Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.022077 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.059801 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.078993 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.013264 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.068523 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background Finished invoke: name: bg status: 0 time: 0.021919 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 993.199951 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/seqs-shuffled Finished invoke: name: dreme status: 0 time: 51.204389 Invoking: centrimo -seqlen 508 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.1609 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.442994 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background -primary RAGRTCMSSGGTTCGAKYCCSSGHKNGRBC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.624084 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background -primary KAAAAAAAAAAAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.609639 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background -primary YGGTAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.632265 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background -primary CGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.280212 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background -primary AASTTGGT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.303226 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background -primary AAGATK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.671792 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background -primary CAWCAAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.40727 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background --motif RAGRTCMSSGGTTCGAKYCCSSGHKNGRBC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa Finished invoke: name: fimo1 status: 0 time: 0.527255 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background --motif KAAAAAAAAAAAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa Finished invoke: name: fimo2 status: 0 time: 0.528134 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background --motif YGGTAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa Finished invoke: name: fimo3 status: 0 time: 0.359798 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background --motif CGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa Finished invoke: name: fimo4 status: 0 time: 0.364776 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background --motif AASTTGGT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa Finished invoke: name: fimo5 status: 0 time: 0.386981 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background --motif AAGATK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa Finished invoke: name: fimo6 status: 0 time: 0.367582 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background --motif CAWCAAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/AWRI1631--MOT3.fa Finished invoke: name: fimo7 status: 0 time: 0.355707 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/summary.tsv Finished invoke: name: summary status: 0 time: 0.186506 Done