.0000 100 chrXV:710128-710633 1.0000 100 chrXV:779724-780751 1.0000 100 chrXV:853696-854788 1.0000 100 chrXV:866329-867138 1.0000 100 chrXV:877282-878007 1.0000 100 chrXV:925162-925411 1.0000 100 chrXV:968175-968661 1.0000 100 chrXV:976286-976689 1.0000 100 chrXV:978852-979064 1.0000 100 chrXV:979866-981315 1.0000 100 chrXV:1005154-1006613 1.0000 100 chrXV:1027962-1029097 1.0000 100 chrXVI:55906-56416 1.0000 100 chrXVI:76393-76744 1.0000 100 chrXVI:188696-188897 1.0000 100 chrXVI:210048-210589 1.0000 100 chrXVI:338450-339366 1.0000 100 chrXVI:339855-340216 1.0000 100 chrXVI:378694-378974 1.0000 100 chrXVI:406218-406534 1.0000 100 chrXVI:432600-434083 1.0000 100 chrXVI:435519-436179 1.0000 100 chrXVI:519950-520519 1.0000 100 chrXVI:559697-560278 1.0000 100 chrXVI:572041-572546 1.0000 100 chrXVI:581850-582183 1.0000 100 chrXVI:621984-622876 1.0000 100 chrXVI:627244-627517 1.0000 100 chrXVI:689380-689836 1.0000 100 chrXVI:692854-694850 1.0000 100 chrXVI:699783-700632 1.0000 100 chrXVI:731926-732288 1.0000 100 chrXVI:744094-744570 1.0000 100 chrXVI:745904-746715 1.0000 100 chrXVI:768863-769458 1.0000 100 chrXVI:775643-776098 1.0000 100 chrXVI:794491-794781 1.0000 100 chrXVI:810586-811498 1.0000 100 chrXVI:819330-819910 1.0000 100 chrXVI:856726-857118 1.0000 100 chrXVI:860132-860850 1.0000 100 chrXVI:879599-880581 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--NOT3/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--NOT3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--NOT3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 442 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 44200 N= 442 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.305 C 0.195 G 0.195 T 0.305 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--NOT3/background): A 0.309 C 0.191 G 0.191 T 0.309 ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAWYGVYCNMDVSSGGRWTCGAACC MEME-1 width = 30 sites = 66 llr = 1241 E-value = 3.4e-237 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAWYGVYCNMDVSSGGRWTCGAACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 88878775112113333113:74::19a:: pos.-specific C 11:::::14:44734:454:::2:8:::a8 probability G 1:12:111:83112242357a32::9:::: matrix T 1111122351131213:1::::2a2:1::2 bits 2.4 * * 2.1 * * 1.9 * * * 1.7 * *** * Relative 1.4 * ******* Entropy 1.2 * ** ******* (27.1 bits) 1.0 ** * * **** ******* 0.7 *** * * * ***** ******* 0.5 ******* *** * ******* ******* 0.2 ************* ******** ******* 0.0 ------------------------------ Multilevel AAAAAAAATGCCCCCGCCGGGAATCGAACC consensus TC GT AAAAGCA GT T sequence A TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGVYCNMDVSSGGRWTCGAACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrV:550982-551586 + 43 1.26e-13 TACGATTTTC AAAAAAAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrVII:930201-931669 + 60 1.82e-13 AAAAAGAAAA GAAAAAAATGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrXV:226338-226887 + 41 2.17e-13 AAAATTCAAC AAAAAATTTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrX:531575-532246 - 17 5.19e-13 GAAAAAAAGA AAAGAAACTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrX:396534-396939 + 32 7.24e-13 AGAAATATAA AAAAGAAATGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrXII:1051963-1052203 + 30 1.00e-12 TTAAAGTAAA AAAAATAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrV:443037-443374 + 39 1.00e-12 AGATTTTCAA AAAAAATATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrXII:214650-215059 + 71 2.21e-12 ATAAAAGTAA AAAATAAATGGACGCAACCGGAATCGAACC chrXVI:819330-819910 - 11 3.00e-12 ACCTGGGTCA AAAATAAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrXII:448537-448842 + 3 9.60e-12 GC AAAAAAGAAGGTCCTACCCGGATTCGAACC GGGGTTGTCC chrVII:738881-739497 - 35 9.60e-12 TGCATTCTAA AAAGTAAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrV:130799-131372 + 39 1.27e-11 TGAGCGGGGG AAAAAAATAGGTCTTACCCGGATTCGAACC GGGGTTGTTC chrXIII:480429-480811 + 43 1.91e-11 TGAATCTTCA AAAAAAGAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrX:197152-197432 + 63 2.18e-11 TTGAGAACAA AAAGAAATTGGACGAGTCCGGAATCGAACC GGAGACCT chrIII:151041-151595 + 8 2.49e-11 TCCAAGA AAAAAGAAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrXV:976286-976689 - 35 3.68e-11 ATATTAGCAA AAAAATATTGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrXIV:96051-96497 + 9 3.68e-11 ATGTCATC AAAAAATTTGAGCGGTACGAGAATCGAACC CGTGTCCCCA chrVI:180638-181265 + 65 4.75e-11 TATCCTTAAA AAAAGGACTGCGCAAGCCCGGAATCGAACC GGGGGC chrIX:299992-300486 + 31 4.75e-11 TGAAAATGGT AAAAAGATAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrXIII:463348-463878 - 41 6.10e-11 CTGGTCTGAT AAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrX:204557-205036 - 39 6.10e-11 TCAAGGGCCA AAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrII:226985-227332 - 27 7.81e-11 TTACTGTCCA AAAAATAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrXIII:320979-321327 + 36 9.97e-11 AGCCAAAAAA ATAAAAAATGGACGAGTCCGGAATCGAACC GGAGACCTCT chrX:422655-423346 - 38 1.12e-10 TCACAAAAAA AAAAAATGTGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrIV:1016961-1017494 + 22 1.12e-10 TAGAAAATAA AAAAGAAACTCCGAAGCGGGGAGTCGAACC CCGGTCTCCA chrXIV:632427-632854 - 61 1.80e-10 CTGAAATAAG AAAAAAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrXII:374209-374678 - 13 2.02e-10 TTGTCGGAGC AAAAAAATCTTCCCCGCCAGGACTTGAACC TGGAATCTTC chrXIII:362945-363287 - 48 2.27e-10 TTTGAAAAAA AAAGAAAATGCCATCTCCTAGAATCGAACC AGGGTTTCAT chrIV:802464-802982 + 50 2.54e-10 TAGAGTAAAA ATAAAAAGAGGTCCTACCCGGATTCGAACC GGGGTTGTCC chrIV:410144-410794 - 11 3.19e-10 GGAAAGTAAA AAATAATTTGGACGAGTCCGGAATCGAACC GGAGACCTCT chrVII:736201-736542 - 69 3.57e-10 AA AAAAACAACACTCACGATGGGGGTCGAACC CATAATCTTC chrVII:328409-328945 - 6 4.45e-10 TCAACTTACG ACAAAAAACTCCGATACGGGGAGTCGAACC CCGGT chrIII:168131-168532 + 12 4.96e-10 AAATCTGTAT TCAAAAAAAGGTCCTACCCGGATTCGAACC GGGGTTGTCC chrII:266211-266628 - 60 4.96e-10 TTTCAGTATT CAAAAAAATGCTTCCAATCGGATTTGAACC GATGATCTCC chrXIII:372180-372652 + 71 8.46e-10 GATAAAGTGC TAAAAAAATGATTTCGCCCAGGATCGAACT chrV:176888-177505 - 3 8.46e-10 GTAGCCATCA AAAAAGTACTCCGATACGGGGAGTCGAACC CC chrII:326559-327071 + 19 9.39e-10 TTAAAAAAAT AAAGAGTTTGATCCAACCGAGGTTCGAACT CGGGATCTTC chrXII:975730-976183 + 69 1.42e-09 TAATGCAAAA AAAATAAACGACCCCAGTGAGGGTTGAACT CA chrX:355193-355748 - 4 1.57e-09 ATCACGGAAG AAACAAAGCACTCACGATGGGGGTCGAACC CAT chrVII:541720-542136 - 22 1.57e-09 GAGGTAAGAA AAAGAACACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrIV:488512-489105 + 31 1.73e-09 TTACGATAAA AAAGATTCTGATCCAACCGAGGTTCGAACT CGGGATCTTC chrXVI:689380-689836 - 67 1.91e-09 CAAA AAATAATACGACACCAGCAGGATTTGAACC AGCGCGGGCA chrXI:162195-162756 + 54 1.91e-09 GACTGCTGGT GTAAAAAACACTCACGATGGGGGTCGAACC CATAATCTTC chrIII:123447-123789 + 1 3.43e-09 . AACAATGTGGGGCGAGCCGGGACTCGAACC CGGGACCTCC chrXII:627797-629167 - 44 3.77e-09 TTCGGAAGGC AAAAATAATGGTTGCTAAGAGATTCGAACT CTTGCATCTT chrIII:90885-91060 - 29 3.77e-09 TGTTGAGGAA AAAAATAATGGTTGCTAAGAGATTCGAACT CTTGCATCTT chrXV:274471-275000 - 67 4.14e-09 AAAA AAGAAATGCGTCACAGACAGGATTCGAACC TGCGCAGGTA chrXVI:744094-744570 - 52 6.57e-09 ACTTTAGGGA AAAAATTTTGCCACCTGTCAGAATTGAACT AACGACCTTT chrVII:823354-823697 - 59 6.57e-09 AATGTAATCT TCAAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrVII:730970-731374 - 67 7.87e-09 TCAA GCAAAAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrXIV:631535-632139 + 51 1.03e-08 GATAAAAATA AATCAATGGGGGCGAGCCGGGACTCGAACC CGGGACCTCC chrV:492226-492553 + 5 1.03e-08 AGAA AAATAATCCTTCCCCGCCAGGACTTGAACC TGGAATCTTC chrXI:578759-579329 - 45 1.12e-08 ATCTAAAAAA GTAAAGAACTCCTCATAGGGGGCTCGAACC CCTGACATTT chrIV:980744-981164 + 62 1.72e-08 GAAAATTTTT GGTAAAAACGACAACTGCAGGACTCGAACC TGCGCGGGC chrXVI:55906-56416 + 50 3.06e-08 ATGGGGAAAA AAATTAATTGAAACGGACAGGAATTGAACC TGCAACCCTT chrVII:857061-857644 + 68 3.06e-08 TATTGAAAAA AAAATTATTGGTTGCTAAGAGATTCGAACT CTT chrV:311741-312293 + 48 3.89e-08 GGTACAAAAA GATTTCATTGGACGCAACCGGAATCGAACC GATGACCTCT chrXIV:546549-547673 - 49 4.21e-08 CCTGTTTAGG CAGGAAGTCGCCCAAAGCGAGAATCATACC ACTAGACCAC chrXIII:195941-196297 + 56 4.21e-08 CCTGTTTAAT CAGGAAGTCGCCCAAAGCGAGAATCATACC ACTAGACCAC chrXII:92253-92880 - 48 4.21e-08 CCTGTTTATT CAGGAAGTCGCCCAAAGCGAGAATCATACC ACTAGACCAC chrI:138965-139348 - 62 4.21e-08 CTGTTTATT CAGGAAGTCGCCCAAAGCGAGAATCATACC ACTAGACCAC chrVII:779380-779930 - 61 5.74e-08 AAATTAAAAA AGTAATCTTGAGCGGTACGAGAATCGAACC CGTGTCCCCA chrVIII:466813-467280 - 44 1.39e-07 AAAATAATAC CGGTATAATGCCACCTGCCAGAATTGAACT AGCGACCTTT chrIV:946151-946595 - 56 4.93e-07 GTGCTTGACA TAAAAAAATCTCCCGGGGGCGAGTCGAACG CCCGATCTCA chrVII:115341-115715 + 64 7.57e-07 TTGCTTAAGC AAGGATACCGAAATGTCAGGGGTTCGAGCC CCCTATG chrIII:149702-150201 - 69 1.28e-06 AA AAATTTAATAGCGCCGCTCGGTTTCGATCC GAGGACATCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGVYCNMDVSSGGRWTCGAACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:550982-551586 1.3e-13 42_[+1]_28 chrVII:930201-931669 1.8e-13 59_[+1]_11 chrXV:226338-226887 2.2e-13 40_[+1]_30 chrX:531575-532246 5.2e-13 16_[-1]_54 chrX:396534-396939 7.2e-13 31_[+1]_39 chrXII:1051963-1052203 1e-12 29_[+1]_41 chrV:443037-443374 1e-12 38_[+1]_32 chrXII:214650-215059 2.2e-12 70_[+1] chrXVI:819330-819910 3e-12 10_[-1]_60 chrXII:448537-448842 9.6e-12 2_[+1]_68 chrVII:738881-739497 9.6e-12 34_[-1]_36 chrV:130799-131372 1.3e-11 38_[+1]_32 chrXIII:480429-480811 1.9e-11 42_[+1]_28 chrX:197152-197432 2.2e-11 62_[+1]_8 chrIII:151041-151595 2.5e-11 7_[+1]_63 chrXV:976286-976689 3.7e-11 34_[-1]_36 chrXIV:96051-96497 3.7e-11 8_[+1]_62 chrVI:180638-181265 4.7e-11 64_[+1]_6 chrIX:299992-300486 4.7e-11 30_[+1]_40 chrXIII:463348-463878 6.1e-11 40_[-1]_30 chrX:204557-205036 6.1e-11 38_[-1]_32 chrII:226985-227332 7.8e-11 26_[-1]_44 chrXIII:320979-321327 1e-10 35_[+1]_35 chrX:422655-423346 1.1e-10 37_[-1]_33 chrIV:1016961-1017494 1.1e-10 21_[+1]_49 chrXIV:632427-632854 1.8e-10 60_[-1]_10 chrXII:374209-374678 2e-10 12_[-1]_58 chrXIII:362945-363287 2.3e-10 47_[-1]_23 chrIV:802464-802982 2.5e-10 49_[+1]_21 chrIV:410144-410794 3.2e-10 10_[-1]_60 chrVII:736201-736542 3.6e-10 68_[-1]_2 chrVII:328409-328945 4.4e-10 5_[-1]_65 chrIII:168131-168532 5e-10 11_[+1]_59 chrII:266211-266628 5e-10 59_[-1]_11 chrXIII:372180-372652 8.5e-10 70_[+1] chrV:176888-177505 8.5e-10 2_[-1]_68 chrII:326559-327071 9.4e-10 18_[+1]_52 chrXII:975730-976183 1.4e-09 68_[+1]_2 chrX:355193-355748 1.6e-09 3_[-1]_67 chrVII:541720-542136 1.6e-09 21_[-1]_49 chrIV:488512-489105 1.7e-09 30_[+1]_40 chrXVI:689380-689836 1.9e-09 66_[-1]_4 chrXI:162195-162756 1.9e-09 53_[+1]_17 chrIII:123447-123789 3.4e-09 [+1]_70 chrXII:627797-629167 3.8e-09 43_[-1]_27 chrIII:90885-91060 3.8e-09 28_[-1]_42 chrXV:274471-275000 4.1e-09 66_[-1]_4 chrXVI:744094-744570 6.6e-09 51_[-1]_19 chrVII:823354-823697 6.6e-09 58_[-1]_12 chrVII:730970-731374 7.9e-09 66_[-1]_4 chrXIV:631535-632139 1e-08 50_[+1]_20 chrV:492226-492553 1e-08 4_[+1]_66 chrXI:578759-579329 1.1e-08 44_[-1]_26 chrIV:980744-981164 1.7e-08 61_[+1]_9 chrXVI:55906-56416 3.1e-08 49_[+1]_21 chrVII:857061-857644 3.1e-08 67_[+1]_3 chrV:311741-312293 3.9e-08 47_[+1]_23 chrXIV:546549-547673 4.2e-08 48_[-1]_22 chrXIII:195941-196297 4.2e-08 55_[+1]_15 chrXII:92253-92880 4.2e-08 47_[-1]_23 chrI:138965-139348 4.2e-08 61_[-1]_9 chrVII:779380-779930 5.7e-08 60_[-1]_10 chrVIII:466813-467280 1.4e-07 43_[-1]_27 chrIV:946151-946595 4.9e-07 55_[-1]_15 chrVII:115341-115715 7.6e-07 63_[+1]_7 chrIII:149702-150201 1.3e-06 68_[-1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGVYCNMDVSSGGRWTCGAACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAWYGVYCNMDVSSGGRWTCGAACC width=30 seqs=66 chrV:550982-551586 ( 43) AAAAAAAATGGTCTCTAGCGGGATCGAACC 1 chrVII:930201-931669 ( 60) GAAAAAAATGCGCAAGCCCGGAATCGAACC 1 chrXV:226338-226887 ( 41) AAAAAATTTGCGCAAGCCCGGAATCGAACC 1 chrX:531575-532246 ( 17) AAAGAAACTGCGCAAGCCCGGAATCGAACC 1 chrX:396534-396939 ( 32) AAAAGAAATGCGCAAGCCCGGAATCGAACC 1 chrXII:1051963-1052203 ( 30) AAAAATAATGGTCTCTAGCGGGATCGAACC 1 chrV:443037-443374 ( 39) AAAAAATATGGTCTCTAGCGGGATCGAACC 1 chrXII:214650-215059 ( 71) AAAATAAATGGACGCAACCGGAATCGAACC 1 chrXVI:819330-819910 ( 11) AAAATAAATGGTCTCTAGCGGGATCGAACC 1 chrXII:448537-448842 ( 3) AAAAAAGAAGGTCCTACCCGGATTCGAACC 1 chrVII:738881-739497 ( 35) AAAGTAAATGGTCTCTAGCGGGATCGAACC 1 chrV:130799-131372 ( 39) AAAAAAATAGGTCTTACCCGGATTCGAACC 1 chrXIII:480429-480811 ( 43) AAAAAAGAAGCCCTGTAGGGGGCTCGAACC 1 chrX:197152-197432 ( 63) AAAGAAATTGGACGAGTCCGGAATCGAACC 1 chrIII:151041-151595 ( 8) AAAAAGAAAGCCCTGTAGGGGGCTCGAACC 1 chrXV:976286-976689 ( 35) AAAAATATTGCTCCAGGGGAGGTTCGAACT 1 chrXIV:96051-96497 ( 9) AAAAAATTTGAGCGGTACGAGAATCGAACC 1 chrVI:180638-181265 ( 65) AAAAGGACTGCGCAAGCCCGGAATCGAACC 1 chrIX:299992-300486 ( 31) AAAAAGATAGCCCTGTAGGGGGCTCGAACC 1 chrXIII:463348-463878 ( 41) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrX:204557-205036 ( 39) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrII:226985-227332 ( 27) AAAAATAACGACAACTGCAGGACTCGAACC 1 chrXIII:320979-321327 ( 36) ATAAAAAATGGACGAGTCCGGAATCGAACC 1 chrX:422655-423346 ( 38) AAAAAATGTGCTCCAGGGGAGGTTCGAACT 1 chrIV:1016961-1017494 ( 22) AAAAGAAACTCCGAAGCGGGGAGTCGAACC 1 chrXIV:632427-632854 ( 61) AAAAAAAACGACCCCAGTGAGGGTTGAACT 1 chrXII:374209-374678 ( 13) AAAAAAATCTTCCCCGCCAGGACTTGAACC 1 chrXIII:362945-363287 ( 48) AAAGAAAATGCCATCTCCTAGAATCGAACC 1 chrIV:802464-802982 ( 50) ATAAAAAGAGGTCCTACCCGGATTCGAACC 1 chrIV:410144-410794 ( 11) AAATAATTTGGACGAGTCCGGAATCGAACC 1 chrVII:736201-736542 ( 69) AAAAACAACACTCACGATGGGGGTCGAACC 1 chrVII:328409-328945 ( 6) ACAAAAAACTCCGATACGGGGAGTCGAACC 1 chrIII:168131-168532 ( 12) TCAAAAAAAGGTCCTACCCGGATTCGAACC 1 chrII:266211-266628 ( 60) CAAAAAAATGCTTCCAATCGGATTTGAACC 1 chrXIII:372180-372652 ( 71) TAAAAAAATGATTTCGCCCAGGATCGAACT 1 chrV:176888-177505 ( 3) AAAAAGTACTCCGATACGGGGAGTCGAACC 1 chrII:326559-327071 ( 19) AAAGAGTTTGATCCAACCGAGGTTCGAACT 1 chrXII:975730-976183 ( 69) AAAATAAACGACCCCAGTGAGGGTTGAACT 1 chrX:355193-355748 ( 4) AAACAAAGCACTCACGATGGGGGTCGAACC 1 chrVII:541720-542136 ( 22) AAAGAACACTCCGATACGGGGAGTCGAACC 1 chrIV:488512-489105 ( 31) AAAGATTCTGATCCAACCGAGGTTCGAACT 1 chrXVI:689380-689836 ( 67) AAATAATACGACACCAGCAGGATTTGAACC 1 chrXI:162195-162756 ( 54) GTAAAAAACACTCACGATGGGGGTCGAACC 1 chrIII:123447-123789 ( 1) AACAATGTGGGGCGAGCCGGGACTCGAACC 1 chrXII:627797-629167 ( 44) AAAAATAATGGTTGCTAAGAGATTCGAACT 1 chrIII:90885-91060 ( 29) AAAAATAATGGTTGCTAAGAGATTCGAACT 1 chrXV:274471-275000 ( 67) AAGAAATGCGTCACAGACAGGATTCGAACC 1 chrXVI:744094-744570 ( 52) AAAAATTTTGCCACCTGTCAGAATTGAACT 1 chrVII:823354-823697 ( 59) TCAAAAAATGATTTCGCCCAGGATCGAACT 1 chrVII:730970-731374 ( 67) GCAAAAAACGACCCCAGTGAGGGTTGAACT 1 chrXIV:631535-632139 ( 51) AATCAATGGGGGCGAGCCGGGACTCGAACC 1 chrV:492226-492553 ( 5) AAATAATCCTTCCCCGCCAGGACTTGAACC 1 chrXI:578759-579329 ( 45) GTAAAGAACTCCTCATAGGGGGCTCGAACC 1 chrIV:980744-981164 ( 62) GGTAAAAACGACAACTGCAGGACTCGAACC 1 chrXVI:55906-56416 ( 50) AAATTAATTGAAACGGACAGGAATTGAACC 1 chrVII:857061-857644 ( 68) AAAATTATTGGTTGCTAAGAGATTCGAACT 1 chrV:311741-312293 ( 48) GATTTCATTGGACGCAACCGGAATCGAACC 1 chrXIV:546549-547673 ( 49) CAGGAAGTCGCCCAAAGCGAGAATCATACC 1 chrXIII:195941-196297 ( 56) CAGGAAGTCGCCCAAAGCGAGAATCATACC 1 chrXII:92253-92880 ( 48) CAGGAAGTCGCCCAAAGCGAGAATCATACC 1 chrI:138965-139348 ( 62) CAGGAAGTCGCCCAAAGCGAGAATCATACC 1 chrVII:779380-779930 ( 61) AGTAATCTTGAGCGGTACGAGAATCGAACC 1 chrVIII:466813-467280 ( 44) CGGTATAATGCCACCTGCCAGAATTGAACT 1 chrIV:946151-946595 ( 56) TAAAAAAATCTCCCGGGGGCGAGTCGAACG 1 chrVII:115341-115715 ( 64) AAGGATACCGAAATGTCAGGGGTTCGAGCC 1 chrIII:149702-150201 ( 69) AAATTTAATAGCGCCGCTCGGTTTCGATCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGVYCNMDVSSGGRWTCGAACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 31382 bayes= 7.15941 E= 3.4e-237 129 -107 -107 -235 143 -166 -207 -235 141 -366 -85 -235 114 -266 -7 -154 143 -1269 -207 -135 114 -266 -107 -65 111 -266 -85 -65 78 -134 -134 4 -154 93 -266 70 -235 -366 204 -118 -54 115 66 -235 -154 115 -49 11 -118 177 -85 -154 -18 87 -7 -65 4 115 -34 -154 11 -1269 93 -3 11 104 25 -276 -235 147 51 -118 -154 99 139 -434 4 -366 180 -1269 -1269 -1269 239 -1269 108 -1269 80 -434 51 -34 -20 -35 -1269 -1269 -1269 170 -1269 210 -1269 -76 -235 -1269 230 -1269 160 -1269 -1269 -235 165 -1269 -366 -434 -1269 239 -1269 -1269 -1269 201 -366 -54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGVYCNMDVSSGGRWTCGAACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 66 E= 3.4e-237 0.757576 0.090909 0.090909 0.060606 0.833333 0.060606 0.045455 0.060606 0.818182 0.015152 0.106061 0.060606 0.681818 0.030303 0.181818 0.106061 0.833333 0.000000 0.045455 0.121212 0.681818 0.030303 0.090909 0.196970 0.666667 0.030303 0.106061 0.196970 0.530303 0.075758 0.075758 0.318182 0.106061 0.363636 0.030303 0.500000 0.060606 0.015152 0.787879 0.136364 0.212121 0.424242 0.303030 0.060606 0.106061 0.424242 0.136364 0.333333 0.136364 0.651515 0.106061 0.106061 0.272727 0.348485 0.181818 0.196970 0.318182 0.424242 0.151515 0.106061 0.333333 0.000000 0.363636 0.303030 0.333333 0.393939 0.227273 0.045455 0.060606 0.530303 0.272727 0.136364 0.106061 0.378788 0.500000 0.015152 0.318182 0.015152 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.651515 0.000000 0.333333 0.015152 0.439394 0.151515 0.166667 0.242424 0.000000 0.000000 0.000000 1.000000 0.000000 0.818182 0.000000 0.181818 0.060606 0.000000 0.939394 0.000000 0.939394 0.000000 0.000000 0.060606 0.969697 0.000000 0.015152 0.015152 0.000000 1.000000 0.000000 0.000000 0.000000 0.772727 0.015152 0.212121 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAWYGVYCNMDVSSGGRWTCGAACC MEME-1 regular expression -------------------------------------------------------------------------------- AAAAAAA[AT][TC]G[CGA][CT]C[CA][CA][GAT][CAG][CG][GC][GA]G[AG][AT]TCGAAC[CT] -------------------------------------------------------------------------------- Time 185.60 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCCNRRTKGKTARSGCGYCNGACTHNWAA MEME-2 width = 30 sites = 57 llr = 1069 E-value = 5.3e-193 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCCNRRTKGKTARSGCGYCNGACTHNWAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 11:13541:::1a52::1123:7::33389 pos.-specific C :276311:1:12:13:a:352218:321:: probability G 673232334961:45a:911272::1312: matrix T 3::122264137:::::15231:2a325:1 bits 2.4 ** 2.1 ** 1.9 ** 1.7 * * *** ** Relative 1.4 * * * *** ** Entropy 1.2 ** * * *** * ** * (27.1 bits) 1.0 ** * * *** * ** ** 0.7 **** ** ****** **** ** 0.5 **** *********** * **** ** 0.2 **** *************** **** *** 0.0 ------------------------------ Multilevel GGCCAAATGGGTAAGGCGTCAGACTTATAA consensus TCGGCGGGT T GC C T G AGA sequence G A CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCNRRTKGKTARSGCGYCNGACTHNWAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXV:353913-354328 - 6 2.71e-14 CTGCTTCTAT GGCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGG chrXIV:104617-105026 + 42 2.71e-14 CAGCTTCTAT GGCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrVIII:115980-116401 - 2 2.71e-14 GAGCTTCTAT GGCCAAGTTGGTAAGGCGCCACACTAGTAA T chrII:266211-266628 + 17 2.71e-14 CTGCTTCTAT GGCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrXVI:689380-689836 + 15 1.04e-13 TGGGCACTAT GGCCGAGTGGTTAAGGCGACAGACTTGAAA TCTGTTGGGC chrV:288150-288883 - 21 1.04e-13 TAGGCACTAT GGCCGAGTGGTTAAGGCGACAGACTTGAAA TCTGTTGGGC chrX:414714-415240 + 47 8.85e-12 TAGCCTTGTT GGCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrV:435659-436008 - 4 8.85e-12 GAGCCTTGTT GGCGCAATCGGTAGCGCGTATGACTCTTAA TCA chrIV:1201553-1201994 + 35 8.85e-12 TAGCCTTGTT GGCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrIII:151041-151595 - 51 8.85e-12 GAGCCTTGTT GGCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrXV:340148-340592 - 14 2.82e-11 TGTTCCTCGT GGCCCAATGGTCACGGCGTCTGGCTACGAA CCAGAAGATT chrXI:490769-491164 + 60 2.82e-11 TGTTCCTCGT GGCCCAATGGTCACGGCGTCTGGCTACGAA CCAGAAGATT chrV:492226-492553 - 48 2.82e-11 TATTCCTCGT GGCCCAATGGTCACGGCGTCTGGCTACGAA CCAGAAGATT chrIV:619718-620371 - 10 2.82e-11 TGTTCCTCGT GGCCCAATGGTCACGGCGTCTGGCTACGAA CCAGAAGAT chrIII:227741-228211 + 24 3.23e-11 ATGGCACTAT GGCCGAGTGGTTAAGGCGAGAGACTCGAAT GGAATAAAAA chrXIII:259045-259375 - 42 4.85e-11 ATGGCAACTT GGCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrXII:167789-168240 - 24 4.85e-11 ATGGCAACTT GGCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrIV:437548-437977 + 68 4.85e-11 AAGGCAACTT GGCCGAGTGGTTAAGGCGAAAGATTAGAAA TCT chrXIII:747760-748157 - 19 1.19e-10 CTAGCTCGCG TGGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrXIII:131621-132118 - 41 1.19e-10 TTAGCTCGCG TGGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrX:374203-374894 - 43 1.19e-10 GTAGCTCGCG TGGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrVII:736201-736542 + 26 1.19e-10 ATAGCTCGCG TGGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrII:405598-406210 + 31 1.19e-10 GTAGCTCGCG TGGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrXV:853696-854788 - 30 4.87e-10 CAGGGCACAT GGCGCAGTTGGTAGCGCGCTTCCCTTGCAA GGAAGAGGTC chrXVI:338450-339366 - 25 7.53e-10 AGCAGCGCCG TGGCGCAGTGGAAGCGCGCAGGGCTCATAA CCCTGATGTC chrX:517662-518087 - 24 7.53e-10 TTAAGCGCCG TGGCGCAGTGGAAGCGCGCAGGGCTCATAA CCCTGATGTC chrIII:149702-150201 + 26 7.53e-10 TTGAGCGCCG TGGCGCAGTGGAAGCGCGCAGGGCTCATAA CCCTGATGTC chrVII:115341-115715 + 18 1.15e-09 CATCCTTGTT AGCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrXV:228111-228530 + 70 1.41e-09 AGACTCCATG GCCAAGTTGGTTAAGGCGTGCGACTGTTAA T chrXIV:632427-632854 + 18 1.41e-09 TGACTCCATG GCCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrVII:730970-731374 + 24 1.41e-09 AGACTCCATG GCCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrIII:127585-127869 + 48 1.41e-09 TGACTCCATG GCCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrVIII:358284-358759 - 61 2.10e-09 AAGCGGATTT AGCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrVII:440538-441028 - 37 2.10e-09 ATGCGGATTT AGCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrII:36235-36586 + 46 2.10e-09 AAGCGGATTT AGCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAACTTCGG chrXIV:602099-602503 + 70 3.39e-09 TGGTCTCTTG GCCCAGTTGGTTAAGGCACCGTGCTAATAA C chrXIV:569675-570163 - 33 3.39e-09 TGGTCTCTTG GCCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrIX:183295-183702 - 27 3.39e-09 TGGTCTCTTG GCCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrX:424291-424722 - 21 6.41e-09 TGGAGGGTTG GCCGAGTGGTCTAAGGCGGCAGACTTAAGA TCTGTTGGAC chrIV:519658-519899 + 24 6.41e-09 CGGAGGGTTG GCCGAGTGGTCTAAGGCGGCAGACTTAAGA TCTGTTGGAC chrII:642864-643249 - 36 9.07e-09 AAAGCTCGTA TGGCGCAGTGGTAGCGCAGCAGATTGCAAA TCTGTTGGTC chrXVI:744094-744570 + 9 1.17e-08 AGCCTCCT TAGCTTAGTGGTAGAGCGTTGCACTTGTAA TGCAAAGGTC chrVIII:466813-467280 + 1 1.17e-08 . TAGCTTAGTGGTAGAGCGTTGCACTTGTAA TGCAAAGGTC chrVII:1004054-1004407 + 43 1.17e-08 TTTGCCTCCT TAGCTTAGTGGTAGAGCGTTGCACTTGTAA TGCAAAGGTC chrVII:661545-661938 + 65 1.17e-08 TTTGCCTCCT TAGCTTAGTGGTAGAGCGTTGCACTTGTAA TGCAAA chrVII:422880-423310 + 56 1.62e-08 TGGTTGTTTG GCCGAGCGGTCTAAGGCGCCTGATTCAAGA AATATCTTGA chrVII:205315-205740 + 53 1.62e-08 TGGTTGTTTG GCCGAGCGGTCTAAGGCGCCTGATTCAAGA AATATCTTGA chrI:180947-181445 + 4 1.62e-08 TTG GCCGAGCGGTCTAAGGCGCCTGATTCAAGA AATATCTTGA chrX:617707-618229 + 10 5.41e-08 GGGAGTTTG GCCGAGTGGTTTAAGGCGTCAGATTTAGGT GGATTTAACC chrXI:302693-303188 + 35 5.80e-08 GATGAAGCGG TGGCTCAATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrX:415748-416237 - 58 5.80e-08 GTTGAAGCGG TGGCTCAATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrVII:287240-287658 - 20 5.80e-08 GATGAAGCGG TGGCTCAATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrXVI:856726-857118 + 38 8.73e-08 TCGGGCGTGT GGCGTAGTCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrVII:774135-774584 + 48 8.73e-08 TTGGGCGTGT GGCGTAGTCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrXI:83991-84428 + 58 1.06e-07 TGGAGGGTTG GCCGAGTGGTCTAATGCGGCAGACTTAAGA TCTGTTGGAC chrIV:1175592-1176054 + 64 1.06e-07 AAGCTTCAGT AGCTCAGTAGGAAGAGCGTCAGTCTCATAA TCTGAAG chrXII:605154-605640 - 48 2.64e-07 ATGCTCGTGT AGCTCAGTGGTTAGAGCTTCGTGCTTATAG CAACATTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCNRRTKGKTARSGCGYCNGACTHNWAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:353913-354328 2.7e-14 5_[-2]_65 chrXIV:104617-105026 2.7e-14 41_[+2]_29 chrVIII:115980-116401 2.7e-14 1_[-2]_69 chrII:266211-266628 2.7e-14 16_[+2]_54 chrXVI:689380-689836 1e-13 14_[+2]_56 chrV:288150-288883 1e-13 20_[-2]_50 chrX:414714-415240 8.8e-12 46_[+2]_24 chrV:435659-436008 8.8e-12 3_[-2]_67 chrIV:1201553-1201994 8.8e-12 34_[+2]_36 chrIII:151041-151595 8.8e-12 50_[-2]_20 chrXV:340148-340592 2.8e-11 13_[-2]_57 chrXI:490769-491164 2.8e-11 59_[+2]_11 chrV:492226-492553 2.8e-11 47_[-2]_23 chrIV:619718-620371 2.8e-11 9_[-2]_61 chrIII:227741-228211 3.2e-11 23_[+2]_47 chrXIII:259045-259375 4.8e-11 41_[-2]_29 chrXII:167789-168240 4.8e-11 23_[-2]_47 chrIV:437548-437977 4.8e-11 67_[+2]_3 chrXIII:747760-748157 1.2e-10 18_[-2]_52 chrXIII:131621-132118 1.2e-10 40_[-2]_30 chrX:374203-374894 1.2e-10 42_[-2]_28 chrVII:736201-736542 1.2e-10 25_[+2]_45 chrII:405598-406210 1.2e-10 30_[+2]_40 chrXV:853696-854788 4.9e-10 29_[-2]_41 chrXVI:338450-339366 7.5e-10 24_[-2]_46 chrX:517662-518087 7.5e-10 23_[-2]_47 chrIII:149702-150201 7.5e-10 25_[+2]_45 chrVII:115341-115715 1.1e-09 17_[+2]_53 chrXV:228111-228530 1.4e-09 69_[+2]_1 chrXIV:632427-632854 1.4e-09 17_[+2]_53 chrVII:730970-731374 1.4e-09 23_[+2]_47 chrIII:127585-127869 1.4e-09 47_[+2]_23 chrVIII:358284-358759 2.1e-09 60_[-2]_10 chrVII:440538-441028 2.1e-09 36_[-2]_34 chrII:36235-36586 2.1e-09 45_[+2]_25 chrXIV:602099-602503 3.4e-09 69_[+2]_1 chrXIV:569675-570163 3.4e-09 32_[-2]_38 chrIX:183295-183702 3.4e-09 26_[-2]_44 chrX:424291-424722 6.4e-09 20_[-2]_50 chrIV:519658-519899 6.4e-09 23_[+2]_47 chrII:642864-643249 9.1e-09 35_[-2]_35 chrXVI:744094-744570 1.2e-08 8_[+2]_62 chrVIII:466813-467280 1.2e-08 [+2]_70 chrVII:1004054-1004407 1.2e-08 42_[+2]_28 chrVII:661545-661938 1.2e-08 64_[+2]_6 chrVII:422880-423310 1.6e-08 55_[+2]_15 chrVII:205315-205740 1.6e-08 52_[+2]_18 chrI:180947-181445 1.6e-08 3_[+2]_67 chrX:617707-618229 5.4e-08 9_[+2]_61 chrXI:302693-303188 5.8e-08 34_[+2]_36 chrX:415748-416237 5.8e-08 57_[-2]_13 chrVII:287240-287658 5.8e-08 19_[-2]_51 chrXVI:856726-857118 8.7e-08 37_[+2]_33 chrVII:774135-774584 8.7e-08 47_[+2]_23 chrXI:83991-84428 1.1e-07 57_[+2]_13 chrIV:1175592-1176054 1.1e-07 63_[+2]_7 chrXII:605154-605640 2.6e-07 47_[-2]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCNRRTKGKTARSGCGYCNGACTHNWAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCCNRRTKGKTARSGCGYCNGACTHNWAA width=30 seqs=57 chrXV:353913-354328 ( 6) GGCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrXIV:104617-105026 ( 42) GGCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrVIII:115980-116401 ( 2) GGCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrII:266211-266628 ( 17) GGCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrXVI:689380-689836 ( 15) GGCCGAGTGGTTAAGGCGACAGACTTGAAA 1 chrV:288150-288883 ( 21) GGCCGAGTGGTTAAGGCGACAGACTTGAAA 1 chrX:414714-415240 ( 47) GGCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrV:435659-436008 ( 4) GGCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrIV:1201553-1201994 ( 35) GGCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrIII:151041-151595 ( 51) GGCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrXV:340148-340592 ( 14) GGCCCAATGGTCACGGCGTCTGGCTACGAA 1 chrXI:490769-491164 ( 60) GGCCCAATGGTCACGGCGTCTGGCTACGAA 1 chrV:492226-492553 ( 48) GGCCCAATGGTCACGGCGTCTGGCTACGAA 1 chrIV:619718-620371 ( 10) GGCCCAATGGTCACGGCGTCTGGCTACGAA 1 chrIII:227741-228211 ( 24) GGCCGAGTGGTTAAGGCGAGAGACTCGAAT 1 chrXIII:259045-259375 ( 42) GGCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrXII:167789-168240 ( 24) GGCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrIV:437548-437977 ( 68) GGCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrXIII:747760-748157 ( 19) TGGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrXIII:131621-132118 ( 41) TGGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrX:374203-374894 ( 43) TGGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrVII:736201-736542 ( 26) TGGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrII:405598-406210 ( 31) TGGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrXV:853696-854788 ( 30) GGCGCAGTTGGTAGCGCGCTTCCCTTGCAA 1 chrXVI:338450-339366 ( 25) TGGCGCAGTGGAAGCGCGCAGGGCTCATAA 1 chrX:517662-518087 ( 24) TGGCGCAGTGGAAGCGCGCAGGGCTCATAA 1 chrIII:149702-150201 ( 26) TGGCGCAGTGGAAGCGCGCAGGGCTCATAA 1 chrVII:115341-115715 ( 18) AGCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrXV:228111-228530 ( 70) GCCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrXIV:632427-632854 ( 18) GCCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrVII:730970-731374 ( 24) GCCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrIII:127585-127869 ( 48) GCCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrVIII:358284-358759 ( 61) AGCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrVII:440538-441028 ( 37) AGCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrII:36235-36586 ( 46) AGCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrXIV:602099-602503 ( 70) GCCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrXIV:569675-570163 ( 33) GCCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrIX:183295-183702 ( 27) GCCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrX:424291-424722 ( 21) GCCGAGTGGTCTAAGGCGGCAGACTTAAGA 1 chrIV:519658-519899 ( 24) GCCGAGTGGTCTAAGGCGGCAGACTTAAGA 1 chrII:642864-643249 ( 36) TGGCGCAGTGGTAGCGCAGCAGATTGCAAA 1 chrXVI:744094-744570 ( 9) TAGCTTAGTGGTAGAGCGTTGCACTTGTAA 1 chrVIII:466813-467280 ( 1) TAGCTTAGTGGTAGAGCGTTGCACTTGTAA 1 chrVII:1004054-1004407 ( 43) TAGCTTAGTGGTAGAGCGTTGCACTTGTAA 1 chrVII:661545-661938 ( 65) TAGCTTAGTGGTAGAGCGTTGCACTTGTAA 1 chrVII:422880-423310 ( 56) GCCGAGCGGTCTAAGGCGCCTGATTCAAGA 1 chrVII:205315-205740 ( 53) GCCGAGCGGTCTAAGGCGCCTGATTCAAGA 1 chrI:180947-181445 ( 4) GCCGAGCGGTCTAAGGCGCCTGATTCAAGA 1 chrX:617707-618229 ( 10) GCCGAGTGGTTTAAGGCGTCAGATTTAGGT 1 chrXI:302693-303188 ( 35) TGGCTCAATGGTAGAGCTTTCGACTCCAAT 1 chrX:415748-416237 ( 58) TGGCTCAATGGTAGAGCTTTCGACTCCAAT 1 chrVII:287240-287658 ( 20) TGGCTCAATGGTAGAGCTTTCGACTCCAAT 1 chrXVI:856726-857118 ( 38) GGCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 chrVII:774135-774584 ( 48) GGCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 chrXI:83991-84428 ( 58) GCCGAGTGGTCTAATGCGGCAGACTTAAGA 1 chrIV:1175592-1176054 ( 64) AGCTCAGTAGGAAGAGCGTCAGTCTCATAA 1 chrXII:605154-605640 ( 48) AGCTCAGTGGTTAGAGCTTCGTGCTTATAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCNRRTKGKTARSGCGYCNGACTHNWAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 31382 bayes= 9.72649 E= 5.3e-193 -155 -1248 168 -14 -214 36 184 -1248 -1248 191 55 -1248 -214 160 36 -155 3 46 46 -97 62 -64 36 -97 45 -186 80 -68 -114 -1248 46 95 -413 -86 120 51 -1248 -1248 220 -133 -1248 -86 155 11 -214 -28 -186 122 170 -1248 -1248 -1248 72 -145 114 -1248 -44 55 131 -413 -1248 -1248 239 -1248 -1248 239 -1248 -1248 -214 -1248 217 -214 -155 80 -145 67 -82 151 -112 -68 11 -12 1 -5 -1248 1 195 -214 122 -186 14 -413 -1248 211 -1248 -82 -1248 -1248 -1248 170 -14 46 -45 3 3 25 64 -97 11 -186 -112 77 142 -1248 -12 -1248 148 -1248 -344 -133 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCNRRTKGKTARSGCGYCNGACTHNWAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 57 E= 5.3e-193 0.105263 0.000000 0.614035 0.280702 0.070175 0.245614 0.684211 0.000000 0.000000 0.719298 0.280702 0.000000 0.070175 0.578947 0.245614 0.105263 0.315789 0.263158 0.263158 0.157895 0.473684 0.122807 0.245614 0.157895 0.421053 0.052632 0.333333 0.192982 0.140351 0.000000 0.263158 0.596491 0.017544 0.105263 0.438596 0.438596 0.000000 0.000000 0.877193 0.122807 0.000000 0.105263 0.561404 0.333333 0.070175 0.157895 0.052632 0.719298 1.000000 0.000000 0.000000 0.000000 0.508772 0.070175 0.421053 0.000000 0.228070 0.280702 0.473684 0.017544 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.070175 0.000000 0.859649 0.070175 0.105263 0.333333 0.070175 0.491228 0.175439 0.543860 0.087719 0.192982 0.333333 0.175439 0.192982 0.298246 0.000000 0.192982 0.736842 0.070175 0.719298 0.052632 0.210526 0.017544 0.000000 0.824561 0.000000 0.175439 0.000000 0.000000 0.000000 1.000000 0.280702 0.263158 0.140351 0.315789 0.315789 0.228070 0.298246 0.157895 0.333333 0.052632 0.087719 0.526316 0.824561 0.000000 0.175439 0.000000 0.859649 0.000000 0.017544 0.122807 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCNRRTKGKTARSGCGYCNGACTHNWAA MEME-2 regular expression -------------------------------------------------------------------------------- [GT][GC][CG][CG][ACG][AG][AG][TG][GT]G[GT]TA[AG][GCA]GCG[TC]C[AT]G[AG]CT[TAC][AGC][TA]AA -------------------------------------------------------------------------------- Time 354.24 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGTGTARYGGYTATCACHTYMCGYTTTCA MEME-3 width = 30 sites = 13 llr = 412 E-value = 4.5e-070 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGTGTARYGGYTATCACHTYMCGYTTTCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a::::a4:::::a::a:4::6:::::1:a pos.-specific C ::::::::5::5:::a:82263735:227: probability G ::a:a::6:aa:::::::1::137::::3: matrix T a::a:a::5::5a:a::2384:::5a87:: bits 2.4 * * ** * 2.1 * * ** * 1.9 * * ** * 1.7 ******* ** ***** * * Relative 1.4 ******* ** ****** ** * ** Entropy 1.2 ******** ** ****** ** ** ** ** (45.7 bits) 1.0 ****************** ** ***** ** 0.7 ****************** *********** 0.5 ****************** *********** 0.2 ****************** *********** 0.0 ------------------------------ Multilevel TAGTGTAGTGGTTATCACATCACGCTTTCA consensus AC C TTCTCGCT CG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTGTARYGGYTATCACHTYMCGYTTTCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIII:290498-291087 + 66 3.57e-17 TAATCCGATA TAGTGTAACGGCTATCACATCACGCTTTCA CCGTG chrXI:140679-141471 - 28 3.57e-17 TAATCCGATA TAGTGTAACGGCTATCACATCACGCTTTCA CCGTGGAGAC chrV:354696-355206 + 40 3.57e-17 TAATCCGATA TAGTGTAACGGCTATCACATCACGCTTTCA CCGTGGAGAC chrII:644954-645415 + 40 3.57e-17 TTATCCGATA TAGTGTAACGGCTATCACATCACGCTTTCA CCGTGGAGAC chrIV:1016961-1017494 - 65 1.64e-15 CCGATG TAGTGTAACGGCTATCACATCACGTTCTCA CCGTGGAGAC chrXII:448537-448842 - 46 7.73e-15 TCCGGTCCTA TAGTGTAGTGGTTATCACTTTCGGTTTTGA TCCGGACAAC chrIV:645065-645362 - 25 7.73e-15 TACGGTCCTA TAGTGTAGTGGTTATCACTTTCGGTTTTGA TCCGGACAAC chrIII:168131-168532 - 55 7.73e-15 CCTGGTCCTA TAGTGTAGTGGTTATCACTTTCGGTTTTGA TCCGGACAAC chrII:350610-351028 + 65 7.73e-15 AAGGGTTTTA TAGTGTAGTGGTTATCACTTTCGGTTTTGA TCCGGA chrXV:110879-111193 - 11 1.06e-14 CCCGGGCGGT TAGTGTAGTGGTTATCATCCCACCCTTCCA AGGTGGGGAC chrXIV:96051-96497 - 52 1.06e-14 CATGGGCGGT TAGTGTAGTGGTTATCATCCCACCCTTCCA AGGTGGGGAC chrVII:779380-779930 + 18 1.06e-14 CCCGGGCGGT TAGTGTAGTGGTTATCATCCCACCCTTCCA AGGTGGGGAC chrIV:1075341-1075744 - 16 6.27e-14 ATTGTTCCAA TAGTGTAGCGGCTATCACGTTGCCTTCACA CGGCAAAGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTGTARYGGYTATCACHTYMCGYTTTCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:290498-291087 3.6e-17 65_[+3]_5 chrXI:140679-141471 3.6e-17 27_[-3]_43 chrV:354696-355206 3.6e-17 39_[+3]_31 chrII:644954-645415 3.6e-17 39_[+3]_31 chrIV:1016961-1017494 1.6e-15 64_[-3]_6 chrXII:448537-448842 7.7e-15 45_[-3]_25 chrIV:645065-645362 7.7e-15 24_[-3]_46 chrIII:168131-168532 7.7e-15 54_[-3]_16 chrII:350610-351028 7.7e-15 64_[+3]_6 chrXV:110879-111193 1.1e-14 10_[-3]_60 chrXIV:96051-96497 1.1e-14 51_[-3]_19 chrVII:779380-779930 1.1e-14 17_[+3]_53 chrIV:1075341-1075744 6.3e-14 15_[-3]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTGTARYGGYTATCACHTYMCGYTTTCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGTGTARYGGYTATCACHTYMCGYTTTCA width=30 seqs=13 chrXIII:290498-291087 ( 66) TAGTGTAACGGCTATCACATCACGCTTTCA 1 chrXI:140679-141471 ( 28) TAGTGTAACGGCTATCACATCACGCTTTCA 1 chrV:354696-355206 ( 40) TAGTGTAACGGCTATCACATCACGCTTTCA 1 chrII:644954-645415 ( 40) TAGTGTAACGGCTATCACATCACGCTTTCA 1 chrIV:1016961-1017494 ( 65) TAGTGTAACGGCTATCACATCACGTTCTCA 1 chrXII:448537-448842 ( 46) TAGTGTAGTGGTTATCACTTTCGGTTTTGA 1 chrIV:645065-645362 ( 25) TAGTGTAGTGGTTATCACTTTCGGTTTTGA 1 chrIII:168131-168532 ( 55) TAGTGTAGTGGTTATCACTTTCGGTTTTGA 1 chrII:350610-351028 ( 65) TAGTGTAGTGGTTATCACTTTCGGTTTTGA 1 chrXV:110879-111193 ( 11) TAGTGTAGTGGTTATCATCCCACCCTTCCA 1 chrXIV:96051-96497 ( 52) TAGTGTAGTGGTTATCATCCCACCCTTCCA 1 chrVII:779380-779930 ( 18) TAGTGTAGTGGTTATCATCCCACCCTTCCA 1 chrIV:1075341-1075744 ( 16) TAGTGTAGCGGCTATCACGTTGCCTTCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTGTARYGGYTATCACHTYMCGYTTTCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 31382 bayes= 11.7673 E= 4.5e-070 -1035 -1035 -1035 169 169 -1035 -1035 -1035 -1035 -1035 239 -1035 -1035 -1035 -1035 169 -1035 -1035 239 -1035 -1035 -1035 -1035 169 169 -1035 -1035 -1035 32 -1035 169 -1035 -1035 127 -1035 80 -1035 -1035 239 -1035 -1035 -1035 239 -1035 -1035 127 -1035 80 -1035 -1035 -1035 169 169 -1035 -1035 -1035 -1035 -1035 -1035 169 -1035 239 -1035 -1035 169 -1035 -1035 -1035 -1035 201 -1035 -42 32 27 -131 -1 -1035 27 -1035 132 -1035 169 -1035 32 99 69 -131 -1035 -1035 186 69 -1035 -1035 69 186 -1035 -1035 149 -1035 58 -1035 -1035 -1035 169 -1035 -31 -1035 145 -200 27 -1035 116 -1035 186 69 -1035 169 -1035 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTGTARYGGYTATCACHTYMCGYTTTCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 13 E= 4.5e-070 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.384615 0.000000 0.615385 0.000000 0.000000 0.461538 0.000000 0.538462 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.461538 0.000000 0.538462 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.769231 0.000000 0.230769 0.384615 0.230769 0.076923 0.307692 0.000000 0.230769 0.000000 0.769231 0.000000 0.615385 0.000000 0.384615 0.615385 0.307692 0.076923 0.000000 0.000000 0.692308 0.307692 0.000000 0.000000 0.307692 0.692308 0.000000 0.000000 0.538462 0.000000 0.461538 0.000000 0.000000 0.000000 1.000000 0.000000 0.153846 0.000000 0.846154 0.076923 0.230769 0.000000 0.692308 0.000000 0.692308 0.307692 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTGTARYGGYTATCACHTYMCGYTTTCA MEME-3 regular expression -------------------------------------------------------------------------------- TAGTGTA[GA][TC]GG[TC]TATCA[CT][ATC][TC][CT][AC][CG][GC][CT]TT[TC][CG]A -------------------------------------------------------------------------------- Time 516.15 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71796-73264 7.96e-01 100 chrI:81876-82400 6.55e-01 100 chrI:138965-139348 1.63e-05 61_[-1(4.21e-08)]_9 chrI:141174-141897 3.88e-01 100 chrI:166177-166563 9.33e-01 100 chrI:180947-181445 1.32e-04 3_[+2(1.62e-08)]_67 chrI:182146-183178 9.12e-01 100 chrII:9371-10161 9.85e-01 100 chrII:36235-36586 1.16e-05 45_[+2(2.10e-09)]_25 chrII:44996-45338 3.83e-01 100 chrII:60850-61997 3.23e-01 100 chrII:89660-90168 7.90e-01 100 chrII:165090-165401 1.51e-01 100 chrII:167926-168157 3.35e-01 100 chrII:181307-181677 1.87e-01 100 chrII:197115-197829 9.30e-01 100 chrII:226985-227332 1.36e-06 26_[-1(7.81e-11)]_44 chrII:266211-266628 5.78e-17 16_[+2(2.71e-14)]_13_[-1(4.96e-10)]_\ 11 chrII:326559-327071 8.58e-07 18_[+1(9.39e-10)]_52 chrII:332348-332872 6.69e-01 100 chrII:347412-348065 2.24e-01 100 chrII:350610-351028 2.07e-12 64_[+3(7.73e-15)]_6 chrII:405598-406210 4.34e-08 30_[+2(1.19e-10)]_40 chrII:415583-416893 4.09e-01 100 chrII:444749-445013 7.31e-01 100 chrII:477035-477713 3.66e-01 100 chrII:592899-593318 8.97e-01 100 chrII:603798-605489 4.68e-01 100 chrII:605670-606113 6.58e-02 100 chrII:642864-643249 4.49e-05 35_[-2(9.07e-09)]_35 chrII:644954-645415 1.00e-13 39_[+3(3.57e-17)]_31 chrIII:81616-82702 6.79e-01 100 chrIII:90885-91060 1.38e-05 28_[-1(3.77e-09)]_42 chrIII:123447-123789 6.68e-06 [+1(3.43e-09)]_70 chrIII:127585-127869 8.44e-06 47_[+2(1.41e-09)]_23 chrIII:142631-142987 2.34e-01 100 chrIII:149702-150201 4.28e-09 25_[+2(7.53e-10)]_13_[-1(1.28e-06)]_\ 2 chrIII:151041-151595 1.03e-15 7_[+1(2.49e-11)]_13_[-2(8.85e-12)]_\ 20 chrIII:163472-163873 7.90e-01 100 chrIII:168131-168532 1.34e-17 11_[+1(4.96e-10)]_13_[-3(7.73e-15)]_\ 16 chrIII:178124-178701 3.97e-01 100 chrIII:227741-228211 4.35e-07 23_[+2(3.23e-11)]_47 chrIII:262724-263087 9.65e-01 100 chrIII:295312-296004 6.58e-01 100 chrIV:83443-84093 4.09e-01 100 chrIV:117165-117865 5.85e-01 100 chrIV:130141-130974 9.42e-01 100 chrIV:205392-209721 3.77e-01 100 chrIV:209966-210607 9.74e-01 100 chrIV:221982-222297 2.62e-01 100 chrIV:308050-308527 7.87e-01 100 chrIV:309798-310158 2.35e-01 100 chrIV:341286-342350 7.64e-01 100 chrIV:357998-358482 2.02e-01 100 chrIV:359354-359762 6.50e-01 100 chrIV:382494-384739 1.65e-01 100 chrIV:410144-410794 2.83e-06 10_[-1(3.19e-10)]_60 chrIV:411268-411657 8.28e-01 100 chrIV:433580-434863 3.78e-01 100 chrIV:437548-437977 7.83e-07 67_[+2(4.85e-11)]_3 chrIV:488512-489105 5.30e-06 30_[+1(1.73e-09)]_40 chrIV:519658-519899 6.68e-06 23_[+2(6.41e-09)]_47 chrIV:520678-521106 8.74e-01 100 chrIV:568687-569798 3.53e-01 100 chrIV:578781-580400 7.71e-01 100 chrIV:619718-620371 4.70e-08 9_[-2(2.82e-11)]_61 chrIV:645065-645362 3.92e-12 24_[-3(7.73e-15)]_46 chrIV:667717-668195 7.18e-01 100 chrIV:758454-759651 9.92e-01 100 chrIV:802464-802982 3.92e-06 49_[+1(2.54e-10)]_21 chrIV:835781-836237 1.75e-01 100 chrIV:884265-884576 5.03e-01 100 chrIV:946151-946595 5.57e-04 55_[-1(4.93e-07)]_15 chrIV:974271-974801 2.26e-01 100 chrIV:980744-981164 1.06e-04 61_[+1(1.72e-08)]_9 chrIV:992694-993374 9.99e-01 100 chrIV:1016961-1017494 7.93e-19 21_[+1(1.12e-10)]_13_[-3(1.64e-15)]_\ 6 chrIV:1075341-1075744 1.30e-09 15_[-3(6.27e-14)]_55 chrIV:1094912-1095667 4.36e-02 20_[+2(4.58e-05)]_50 chrIV:1150741-1151153 2.68e-02 6_[-2(8.12e-05)]_64 chrIV:1175592-1176054 5.01e-04 63_[+2(1.06e-07)]_7 chrIV:1201553-1201994 2.98e-09 34_[+2(8.85e-12)]_36 chrIV:1233685-1235056 2.39e-01 100 chrIV:1236538-1237983 8.91e-01 100 chrIV:1256908-1257324 8.28e-01 100 chrIV:1300557-1301306 7.65e-01 100 chrIV:1305118-1305814 4.31e-01 100 chrIV:1351847-1353426 6.52e-01 100 chrIV:1359442-1360806 2.97e-01 100 chrIV:1400901-1401967 9.26e-01 100 chrIV:1461378-1461830 3.03e-01 100 chrIX:23819-25226 9.04e-01 100 chrIX:98581-99351 5.84e-01 100 chrIX:99659-100131 8.90e-01 100 chrIX:174639-175728 9.85e-01 100 chrIX:183295-183702 9.21e-07 26_[-2(3.39e-09)]_44 chrIX:197332-197770 5.23e-01 100 chrIX:210521-211677 1.89e-01 100 chrIX:248573-248993 7.09e-01 100 chrIX:254260-254519 2.00e-01 100 chrIX:257391-257713 7.82e-01 100 chrIX:299992-300486 3.43e-07 30_[+1(4.75e-11)]_40 chrIX:315591-315754 8.91e-01 100 chrIX:315976-318191 5.14e-01 100 chrIX:324010-324373 3.73e-01 100 chrIX:325755-326120 3.68e-01 100 chrIX:335853-336637 6.39e-03 100 chrIX:370219-370821 6.80e-01 100 chrIX:391699-392000 6.34e-01 100 chrV:42160-42594 4.12e-01 100 chrV:52061-53188 3.12e-01 100 chrV:53544-53918 9.50e-01 100 chrV:61327-62169 9.64e-01 100 chrV:67175-68873 2.99e-01 100 chrV:85152-85434 3.76e-01 100 chrV:86395-87290 7.67e-01 100 chrV:99761-100325 9.56e-01 100 chrV:117682-118322 7.54e-02 100 chrV:130799-131372 7.43e-08 38_[+1(1.27e-11)]_32 chrV:135133-136124 3.14e-02 59_[-3(5.81e-05)]_11 chrV:138457-140893 3.73e-01 100 chrV:176888-177505 2.72e-06 2_[-1(8.46e-10)]_68 chrV:249796-250488 5.63e-01 100 chrV:288150-288883 8.13e-10 20_[-2(1.04e-13)]_50 chrV:305821-306920 9.31e-01 100 chrV:311741-312293 3.07e-04 47_[+1(3.89e-08)]_23 chrV:354696-355206 1.00e-13 39_[+3(3.57e-17)]_31 chrV:364067-364464 1.93e-01 100 chrV:396199-396566 6.39e-01 100 chrV:423085-423475 4.31e-01 100 chrV:431024-432017 8.53e-01 100 chrV:434418-435333 5.47e-01 100 chrV:435659-436008 7.18e-08 3_[-2(8.85e-12)]_67 chrV:438513-438900 3.25e-01 100 chrV:441804-442669 2.57e-01 100 chrV:443037-443374 2.78e-08 38_[+1(1.00e-12)]_32 chrV:469161-469652 4.92e-01 100 chrV:487103-487761 9.66e-01 100 chrV:492226-492553 3.66e-13 4_[+1(1.03e-08)]_13_[-2(2.82e-11)]_\ 23 chrV:550982-551586 1.91e-09 42_[+1(1.26e-13)]_28 chrVI:64225-65343 5.13e-01 100 chrVI:75233-75900 2.01e-01 100 chrVI:95481-95886 6.22e-01 100 chrVI:101158-101549 7.05e-01 100 chrVI:136146-137693 4.27e-01 100 chrVI:157902-158228 8.79e-01 100 chrVI:162017-162385 4.27e-01 100 chrVI:166747-167679 5.31e-01 100 chrVI:180638-181265 8.32e-07 64_[+1(4.75e-11)]_6 chrVI:190925-191783 9.79e-01 100 chrVI:210449-211103 4.73e-01 100 chrVI:221769-222162 3.11e-01 100 chrVI:226677-227136 4.56e-02 64_[-3(1.65e-05)]_6 chrVII:110280-110779 3.63e-01 100 chrVII:115341-115715 1.52e-10 17_[+2(1.15e-09)]_16_[+1(7.57e-07)]_\ 7 chrVII:122040-122406 5.03e-01 100 chrVII:148868-149576 5.99e-02 66_[-1(7.13e-05)]_4 chrVII:184662-185904 7.78e-01 100 chrVII:205315-205740 2.14e-04 52_[+2(1.62e-08)]_18 chrVII:254110-254699 8.65e-01 100 chrVII:277046-277355 7.02e-01 100 chrVII:287240-287658 1.75e-04 19_[-2(5.80e-08)]_51 chrVII:310496-311920 7.68e-01 100 chrVII:319239-320108 6.59e-01 100 chrVII:328409-328945 3.71e-06 5_[-1(4.45e-10)]_65 chrVII:364915-366583 9.12e-01 100 chrVII:405476-405992 7.16e-01 100 chrVII:411608-412573 6.54e-02 100 chrVII:422880-423310 4.22e-06 55_[+2(1.62e-08)]_15 chrVII:438617-438862 8.26e-01 100 chrVII:440538-441028 2.87e-05 36_[-2(2.10e-09)]_34 chrVII:481512-482761 6.90e-01 100 chrVII:531272-531873 3.64e-01 100 chrVII:533979-535171 8.05e-01 100 chrVII:541720-542136 1.23e-06 21_[-1(1.57e-09)]_49 chrVII:544421-544904 9.08e-01 100 chrVII:555173-555686 9.74e-01 100 chrVII:648778-649368 3.41e-01 100 chrVII:661545-661938 8.40e-05 64_[+2(1.17e-08)]_6 chrVII:700414-701234 6.93e-01 100 chrVII:706946-707174 8.13e-01 100 chrVII:726176-726756 5.24e-01 100 chrVII:730970-731374 8.57e-11 23_[+2(1.41e-09)]_13_[-1(7.87e-09)]_\ 4 chrVII:736201-736542 3.06e-14 25_[+2(1.19e-10)]_13_[-1(3.57e-10)]_\ 2 chrVII:736892-737080 5.20e-01 100 chrVII:738881-739497 2.18e-07 34_[-1(9.60e-12)]_36 chrVII:771487-772305 9.11e-02 16_[-2(9.91e-05)]_54 chrVII:774135-774584 5.17e-06 47_[+2(8.73e-08)]_23 chrVII:779380-779930 4.77e-15 17_[+3(1.06e-14)]_13_[-1(5.74e-08)]_\ 10 chrVII:787349-788698 1.51e-02 69_[+3(7.52e-05)]_1 chrVII:794074-794564 9.73e-01 100 chrVII:823354-823697 1.41e-05 58_[-1(6.57e-09)]_12 chrVII:824175-825043 2.21e-01 100 chrVII:828329-828978 3.47e-01 100 chrVII:845460-846276 8.07e-01 100 chrVII:857061-857644 2.31e-04 67_[+1(3.06e-08)]_3 chrVII:876180-876830 7.97e-01 100 chrVII:878608-879070 4.90e-03 6_[+2(2.47e-05)]_64 chrVII:914868-915992 7.19e-01 100 chrVII:921052-921755 1.43e-01 100 chrVII:930201-931669 2.51e-09 59_[+1(1.82e-13)]_11 chrVII:1004054-1004407 7.96e-05 42_[+2(1.17e-08)]_28 chrVIII:62611-63392 1.90e-01 100 chrVIII:74861-75881 3.23e-02 100 chrVIII:103750-104714 1.95e-01 100 chrVIII:115980-116401 2.62e-10 1_[-2(2.71e-14)]_69 chrVIII:125903-126285 7.76e-01 100 chrVIII:133954-135003 7.64e-01 100 chrVIII:145920-146457 4.18e-01 100 chrVIII:148979-149431 6.31e-01 100 chrVIII:174433-176008 2.59e-01 100 chrVIII:214148-214358 7.47e-01 100 chrVIII:237770-238138 2.24e-01 100 chrVIII:296652-297180 7.82e-01 100 chrVIII:358284-358759 1.15e-06 60_[-2(2.10e-09)]_10 chrVIII:374679-376577 6.79e-01 100 chrVIII:382696-383318 6.61e-01 100 chrVIII:388678-388980 8.60e-02 100 chrVIII:466813-467280 5.50e-09 [+2(1.17e-08)]_13_[-1(1.39e-07)]_27 chrVIII:475413-475904 8.65e-01 100 chrVIII:505849-506175 9.95e-01 100 chrVIII:554182-554722 2.99e-01 100 chrVIII:555085-555438 6.01e-01 100 chrX:59085-59384 3.00e-01 100 chrX:73436-74090 9.96e-01 100 chrX:75362-75691 9.50e-01 100 chrX:90055-90420 5.77e-01 100 chrX:115815-116272 9.83e-01 100 chrX:120502-121818 1.79e-01 100 chrX:157486-157833 5.61e-01 100 chrX:196375-196961 7.81e-01 100 chrX:197152-197432 2.24e-07 62_[+1(2.18e-11)]_8 chrX:204557-205036 4.29e-07 38_[-1(6.10e-11)]_32 chrX:233472-234155 8.75e-01 100 chrX:354000-354492 5.31e-02 100 chrX:355193-355748 1.22e-07 3_[-1(1.57e-09)]_9_[+3(6.15e-05)]_\ 28 chrX:366934-367164 2.86e-01 100 chrX:374203-374894 4.34e-08 42_[-2(1.19e-10)]_28 chrX:375115-375281 6.55e-02 100 chrX:377879-378561 4.75e-01 100 chrX:390141-391332 9.52e-01 100 chrX:396534-396939 1.03e-08 31_[+1(7.24e-13)]_39 chrX:414714-415240 2.98e-09 46_[+2(8.85e-12)]_24 chrX:415748-416237 2.13e-04 57_[-2(5.80e-08)]_13 chrX:422655-423346 2.06e-08 37_[-1(1.12e-10)]_33 chrX:423511-423674 4.82e-01 100 chrX:424291-424722 1.60e-05 20_[-2(6.41e-09)]_50 chrX:517662-518087 2.77e-06 23_[-2(7.53e-10)]_47 chrX:520455-521950 7.44e-01 100 chrX:523494-523753 7.59e-01 100 chrX:523926-524529 2.23e-01 100 chrX:531575-532246 1.29e-08 16_[-1(5.19e-13)]_54 chrX:538023-538724 5.35e-01 100 chrX:540883-541883 9.98e-01 100 chrX:542826-543265 1.38e-01 100 chrX:555973-556741 7.33e-01 100 chrX:617707-618229 1.48e-05 9_[+2(5.41e-08)]_61 chrX:651284-651572 8.30e-01 100 chrX:652028-652607 7.13e-01 100 chrX:703287-703670 3.48e-01 100 chrX:745070-745485 5.97e-01 100 chrXI:46716-47013 6.91e-01 100 chrXI:74388-74809 4.47e-01 100 chrXI:83991-84428 9.48e-04 57_[+2(1.06e-07)]_13 chrXI:107870-109044 7.68e-01 100 chrXI:140679-141471 1.00e-13 27_[-3(3.57e-17)]_43 chrXI:158236-158777 8.86e-01 100 chrXI:158970-159500 4.89e-01 100 chrXI:162195-162756 8.92e-06 53_[+1(1.91e-09)]_17 chrXI:202191-203272 3.12e-01 100 chrXI:219555-220086 3.05e-01 100 chrXI:302693-303188 2.77e-04 34_[+2(5.80e-08)]_36 chrXI:307954-308430 4.57e-01 100 chrXI:312245-314037 6.26e-01 100 chrXI:379711-379992 5.70e-01 100 chrXI:457521-459003 3.58e-02 100 chrXI:490769-491164 4.70e-08 59_[+2(2.82e-11)]_11 chrXI:513202-513606 6.43e-02 12_[-3(6.15e-05)]_58 chrXI:517792-518063 5.90e-01 100 chrXI:519373-521092 7.36e-01 100 chrXI:578759-579329 6.37e-05 44_[-1(1.12e-08)]_26 chrXI:618750-619269 9.36e-02 100 chrXII:48744-49222 9.65e-01 100 chrXII:64334-65887 6.20e-01 100 chrXII:87433-88432 3.55e-02 100 chrXII:92253-92880 1.63e-05 47_[-1(4.21e-08)]_23 chrXII:97175-97863 8.18e-01 100 chrXII:167789-168240 6.14e-07 23_[-2(4.85e-11)]_47 chrXII:214650-215059 7.27e-08 70_[+1(2.21e-12)] chrXII:241679-241990 8.03e-01 100 chrXII:366039-366499 4.52e-01 100 chrXII:374209-374678 1.23e-06 12_[-1(2.02e-10)]_58 chrXII:426918-428428 1.20e-03 40_[+3(9.05e-07)]_30 chrXII:448537-448842 3.06e-19 2_[+1(9.60e-12)]_13_[-3(7.73e-15)]_\ 25 chrXII:459622-460160 4.76e-01 100 chrXII:460506-460674 1.62e-01 100 chrXII:546515-547515 2.37e-02 46_[-3(2.05e-05)]_24 chrXII:592320-592968 6.95e-01 100 chrXII:605154-605640 1.81e-05 47_[-2(2.64e-07)]_23 chrXII:627797-629167 3.27e-06 43_[-1(3.77e-09)]_27 chrXII:656837-657217 2.08e-01 100 chrXII:673519-674215 4.86e-01 100 chrXII:713171-713603 9.30e-01 100 chrXII:731097-732301 8.72e-01 100 chrXII:734581-734925 3.86e-01 100 chrXII:780518-781868 9.99e-01 100 chrXII:783874-784510 9.70e-01 100 chrXII:793676-794012 1.02e-01 100 chrXII:796343-797373 9.63e-01 100 chrXII:818510-819121 5.36e-02 68_[+2(5.51e-05)]_2 chrXII:838002-839297 9.48e-01 100 chrXII:874892-875631 1.26e-01 100 chrXII:897727-898169 7.77e-01 100 chrXII:921802-923029 4.30e-01 100 chrXII:932098-932496 8.99e-01 100 chrXII:962861-963305 8.44e-01 100 chrXII:975730-976183 1.69e-05 68_[+1(1.42e-09)]_2 chrXII:1018118-1019567 8.15e-01 100 chrXII:1028219-1028544 9.66e-01 100 chrXII:1051963-1052203 2.74e-08 29_[+1(1.00e-12)]_41 chrXIII:91370-92079 5.63e-01 100 chrXIII:131621-132118 4.34e-08 40_[-2(1.19e-10)]_30 chrXIII:145739-146253 3.66e-01 100 chrXIII:168197-169028 9.99e-01 100 chrXIII:170955-171299 5.10e-01 100 chrXIII:195941-196297 1.82e-05 55_[+1(4.21e-08)]_15 chrXIII:225154-225704 9.45e-01 100 chrXIII:253387-253590 2.55e-01 100 chrXIII:259045-259375 1.74e-07 41_[-2(4.85e-11)]_29 chrXIII:290498-291087 1.31e-12 65_[+3(3.57e-17)]_5 chrXIII:296763-297894 9.25e-01 100 chrXIII:320979-321327 9.17e-07 35_[+1(9.97e-11)]_35 chrXIII:352085-352600 9.53e-02 100 chrXIII:362945-363287 3.14e-09 4_[+3(2.95e-06)]_13_[-1(2.27e-10)]_\ 23 chrXIII:368244-370347 3.35e-01 100 chrXIII:372180-372652 9.83e-07 70_[+1(8.46e-10)] chrXIII:378888-379636 2.02e-01 100 chrXIII:420334-420993 5.61e-01 100 chrXIII:463348-463878 4.29e-07 40_[-1(6.10e-11)]_30 chrXIII:480429-480811 1.64e-07 42_[+1(1.91e-11)]_28 chrXIII:504928-505216 1.14e-02 100 chrXIII:550064-551184 5.53e-02 100 chrXIII:551370-551789 9.56e-01 100 chrXIII:572274-573160 6.66e-01 100 chrXIII:586391-587093 9.99e-01 100 chrXIII:625937-626666 5.91e-01 100 chrXIII:731960-732644 4.03e-01 100 chrXIII:747760-748157 1.83e-07 18_[-2(1.19e-10)]_52 chrXIII:754480-755304 1.72e-02 69_[+2(8.30e-06)]_1 chrXIII:808116-808563 9.81e-01 100 chrXIII:837707-838225 1.36e-01 100 chrXIII:872445-873131 7.44e-01 100 chrXIII:887023-888715 1.23e-01 100 chrXIV:63139-63573 3.86e-01 100 chrXIV:96051-96497 7.23e-18 8_[+1(3.68e-11)]_13_[-3(1.06e-14)]_\ 19 chrXIV:102578-103126 7.95e-01 100 chrXIV:104617-105026 9.37e-11 41_[+2(2.71e-14)]_29 chrXIV:240631-242028 4.78e-01 100 chrXIV:374593-375065 9.52e-01 100 chrXIV:392315-392711 8.62e-01 100 chrXIV:442762-443221 9.76e-01 100 chrXIV:444483-444784 8.35e-01 100 chrXIV:493974-495025 5.31e-01 100 chrXIV:495218-495786 2.36e-01 100 chrXIV:525079-525285 1.25e-01 100 chrXIV:546549-547673 1.63e-05 48_[-1(4.21e-08)]_22 chrXIV:560169-560814 1.47e-01 100 chrXIV:568055-568663 5.15e-01 100 chrXIV:569675-570163 4.59e-07 32_[-2(3.39e-09)]_38 chrXIV:602099-602503 1.07e-07 29_[-3(1.34e-05)]_10_[+2(3.39e-09)]_\ 1 chrXIV:619744-620021 6.50e-01 100 chrXIV:631535-632139 8.68e-05 50_[+1(1.03e-08)]_20 chrXIV:632427-632854 2.48e-12 17_[+2(1.41e-09)]_13_[-1(1.80e-10)]_\ 10 chrXIV:725757-726337 8.57e-01 100 chrXIV:783645-784320 1.61e-02 10_[-3(4.14e-05)]_60 chrXV:79790-80108 9.40e-01 100 chrXV:92837-94775 4.19e-01 100 chrXV:110879-111193 3.35e-10 10_[-3(1.06e-14)]_60 chrXV:113594-113880 8.75e-01 100 chrXV:161204-161745 8.79e-01 100 chrXV:167979-168477 7.99e-01 100 chrXV:216289-216691 9.57e-01 100 chrXV:226338-226887 7.99e-10 40_[+1(2.17e-13)]_30 chrXV:228111-228530 1.11e-05 69_[+2(1.41e-09)]_1 chrXV:253830-254087 1.12e-01 100 chrXV:274471-275000 1.75e-05 66_[-1(4.14e-09)]_4 chrXV:281962-282350 7.03e-01 100 chrXV:287119-288368 9.92e-01 100 chrXV:300891-301663 8.07e-01 100 chrXV:340148-340592 4.70e-08 13_[-2(2.82e-11)]_57 chrXV:353913-354328 1.90e-10 5_[-2(2.71e-14)]_65 chrXV:438390-439462 8.16e-01 100 chrXV:444673-446122 8.61e-01 100 chrXV:464285-466089 1.96e-01 100 chrXV:487467-487862 3.30e-01 100 chrXV:504882-505478 9.98e-01 100 chrXV:571711-572124 8.99e-01 100 chrXV:594313-594674 2.68e-01 100 chrXV:663000-664092 5.86e-01 100 chrXV:678619-679091 9.10e-01 100 chrXV:710128-710633 2.90e-01 100 chrXV:779724-780751 6.28e-01 100 chrXV:853696-854788 2.12e-07 29_[-2(4.87e-10)]_41 chrXV:866329-867138 2.70e-01 100 chrXV:877282-878007 1.82e-01 100 chrXV:925162-925411 5.40e-01 100 chrXV:968175-968661 4.12e-01 100 chrXV:976286-976689 7.38e-09 34_[-1(3.68e-11)]_36 chrXV:978852-979064 7.55e-01 100 chrXV:979866-981315 3.19e-01 100 chrXV:1005154-1006613 4.07e-01 100 chrXV:1027962-1029097 1.79e-01 100 chrXVI:55906-56416 7.65e-05 49_[+1(3.06e-08)]_21 chrXVI:76393-76744 3.68e-01 100 chrXVI:188696-188897 3.03e-01 100 chrXVI:210048-210589 6.19e-01 100 chrXVI:338450-339366 2.77e-06 24_[-2(7.53e-10)]_46 chrXVI:339855-340216 8.37e-01 100 chrXVI:378694-378974 6.47e-01 100 chrXVI:406218-406534 2.09e-01 100 chrXVI:432600-434083 4.17e-01 100 chrXVI:435519-436179 2.73e-01 100 chrXVI:519950-520519 3.53e-01 100 chrXVI:559697-560278 5.82e-01 100 chrXVI:572041-572546 6.69e-01 100 chrXVI:581850-582183 8.85e-01 100 chrXVI:621984-622876 9.94e-01 100 chrXVI:627244-627517 8.01e-01 100 chrXVI:689380-689836 7.73e-16 14_[+2(1.04e-13)]_22_[-1(1.91e-09)]_\ 4 chrXVI:692854-694850 1.15e-01 100 chrXVI:699783-700632 4.35e-01 100 chrXVI:731926-732288 1.85e-01 100 chrXVI:744094-744570 3.69e-10 8_[+2(1.17e-08)]_13_[-1(6.57e-09)]_\ 19 chrXVI:745904-746715 4.13e-01 100 chrXVI:768863-769458 8.89e-01 100 chrXVI:775643-776098 1.76e-01 100 chrXVI:794491-794781 9.63e-01 100 chrXVI:810586-811498 5.29e-01 100 chrXVI:819330-819910 2.82e-08 10_[-1(3.00e-12)]_60 chrXVI:856726-857118 4.31e-06 37_[+2(8.73e-08)]_33 chrXVI:860132-860850 5.63e-01 100 chrXVI:879599-880581 3.14e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************