******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MSS11/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:332281-333014 1.0000 100 chrVIII:296764-297287 1.0000 100 chrXV:159182-160738 1.0000 100 chrVII:310463-312527 1.0000 100 chrXI:313201-314043 1.0000 100 chrI:141561-143654 1.0000 100 chrIV:1344615-1346121 1.0000 100 chrXVI:822782-824242 1.0000 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1.0000 100 chrXIV:725923-726338 1.0000 100 chrIV:411058-411701 1.0000 100 chrIV:1301538-1302531 1.0000 100 chrXVI:39241-40640 1.0000 100 chrV:51772-53279 1.0000 100 chrV:85057-86919 1.0000 100 chrX:73353-73453 1.0000 100 chrXIII:267669-268339 1.0000 100 chrVIII:16708-18337 1.0000 100 chrXV:109381-111279 1.0000 100 chrII:256199-257840 1.0000 100 chrIII:82379-82697 1.0000 100 chrXII:783925-784746 1.0000 100 chrXII:198468-199785 1.0000 100 chrXIII:258882-259380 1.0000 100 chrX:662759-662859 1.0000 100 chrIX:23466-25274 1.0000 100 chrXI:302705-303223 1.0000 100 chrIII:15336-16843 1.0000 100 chrV:266194-268137 1.0000 100 chrX:139145-139245 1.0000 100 chrIX:391800-391997 1.0000 100 chrVIII:174408-175753 1.0000 100 chrV:434388-434978 1.0000 100 chrX:531569-531669 1.0000 100 chrX:390856-390956 1.0000 100 chrXII:713145-713607 1.0000 100 chrXVI:591096-591576 1.0000 100 chrXII:855762-857564 1.0000 100 chrXV:300912-301773 1.0000 100 chrII:59584-61300 1.0000 100 chrIV:568691-569347 1.0000 100 chrIV:340197-341659 1.0000 100 chrXII:712272-712724 1.0000 100 chrVIII:554122-554734 1.0000 100 chrXI:364452-365249 1.0000 100 chrXIV:102582-103136 1.0000 100 chrVIII:145972-146464 1.0000 100 chrXV:384602-385083 1.0000 100 chrXV:80393-81524 1.0000 100 chrV:77397-79884 1.0000 100 chrVII:384321-385008 1.0000 100 chrIV:599506-600432 1.0000 100 chrXVI:810580-811406 1.0000 100 chrVI:190946-191778 1.0000 100 chrII:162964-163950 1.0000 100 chrXIV:330513-332551 1.0000 100 chrXV:571753-572148 1.0000 100 chrXVI:731620-732373 1.0000 100 chrVII:876167-878144 1.0000 100 chrX:355181-355281 1.0000 100 chrVII:878484-879042 1.0000 100 chrXVI:828793-829459 1.0000 100 chrII:88902-90244 1.0000 100 chrVII:370667-371567 1.0000 100 chrVII:766067-766781 1.0000 100 chrX:650781-650881 1.0000 100 chrIV:1150705-1151154 1.0000 100 chrIX:254184-254589 1.0000 100 chrII:392524-398093 1.0000 100 chrXI:490739-491215 1.0000 100 chrIX:183290-183705 1.0000 100 chrIV:117144-117918 1.0000 100 chrXII:932050-932532 1.0000 100 chrXII:592316-592808 1.0000 100 chrIX:257310-258254 1.0000 100 chrXIII:362945-363342 1.0000 100 chrIV:1354293-1356009 1.0000 100 chrXVI:502430-503318 1.0000 100 chrXV:881787-882436 1.0000 100 chrVIII:401076-401262 1.0000 100 chrXVI:519883-520564 1.0000 100 chrIV:1489033-1490542 1.0000 100 chrIV:1300439-1301356 1.0000 100 chrXII:447797-448849 1.0000 100 chrII:372811-375790 1.0000 100 chrXV:520551-520953 1.0000 100 chrXVI:622346-622848 1.0000 100 chrXII:83995-84373 1.0000 100 chrXI:46712-46993 1.0000 100 chrVI:226371-227311 1.0000 100 chrXIII:837702-838238 1.0000 100 chrIV:1461469-1461843 1.0000 100 chrXIII:195930-196302 1.0000 100 chrVII:345874-346702 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MSS11/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MSS11/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MSS11/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.296 C 0.204 G 0.204 T 0.296 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MSS11/background): A 0.304 C 0.196 G 0.196 T 0.304 ******************************************************************************** ******************************************************************************** MOTIF RGRTCMBSGGTTCGATYCCSV MEME-1 width = 21 sites = 88 llr = 1487 E-value = 8.4e-283 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGRTCMBSGGTTCGATYCCSV MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6242:3:12::::2a1::::2 pos.-specific C 11:17543::::a::259764 probability G 476::2457a:::8:1:::44 matrix T :::73:21::aa:::55121: bits 2.3 * * 2.1 * * * 1.9 * * * 1.6 **** * * Relative 1.4 ****** * Entropy 1.2 * * ****** *** (24.4 bits) 0.9 ** * ******* **** 0.7 *** * ******** ***** 0.5 *************** ***** 0.2 ********************* 0.0 --------------------- Multilevel AGGTCCGGGGTTCGATCCCCG consensus G AATACCA A CT TGC sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCMBSGGTTCGATYCCSV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:631678-632130 - 1 5.24e-12 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCG chrIII:123352-123823 - 49 5.24e-12 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCG GCTCGCCCCA chrIX:183290-183705 - 2 9.80e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC T chrXVI:880075-880577 - 29 9.80e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXII:1051908-1052209 - 72 9.80e-11 TAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrII:197266-197859 + 26 9.80e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrV:443040-443378 - 52 9.80e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXIV:569648-570159 - 23 9.80e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXIV:602107-602566 + 70 9.80e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrVIII:475507-475900 - 62 1.14e-10 CACACGGCAA AGGTCCCGAGTTCGATCCTCG GTTGGAACAT chrIV:1075296-1075752 - 7 1.14e-10 CACACGGCAA AGGTCCCGAGTTCGATCCTCG GTTGGA chrX:531569-531669 + 1 1.34e-10 . GGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrIV:83439-83811 + 14 1.34e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAA chrX:396569-396669 - 27 1.34e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAT chrIV:992687-993127 + 16 1.34e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAC chrIV:1256830-1257277 - 14 1.85e-10 TCCCAAGCAT GGGGCCCGGGTTCGATTCCCG GCTTCCGCAT chrXII:214679-215063 - 71 1.85e-10 GCAAGGAAG AGGTCATCGGTTCGATTCCGG TTGCGTCCAT chrXVI:581830-582355 + 63 2.20e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrV:435577-435997 - 24 2.20e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrVII:185531-185894 - 61 2.20e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrIX:299998-300501 - 38 2.20e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrX:414804-414904 + 46 2.20e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrX:115755-115855 - 10 3.93e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAG chrIV:1016971-1017496 - 33 3.93e-10 TCTCACCGTG GAGACCGGGGTTCGACTCCCC GCTTCGGAGT chrVII:401404-401612 - 78 3.93e-10 TG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrIX:370222-370709 + 44 3.93e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrXI:140646-141458 - 25 3.93e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:176898-177477 + 4 3.93e-10 GTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrXIII:290591-291131 + 32 3.93e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrIV:410158-410753 + 17 5.23e-10 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAA chrVII:774136-774684 + 32 5.23e-10 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAA chrXIII:320967-321326 - 60 5.23e-10 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAT chrXVI:856712-857183 + 48 5.23e-10 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAT chrXIV:96045-96520 - 18 7.97e-10 TTCCAAGGTG GGGACACGGGTTCGATTCTCG TACCGCTCAA chrXI:578704-579384 + 37 1.76e-09 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXVI:769006-769501 - 13 1.76e-09 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrVII:115336-115748 + 62 1.76e-09 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrIV:488401-489165 - 73 2.53e-09 ACGGCGA AGATCCCGAGTTCGAACCTCG GTTGGATCAG chrII:326571-327095 - 18 2.53e-09 TACACGGCGA AGATCCCGAGTTCGAACCTCG GTTGGATCAA chrV:438480-438966 + 71 3.22e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCA chrVII:412069-412576 - 31 3.22e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAA chrVII:823343-823727 + 41 3.22e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXIII:420304-420869 - 61 3.22e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXIII:372196-372656 - 78 3.22e-09 GA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXIII:195930-196302 - 11 3.62e-09 AGCATGCGAG AGGCCCTGGGTTCAATTCCCA GCTCGCCCCT chrXV:464272-464823 + 25 3.62e-09 AGCATGCGAG AGGCCCTGGGTTCAATTCCCA GCTCGCCCCT chrX:374210-374310 - 31 4.55e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrVII:828423-828984 - 79 4.55e-09 A AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrXIII:131641-132104 - 12 4.55e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrXI:162184-162761 - 74 4.55e-09 ATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGT chrII:405674-406250 + 8 4.55e-09 AATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrXIII:747706-748146 - 25 4.55e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGT chrII:350623-351068 + 74 8.85e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAAGA chrVIII:133983-134765 + 39 8.85e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAGGACCTT chrV:130840-131366 - 38 8.85e-09 TTTGATCCGA ACAACCCCGGTTCGAATCCGG GTAAGACCTA chrIV:568691-569347 + 37 3.50e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCACGGAGA chrX:204543-204643 + 54 3.50e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXI:513115-513612 - 28 3.50e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXII:426911-427453 + 42 3.50e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrIX:336094-336623 - 50 3.50e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXIII:808043-808539 - 14 3.83e-08 TCTGATCCGA ACAACCCCAGTTCGAATCCGG GTGGGACCTT chrXVI:622346-622848 - 2 4.99e-08 AGTTATCTGG AGGTCCTGTGTTCGATCCACA G chrII:36232-36641 + 73 4.99e-08 AGTCATCTGG AGGTCCTGTGTTCGATCCACA GAATTCG chrVII:700217-701254 + 42 4.99e-08 GATCTCTTCG GAGGCGCGGGTTCAAACCCCG CGGGTATCAA chrIV:1095123-1095659 - 38 4.99e-08 AGATATCTGG AGGTCCTGTGTTCGATCCACA GAGTTCGCAT chrIV:884262-884638 + 64 7.01e-08 AGCAACGCGA CCGTCGTGGGTTCAAACCCCA CCTCGAGCAC chrVII:730955-731418 + 45 7.62e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXII:975745-976194 - 73 7.62e-08 AATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXIV:632415-632838 + 67 7.62e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrIII:127587-127897 + 68 7.62e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrVII:878484-879042 - 6 8.27e-08 TGCAATCGAA GGGTTGCAGGTTCAATTCCTG TCCGT chrXI:302705-303223 + 80 8.27e-08 TGCAATCGAA GGGTTGCAGGTTCAATTCCTG chrX:415731-415831 - 6 8.27e-08 TGCAATCGAA GGGTTGCAGGTTCAATTCCTG TCCGT chrXIII:379026-379616 - 41 8.27e-08 TGCAATCGAA GGGTTGCAGGTTCAATTCCTG TCCGTTTCAA chrVIII:466807-467274 + 42 8.27e-08 TGTAATGCAA AGGTCGCTAGTTCAATTCTGG CAGGTGGCAT chrXIII:572674-573151 - 30 9.72e-08 CATAATCTGA AGGTCGAGAGTTCGAACCTCC CCTGGAGCAC chrXIII:837702-838238 + 67 1.33e-07 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrIV:946141-946618 + 42 1.33e-07 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrIV:619719-620264 - 37 1.67e-07 ACGAACCAGA AGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrXIV:725923-726338 + 58 2.23e-07 AAATACTGAA GGATGCGAGGTTCGAACTCGC GCGGACAACC chrII:9375-9920 - 45 2.23e-07 AAATACTGAA GGATGCGAGGTTCGAACTCGC GCGGACAACC chrIV:519653-519951 - 50 2.23e-07 AGTTATTGAA GGATGCGAGGTTCGAACTCGC GCGGACAACC chrX:424253-424353 + 5 2.23e-07 TGAA GGATGCGAGGTTCGAACTCGC GCGGACAACC chrXVI:744084-744559 + 55 3.15e-07 TGTAATGCAA AGGTCGTTAGTTCAATTCTGA CAGGTGGCAA chrXVI:435648-436218 - 19 3.15e-07 GCAAATCTGT TGGTCCTTAGTTCGATCCTGA GTGCGAGCTT chrII:642844-643248 - 20 3.15e-07 GCAAATCTGT TGGTCCTTAGTTCGATCCTGA GTGCGAGCTT chrXIII:362945-363342 + 13 1.01e-06 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG GAGATGGCAT chrXI:517317-518313 - 64 1.54e-06 TACTATCTTT GTGTTGGCTGTTCAATCTCCG GAATTTGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCMBSGGTTCGATYCCSV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631678-632130 5.2e-12 [-1]_79 chrIII:123352-123823 5.2e-12 48_[-1]_31 chrIX:183290-183705 9.8e-11 1_[-1]_78 chrXVI:880075-880577 9.8e-11 28_[-1]_51 chrXII:1051908-1052209 9.8e-11 71_[-1]_8 chrII:197266-197859 9.8e-11 25_[+1]_54 chrV:443040-443378 9.8e-11 51_[-1]_28 chrXIV:569648-570159 9.8e-11 22_[-1]_57 chrXIV:602107-602566 9.8e-11 69_[+1]_10 chrVIII:475507-475900 1.1e-10 61_[-1]_18 chrIV:1075296-1075752 1.1e-10 6_[-1]_73 chrX:531569-531669 1.3e-10 [+1]_79 chrIV:83439-83811 1.3e-10 13_[+1]_66 chrX:396569-396669 1.3e-10 26_[-1]_53 chrIV:992687-993127 1.3e-10 15_[+1]_64 chrIV:1256830-1257277 1.9e-10 13_[-1]_66 chrXII:214679-215063 1.9e-10 70_[-1]_9 chrXVI:581830-582355 2.2e-10 62_[+1]_17 chrV:435577-435997 2.2e-10 23_[-1]_56 chrVII:185531-185894 2.2e-10 60_[-1]_19 chrIX:299998-300501 2.2e-10 37_[-1]_42 chrX:414804-414904 2.2e-10 45_[+1]_34 chrX:115755-115855 3.9e-10 9_[-1]_70 chrIV:1016971-1017496 3.9e-10 32_[-1]_47 chrVII:401404-401612 3.9e-10 77_[-1]_2 chrIX:370222-370709 3.9e-10 43_[+1]_36 chrXI:140646-141458 3.9e-10 24_[-1]_55 chrV:176898-177477 3.9e-10 3_[+1]_76 chrXIII:290591-291131 3.9e-10 31_[+1]_48 chrIV:410158-410753 5.2e-10 16_[+1]_63 chrVII:774136-774684 5.2e-10 31_[+1]_48 chrXIII:320967-321326 5.2e-10 59_[-1]_20 chrXVI:856712-857183 5.2e-10 47_[+1]_32 chrXIV:96045-96520 8e-10 17_[-1]_62 chrXI:578704-579384 1.8e-09 36_[+1]_43 chrXVI:769006-769501 1.8e-09 12_[-1]_67 chrVII:115336-115748 1.8e-09 61_[+1]_18 chrIV:488401-489165 2.5e-09 72_[-1]_7 chrII:326571-327095 2.5e-09 17_[-1]_62 chrV:438480-438966 3.2e-09 70_[+1]_9 chrVII:412069-412576 3.2e-09 30_[-1]_49 chrVII:823343-823727 3.2e-09 40_[+1]_39 chrXIII:420304-420869 3.2e-09 60_[-1]_19 chrXIII:372196-372656 3.2e-09 77_[-1]_2 chrXIII:195930-196302 3.6e-09 10_[-1]_69 chrXV:464272-464823 3.6e-09 24_[+1]_55 chrX:374210-374310 4.6e-09 30_[-1]_49 chrVII:828423-828984 4.6e-09 78_[-1]_1 chrXIII:131641-132104 4.6e-09 11_[-1]_68 chrXI:162184-162761 4.6e-09 73_[-1]_6 chrII:405674-406250 4.6e-09 7_[+1]_72 chrXIII:747706-748146 4.6e-09 24_[-1]_55 chrII:350623-351068 8.8e-09 73_[+1]_6 chrVIII:133983-134765 8.8e-09 38_[+1]_41 chrV:130840-131366 8.8e-09 37_[-1]_42 chrIV:568691-569347 3.5e-08 36_[+1]_43 chrX:204543-204643 3.5e-08 53_[+1]_26 chrXI:513115-513612 3.5e-08 27_[-1]_52 chrXII:426911-427453 3.5e-08 41_[+1]_38 chrIX:336094-336623 3.5e-08 49_[-1]_30 chrXIII:808043-808539 3.8e-08 13_[-1]_66 chrXVI:622346-622848 5e-08 1_[-1]_78 chrII:36232-36641 5e-08 72_[+1]_7 chrVII:700217-701254 5e-08 41_[+1]_38 chrIV:1095123-1095659 5e-08 37_[-1]_42 chrIV:884262-884638 7e-08 63_[+1]_16 chrVII:730955-731418 7.6e-08 44_[+1]_35 chrXII:975745-976194 7.6e-08 72_[-1]_7 chrXIV:632415-632838 7.6e-08 66_[+1]_13 chrIII:127587-127897 7.6e-08 67_[+1]_12 chrVII:878484-879042 8.3e-08 5_[-1]_74 chrXI:302705-303223 8.3e-08 79_[+1] chrX:415731-415831 8.3e-08 5_[-1]_74 chrXIII:379026-379616 8.3e-08 40_[-1]_39 chrVIII:466807-467274 8.3e-08 41_[+1]_38 chrXIII:572674-573151 9.7e-08 29_[-1]_50 chrXIII:837702-838238 1.3e-07 66_[+1]_13 chrIV:946141-946618 1.3e-07 41_[+1]_38 chrIV:619719-620264 1.7e-07 36_[-1]_43 chrXIV:725923-726338 2.2e-07 57_[+1]_22 chrII:9375-9920 2.2e-07 44_[-1]_35 chrIV:519653-519951 2.2e-07 49_[-1]_30 chrX:424253-424353 2.2e-07 4_[+1]_75 chrXVI:744084-744559 3.2e-07 54_[+1]_25 chrXVI:435648-436218 3.2e-07 18_[-1]_61 chrII:642844-643248 3.2e-07 19_[-1]_60 chrXIII:362945-363342 1e-06 12_[+1]_67 chrXI:517317-518313 1.5e-06 63_[-1]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCMBSGGTTCGATYCCSV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGRTCMBSGGTTCGATYCCSV width=21 seqs=88 chrXIV:631678-632130 ( 1) AGGTCCCGGGTTCGAGTCCCG 1 chrIII:123352-123823 ( 49) AGGTCCCGGGTTCGAGTCCCG 1 chrIX:183290-183705 ( 2) GGATCAGCGGTTCGATCCCGC 1 chrXVI:880075-880577 ( 29) GGATCAGCGGTTCGATCCCGC 1 chrXII:1051908-1052209 ( 72) GGATCAGCGGTTCGATCCCGC 1 chrII:197266-197859 ( 26) GGATCAGCGGTTCGATCCCGC 1 chrV:443040-443378 ( 52) GGATCAGCGGTTCGATCCCGC 1 chrXIV:569648-570159 ( 23) GGATCAGCGGTTCGATCCCGC 1 chrXIV:602107-602566 ( 70) GGATCAGCGGTTCGATCCCGC 1 chrVIII:475507-475900 ( 62) AGGTCCCGAGTTCGATCCTCG 1 chrIV:1075296-1075752 ( 7) AGGTCCCGAGTTCGATCCTCG 1 chrX:531569-531669 ( 1) GGGCCCCCGGTTCGATTCCGG 1 chrIV:83439-83811 ( 14) GGGCCCCCGGTTCGATTCCGG 1 chrX:396569-396669 ( 27) GGGCCCCCGGTTCGATTCCGG 1 chrIV:992687-993127 ( 16) GGGCCCCCGGTTCGATTCCGG 1 chrIV:1256830-1257277 ( 14) GGGGCCCGGGTTCGATTCCCG 1 chrXII:214679-215063 ( 71) AGGTCATCGGTTCGATTCCGG 1 chrXVI:581830-582355 ( 63) AGGTTAGGGGTTCGAGCCCCC 1 chrV:435577-435997 ( 24) AGGTTAGGGGTTCGAGCCCCC 1 chrVII:185531-185894 ( 61) AGGTTAGGGGTTCGAGCCCCC 1 chrIX:299998-300501 ( 38) AGGTTAGGGGTTCGAGCCCCC 1 chrX:414804-414904 ( 46) AGGTTAGGGGTTCGAGCCCCC 1 chrX:115755-115855 ( 10) GAGACCGGGGTTCGACTCCCC 1 chrIV:1016971-1017496 ( 33) GAGACCGGGGTTCGACTCCCC 1 chrVII:401404-401612 ( 78) GAGACCGGGGTTCGACTCCCC 1 chrIX:370222-370709 ( 44) GAGACCGGGGTTCGACTCCCC 1 chrXI:140646-141458 ( 25) GAGACCGGGGTTCGACTCCCC 1 chrV:176898-177477 ( 4) GAGACCGGGGTTCGACTCCCC 1 chrXIII:290591-291131 ( 32) GAGACCGGGGTTCGACTCCCC 1 chrIV:410158-410753 ( 17) AGGTCTCCGGTTCGATTCCGG 1 chrVII:774136-774684 ( 32) AGGTCTCCGGTTCGATTCCGG 1 chrXIII:320967-321326 ( 60) AGGTCTCCGGTTCGATTCCGG 1 chrXVI:856712-857183 ( 48) AGGTCTCCGGTTCGATTCCGG 1 chrXIV:96045-96520 ( 18) GGGACACGGGTTCGATTCTCG 1 chrXI:578704-579384 ( 37) ATGTCAGGGGTTCGAGCCCCC 1 chrXVI:769006-769501 ( 13) ATGTCAGGGGTTCGAGCCCCC 1 chrVII:115336-115748 ( 62) ATGTCAGGGGTTCGAGCCCCC 1 chrIV:488401-489165 ( 73) AGATCCCGAGTTCGAACCTCG 1 chrII:326571-327095 ( 18) AGATCCCGAGTTCGAACCTCG 1 chrV:438480-438966 ( 71) ACGTCCCCAGTTCGATCCTGG 1 chrVII:412069-412576 ( 31) ACGTCCCCAGTTCGATCCTGG 1 chrVII:823343-823727 ( 41) ACGTCCCCAGTTCGATCCTGG 1 chrXIII:420304-420869 ( 61) ACGTCCCCAGTTCGATCCTGG 1 chrXIII:372196-372656 ( 78) ACGTCCCCAGTTCGATCCTGG 1 chrXIII:195930-196302 ( 11) AGGCCCTGGGTTCAATTCCCA 1 chrXV:464272-464823 ( 25) AGGCCCTGGGTTCAATTCCCA 1 chrX:374210-374310 ( 31) AGATTATGGGTTCGACCCCCA 1 chrVII:828423-828984 ( 79) AGATTATGGGTTCGACCCCCA 1 chrXIII:131641-132104 ( 12) AGATTATGGGTTCGACCCCCA 1 chrXI:162184-162761 ( 74) AGATTATGGGTTCGACCCCCA 1 chrII:405674-406250 ( 8) AGATTATGGGTTCGACCCCCA 1 chrXIII:747706-748146 ( 25) AGATTATGGGTTCGACCCCCA 1 chrII:350623-351068 ( 74) ACAACCCCGGTTCGAATCCGG 1 chrVIII:133983-134765 ( 39) ACAACCCCGGTTCGAATCCGG 1 chrV:130840-131366 ( 38) ACAACCCCGGTTCGAATCCGG 1 chrIV:568691-569347 ( 37) CAGATCGGGGTTCAATTCCCC 1 chrX:204543-204643 ( 54) CAGATCGGGGTTCAATTCCCC 1 chrXI:513115-513612 ( 28) CAGATCGGGGTTCAATTCCCC 1 chrXII:426911-427453 ( 42) CAGATCGGGGTTCAATTCCCC 1 chrIX:336094-336623 ( 50) CAGATCGGGGTTCAATTCCCC 1 chrXIII:808043-808539 ( 14) ACAACCCCAGTTCGAATCCGG 1 chrXVI:622346-622848 ( 2) AGGTCCTGTGTTCGATCCACA 1 chrII:36232-36641 ( 73) AGGTCCTGTGTTCGATCCACA 1 chrVII:700217-701254 ( 42) GAGGCGCGGGTTCAAACCCCG 1 chrIV:1095123-1095659 ( 38) AGGTCCTGTGTTCGATCCACA 1 chrIV:884262-884638 ( 64) CCGTCGTGGGTTCAAACCCCA 1 chrVII:730955-731418 ( 45) AGATCGTGAGTTCAACCCTCA 1 chrXII:975745-976194 ( 73) AGATCGTGAGTTCAACCCTCA 1 chrXIV:632415-632838 ( 67) AGATCGTGAGTTCAACCCTCA 1 chrIII:127587-127897 ( 68) AGATCGTGAGTTCAACCCTCA 1 chrVII:878484-879042 ( 6) GGGTTGCAGGTTCAATTCCTG 1 chrXI:302705-303223 ( 80) GGGTTGCAGGTTCAATTCCTG 1 chrX:415731-415831 ( 6) GGGTTGCAGGTTCAATTCCTG 1 chrXIII:379026-379616 ( 41) GGGTTGCAGGTTCAATTCCTG 1 chrVIII:466807-467274 ( 42) AGGTCGCTAGTTCAATTCTGG 1 chrXIII:572674-573151 ( 30) AGGTCGAGAGTTCGAACCTCC 1 chrXIII:837702-838238 ( 67) AGATCGGGCGTTCGACTCGCC 1 chrIV:946141-946618 ( 42) AGATCGGGCGTTCGACTCGCC 1 chrIV:619719-620264 ( 37) AGATTCCAGGTTCAAGTCCTG 1 chrXIV:725923-726338 ( 58) GGATGCGAGGTTCGAACTCGC 1 chrII:9375-9920 ( 45) GGATGCGAGGTTCGAACTCGC 1 chrIV:519653-519951 ( 50) GGATGCGAGGTTCGAACTCGC 1 chrX:424253-424353 ( 5) GGATGCGAGGTTCGAACTCGC 1 chrXVI:744084-744559 ( 55) AGGTCGTTAGTTCAATTCTGA 1 chrXVI:435648-436218 ( 19) TGGTCCTTAGTTCGATCCTGA 1 chrII:642844-643248 ( 20) TGGTCCTTAGTTCGATCCTGA 1 chrXIII:362945-363342 ( 13) GAAACCCTGGTTCGATTCTAG 1 chrXI:517317-518313 ( 64) GTGTTGGCTGTTCAATCTCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCMBSGGTTCGATYCCSV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 11.1716 E= 8.4e-283 87 -153 84 -374 -93 -79 180 -274 21 -1310 172 -1310 -57 -153 -311 121 -1310 184 -211 -28 -22 138 -11 -274 -474 93 98 -42 -157 59 147 -242 -49 -311 187 -274 -1310 -1310 235 -1310 -1310 -1310 -1310 172 -1310 -1310 -1310 172 -1310 235 -1310 -1310 -35 -1310 196 -1310 172 -1310 -1310 -1310 -104 14 -65 75 -1310 144 -1310 62 -1310 226 -1310 -242 -315 187 -311 -42 -474 150 93 -242 -49 98 102 -1310 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCMBSGGTTCGATYCCSV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 88 E= 8.4e-283 0.556818 0.068182 0.352273 0.022727 0.159091 0.113636 0.681818 0.045455 0.352273 0.000000 0.647727 0.000000 0.204545 0.068182 0.022727 0.704545 0.000000 0.704545 0.045455 0.250000 0.261364 0.511364 0.181818 0.045455 0.011364 0.375000 0.386364 0.227273 0.102273 0.295455 0.545455 0.056818 0.215909 0.022727 0.715909 0.045455 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.238636 0.000000 0.761364 0.000000 1.000000 0.000000 0.000000 0.000000 0.147727 0.215909 0.125000 0.511364 0.000000 0.534091 0.000000 0.465909 0.000000 0.943182 0.000000 0.056818 0.034091 0.715909 0.022727 0.227273 0.011364 0.556818 0.375000 0.056818 0.215909 0.386364 0.397727 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCMBSGGTTCGATYCCSV MEME-1 regular expression -------------------------------------------------------------------------------- [AG]G[GA][TA][CT][CA][GCT][GC][GA]GTTC[GA]A[TC][CT]C[CT][CG][GCA] -------------------------------------------------------------------------------- Time 353.17 secs. ******************************************************************************** ******************************************************************************** MOTIF SCCVRDKKGKTARVGCGYMDGACTNHWAAT MEME-2 width = 30 sites = 51 llr = 915 E-value = 2.0e-139 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCCVRDKKGKTARVGCGYMDGACTNHWAAT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1113441:::1a53::1134:7::234881 pos.-specific C 37531::1:11:12:a:3521:9:23:::2 probability G 63233335851:55a:811283::3112:1 matrix T ::212364247:::::15221:1a335:26 bits 2.3 ** 2.1 ** 1.9 ** 1.6 * * ** ** Relative 1.4 * * *** * ** Entropy 1.2 ** * * *** * ** * (25.9 bits) 0.9 ** * * *** * ** ** 0.7 ** ****** *** **** ** 0.5 *** *********** **** **** 0.2 **** ************** **** **** 0.0 ------------------------------ Multilevel GCCCAATGGGTAAGGCGTCAGACTGATAAT consensus CG AGTGT T GA CAT G TTA C sequence G G C G AC C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCVRDKKGKTARVGCGYMDGACTNHWAAT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXV:353894-354317 - 20 1.20e-11 TGCTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAAT GTGGAGATCA chrXVI:581830-582355 + 29 1.41e-11 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAAT CATAAGGTTA chrV:435577-435997 - 49 1.41e-11 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAAT CATAAGGTTA chrIX:299998-300501 - 63 1.41e-11 CCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAAT CATAAGGTTA chrX:414804-414904 + 12 1.41e-11 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAAT CATAAGGTTA chrVII:122058-122481 + 59 1.41e-11 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAAT CATAAGGTTA chrVII:730955-731418 + 11 9.52e-11 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAAT CGCAAGATCG chrXI:74403-74836 + 65 9.52e-11 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAAT CGCAAG chrXIV:632415-632838 + 33 9.52e-11 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAAT CGCAAGATCG chrIII:127587-127897 + 34 9.52e-11 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAAT CGCAAGATCG chrXI:490739-491215 + 50 1.09e-10 GTTCCTCGTG GCCCAATGGTCACGGCGTCTGGCTACGAAC CAGAAGATTC chrXV:340149-340586 - 16 1.09e-10 GTTCCTCGTG GCCCAATGGTCACGGCGTCTGGCTACGAAC CAGAAGATTC chrXII:374066-374669 + 47 1.09e-10 GTTCCTCGTG GCCCAATGGTCACGGCGTCTGGCTACGAAC CAGAAGATTC chrIV:619719-620264 - 62 1.09e-10 TTCCTCGTG GCCCAATGGTCACGGCGTCTGGCTACGAAC CAGAAGATTC chrX:374210-374310 - 56 2.10e-10 TAGCTCGCGT GGCGTAATGGCAACGCGTCTGACTTCTAAT CAGAAGATTA chrXIII:131641-132104 - 37 2.10e-10 TAGCTCGCGT GGCGTAATGGCAACGCGTCTGACTTCTAAT CAGAAGATTA chrXIII:747706-748146 - 50 2.10e-10 TAGCTCGCGT GGCGTAATGGCAACGCGTCTGACTTCTAAT CAGAAGATTA chrXVI:769006-769501 - 61 3.46e-10 ATCCTTGTTA GCTCAGTTGGTAGAGCGTTCGGCTTTTAAG CGCATTTGCT chrVII:115336-115748 + 5 3.46e-10 GTTA GCTCAGTTGGTAGAGCGTTCGGCTTTTAAG CGCATTTGCT chrX:523722-523822 - 37 6.29e-10 AGGCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAAT CTTTTGGGCT chrIV:1305392-1305860 + 63 6.29e-10 AGGCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAAT CTTTTGGG chrXII:167743-168227 - 52 6.29e-10 TGGCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAAT CTTTTGGGCT chrIII:149729-150199 + 14 1.24e-09 TGAGCGCCGT GGCGCAGTGGAAGCGCGCAGGGCTCATAAC CCTGATGTCC chrX:517652-517752 - 23 1.24e-09 TAAGCGCCGT GGCGCAGTGGAAGCGCGCAGGGCTCATAAC CCTGATGTCC chrXVI:622346-622848 - 46 1.38e-09 TGCGGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGAA AAAACTTCGG chrXIV:374648-375123 + 43 1.38e-09 AGCGGACTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGAA AAACTTCGGT chrII:36232-36641 + 21 1.38e-09 AGCGGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGAA AAACTTCGGT chrVIII:358295-358782 - 43 1.38e-09 AGCGGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGAA AAAACTTCGG chrIX:183290-183705 - 27 2.88e-09 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAAC GCGGGGATCA chrXVI:880075-880577 - 54 2.88e-09 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAAC GCGGGGATCA chrXVI:435648-436218 - 44 2.88e-09 AAGCTCGTAT GGCGCAGTGGTAGCGCAGCAGATTGCAAAT CTGTTGGTCC chrII:642844-643248 - 45 2.88e-09 AAGCTCGTAT GGCGCAGTGGTAGCGCAGCAGATTGCAAAT CTGTTGGTCC chrXIV:569648-570159 - 48 2.88e-09 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAAC GCGGGGATCA chrXIV:602107-602566 + 36 2.88e-09 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAAC GCGGGGATCA chrIV:519653-519951 + 1 6.94e-09 . CCGAGTGGTCTAAGGCGGCAGACTTAAGAT CTGTTGGACG chrX:424253-424353 - 45 6.94e-09 GGAGGGTTGG CCGAGTGGTCTAAGGCGGCAGACTTAAGAT CTGTTGGACG chrXV:274451-274969 + 22 1.43e-08 TGTCCCAGTG GCCGAGTGGTTAAGGCGATGCCCTGCTATT TCCTCAGAAA chrVII:661517-661977 + 60 3.29e-08 TTGCCTCCTT AGCTTAGTGGTAGAGCGTTGCACTTGTAAT GCAAAGGTCG chrXVI:744084-744559 + 21 3.29e-08 AAGCCTCCTT AGCTTAGTGGTAGAGCGTTGCACTTGTAAT GCAAAGGTCG chrVIII:466807-467274 + 8 3.29e-08 CCTCCTT AGCTTAGTGGTAGAGCGTTGCACTTGTAAT GCAAAGGTCG chrXIII:572674-573151 - 55 3.85e-08 AGCTTCAGTA GCTCAGTAGGAAGAGCGTCAGTCTCATAAT CTGAAGGTCG chrVII:878484-879042 - 65 4.16e-08 AGCGGT GGCTCAATGGTAGAGCTTTCGACTCCAATT AAATCTTGGA chrXI:302705-303223 + 12 4.16e-08 ATGAAGCGGT GGCTCAATGGTAGAGCTTTCGACTCCAATT AAATCTTGGA chrX:415731-415831 - 65 4.16e-08 AGCGGT GGCTCAATGGTAGAGCTTTCGACTCCAATT AAATCTTGGA chrXIII:837702-838238 + 19 7.04e-08 TCTCGGTAGC CAAGTTGGTTTAAGGCGCAAGACTGTAATT TACCACTACG chrX:542798-542898 - 19 7.04e-08 TCTCGGTAGC CAAGTTGGTTTAAGGCGCAAGACTGTAATT TATCACTACG chrVI:167231-167698 + 34 7.04e-08 TCTCGGTAGC CAAGTTGGTTTAAGGCGCAAGACTGTAATT TACCACTACG chrXII:605140-605635 - 57 7.56e-08 TGCTCGTGTA GCTCAGTGGTTAGAGCTTCGTGCTTATAGC AACATTCGGT chrXII:592316-592808 - 68 9.36e-08 TGG CCGAGTGGTTTAAGGCGTCAGATTTAGGTG GATTTAACCT chrX:617710-617810 + 46 9.36e-08 GGGAGTTTGG CCGAGTGGTTTAAGGCGTCAGATTTAGGTG GATTTAACCT chrXI:83968-84447 + 61 1.23e-07 GGAGGGTTGG CCGAGTGGTCTAATGCGGCAGACTTAAGAT CTGTTGGACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCVRDKKGKTARVGCGYMDGACTNHWAAT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:353894-354317 1.2e-11 19_[-2]_51 chrXVI:581830-582355 1.4e-11 28_[+2]_42 chrV:435577-435997 1.4e-11 48_[-2]_22 chrIX:299998-300501 1.4e-11 62_[-2]_8 chrX:414804-414904 1.4e-11 11_[+2]_59 chrVII:122058-122481 1.4e-11 58_[+2]_12 chrVII:730955-731418 9.5e-11 10_[+2]_60 chrXI:74403-74836 9.5e-11 64_[+2]_6 chrXIV:632415-632838 9.5e-11 32_[+2]_38 chrIII:127587-127897 9.5e-11 33_[+2]_37 chrXI:490739-491215 1.1e-10 49_[+2]_21 chrXV:340149-340586 1.1e-10 15_[-2]_55 chrXII:374066-374669 1.1e-10 46_[+2]_24 chrIV:619719-620264 1.1e-10 61_[-2]_9 chrX:374210-374310 2.1e-10 55_[-2]_15 chrXIII:131641-132104 2.1e-10 36_[-2]_34 chrXIII:747706-748146 2.1e-10 49_[-2]_21 chrXVI:769006-769501 3.5e-10 60_[-2]_10 chrVII:115336-115748 3.5e-10 4_[+2]_66 chrX:523722-523822 6.3e-10 36_[-2]_34 chrIV:1305392-1305860 6.3e-10 62_[+2]_8 chrXII:167743-168227 6.3e-10 51_[-2]_19 chrIII:149729-150199 1.2e-09 13_[+2]_57 chrX:517652-517752 1.2e-09 22_[-2]_48 chrXVI:622346-622848 1.4e-09 45_[-2]_25 chrXIV:374648-375123 1.4e-09 42_[+2]_28 chrII:36232-36641 1.4e-09 20_[+2]_50 chrVIII:358295-358782 1.4e-09 42_[-2]_28 chrIX:183290-183705 2.9e-09 26_[-2]_44 chrXVI:880075-880577 2.9e-09 53_[-2]_17 chrXVI:435648-436218 2.9e-09 43_[-2]_27 chrII:642844-643248 2.9e-09 44_[-2]_26 chrXIV:569648-570159 2.9e-09 47_[-2]_23 chrXIV:602107-602566 2.9e-09 35_[+2]_35 chrIV:519653-519951 6.9e-09 [+2]_70 chrX:424253-424353 6.9e-09 44_[-2]_26 chrXV:274451-274969 1.4e-08 21_[+2]_49 chrVII:661517-661977 3.3e-08 59_[+2]_11 chrXVI:744084-744559 3.3e-08 20_[+2]_50 chrVIII:466807-467274 3.3e-08 7_[+2]_63 chrXIII:572674-573151 3.8e-08 54_[-2]_16 chrVII:878484-879042 4.2e-08 64_[-2]_6 chrXI:302705-303223 4.2e-08 11_[+2]_59 chrX:415731-415831 4.2e-08 64_[-2]_6 chrXIII:837702-838238 7e-08 18_[+2]_52 chrX:542798-542898 7e-08 18_[-2]_52 chrVI:167231-167698 7e-08 33_[+2]_37 chrXII:605140-605635 7.6e-08 56_[-2]_14 chrXII:592316-592808 9.4e-08 67_[-2]_3 chrX:617710-617810 9.4e-08 45_[+2]_25 chrXI:83968-84447 1.2e-07 60_[+2]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCVRDKKGKTARVGCGYMDGACTNHWAAT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCCVRDKKGKTARVGCGYMDGACTNHWAAT width=30 seqs=51 chrXV:353894-354317 ( 20) GCCAAGTTGGTAAGGCGCCACACTAGTAAT 1 chrXVI:581830-582355 ( 29) GCGCAATCGGTAGCGCGTATGACTCTTAAT 1 chrV:435577-435997 ( 49) GCGCAATCGGTAGCGCGTATGACTCTTAAT 1 chrIX:299998-300501 ( 63) GCGCAATCGGTAGCGCGTATGACTCTTAAT 1 chrX:414804-414904 ( 12) GCGCAATCGGTAGCGCGTATGACTCTTAAT 1 chrVII:122058-122481 ( 59) GCGCAATCGGTAGCGCGTATGACTCTTAAT 1 chrVII:730955-731418 ( 11) CCAAGTTGGTTAAGGCGTGCGACTGTTAAT 1 chrXI:74403-74836 ( 65) CCAAGTTGGTTAAGGCGTGCGACTGTTAAT 1 chrXIV:632415-632838 ( 33) CCAAGTTGGTTAAGGCGTGCGACTGTTAAT 1 chrIII:127587-127897 ( 34) CCAAGTTGGTTAAGGCGTGCGACTGTTAAT 1 chrXI:490739-491215 ( 50) GCCCAATGGTCACGGCGTCTGGCTACGAAC 1 chrXV:340149-340586 ( 16) GCCCAATGGTCACGGCGTCTGGCTACGAAC 1 chrXII:374066-374669 ( 47) GCCCAATGGTCACGGCGTCTGGCTACGAAC 1 chrIV:619719-620264 ( 62) GCCCAATGGTCACGGCGTCTGGCTACGAAC 1 chrX:374210-374310 ( 56) GGCGTAATGGCAACGCGTCTGACTTCTAAT 1 chrXIII:131641-132104 ( 37) GGCGTAATGGCAACGCGTCTGACTTCTAAT 1 chrXIII:747706-748146 ( 50) GGCGTAATGGCAACGCGTCTGACTTCTAAT 1 chrXVI:769006-769501 ( 61) GCTCAGTTGGTAGAGCGTTCGGCTTTTAAG 1 chrVII:115336-115748 ( 5) GCTCAGTTGGTAGAGCGTTCGGCTTTTAAG 1 chrX:523722-523822 ( 37) GCCGAGTGGTTAAGGCGAAAGATTAGAAAT 1 chrIV:1305392-1305860 ( 63) GCCGAGTGGTTAAGGCGAAAGATTAGAAAT 1 chrXII:167743-168227 ( 52) GCCGAGTGGTTAAGGCGAAAGATTAGAAAT 1 chrIII:149729-150199 ( 14) GGCGCAGTGGAAGCGCGCAGGGCTCATAAC 1 chrX:517652-517752 ( 23) GGCGCAGTGGAAGCGCGCAGGGCTCATAAC 1 chrXVI:622346-622848 ( 46) GCTCAGTTGGGAGAGCGCCAGACTGAAGAA 1 chrXIV:374648-375123 ( 43) GCTCAGTTGGGAGAGCGCCAGACTGAAGAA 1 chrII:36232-36641 ( 21) GCTCAGTTGGGAGAGCGCCAGACTGAAGAA 1 chrVIII:358295-358782 ( 43) GCTCAGTTGGGAGAGCGCCAGACTGAAGAA 1 chrIX:183290-183705 ( 27) CCCAGTTGGTTAAGGCACCGTGCTAATAAC 1 chrXVI:880075-880577 ( 54) CCCAGTTGGTTAAGGCACCGTGCTAATAAC 1 chrXVI:435648-436218 ( 44) GGCGCAGTGGTAGCGCAGCAGATTGCAAAT 1 chrII:642844-643248 ( 45) GGCGCAGTGGTAGCGCAGCAGATTGCAAAT 1 chrXIV:569648-570159 ( 48) CCCAGTTGGTTAAGGCACCGTGCTAATAAC 1 chrXIV:602107-602566 ( 36) CCCAGTTGGTTAAGGCACCGTGCTAATAAC 1 chrIV:519653-519951 ( 1) CCGAGTGGTCTAAGGCGGCAGACTTAAGAT 1 chrX:424253-424353 ( 45) CCGAGTGGTCTAAGGCGGCAGACTTAAGAT 1 chrXV:274451-274969 ( 22) GCCGAGTGGTTAAGGCGATGCCCTGCTATT 1 chrVII:661517-661977 ( 60) AGCTTAGTGGTAGAGCGTTGCACTTGTAAT 1 chrXVI:744084-744559 ( 21) AGCTTAGTGGTAGAGCGTTGCACTTGTAAT 1 chrVIII:466807-467274 ( 8) AGCTTAGTGGTAGAGCGTTGCACTTGTAAT 1 chrXIII:572674-573151 ( 55) GCTCAGTAGGAAGAGCGTCAGTCTCATAAT 1 chrVII:878484-879042 ( 65) GGCTCAATGGTAGAGCTTTCGACTCCAATT 1 chrXI:302705-303223 ( 12) GGCTCAATGGTAGAGCTTTCGACTCCAATT 1 chrX:415731-415831 ( 65) GGCTCAATGGTAGAGCTTTCGACTCCAATT 1 chrXIII:837702-838238 ( 19) CAAGTTGGTTTAAGGCGCAAGACTGTAATT 1 chrX:542798-542898 ( 19) CAAGTTGGTTTAAGGCGCAAGACTGTAATT 1 chrVI:167231-167698 ( 34) CAAGTTGGTTTAAGGCGCAAGACTGTAATT 1 chrXII:605140-605635 ( 57) GCTCAGTGGTTAGAGCTTCGTGCTTATAGC 1 chrXII:592316-592808 ( 68) CCGAGTGGTTTAAGGCGTCAGATTTAGGTG 1 chrX:617710-617810 ( 46) CCGAGTGGTTTAAGGCGTCAGATTTAGGTG 1 chrXI:83968-84447 ( 61) CCGAGTGGTCTAATGCGGCAGACTTAAGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCVRDKKGKTARVGCGYMDGACTNHWAAT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 9.43632 E= 2.0e-139 -237 68 168 -1232 -237 181 38 -1232 -115 138 0 -95 -15 76 48 -137 51 -52 38 -78 51 -1232 38 5 -137 -1232 58 95 -395 -100 132 37 -1232 -1232 210 -95 -1232 -174 138 51 -237 -52 -132 126 172 -1232 -1232 -1232 63 -132 120 -1232 -15 26 126 -395 -1232 -1232 235 -1232 -1232 235 -1232 -1232 -137 -1232 203 -195 -195 48 -100 85 -25 132 -132 -78 29 -15 14 -37 -1232 -100 203 -163 122 -332 38 -395 -1232 214 -1232 -115 -1232 -1232 -1232 172 -37 14 48 -15 13 38 -52 -15 22 -1232 -74 80 144 -1232 -15 -1232 140 -1232 -332 -78 -195 14 -132 105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCVRDKKGKTARVGCGYMDGACTNHWAAT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 51 E= 2.0e-139 0.058824 0.313725 0.627451 0.000000 0.058824 0.686275 0.254902 0.000000 0.137255 0.509804 0.196078 0.156863 0.274510 0.333333 0.274510 0.117647 0.431373 0.137255 0.254902 0.176471 0.431373 0.000000 0.254902 0.313725 0.117647 0.000000 0.294118 0.588235 0.019608 0.098039 0.490196 0.392157 0.000000 0.000000 0.843137 0.156863 0.000000 0.058824 0.509804 0.431373 0.058824 0.137255 0.078431 0.725490 1.000000 0.000000 0.000000 0.000000 0.470588 0.078431 0.450980 0.000000 0.274510 0.235294 0.470588 0.019608 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.117647 0.000000 0.803922 0.078431 0.078431 0.274510 0.098039 0.549020 0.254902 0.490196 0.078431 0.176471 0.372549 0.176471 0.215686 0.235294 0.000000 0.098039 0.803922 0.098039 0.705882 0.019608 0.254902 0.019608 0.000000 0.862745 0.000000 0.137255 0.000000 0.000000 0.000000 1.000000 0.235294 0.215686 0.274510 0.274510 0.333333 0.254902 0.137255 0.274510 0.352941 0.000000 0.117647 0.529412 0.823529 0.000000 0.176471 0.000000 0.803922 0.000000 0.019608 0.176471 0.078431 0.215686 0.078431 0.627451 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCVRDKKGKTARVGCGYMDGACTNHWAAT MEME-2 regular expression -------------------------------------------------------------------------------- [GC][CG]C[CAG][AG][ATG][TG][GT]G[GT]TA[AG][GAC]GCG[TC][CA][ATG]G[AG]CT[GTAC][ATC][TA]AA[TC] -------------------------------------------------------------------------------- Time 675.91 secs. ******************************************************************************** ******************************************************************************** MOTIF ASSKVMHRTKMTRRCCRTTAMACTA MEME-3 width = 25 sites = 22 llr = 518 E-value = 1.1e-082 ******************************************************************************** -------------------------------------------------------------------------------- Motif ASSKVMHRTKMTRRCCRTTAMACTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 7:::3624::6:66::6::a4a::a pos.-specific C :56:444:::4:::aa:3::6:a:: probability G 35464::6:6::44::4:::::::: matrix T :::4::3:a4:a:::::7a::::a: bits 2.3 ** * 2.1 ** * 1.9 ** * 1.6 * * ** ** **** Relative 1.4 ** * * ** ** **** Entropy 1.2 ** *** * ** ******* (33.9 bits) 0.9 **** ****************** 0.7 ****** ****************** 0.5 ****** ****************** 0.2 ************************* 0.0 ------------------------- Multilevel ACCGCACGTGATAACCATTACACTA consensus GGGTGCTA TC GG GC A sequence A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASSKVMHRTKMTRRCCRTTAMACTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------- chrXIII:808043-808539 + 45 4.01e-12 TCGGATCAGA ACCGAAAGTGATAACCACTACACTA TAGGACCTTT chrII:350623-351068 - 39 4.01e-12 CCGGATCAAA ACCGAAAGTGATAACCACTACACTA TAAAACCCTT chrIV:802586-803010 + 23 4.01e-12 CCGGATCAAA ACCGAAAGTGATAACCACTACACTA TAGGACCGAC chrVIII:133983-134765 - 4 4.01e-12 CCGGATCAAA ACCGAAAGTGATAACCACTACACTA TAG chrV:130840-131366 + 69 4.01e-12 TCGGATCAAA ACCGAAAGTGATAACCACTACACTA TAAAACC chrIX:197355-197818 - 63 4.76e-12 CACGGTGAGA ACGTGATGTGATAGCCGTTACACTA CATCGGATTT chrIV:1016971-1017496 + 64 4.76e-12 CACGGTGAGA ACGTGATGTGATAGCCGTTACACTA CATCGGATTG chrIII:82379-82697 + 14 1.11e-11 CACGGTGAAA GCGTGATGTGATAGCCGTTACACTA TATCGGATAA chrX:115755-115855 + 41 1.11e-11 CACGGTGAAA GCGTGATGTGATAGCCGTTACACTA TATCGGATTA chrIX:370222-370709 - 9 1.11e-11 CACGGTGAAA GCGTGATGTGATAGCCGTTACACTA TATCGGAT chrXI:140646-141458 + 56 1.11e-11 CACGGTGAAA GCGTGATGTGATAGCCGTTACACTA TATCGGATTA chrII:644897-645447 - 52 1.11e-11 CACGGTGAAA GCGTGATGTGATAGCCGTTACACTA TATCGGATAA chrX:355181-355281 - 47 1.99e-11 GCACGCGACA AGCGCCCATTCTGACCATTAAACTA TCACGGAAGA chrXV:571753-572148 - 65 1.99e-11 GCACGCGACA AGCGCCCATTCTGACCATTAAACTA TCACGGATTT chrIV:568691-569347 - 2 1.99e-11 GCACGCGACA AGCGCCCATTCTGACCATTAAACTA T chrX:204543-204643 - 19 1.99e-11 GCACGCGACA AGCGCCCATTCTGACCATTAAACTA TCACGGATTT chrVII:544405-544889 + 20 1.99e-11 GCACGCGACA AGCGCCCATTCTGACCATTAAACTA TCACGGAAGA chrXI:513115-513612 + 59 1.99e-11 GCACGCGACA AGCGCCCATTCTGACCATTAAACTA TCACGGAACG chrXII:426911-427453 - 7 1.99e-11 GCACGCGACA AGCGCCCATTCTGACCATTAAACTA TCACGG chrII:405674-406250 - 55 1.99e-11 GCACGCGACA AGCGCCCATTCTGACCATTAAACTA TCACGGAAGA chrIV:1075296-1075752 + 39 4.99e-11 TGCCGTGTGA AGGCAACGTGATAGCCGCTACACTA TTGGAACAAT chrXIV:96045-96520 + 49 1.55e-10 CACCTTGGAA GGGTGGGATGATAACCACTACACTA ACCGCCCATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASSKVMHRTKMTRRCCRTTAMACTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:808043-808539 4e-12 44_[+3]_31 chrII:350623-351068 4e-12 38_[-3]_37 chrIV:802586-803010 4e-12 22_[+3]_53 chrVIII:133983-134765 4e-12 3_[-3]_72 chrV:130840-131366 4e-12 68_[+3]_7 chrIX:197355-197818 4.8e-12 62_[-3]_13 chrIV:1016971-1017496 4.8e-12 63_[+3]_12 chrIII:82379-82697 1.1e-11 13_[+3]_62 chrX:115755-115855 1.1e-11 40_[+3]_35 chrIX:370222-370709 1.1e-11 8_[-3]_67 chrXI:140646-141458 1.1e-11 55_[+3]_20 chrII:644897-645447 1.1e-11 51_[-3]_24 chrX:355181-355281 2e-11 46_[-3]_29 chrXV:571753-572148 2e-11 64_[-3]_11 chrIV:568691-569347 2e-11 1_[-3]_74 chrX:204543-204643 2e-11 18_[-3]_57 chrVII:544405-544889 2e-11 19_[+3]_56 chrXI:513115-513612 2e-11 58_[+3]_17 chrXII:426911-427453 2e-11 6_[-3]_69 chrII:405674-406250 2e-11 54_[-3]_21 chrIV:1075296-1075752 5e-11 38_[+3]_37 chrXIV:96045-96520 1.6e-10 48_[+3]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASSKVMHRTKMTRRCCRTTAMACTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ASSKVMHRTKMTRRCCRTTAMACTA width=25 seqs=22 chrXIII:808043-808539 ( 45) ACCGAAAGTGATAACCACTACACTA 1 chrII:350623-351068 ( 39) ACCGAAAGTGATAACCACTACACTA 1 chrIV:802586-803010 ( 23) ACCGAAAGTGATAACCACTACACTA 1 chrVIII:133983-134765 ( 4) ACCGAAAGTGATAACCACTACACTA 1 chrV:130840-131366 ( 69) ACCGAAAGTGATAACCACTACACTA 1 chrIX:197355-197818 ( 63) ACGTGATGTGATAGCCGTTACACTA 1 chrIV:1016971-1017496 ( 64) ACGTGATGTGATAGCCGTTACACTA 1 chrIII:82379-82697 ( 14) GCGTGATGTGATAGCCGTTACACTA 1 chrX:115755-115855 ( 41) GCGTGATGTGATAGCCGTTACACTA 1 chrIX:370222-370709 ( 9) GCGTGATGTGATAGCCGTTACACTA 1 chrXI:140646-141458 ( 56) GCGTGATGTGATAGCCGTTACACTA 1 chrII:644897-645447 ( 52) GCGTGATGTGATAGCCGTTACACTA 1 chrX:355181-355281 ( 47) AGCGCCCATTCTGACCATTAAACTA 1 chrXV:571753-572148 ( 65) AGCGCCCATTCTGACCATTAAACTA 1 chrIV:568691-569347 ( 2) AGCGCCCATTCTGACCATTAAACTA 1 chrX:204543-204643 ( 19) AGCGCCCATTCTGACCATTAAACTA 1 chrVII:544405-544889 ( 20) AGCGCCCATTCTGACCATTAAACTA 1 chrXI:513115-513612 ( 59) AGCGCCCATTCTGACCATTAAACTA 1 chrXII:426911-427453 ( 7) AGCGCCCATTCTGACCATTAAACTA 1 chrII:405674-406250 ( 55) AGCGCCCATTCTGACCATTAAACTA 1 chrIV:1075296-1075752 ( 39) AGGCAACGTGATAGCCGCTACACTA 1 chrXIV:96045-96520 ( 49) GGGTGGGATGATAACCACTACACTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASSKVMHRTKMTRRCCRTTAMACTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 45600 bayes= 10.5689 E= 1.1e-082 126 -1110 47 -1110 -1110 147 121 -1110 -1110 159 106 -1110 -1110 -211 159 26 -16 89 89 -1110 96 89 -211 -1110 -42 106 -211 7 43 -1110 159 -1110 -1110 -1110 -1110 172 -1110 -1110 170 26 107 89 -1110 -1110 -1110 -1110 -1110 172 107 -1110 89 -1110 107 -1110 89 -1110 -1110 235 -1110 -1110 -1110 235 -1110 -1110 107 -1110 89 -1110 -1110 70 -1110 117 -1110 -1110 -1110 172 172 -1110 -1110 -1110 26 170 -1110 -1110 172 -1110 -1110 -1110 -1110 235 -1110 -1110 -1110 -1110 -1110 172 172 -1110 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASSKVMHRTKMTRRCCRTTAMACTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 22 E= 1.1e-082 0.727273 0.000000 0.272727 0.000000 0.000000 0.545455 0.454545 0.000000 0.000000 0.590909 0.409091 0.000000 0.000000 0.045455 0.590909 0.363636 0.272727 0.363636 0.363636 0.000000 0.590909 0.363636 0.045455 0.000000 0.227273 0.409091 0.045455 0.318182 0.409091 0.000000 0.590909 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.636364 0.363636 0.636364 0.363636 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.636364 0.000000 0.363636 0.000000 0.636364 0.000000 0.363636 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.636364 0.000000 0.363636 0.000000 0.000000 0.318182 0.000000 0.681818 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.363636 0.636364 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASSKVMHRTKMTRRCCRTTAMACTA MEME-3 regular expression -------------------------------------------------------------------------------- [AG][CG][CG][GT][CGA][AC][CTA][GA]T[GT][AC]T[AG][AG]CC[AG][TC]TA[CA]ACTA -------------------------------------------------------------------------------- Time 987.66 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:332281-333014 7.21e-01 100 chrVIII:296764-297287 2.43e-01 100 chrXV:159182-160738 8.61e-01 100 chrVII:310463-312527 2.88e-01 100 chrXI:313201-314043 9.03e-01 100 chrI:141561-143654 6.42e-01 100 chrIV:1344615-1346121 9.59e-01 100 chrXVI:822782-824242 6.30e-01 100 chrXIII:747706-748146 3.07e-12 24_[-1(4.55e-09)]_4_[-2(2.10e-10)]_\ 21 chrVII:561438-561719 6.56e-01 100 chrVII:436695-439974 9.29e-02 100 chrXI:431855-432325 2.34e-01 100 chrIV:600627-602307 9.30e-02 63_[-2(5.03e-05)]_7 chrIII:90856-91120 3.31e-01 100 chrXVI:559947-560287 9.53e-01 100 chrIV:1075296-1075752 4.64e-14 6_[-1(1.14e-10)]_11_[+3(4.99e-11)]_\ 37 chrXI:614854-615302 2.77e-01 100 chrIX:336094-336623 3.23e-04 49_[-1(3.50e-08)]_30 chrXIV:602107-602566 2.59e-12 35_[+2(2.88e-09)]_4_[+1(9.80e-11)]_\ 10 chrIV:946141-946618 2.96e-04 41_[+1(1.33e-07)]_38 chrXII:515298-516831 3.02e-01 100 chrIX:332161-333289 6.36e-02 100 chrII:255064-255760 4.99e-01 100 chrXI:517317-518313 6.28e-03 63_[-1(1.54e-06)]_16 chrXVI:280520-283246 4.43e-01 100 chrVII:479141-482950 6.55e-01 100 chrXV:832261-832839 9.11e-01 100 chrXII:214679-215063 3.81e-06 70_[-1(1.85e-10)]_9 chrVII:920985-921934 7.83e-01 100 chrXV:899870-901666 7.38e-01 100 chrXIII:224074-224803 5.88e-01 100 chrV:130840-131366 7.89e-14 37_[-1(8.85e-09)]_10_[+3(4.01e-12)]_\ 7 chrXVI:642266-643392 9.21e-01 100 chrII:476959-477775 7.63e-01 100 chrIV:667742-668207 9.47e-01 100 chrXV:742197-742620 4.92e-01 100 chrIV:835717-837993 5.22e-01 100 chrXIII:872580-873079 2.15e-01 100 chrVII:227306-228707 9.98e-01 100 chrXII:808975-815738 7.89e-01 100 chrVIII:361989-362887 6.02e-01 100 chrX:608406-608506 7.91e-01 100 chrVII:397919-400146 7.84e-01 100 chrVIII:466807-467274 5.86e-09 7_[+2(3.29e-08)]_4_[+1(8.27e-08)]_\ 38 chrXII:949010-953925 7.21e-01 100 chrXIII:302714-303568 6.76e-01 100 chrXIV:351613-352945 5.88e-01 100 chrXIV:776679-777321 4.46e-02 100 chrII:235002-235991 1.45e-01 100 chrXVI:775606-776097 9.41e-01 100 chrXIII:161938-162678 1.39e-01 100 chrIX:68247-68518 9.55e-01 100 chrXV:677937-679179 6.05e-01 100 chrXIII:290591-291131 1.63e-06 31_[+1(3.93e-10)]_48 chrVII:986581-987805 3.11e-01 100 chrXII:47442-49209 6.96e-01 100 chrX:424253-424353 7.50e-09 4_[+1(2.23e-07)]_19_[-2(6.94e-09)]_\ 26 chrVII:122058-122481 2.05e-07 58_[+2(1.41e-11)]_12 chrXVI:431847-434391 3.51e-01 100 chrVI:210460-211045 6.35e-01 100 chrXI:381697-382496 5.41e-01 100 chrXII:924468-925039 7.99e-01 100 chrXII:167743-168227 8.12e-08 17_[-1(4.64e-05)]_13_[-2(6.29e-10)]_\ 19 chrXI:141698-142796 4.49e-01 100 chrV:241956-242604 7.83e-01 100 chrIV:992687-993127 8.44e-07 15_[+1(1.34e-10)]_64 chrVII:323428-324181 7.86e-01 100 chrXIII:407800-408822 3.39e-01 100 chrXIV:240860-241826 9.36e-01 100 chrII:680284-682443 9.24e-01 100 chrXII:636686-640027 7.48e-01 100 chrVIII:48178-48978 7.69e-01 100 chrXI:219585-220089 8.89e-01 100 chrXII:11257-11481 4.11e-01 100 chrXIII:67308-68068 8.82e-01 100 chrIII:78322-78855 6.30e-01 100 chrV:270346-270871 9.86e-01 100 chrXII:568035-569087 3.81e-01 100 chrIV:1156294-1156843 9.18e-01 100 chrXII:253121-255027 9.65e-01 100 chrVII:328409-329190 9.59e-01 100 chrXVI:585585-587718 7.89e-01 100 chrVI:167231-167698 1.90e-04 33_[+2(7.04e-08)]_37 chrXIV:771887-772429 6.67e-01 100 chrVII:882432-884078 5.74e-01 100 chrXII:498372-499742 8.57e-01 100 chrII:45589-46826 4.38e-01 100 chrXII:1012117-1012495 4.45e-01 100 chrXV:980102-981070 5.40e-01 100 chrVIII:119688-121703 1.28e-01 100 chrII:405674-406250 9.30e-14 7_[+1(4.55e-09)]_26_[-3(1.99e-11)]_\ 21 chrIII:127587-127897 4.21e-11 33_[+2(9.52e-11)]_4_[+1(7.62e-08)]_\ 12 chrXVI:75022-77258 4.73e-01 100 chrIV:306659-307804 3.54e-02 100 chrXV:274451-274969 7.71e-05 21_[+2(1.43e-08)]_49 chrVII:794167-794558 9.46e-01 100 chrXVI:425135-425901 1.06e-02 63_[+2(3.40e-05)]_7 chrXII:656827-657220 5.77e-02 1_[+3(4.61e-05)]_74 chrXVI:821639-822328 8.54e-01 100 chrII:555762-556280 8.93e-01 100 chrVI:30847-32409 7.24e-01 100 chrIII:123352-123823 3.26e-08 48_[-1(5.24e-12)]_31 chrXVI:645985-646225 3.37e-01 100 chrXIII:145835-147197 8.96e-01 100 chrXII:440487-442055 2.95e-01 100 chrII:644897-645447 1.11e-08 51_[-3(1.11e-11)]_24 chrVIII:115117-116402 8.31e-01 100 chrXVI:927749-928213 9.14e-01 100 chrXIII:159267-159762 1.38e-01 100 chrXV:228067-228540 1.94e-01 100 chrII:326571-327095 8.94e-06 17_[-1(2.53e-09)]_62 chrIX:140621-142319 2.58e-01 100 chrIV:488401-489165 8.49e-06 72_[-1(2.53e-09)]_7 chrIII:68428-68636 9.23e-01 100 chrV:23504-23838 2.88e-01 100 chrXVI:930686-931007 4.39e-01 100 chrXV:639008-639463 5.20e-01 100 chrXII:1028183-1028628 6.29e-01 100 chrIX:127409-130188 7.48e-01 100 chrXV:505080-505520 6.78e-01 100 chrVII:798614-800110 5.36e-01 100 chrXIII:731671-733417 8.86e-01 100 chrI:68288-69251 8.61e-01 100 chrIV:555408-556646 3.84e-01 100 chrV:354703-355354 5.95e-01 100 chrVII:599334-601484 3.99e-01 100 chrXVI:55863-56423 4.09e-01 100 chrXIII:873853-874176 9.16e-02 72_[+3(8.24e-05)]_3 chrXV:908454-911591 4.94e-01 100 chrX:607908-608008 9.37e-01 100 chrVII:736189-736806 1.00e+00 100 chrX:517652-517752 7.54e-06 22_[-2(1.24e-09)]_48 chrXII:710514-710974 2.21e-01 100 chrXII:366025-366553 6.15e-02 100 chrIV:541221-541985 9.79e-01 100 chrXIII:753017-755236 3.62e-01 100 chrXIV:568052-568644 8.63e-01 100 chrIV:1236498-1238005 7.74e-01 100 chrVII:647999-648503 7.69e-01 100 chrXI:518624-521162 3.73e-01 100 chrXI:379689-380195 8.15e-01 100 chrV:176898-177477 2.99e-06 3_[+1(3.93e-10)]_76 chrXI:618712-619312 3.61e-01 100 chrXV:770155-770477 2.48e-01 100 chrIV:1095123-1095659 4.46e-04 37_[-1(4.99e-08)]_42 chrI:180943-181484 1.33e-01 100 chrVII:545137-545987 5.14e-01 100 chrX:617710-617810 5.65e-05 45_[+2(9.36e-08)]_25 chrXI:162184-162761 1.46e-05 73_[-1(4.55e-09)]_6 chrVIII:50182-51704 9.65e-01 100 chrXIV:107151-107461 1.70e-01 100 chrVII:1011099-1011403 2.01e-01 100 chrXIII:549726-553260 7.91e-01 100 chrIV:520719-521171 6.39e-01 100 chrVIII:358295-358782 4.33e-06 42_[-2(1.38e-09)]_28 chrIV:1256830-1257277 9.75e-09 13_[-1(1.85e-10)]_10_[+3(1.24e-05)]_\ 31 chrVII:700217-701254 3.59e-05 41_[+1(4.99e-08)]_38 chrX:156301-156401 1.41e-01 100 chrIV:321654-321988 2.88e-01 100 chrXII:603536-604080 9.17e-01 100 chrVIII:103555-105522 5.88e-01 100 chrXIII:305992-307272 5.84e-01 100 chrVI:101166-101655 5.24e-02 27_[-3(7.87e-05)]_48 chrVII:364876-366708 9.66e-01 100 chrIV:1434422-1434723 9.57e-01 100 chrIV:307983-310166 3.45e-02 100 chrXIII:91043-92105 4.52e-01 100 chrVIII:125881-127510 7.67e-01 100 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chrXVI:575809-576427 6.11e-01 100 chrXVI:134686-135862 6.21e-01 100 chrXV:391016-392512 5.96e-01 100 chrIX:197355-197818 1.30e-07 62_[-3(4.76e-12)]_13 chrXV:407548-408208 5.77e-01 100 chrVII:706916-707181 9.92e-01 100 chrXVI:578648-581170 7.17e-01 100 chrIV:229461-231819 9.15e-01 100 chrXVI:640601-641666 8.67e-01 100 chrIV:129428-131043 5.19e-01 100 chrXV:464272-464823 9.50e-06 24_[+1(3.62e-09)]_55 chrXIII:554816-556707 1.28e-01 100 chrXIV:525072-525274 3.06e-01 100 chrXII:930324-931855 4.39e-01 100 chrXII:687667-687902 6.44e-01 100 chrXVI:188352-188964 6.76e-03 17_[-1(7.41e-05)]_62 chrXV:1003953-1004981 9.62e-01 100 chrIV:975684-977179 8.49e-01 100 chrVII:930834-931645 9.83e-01 100 chrXIV:374648-375123 3.65e-06 42_[+2(1.38e-09)]_28 chrV:469224-469668 9.67e-01 100 chrXVI:302506-304290 1.52e-01 100 chrXIV:725923-726338 9.00e-04 57_[+1(2.23e-07)]_22 chrIV:411058-411701 8.21e-01 100 chrIV:1301538-1302531 3.91e-01 100 chrXVI:39241-40640 9.81e-01 100 chrV:51772-53279 9.34e-01 100 chrV:85057-86919 2.46e-01 100 chrX:73353-73453 1.97e-01 100 chrXIII:267669-268339 9.89e-01 100 chrVIII:16708-18337 8.65e-01 100 chrXV:109381-111279 2.90e-01 100 chrII:256199-257840 9.18e-01 100 chrIII:82379-82697 1.36e-07 13_[+3(1.11e-11)]_62 chrXII:783925-784746 8.07e-02 100 chrXII:198468-199785 3.18e-01 100 chrXIII:258882-259380 7.34e-01 100 chrX:662759-662859 4.77e-02 17_[-2(9.30e-05)]_53 chrIX:23466-25274 2.86e-01 100 chrXI:302705-303223 1.42e-08 11_[+2(4.16e-08)]_38_[+1(8.27e-08)] chrIII:15336-16843 5.70e-01 100 chrV:266194-268137 5.12e-01 100 chrX:139145-139245 6.99e-01 100 chrIX:391800-391997 9.70e-01 100 chrVIII:174408-175753 8.95e-01 100 chrV:434388-434978 5.65e-01 100 chrX:531569-531669 1.63e-06 [+1(1.34e-10)]_79 chrX:390856-390956 9.18e-01 100 chrXII:713145-713607 6.64e-01 100 chrXVI:591096-591576 5.26e-01 100 chrXII:855762-857564 4.85e-01 100 chrXV:300912-301773 7.85e-01 100 chrII:59584-61300 5.36e-01 100 chrIV:568691-569347 5.87e-12 1_[-3(1.99e-11)]_10_[+1(3.50e-08)]_\ 43 chrIV:340197-341659 6.53e-01 100 chrXII:712272-712724 9.50e-01 100 chrVIII:554122-554734 3.67e-01 100 chrXI:364452-365249 8.70e-01 100 chrXIV:102582-103136 4.82e-01 100 chrVIII:145972-146464 2.55e-01 100 chrXV:384602-385083 6.60e-02 63_[+2(3.40e-05)]_7 chrXV:80393-81524 8.93e-01 100 chrV:77397-79884 4.05e-01 100 chrVII:384321-385008 1.94e-01 100 chrIV:599506-600432 5.43e-01 100 chrXVI:810580-811406 4.96e-01 100 chrVI:190946-191778 9.90e-01 100 chrII:162964-163950 5.64e-01 100 chrXIV:330513-332551 1.55e-01 100 chrXV:571753-572148 5.86e-07 64_[-3(1.99e-11)]_11 chrXVI:731620-732373 8.17e-01 100 chrVII:876167-878144 9.10e-01 100 chrX:355181-355281 4.29e-08 46_[-3(1.99e-11)]_29 chrVII:878484-879042 1.42e-08 5_[-1(8.27e-08)]_38_[-2(4.16e-08)]_\ 6 chrXVI:828793-829459 7.30e-01 100 chrII:88902-90244 1.21e-01 100 chrVII:370667-371567 6.23e-01 100 chrVII:766067-766781 6.78e-01 100 chrX:650781-650881 4.03e-01 100 chrIV:1150705-1151154 2.04e-01 100 chrIX:254184-254589 1.70e-01 100 chrII:392524-398093 9.81e-01 100 chrXI:490739-491215 5.74e-07 49_[+2(1.09e-10)]_21 chrIX:183290-183705 2.59e-12 1_[-1(9.80e-11)]_4_[-2(2.88e-09)]_\ 44 chrIV:117144-117918 3.05e-01 100 chrXII:932050-932532 6.52e-01 100 chrXII:592316-592808 6.99e-05 67_[-2(9.36e-08)]_3 chrIX:257310-258254 3.91e-01 100 chrXIII:362945-363342 5.68e-03 12_[+1(1.01e-06)]_67 chrIV:1354293-1356009 1.65e-01 100 chrXVI:502430-503318 2.36e-01 100 chrXV:881787-882436 9.74e-01 100 chrVIII:401076-401262 5.58e-02 100 chrXVI:519883-520564 3.65e-02 100 chrIV:1489033-1490542 3.73e-01 100 chrIV:1300439-1301356 6.71e-01 100 chrXII:447797-448849 9.07e-01 100 chrII:372811-375790 3.88e-01 100 chrXV:520551-520953 4.56e-01 100 chrXVI:622346-622848 1.82e-10 1_[-1(4.99e-08)]_23_[-2(1.38e-09)]_\ 25 chrXII:83995-84373 5.63e-01 100 chrXI:46712-46993 6.22e-01 100 chrVI:226371-227311 4.95e-01 100 chrXIII:837702-838238 2.83e-08 18_[+2(7.04e-08)]_18_[+1(1.33e-07)]_\ 13 chrIV:1461469-1461843 8.82e-02 100 chrXIII:195930-196302 9.76e-07 10_[-1(3.62e-09)]_36_[+3(7.87e-05)]_\ 8 chrVII:345874-346702 1.43e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************