******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:237712-238162 1.0000 100 chrVIII:119611-121711 1.0000 100 chrXV:28749-30839 1.0000 100 chrVI:220027-221568 1.0000 100 chrXI:302704-303231 1.0000 100 chrI:71631-73711 1.0000 100 chrIV:1162454-1164790 1.0000 100 chrXVI:818611-821229 1.0000 100 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1.0000 100 chrVII:706919-707173 1.0000 100 chrII:591364-591811 1.0000 100 chrIII:177027-178850 1.0000 100 chrXII:837594-839435 1.0000 100 chrII:114011-115245 1.0000 100 chrXV:796448-798833 1.0000 100 chrVIII:410773-411775 1.0000 100 chrVII:541714-542142 1.0000 100 chrXII:257425-259502 1.0000 100 chrIV:1301535-1302869 1.0000 100 chrXIII:914702-915433 1.0000 100 chrXV:571736-572333 1.0000 100 chrIV:538826-539407 1.0000 100 chrV:225448-225718 1.0000 100 chrXV:594230-594640 1.0000 100 chrIII:69174-69531 1.0000 100 chrII:255018-255757 1.0000 100 chrXV:866596-868163 1.0000 100 chrII:45582-46844 1.0000 100 chrIX:68267-68463 1.0000 100 chrVII:533807-535164 1.0000 100 chrII:408617-408927 1.0000 100 chrXIII:605830-606007 1.0000 100 chrXI:589807-590187 1.0000 100 chrIV:306253-307852 1.0000 100 chrIV:1361678-1362608 1.0000 100 chrII:59536-61221 1.0000 100 chrIV:655712-657418 1.0000 100 chrIV:568671-569289 1.0000 100 chrIII:162102-163874 1.0000 100 chrXIV:301308-302271 1.0000 100 chrXIII:23829-25716 1.0000 100 chrXV:832206-832874 1.0000 100 chrIV:802574-803029 1.0000 100 chrI:182205-183208 1.0000 100 chrXV:911933-912666 1.0000 100 chrX:523862-523962 1.0000 100 chrXII:950122-953864 1.0000 100 chrIV:1351944-1353447 1.0000 100 chrVII:823349-823715 1.0000 100 chrXIII:754463-755262 1.0000 100 chrX:391801-391901 1.0000 100 chrI:166174-166703 1.0000 100 chrXI:355230-356497 1.0000 100 chrVII:640835-642409 1.0000 100 chrVII:294-2234 1.0000 100 chrXVI:878868-880573 1.0000 100 chrV:487136-487566 1.0000 100 chrIV:45166-46241 1.0000 100 chrIV:358034-358323 1.0000 100 chrII:236535-237374 1.0000 100 chrXII:426950-427491 1.0000 100 chrVI:63986-65335 1.0000 100 chrX:662684-662784 1.0000 100 chrXIII:277523-279833 1.0000 100 chrI:69885-70345 1.0000 100 chrV:550870-551573 1.0000 100 chrVII:316624-317418 1.0000 100 chrVII:856553-857677 1.0000 100 chrXIII:873456-873617 1.0000 100 chrVII:648739-649407 1.0000 100 chrXIV:664281-667216 1.0000 100 chrIX:322426-324378 1.0000 100 chrXIII:321006-321320 1.0000 100 chrX:354026-354126 1.0000 100 chrVII:610452-611514 1.0000 100 chrVIII:455518-455999 1.0000 100 chrXII:728970-730484 1.0000 100 chrXIII:454313-455377 1.0000 100 chrXV:1048999-1049573 1.0000 100 chrXV:216294-216689 1.0000 100 chrV:51752-53302 1.0000 100 chrXVI:39299-40662 1.0000 100 chrVII:774122-774628 1.0000 100 chrXV:960913-963497 1.0000 100 chrVIII:48201-48642 1.0000 100 chrI:65166-65408 1.0000 100 chrIV:667737-668196 1.0000 100 chrXVI:303051-304357 1.0000 100 chrV:434397-434978 1.0000 100 chrVI:82405-84430 1.0000 100 chrIV:1233680-1234248 1.0000 100 chrV:490999-491960 1.0000 100 chrXIII:219575-221005 1.0000 100 chrVI:55041-55889 1.0000 100 chrVI:136659-137693 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.297 C 0.203 G 0.203 T 0.297 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT3/background): A 0.305 C 0.195 G 0.195 T 0.305 ******************************************************************************** ******************************************************************************** MOTIF RAGRTCMSSGGTTCGAKYCCSSGHKNGRBC MEME-1 width = 30 sites = 59 llr = 1151 E-value = 2.8e-211 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGRTCMSSGGTTCGAKYCCSSGHKNGRBC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 46132:3:12::::2a2::::213121412 pos.-specific C 112118554::::a::14a75324221237 probability G 52661:2357a:::8:2:::455:43644: matrix T 111:62121::aa:::55:31:33321121 bits 2.4 * * 2.1 * * * 1.9 * * * 1.7 ****** * Relative 1.4 * ****** * Entropy 1.2 * ******* * (28.2 bits) 0.9 ** * ******* *** * 0.7 ** * ********* ***** * * 0.5 **** *********** ******* * * 0.2 ************************* **** 0.0 ------------------------------ Multilevel GAGGTCCCGGGTTCGATTCCCGGCGGGAGC consensus A CA TAGCA GC TGCTATT GC sequence T T A T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMSSGGTTCGAKYCCSSGHKNGRBC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrIII:123382-123814 - 30 2.61e-16 TAGGGTGCGG GAGGTCCCGGGTTCGAGTCCCGGCTCGCCC CACATTGTTT chrXIV:631529-632144 - 61 2.61e-16 TAGGGTGCGG GAGGTCCCGGGTTCGAGTCCCGGCTCGCCC CCATTGATTT chrXVI:860124-860752 + 31 6.05e-13 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCGC AGATTTTATT chrXIII:183796-183961 - 71 6.05e-13 . TGGGCCCCCGGTTCGATTCCGGGCTTGCGC ATATTTTTTT chrVII:845434-845984 + 30 6.05e-13 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCGC AATGTTTTTT chrVI:180680-181232 - 69 6.05e-13 GT TGGGCCCCCGGTTCGATTCCGGGCTTGCGC AGTCCTTTTT chrVIII:475505-475897 - 56 2.09e-12 TCACACGGCA AAGGTCCCGAGTTCGATCCTCGGTTGGAAC ATTTTAACAT chrXII:214703-215059 - 53 2.43e-12 TTGCAAGGAA GAGGTCATCGGTTCGATTCCGGTTGCGTCC ATTTATTTTT chrV:442989-443378 - 70 6.62e-12 G GGGATCAGCGGTTCGATCCCGCTAGAGACC ATATTTTTTT chrXII:1051916-1052202 - 63 6.62e-12 ATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGACC ATTATTTTTT chrII:197255-197833 + 43 6.62e-12 TAATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGACC ATTTTTTTGC chrIV:645008-645372 - 14 9.98e-12 TTTTGATCCG GACAACCCCGGTTCGAATCCGGGTAGGACC TTTTTTAACT chrVIII:134021-134670 + 67 9.98e-12 TTTTGATCCG GACAACCCCGGTTCGAATCCGGGTAGGACC TTTT chrII:326551-327106 - 15 9.98e-12 TTACACGGCG AAGATCCCGAGTTCGAACCTCGGTTGGATC AAACTCTTTA chrIII:168137-168530 - 19 9.98e-12 TTTTGATCCG GACAACCCCGGTTCGAATCCGGGTAGGACC TTTTTTTGAA chrVII:774122-774628 + 66 1.31e-11 TAGCATGGGA GAGGTCTCCGGTTCGATTCCGGACTCGTCC AAATT chrXIII:321006-321320 - 35 1.31e-11 TAGCATGGGA GAGGTCTCCGGTTCGATTCCGGACTCGTCC ATTTTTTATT chrXIII:195933-196290 - 8 1.31e-11 AAGCATGCGA GAGGCCCTGGGTTCAATTCCCAGCTCGCCC CTTTTTT chrX:414794-414894 + 38 1.31e-11 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGGC TAATATTTTT chrIV:1201521-1202038 + 63 1.31e-11 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGGC TAATAACA chrIX:300024-300503 - 16 1.31e-11 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGGC TATCTTTTTA chrXIII:480394-480815 - 68 1.31e-11 CAT AAGGTTAGGGGTTCGAGCCCCCTACAGGGC TTCTTTTTTT chrVI:101149-101826 + 11 1.31e-11 AAGCATGCGA GAGGCCCTGGGTTCAATTCCCAGCTCGCCC CCTTTTTTTT chrXI:517786-518278 + 48 1.31e-11 TAGCATGGGA GAGGTCTCCGGTTCGATTCCGGACTCGTCC ATTTTAAAAT chrVII:823349-823715 + 43 2.20e-11 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAATC ATTTTTTGAA chrX:378197-378297 + 67 2.20e-11 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAATC AATT chrXIII:420311-420854 - 57 2.20e-11 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAATC ATTTTTATCT chrXIII:586428-586901 - 23 2.20e-11 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAATC ATTTTTTTGA chrV:438489-438989 + 54 2.20e-11 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAATC AATTTTTTTT chrVII:779404-779938 + 36 5.28e-11 CTTCCAAGGT GGGGACACGGGTTCGATTCTCGTACCGCTC AAGATTACTT chrV:130798-131354 - 57 5.96e-11 TTTTGATCCG AACAACCCCGGTTCGAATCCGGGTAAGACC TATTTTTTTC chrXIII:572568-573260 - 20 6.78e-10 TCATAATCTG AAGGTCGAGAGTTCGAACCTCCCCTGGAGC ACATTTTTTT chrXV:438430-438982 + 52 1.35e-09 AGGATACCGA AATGTCAGGGGTTCGAGCCCCCTATGAGGA GTTCTTTATT chrXVI:768978-769468 - 35 1.35e-09 AGGATACCGA AATGTCAGGGGTTCGAGCCCCCTATGAGGA GTTCTTTACT chrX:374189-374289 - 16 1.80e-09 TTCTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAGT GCTTTGTTTC chrVII:828453-828995 - 50 1.80e-09 TTCTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAGT GCTTTTTTTG chrXIII:131623-132095 - 17 1.80e-09 TTCTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAGT GCTTTGTTTC chrXIV:104594-105115 + 43 1.98e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCGATTGGAAGC ATATTATTTT chrV:487136-487566 - 31 2.61e-09 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGGA GTATTCGTTA chrVII:541714-542142 + 13 2.61e-09 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGGA GTGTTCTTTT chrVIII:466814-467267 + 41 4.08e-09 TTGTAATGCA AAGGTCGCTAGTTCAATTCTGGCAGGTGGC ATTATACCGG chrXVI:435619-436173 - 48 4.45e-09 TGCAAATCTG TTGGTCCTTAGTTCGATCCTGAGTGCGAGC TTTCTTTTTT chrXIV:632425-632869 + 45 4.45e-09 TGTTAATCGC AAGATCGTGAGTTCAACCCTCACTGGGGTC GTTTTTTTTC chrII:642832-643240 - 22 4.45e-09 TGCAAATCTG TTGGTCCTTAGTTCGATCCTGAGTGCGAGC TTCTTTTTTT chrIV:619712-620221 - 54 5.30e-09 TACGAACCAG AAGATTCCAGGTTCAAGTCCTGGCGGGGAA GATTTTTTAT chrXI:490750-491314 + 28 5.30e-09 TACGAACCAG AAGATTCCAGGTTCAAGTCCTGGCGGGGAA GAATTTTTTT chrIV:1095092-1095652 - 49 1.66e-08 AAGATATCTG GAGGTCCTGTGTTCGATCCACAGAGTTCGC ATTTTTATTT chrIV:946149-946612 + 40 5.01e-08 ACGAAATCTT GAGATCGGGCGTTCGACTCGCCCCCGGGAG ATTTTTTTAT chrVI:167268-167714 + 54 5.01e-08 ACGAAATCTT GAGATCGGGCGTTCGACTCGCCCCCGGGAG ATATTTTTTT chrXII:426950-427491 + 3 5.75e-08 TG CCAGATCGGGGTTCAATTCCCCGTCGCGGA GAATTTTTTT chrXV:571736-572333 + 15 5.75e-08 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTTTTG chrX:355199-355299 + 64 5.75e-08 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTT chrIV:980748-981168 - 67 6.15e-08 CTTT GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC GTTTTTACCA chrII:226986-227345 + 11 6.15e-08 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC GTTATTTTTT chrIV:437549-438109 + 44 6.15e-08 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC GTCATTTTTA chrII:9372-9880 + 60 1.11e-07 TTGGACGGTT GTCCGCGCGAGTTCGAACCTCGCATCCTTC AGTATTTTTT chrII:347376-347944 + 46 1.11e-07 TTGGACGGTT GTCCGCGCGAGTTCGAACCTCGCATCCTTC AGTAATATTT chrIII:149713-150227 + 41 1.18e-07 TCATAACCCT GATGTCCTCGGATCGAAACCGAGCGGCGCT ATTAAATTTT chrVII:483288-483728 + 26 3.63e-07 TAATTATCGC CGGATCTCCGCTTCGAGACCGGGTTTGTTT TCAAATTACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMSSGGTTCGAKYCCSSGHKNGRBC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123382-123814 2.6e-16 29_[-1]_41 chrXIV:631529-632144 2.6e-16 60_[-1]_10 chrXVI:860124-860752 6e-13 30_[+1]_40 chrXIII:183796-183961 6e-13 70_[-1] chrVII:845434-845984 6e-13 29_[+1]_41 chrVI:180680-181232 6e-13 68_[-1]_2 chrVIII:475505-475897 2.1e-12 55_[-1]_15 chrXII:214703-215059 2.4e-12 52_[-1]_18 chrV:442989-443378 6.6e-12 69_[-1]_1 chrXII:1051916-1052202 6.6e-12 62_[-1]_8 chrII:197255-197833 6.6e-12 42_[+1]_28 chrIV:645008-645372 1e-11 13_[-1]_57 chrVIII:134021-134670 1e-11 66_[+1]_4 chrII:326551-327106 1e-11 14_[-1]_56 chrIII:168137-168530 1e-11 18_[-1]_52 chrVII:774122-774628 1.3e-11 65_[+1]_5 chrXIII:321006-321320 1.3e-11 34_[-1]_36 chrXIII:195933-196290 1.3e-11 7_[-1]_63 chrX:414794-414894 1.3e-11 37_[+1]_33 chrIV:1201521-1202038 1.3e-11 62_[+1]_8 chrIX:300024-300503 1.3e-11 15_[-1]_55 chrXIII:480394-480815 1.3e-11 67_[-1]_3 chrVI:101149-101826 1.3e-11 10_[+1]_60 chrXI:517786-518278 1.3e-11 47_[+1]_23 chrVII:823349-823715 2.2e-11 42_[+1]_28 chrX:378197-378297 2.2e-11 66_[+1]_4 chrXIII:420311-420854 2.2e-11 56_[-1]_14 chrXIII:586428-586901 2.2e-11 22_[-1]_48 chrV:438489-438989 2.2e-11 53_[+1]_17 chrVII:779404-779938 5.3e-11 35_[+1]_35 chrV:130798-131354 6e-11 56_[-1]_14 chrXIII:572568-573260 6.8e-10 19_[-1]_51 chrXV:438430-438982 1.4e-09 51_[+1]_19 chrXVI:768978-769468 1.4e-09 34_[-1]_36 chrX:374189-374289 1.8e-09 15_[-1]_55 chrVII:828453-828995 1.8e-09 49_[-1]_21 chrXIII:131623-132095 1.8e-09 16_[-1]_54 chrXIV:104594-105115 2e-09 42_[+1]_28 chrV:487136-487566 2.6e-09 30_[-1]_40 chrVII:541714-542142 2.6e-09 12_[+1]_58 chrVIII:466814-467267 4.1e-09 40_[+1]_30 chrXVI:435619-436173 4.5e-09 47_[-1]_23 chrXIV:632425-632869 4.5e-09 44_[+1]_26 chrII:642832-643240 4.5e-09 21_[-1]_49 chrIV:619712-620221 5.3e-09 53_[-1]_17 chrXI:490750-491314 5.3e-09 27_[+1]_43 chrIV:1095092-1095652 1.7e-08 48_[-1]_22 chrIV:946149-946612 5e-08 39_[+1]_31 chrVI:167268-167714 5e-08 53_[+1]_17 chrXII:426950-427491 5.7e-08 2_[+1]_68 chrXV:571736-572333 5.7e-08 14_[+1]_56 chrX:355199-355299 5.7e-08 63_[+1]_7 chrIV:980748-981168 6.2e-08 66_[-1]_4 chrII:226986-227345 6.2e-08 10_[+1]_60 chrIV:437549-438109 6.2e-08 43_[+1]_27 chrII:9372-9880 1.1e-07 59_[+1]_11 chrII:347376-347944 1.1e-07 45_[+1]_25 chrIII:149713-150227 1.2e-07 40_[+1]_30 chrVII:483288-483728 3.6e-07 25_[+1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMSSGGTTCGAKYCCSSGHKNGRBC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGRTCMSSGGTTCGAKYCCSSGHKNGRBC width=30 seqs=59 chrIII:123382-123814 ( 30) GAGGTCCCGGGTTCGAGTCCCGGCTCGCCC 1 chrXIV:631529-632144 ( 61) GAGGTCCCGGGTTCGAGTCCCGGCTCGCCC 1 chrXVI:860124-860752 ( 31) TGGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrXIII:183796-183961 ( 71) TGGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrVII:845434-845984 ( 30) TGGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrVI:180680-181232 ( 69) TGGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrVIII:475505-475897 ( 56) AAGGTCCCGAGTTCGATCCTCGGTTGGAAC 1 chrXII:214703-215059 ( 53) GAGGTCATCGGTTCGATTCCGGTTGCGTCC 1 chrV:442989-443378 ( 70) GGGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrXII:1051916-1052202 ( 63) GGGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrII:197255-197833 ( 43) GGGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrIV:645008-645372 ( 14) GACAACCCCGGTTCGAATCCGGGTAGGACC 1 chrVIII:134021-134670 ( 67) GACAACCCCGGTTCGAATCCGGGTAGGACC 1 chrII:326551-327106 ( 15) AAGATCCCGAGTTCGAACCTCGGTTGGATC 1 chrIII:168137-168530 ( 19) GACAACCCCGGTTCGAATCCGGGTAGGACC 1 chrVII:774122-774628 ( 66) GAGGTCTCCGGTTCGATTCCGGACTCGTCC 1 chrXIII:321006-321320 ( 35) GAGGTCTCCGGTTCGATTCCGGACTCGTCC 1 chrXIII:195933-196290 ( 8) GAGGCCCTGGGTTCAATTCCCAGCTCGCCC 1 chrX:414794-414894 ( 38) AAGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrIV:1201521-1202038 ( 63) AAGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrIX:300024-300503 ( 16) AAGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrXIII:480394-480815 ( 68) AAGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrVI:101149-101826 ( 11) GAGGCCCTGGGTTCAATTCCCAGCTCGCCC 1 chrXI:517786-518278 ( 48) GAGGTCTCCGGTTCGATTCCGGACTCGTCC 1 chrVII:823349-823715 ( 43) AACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrX:378197-378297 ( 67) AACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrXIII:420311-420854 ( 57) AACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrXIII:586428-586901 ( 23) AACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrV:438489-438989 ( 54) AACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrVII:779404-779938 ( 36) GGGGACACGGGTTCGATTCTCGTACCGCTC 1 chrV:130798-131354 ( 57) AACAACCCCGGTTCGAATCCGGGTAAGACC 1 chrXIII:572568-573260 ( 20) AAGGTCGAGAGTTCGAACCTCCCCTGGAGC 1 chrXV:438430-438982 ( 52) AATGTCAGGGGTTCGAGCCCCCTATGAGGA 1 chrXVI:768978-769468 ( 35) AATGTCAGGGGTTCGAGCCCCCTATGAGGA 1 chrX:374189-374289 ( 16) AAGATTATGGGTTCGACCCCCATCGTGAGT 1 chrVII:828453-828995 ( 50) AAGATTATGGGTTCGACCCCCATCGTGAGT 1 chrXIII:131623-132095 ( 17) AAGATTATGGGTTCGACCCCCATCGTGAGT 1 chrXIV:104594-105115 ( 43) GAGATCATCGGTTCAAATCCGATTGGAAGC 1 chrV:487136-487566 ( 31) GGAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrVII:541714-542142 ( 13) GGAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrVIII:466814-467267 ( 41) AAGGTCGCTAGTTCAATTCTGGCAGGTGGC 1 chrXVI:435619-436173 ( 48) TTGGTCCTTAGTTCGATCCTGAGTGCGAGC 1 chrXIV:632425-632869 ( 45) AAGATCGTGAGTTCAACCCTCACTGGGGTC 1 chrII:642832-643240 ( 22) TTGGTCCTTAGTTCGATCCTGAGTGCGAGC 1 chrIV:619712-620221 ( 54) AAGATTCCAGGTTCAAGTCCTGGCGGGGAA 1 chrXI:490750-491314 ( 28) AAGATTCCAGGTTCAAGTCCTGGCGGGGAA 1 chrIV:1095092-1095652 ( 49) GAGGTCCTGTGTTCGATCCACAGAGTTCGC 1 chrIV:946149-946612 ( 40) GAGATCGGGCGTTCGACTCGCCCCCGGGAG 1 chrVI:167268-167714 ( 54) GAGATCGGGCGTTCGACTCGCCCCCGGGAG 1 chrXII:426950-427491 ( 3) CCAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrXV:571736-572333 ( 15) CCAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrX:355199-355299 ( 64) CCAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrIV:980748-981168 ( 67) GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC 1 chrII:226986-227345 ( 11) GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC 1 chrIV:437549-438109 ( 44) GCCCGCGCAGGTTCGAGTCCTGCAGTTGTC 1 chrII:9372-9880 ( 60) GTCCGCGCGAGTTCGAACCTCGCATCCTTC 1 chrII:347376-347944 ( 46) GTCCGCGCGAGTTCGAACCTCGCATCCTTC 1 chrIII:149713-150227 ( 41) GATGTCCTCGGATCGAAACCGAGCGGCGCT 1 chrVII:483288-483728 ( 26) CGGATCTCCGCTTCGAGACCGGGTTTGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMSSGGTTCGAKYCCSSGHKNGRBC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.7571 E= 2.8e-211 29 -152 123 -158 108 -94 -6 -217 -185 28 169 -258 0 -120 165 -1253 -85 -94 -120 108 -1253 203 -1253 -58 -26 138 -20 -217 -417 138 48 -58 -185 100 128 -258 -36 -252 187 -417 -1253 -352 233 -1253 -417 -1253 -1253 169 -1253 -1253 -1253 171 -1253 236 -1253 -1253 -85 -1253 209 -1253 171 -1253 -1253 -1253 -85 -52 28 59 -317 118 -1253 78 -1253 236 -1253 -1253 -417 183 -252 -26 -1253 128 118 -185 -71 56 143 -1253 -258 -20 143 -26 -8 112 -1253 -8 -158 -20 106 8 -47 18 72 -36 -117 -52 172 -185 22 -20 87 -136 -185 48 106 -36 -100 190 -252 -185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMSSGGTTCGAKYCCSSGHKNGRBC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 59 E= 2.8e-211 0.372881 0.067797 0.457627 0.101695 0.644068 0.101695 0.186441 0.067797 0.084746 0.237288 0.627119 0.050847 0.305085 0.084746 0.610169 0.000000 0.169492 0.101695 0.084746 0.644068 0.000000 0.796610 0.000000 0.203390 0.254237 0.508475 0.169492 0.067797 0.016949 0.508475 0.271186 0.203390 0.084746 0.389831 0.474576 0.050847 0.237288 0.033898 0.711864 0.016949 0.000000 0.016949 0.983051 0.000000 0.016949 0.000000 0.000000 0.983051 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.169492 0.000000 0.830508 0.000000 1.000000 0.000000 0.000000 0.000000 0.169492 0.135593 0.237288 0.457627 0.033898 0.440678 0.000000 0.525424 0.000000 1.000000 0.000000 0.000000 0.016949 0.694915 0.033898 0.254237 0.000000 0.474576 0.440678 0.084746 0.186441 0.288136 0.525424 0.000000 0.050847 0.169492 0.525424 0.254237 0.288136 0.423729 0.000000 0.288136 0.101695 0.169492 0.406780 0.322034 0.220339 0.220339 0.322034 0.237288 0.135593 0.135593 0.644068 0.084746 0.355932 0.169492 0.355932 0.118644 0.084746 0.271186 0.406780 0.237288 0.152542 0.728814 0.033898 0.084746 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCMSSGGTTCGAKYCCSSGHKNGRBC MEME-1 regular expression -------------------------------------------------------------------------------- [GA]A[GC][GA]T[CT][CA][CGT][GC][GA]GTTCGA[TG][TC]C[CT][CG][GC][GT][CAT][GT][GTAC]G[AG][GCT]C -------------------------------------------------------------------------------- Time 355.55 secs. ******************************************************************************** ******************************************************************************** MOTIF DTRGYBYAGTKGKTADMRSSNBCGVYTTT MEME-2 width = 29 sites = 64 llr = 912 E-value = 7.2e-097 ******************************************************************************** -------------------------------------------------------------------------------- Motif DTRGYBYAGTKGKTADMRSSNBCGVYTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:5:::192::::26344:1212221:12 pos.-specific C ::::633::12:11:1315333623412: probability G 3:5a:4118:5a5:142534231531:22 matrix T 4a::435::93:47321:12431114856 bits 2.4 * 2.1 * * 1.9 * * 1.7 * * * Relative 1.4 * * ** * Entropy 1.2 * ** *** * (20.6 bits) 0.9 **** *** * * 0.7 **** *** * * * 0.5 ***** ******** *** ** * * 0.2 *************** **** ******** 0.0 ----------------------------- Multilevel TTGGCGTAGTGGGTAGAGCGTTCGGTTTT consensus G A TCC A T T TACAGCCCACCC CA sequence A T T G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTKGKTADMRSSNBCGVYTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrVII:115333-115725 + 15 4.02e-13 CTCATCCTTG TTAGCTCAGTTGGTAGAGCGTTCGGCTTT TAAGCGCATT chrXI:578570-579381 + 46 4.02e-13 CTCATCCTTG TTAGCTCAGTTGGTAGAGCGTTCGGCTTT TAAGCGCATT chrVII:774122-774628 + 30 2.06e-11 AATTGGGCGT GTGGCGTAGTCGGTAGCGCGCTCCCTTAG CATGGGAGAG chrXIII:321006-321320 - 72 2.06e-11 . GTGGCGTAGTCGGTAGCGCGCTCCCTTAG CATGGGAGAG chrXII:656822-657204 - 9 2.06e-11 AATTGGGCGT GTGGCGTAGTCGGTAGCGCGCTCCCTTAG CATGGGAG chrXI:517786-518278 + 12 2.06e-11 CTATGGGCGT GTGGCGTAGTCGGTAGCGCGCTCCCTTAG CATGGGAGAG chrIV:802574-803029 - 17 3.76e-10 TGTCGGTCCT ATAGTGTAGTGGTTATCACTTTCGGTTTT GATCCGGACA chrIV:645008-645372 - 50 3.76e-10 TTACGGTCCT ATAGTGTAGTGGTTATCACTTTCGGTTTT GATCCGGACA chrVIII:134021-134670 + 32 3.76e-10 TTCCGGTCCT ATAGTGTAGTGGTTATCACTTTCGGTTTT GATCCGGACA chrIII:168137-168530 - 55 3.76e-10 TCCTGGTCCT ATAGTGTAGTGGTTATCACTTTCGGTTTT GATCCGGACA chrII:350611-351063 + 46 3.76e-10 AAAGGGTTTT ATAGTGTAGTGGTTATCACTTTCGGTTTT GATCCGGACA chrX:414794-414894 + 2 2.05e-09 G TTGGCGCAATCGGTAGCGCGTATGACTCT TAATCATAAG chrIV:1201521-1202038 + 27 2.05e-09 AATAGCCTTG TTGGCGCAATCGGTAGCGCGTATGACTCT TAATCATAAG chrIX:300024-300503 - 53 2.05e-09 AATAGCCTTG TTGGCGCAATCGGTAGCGCGTATGACTCT TAATCATAAG chrV:435628-435988 - 32 2.05e-09 AAGAGCCTTG TTGGCGCAATCGGTAGCGCGTATGACTCT TAATCATAAG chrX:617721-617821 + 43 1.04e-08 CAATGGGAGT TTGGCCGAGTGGTTTAAGGCGTCAGATTT AGGTGGATTT chrXII:592334-592908 - 14 1.04e-08 CAATGGGAGT TTGGCCGAGTGGTTTAAGGCGTCAGATTT AGGTGGATTT chrII:36240-36604 + 32 1.52e-08 GTAAGCGGAT TTAGCTCAGTTGGGAGAGCGCCAGACTGA AGAAAAACTT chrXIV:374660-375105 + 43 1.52e-08 ATAAGCGGAC TTAGCTCAGTTGGGAGAGCGCCAGACTGA AGAAAAACTT chrXVI:622342-622857 - 48 1.52e-08 ATATGCGGAT TTAGCTCAGTTGGGAGAGCGCCAGACTGA AGAAAAAACT chrXIV:602107-602552 + 39 2.18e-08 CAATGGTCTC TTGGCCCAGTTGGTTAAGGCACCGTGCTA ATAACGCGGG chrIX:183286-183714 - 29 2.18e-08 TCCTGGTCTC TTGGCCCAGTTGGTTAAGGCACCGTGCTA ATAACGCGGG chrII:197255-197833 + 6 2.18e-08 GTCTC TTGGCCCAGTTGGTTAAGGCACCGTGCTA ATAACGCGGG chrVII:823349-823715 + 6 4.89e-08 GTTTC GTGGTCTAGTCGGTTATGGCATCTGCTTA ACACGCAGAA chrX:378197-378297 + 30 4.89e-08 AATAGGTTTC GTGGTCTAGTCGGTTATGGCATCTGCTTA ACACGCAGAA chrXIII:586428-586901 - 61 4.89e-08 CTATGGTTTC GTGGTCTAGTCGGTTATGGCATCTGCTTA ACACGCAGAA chrV:438489-438989 + 17 4.89e-08 ATTAGGTTTC GTGGTCTAGTCGGTTATGGCATCTGCTTA ACACGCAGAA chrXIV:104594-105115 + 7 5.47e-08 GCTTCT ATGGCCAAGTTGGTAAGGCGCCACACTAG TAATGTGGAG chrIV:568671-569289 + 40 6.81e-08 TTCTTCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGT CGCGTGCCAG chrXI:513188-513591 - 30 6.81e-08 ACGTTCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGT CGCGTGCCAG chrVII:531399-531827 + 53 6.81e-08 TACTTCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGT CGCGTGCCAG chrX:355199-355299 + 29 6.81e-08 TTCTTCCGTG ATAGTTTAATGGTCAGAATGGGCGCTTGT CGCGTGCCAG chrIV:1175594-1176097 + 40 7.58e-08 CAAAGCTTCA GTAGCTCAGTAGGAAGAGCGTCAGTCTCA TAATCTGAAG chrXIII:572568-573260 - 57 7.58e-08 GATAGCTTCA GTAGCTCAGTAGGAAGAGCGTCAGTCTCA TAATCTGAAG chrII:326551-327106 - 53 8.44e-08 TCCGGGTCCA ATGGTCCAGTGGTTCAAGACGTCGCCTTT ACACGGCGAA chrXII:167788-168223 - 36 8.44e-08 ATATGGCAAC TTGGCCGAGTGGTTAAGGCGAAAGATTAG AAATCTTTTG chrIV:1305411-1305896 + 33 8.44e-08 TTAAGGCAAC TTGGCCGAGTGGTTAAGGCGAAAGATTAG AAATCTTTTG chrVII:779404-779938 + 1 1.42e-07 . TTAGTGTAGTGGTTATCATCCCACCCTTC CAAGGTGGGG chrII:9372-9880 + 13 1.73e-07 TCGTGGAGGG TTGGCCGAGTGGTCTAAGGCGGCAGACTT AAGATCTGTT chrVIII:466814-467267 + 6 4.48e-07 CCTCC TTAGCTTAGTGGTAGAGCGTTGCACTTGT AATGCAAAGG chrX:291063-291163 - 69 4.48e-07 GCA ATAGTCTAGCTGGAACGATTGCCGCTTTT GTCGTAGCTG chrVII:661524-661949 + 69 4.48e-07 ATTTGCCTCC TTAGCTTAGTGGTAGAGCGTTGCACTTGT AAT chrXV:594230-594640 - 6 7.61e-07 AAACGCGCAA GTGGTTCAGTGGTTAGAATTTATGCTTCC CAAGC chrX:354026-354126 + 46 9.81e-07 ATCACTCTCG GTAGCCAAGTTGGTTTAAGGCGCAAGACT GTAATTTACC chrV:487136-487566 - 67 9.81e-07 CCGAT ATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrX:115805-115905 - 12 9.81e-07 ATAATCCGAT ATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrXIII:837694-838210 + 32 9.81e-07 TTGACTCTCG GTAGCCAAGTTGGTTTAAGGCGCAAGACT GTAATTTACC chrIX:370227-370635 + 42 9.81e-07 ATAATCCGAT ATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrVI:167268-167714 + 2 9.81e-07 G GTAGCCAAGTTGGTTTAAGGCGCAAGACT GTAATTTACC chrXIV:632425-632869 + 8 9.81e-07 TGACTCC ATGGCCAAGTTGGTTAAGGCGTGCGACTG TTAATCGCAA chrXIII:290475-291161 + 39 9.81e-07 ATAATCCGAT ATAGTGTAACGGCTATCACATCACGCTTT CACCGTGGAG chrXIII:306085-307187 - 46 1.26e-06 ATTCCGGTTT TTGGCTTGTTTGTTTCGGGCTCCGCCTCA TCGTCTTAGC chrX:374189-374289 - 52 1.26e-06 AGTAGCTCGC GTGGCGTAATGGCAACGCGTCTGACTTCT AATCAGAAGA chrXIII:131623-132095 - 53 1.26e-06 TTTAGCTCGC GTGGCGTAATGGCAACGCGTCTGACTTCT AATCAGAAGA chrXI:83977-84435 + 58 1.87e-06 GTATGGAGGG TTGGCCGAGTGGTCTAATGCGGCAGACTT AAGATCTGTT chrX:360169-360269 - 53 2.02e-06 AAATCTCCAC TTGGGTCGGTTGGTACAGCCTGTGTGTTT TACCGTTGAT chrII:477051-477787 + 70 2.36e-06 TTAACTATAT ATAGCTAAATTGGTTCCATCACCTTCTTT TC chrI:138986-139359 + 36 3.96e-06 GTACGGGCGT GTGGTCTAGTGGTATGATTCTCGCTTTGG GCGACTTCCT chrXII:1011643-1012790 - 34 4.90e-06 CTATTCCTCA TTAGCGCGGCTCGTACCACGCGCTTTTTT CTTCTCGTTT chrVII:798576-800183 + 61 4.90e-06 TCTAACGAAG GTGTCTTGGTGGGTGGTTCTTCCGGTTCT GCCTTCACTG chrX:517666-517766 - 22 6.02e-06 GTTAAGCGCC GTGGCGCAGTGGAAGCGCGCAGGGCTCAT AACCCTGATG chrIII:149713-150227 + 6 6.02e-06 GCGCC GTGGCGCAGTGGAAGCGCGCAGGGCTCAT AACCCTGATG chrVIII:62609-62910 + 52 6.45e-06 ATATGCCATC TTAGTATAGTGGTTAGTACACATCGTTGT GGCCGATGAA chrXIV:662905-664065 + 13 9.58e-06 GCGGGCTCCA TTGGCGCTGGGGCCCTCACGGGCGCTTTG TTCAAGTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTKGKTADMRSSNBCGVYTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:115333-115725 4e-13 14_[+2]_57 chrXI:578570-579381 4e-13 45_[+2]_26 chrVII:774122-774628 2.1e-11 29_[+2]_42 chrXIII:321006-321320 2.1e-11 71_[-2] chrXII:656822-657204 2.1e-11 8_[-2]_63 chrXI:517786-518278 2.1e-11 11_[+2]_60 chrIV:802574-803029 3.8e-10 16_[-2]_55 chrIV:645008-645372 3.8e-10 49_[-2]_22 chrVIII:134021-134670 3.8e-10 31_[+2]_40 chrIII:168137-168530 3.8e-10 54_[-2]_17 chrII:350611-351063 3.8e-10 45_[+2]_26 chrX:414794-414894 2e-09 1_[+2]_70 chrIV:1201521-1202038 2e-09 26_[+2]_45 chrIX:300024-300503 2e-09 52_[-2]_19 chrV:435628-435988 2e-09 31_[-2]_40 chrX:617721-617821 1e-08 42_[+2]_29 chrXII:592334-592908 1e-08 13_[-2]_58 chrII:36240-36604 1.5e-08 31_[+2]_40 chrXIV:374660-375105 1.5e-08 42_[+2]_29 chrXVI:622342-622857 1.5e-08 47_[-2]_24 chrXIV:602107-602552 2.2e-08 38_[+2]_33 chrIX:183286-183714 2.2e-08 28_[-2]_43 chrII:197255-197833 2.2e-08 5_[+2]_66 chrVII:823349-823715 4.9e-08 5_[+2]_66 chrX:378197-378297 4.9e-08 29_[+2]_42 chrXIII:586428-586901 4.9e-08 60_[-2]_11 chrV:438489-438989 4.9e-08 16_[+2]_55 chrXIV:104594-105115 5.5e-08 6_[+2]_65 chrIV:568671-569289 6.8e-08 39_[+2]_32 chrXI:513188-513591 6.8e-08 29_[-2]_42 chrVII:531399-531827 6.8e-08 52_[+2]_19 chrX:355199-355299 6.8e-08 28_[+2]_43 chrIV:1175594-1176097 7.6e-08 39_[+2]_32 chrXIII:572568-573260 7.6e-08 56_[-2]_15 chrII:326551-327106 8.4e-08 52_[-2]_19 chrXII:167788-168223 8.4e-08 35_[-2]_36 chrIV:1305411-1305896 8.4e-08 32_[+2]_39 chrVII:779404-779938 1.4e-07 [+2]_71 chrII:9372-9880 1.7e-07 12_[+2]_59 chrVIII:466814-467267 4.5e-07 5_[+2]_66 chrX:291063-291163 4.5e-07 68_[-2]_3 chrVII:661524-661949 4.5e-07 68_[+2]_3 chrXV:594230-594640 7.6e-07 5_[-2]_66 chrX:354026-354126 9.8e-07 45_[+2]_26 chrV:487136-487566 9.8e-07 66_[-2]_5 chrX:115805-115905 9.8e-07 11_[-2]_60 chrXIII:837694-838210 9.8e-07 31_[+2]_40 chrIX:370227-370635 9.8e-07 41_[+2]_30 chrVI:167268-167714 9.8e-07 1_[+2]_70 chrXIV:632425-632869 9.8e-07 7_[+2]_64 chrXIII:290475-291161 9.8e-07 38_[+2]_33 chrXIII:306085-307187 1.3e-06 45_[-2]_26 chrX:374189-374289 1.3e-06 51_[-2]_20 chrXIII:131623-132095 1.3e-06 52_[-2]_19 chrXI:83977-84435 1.9e-06 57_[+2]_14 chrX:360169-360269 2e-06 52_[-2]_19 chrII:477051-477787 2.4e-06 69_[+2]_2 chrI:138986-139359 4e-06 35_[+2]_36 chrXII:1011643-1012790 4.9e-06 33_[-2]_38 chrVII:798576-800183 4.9e-06 60_[+2]_11 chrX:517666-517766 6e-06 21_[-2]_50 chrIII:149713-150227 6e-06 5_[+2]_66 chrVIII:62609-62910 6.4e-06 51_[+2]_20 chrXIV:662905-664065 9.6e-06 12_[+2]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTKGKTADMRSSNBCGVYTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DTRGYBYAGTKGKTADMRSSNBCGVYTTT width=29 seqs=64 chrVII:115333-115725 ( 15) TTAGCTCAGTTGGTAGAGCGTTCGGCTTT 1 chrXI:578570-579381 ( 46) TTAGCTCAGTTGGTAGAGCGTTCGGCTTT 1 chrVII:774122-774628 ( 30) GTGGCGTAGTCGGTAGCGCGCTCCCTTAG 1 chrXIII:321006-321320 ( 72) GTGGCGTAGTCGGTAGCGCGCTCCCTTAG 1 chrXII:656822-657204 ( 9) GTGGCGTAGTCGGTAGCGCGCTCCCTTAG 1 chrXI:517786-518278 ( 12) GTGGCGTAGTCGGTAGCGCGCTCCCTTAG 1 chrIV:802574-803029 ( 17) ATAGTGTAGTGGTTATCACTTTCGGTTTT 1 chrIV:645008-645372 ( 50) ATAGTGTAGTGGTTATCACTTTCGGTTTT 1 chrVIII:134021-134670 ( 32) ATAGTGTAGTGGTTATCACTTTCGGTTTT 1 chrIII:168137-168530 ( 55) ATAGTGTAGTGGTTATCACTTTCGGTTTT 1 chrII:350611-351063 ( 46) ATAGTGTAGTGGTTATCACTTTCGGTTTT 1 chrX:414794-414894 ( 2) TTGGCGCAATCGGTAGCGCGTATGACTCT 1 chrIV:1201521-1202038 ( 27) TTGGCGCAATCGGTAGCGCGTATGACTCT 1 chrIX:300024-300503 ( 53) TTGGCGCAATCGGTAGCGCGTATGACTCT 1 chrV:435628-435988 ( 32) TTGGCGCAATCGGTAGCGCGTATGACTCT 1 chrX:617721-617821 ( 43) TTGGCCGAGTGGTTTAAGGCGTCAGATTT 1 chrXII:592334-592908 ( 14) TTGGCCGAGTGGTTTAAGGCGTCAGATTT 1 chrII:36240-36604 ( 32) TTAGCTCAGTTGGGAGAGCGCCAGACTGA 1 chrXIV:374660-375105 ( 43) TTAGCTCAGTTGGGAGAGCGCCAGACTGA 1 chrXVI:622342-622857 ( 48) TTAGCTCAGTTGGGAGAGCGCCAGACTGA 1 chrXIV:602107-602552 ( 39) TTGGCCCAGTTGGTTAAGGCACCGTGCTA 1 chrIX:183286-183714 ( 29) TTGGCCCAGTTGGTTAAGGCACCGTGCTA 1 chrII:197255-197833 ( 6) TTGGCCCAGTTGGTTAAGGCACCGTGCTA 1 chrVII:823349-823715 ( 6) GTGGTCTAGTCGGTTATGGCATCTGCTTA 1 chrX:378197-378297 ( 30) GTGGTCTAGTCGGTTATGGCATCTGCTTA 1 chrXIII:586428-586901 ( 61) GTGGTCTAGTCGGTTATGGCATCTGCTTA 1 chrV:438489-438989 ( 17) GTGGTCTAGTCGGTTATGGCATCTGCTTA 1 chrXIV:104594-105115 ( 7) ATGGCCAAGTTGGTAAGGCGCCACACTAG 1 chrIV:568671-569289 ( 40) ATAGTTTAATGGTCAGAATGGGCGCTTGT 1 chrXI:513188-513591 ( 30) ATAGTTTAATGGTCAGAATGGGCGCTTGT 1 chrVII:531399-531827 ( 53) ATAGTTTAATGGTCAGAATGGGCGCTTGT 1 chrX:355199-355299 ( 29) ATAGTTTAATGGTCAGAATGGGCGCTTGT 1 chrIV:1175594-1176097 ( 40) GTAGCTCAGTAGGAAGAGCGTCAGTCTCA 1 chrXIII:572568-573260 ( 57) GTAGCTCAGTAGGAAGAGCGTCAGTCTCA 1 chrII:326551-327106 ( 53) ATGGTCCAGTGGTTCAAGACGTCGCCTTT 1 chrXII:167788-168223 ( 36) TTGGCCGAGTGGTTAAGGCGAAAGATTAG 1 chrIV:1305411-1305896 ( 33) TTGGCCGAGTGGTTAAGGCGAAAGATTAG 1 chrVII:779404-779938 ( 1) TTAGTGTAGTGGTTATCATCCCACCCTTC 1 chrII:9372-9880 ( 13) TTGGCCGAGTGGTCTAAGGCGGCAGACTT 1 chrVIII:466814-467267 ( 6) TTAGCTTAGTGGTAGAGCGTTGCACTTGT 1 chrX:291063-291163 ( 69) ATAGTCTAGCTGGAACGATTGCCGCTTTT 1 chrVII:661524-661949 ( 69) TTAGCTTAGTGGTAGAGCGTTGCACTTGT 1 chrXV:594230-594640 ( 6) GTGGTTCAGTGGTTAGAATTTATGCTTCC 1 chrX:354026-354126 ( 46) GTAGCCAAGTTGGTTTAAGGCGCAAGACT 1 chrV:487136-487566 ( 67) ATAGTGTAACGGCTATCACATCACGCTTT 1 chrX:115805-115905 ( 12) ATAGTGTAACGGCTATCACATCACGCTTT 1 chrXIII:837694-838210 ( 32) GTAGCCAAGTTGGTTTAAGGCGCAAGACT 1 chrIX:370227-370635 ( 42) ATAGTGTAACGGCTATCACATCACGCTTT 1 chrVI:167268-167714 ( 2) GTAGCCAAGTTGGTTTAAGGCGCAAGACT 1 chrXIV:632425-632869 ( 8) ATGGCCAAGTTGGTTAAGGCGTGCGACTG 1 chrXIII:290475-291161 ( 39) ATAGTGTAACGGCTATCACATCACGCTTT 1 chrXIII:306085-307187 ( 46) TTGGCTTGTTTGTTTCGGGCTCCGCCTCA 1 chrX:374189-374289 ( 52) GTGGCGTAATGGCAACGCGTCTGACTTCT 1 chrXIII:131623-132095 ( 53) GTGGCGTAATGGCAACGCGTCTGACTTCT 1 chrXI:83977-84435 ( 58) TTGGCCGAGTGGTCTAATGCGGCAGACTT 1 chrX:360169-360269 ( 53) TTGGGTCGGTTGGTACAGCCTGTGTGTTT 1 chrII:477051-477787 ( 70) ATAGCTAAATTGGTTCCATCACCTTCTTT 1 chrI:138986-139359 ( 36) GTGGTCTAGTGGTATGATTCTCGCTTTGG 1 chrXII:1011643-1012790 ( 34) TTAGCGCGGCTCGTACCACGCGCTTTTTT 1 chrVII:798576-800183 ( 61) GTGTCTTGGTGGGTGGTTCTTCCGGTTCT 1 chrX:517666-517766 ( 22) GTGGCGCAGTGGAAGCGCGCAGGGCTCAT 1 chrIII:149713-150227 ( 6) GTGGCGCAGTGGAAGCGCGCAGGGCTCAT 1 chrVIII:62609-62910 ( 52) TTAGTATAGTGGTTAGTACACATCGTTGT 1 chrXIV:662905-664065 ( 13) TTGGCGCTGGGGCCCTCACGGGCGCTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTKGKTADMRSSNBCGVYTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 8.54689 E= 7.2e-097 -12 -1264 68 41 -1264 -1264 -1264 171 62 -1264 145 -1264 -1264 -1264 234 -428 -1264 168 -364 24 -428 75 94 -12 -170 75 -106 67 160 -1264 -164 -428 -38 -1264 194 -428 -1264 -106 -364 155 -328 -6 136 -12 -1264 -364 234 -1264 -328 -83 136 24 -96 -83 -206 117 100 -264 -132 -12 -12 -47 88 -48 41 75 -18 -170 24 -106 136 -270 -428 136 82 -112 -196 68 111 -70 -70 36 -6 30 -129 61 36 11 -59 161 -106 -148 -83 6 145 -170 -59 68 82 -112 -196 94 -83 52 -270 -64 -1264 144 -112 17 -18 62 -59 -264 -32 100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTKGKTADMRSSNBCGVYTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 64 E= 7.2e-097 0.281250 0.000000 0.312500 0.406250 0.000000 0.000000 0.000000 1.000000 0.468750 0.000000 0.531250 0.000000 0.000000 0.000000 0.984375 0.015625 0.000000 0.625000 0.015625 0.359375 0.015625 0.328125 0.375000 0.281250 0.093750 0.328125 0.093750 0.484375 0.921875 0.000000 0.062500 0.015625 0.234375 0.000000 0.750000 0.015625 0.000000 0.093750 0.015625 0.890625 0.031250 0.187500 0.500000 0.281250 0.000000 0.015625 0.984375 0.000000 0.031250 0.109375 0.500000 0.359375 0.156250 0.109375 0.046875 0.687500 0.609375 0.031250 0.078125 0.281250 0.281250 0.140625 0.359375 0.218750 0.406250 0.328125 0.171875 0.093750 0.359375 0.093750 0.500000 0.046875 0.015625 0.500000 0.343750 0.140625 0.078125 0.312500 0.421875 0.187500 0.187500 0.250000 0.187500 0.375000 0.125000 0.296875 0.250000 0.328125 0.203125 0.593750 0.093750 0.109375 0.171875 0.203125 0.531250 0.093750 0.203125 0.312500 0.343750 0.140625 0.078125 0.375000 0.109375 0.437500 0.046875 0.125000 0.000000 0.828125 0.140625 0.218750 0.171875 0.468750 0.203125 0.031250 0.156250 0.609375 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRGYBYAGTKGKTADMRSSNBCGVYTTT MEME-2 regular expression -------------------------------------------------------------------------------- [TGA]T[GA]G[CT][GCT][TC]A[GA]T[GT]G[GT]T[AT][GAT][AC][GA][CG][GC][TC][TCG][CA][GC][GCA][TC]T[TC][TA] -------------------------------------------------------------------------------- Time 676.12 secs. ******************************************************************************** ******************************************************************************** MOTIF KAAAAAAAAAAAAAW MEME-3 width = 15 sites = 79 llr = 800 E-value = 7.2e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif KAAAAAAAAAAAAAW MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2686a978a78a993 pos.-specific C 1:2:::::::::::1 probability G 42:2:12::12:::2 matrix T 31:1:::2:3::115 bits 2.4 2.1 1.9 1.7 * Relative 1.4 ** * *** Entropy 1.2 ** ** **** (14.6 bits) 0.9 * ***** **** 0.7 * ********** 0.5 ************* 0.2 *************** 0.0 --------------- Multilevel GAAAAAAAAAAAAAT consensus TG G G TG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KAAAAAAAAAAAAAW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrIV:43288-44553 + 17 6.44e-08 GCACGCAACT GAAAAAAAAAAAAAG AAAAATTTTT chrXIV:560285-560862 + 67 6.44e-08 ATAACTTTTA TAAAAAAAAAAAAAT CACACTTAAA chrXV:384644-385043 - 14 1.70e-07 ACCACGGCGC TGAAAAAAAAAAAAT CGGAACCGGA chrXV:677684-679106 + 47 1.70e-07 AAGGAGAATT TGAAAAAAAAAAAAT TTTTCATTTA chrVII:736204-736936 + 33 1.70e-07 TATAAATTTA TAAAAAAAAAAAAAA AGTTACTTCC chrIV:83444-83852 - 28 2.34e-07 AAACAATGTG GAAAAAGAAAAAAAA TTAAACTTGC chrVIII:375022-375855 + 15 3.65e-07 AAGTTGAAGA GGAGAAAAAAAAAAA GAGAGAGCCG chrVII:609263-610165 + 56 4.51e-07 ACAGACCGAG GGAGAAAAAAAAAAG GAACTAAAAA chrXII:875171-876242 - 43 5.50e-07 AATAATATCC AAAGAAAAAAAAAAT CGCATTTAGC chrXI:140647-142797 + 4 6.64e-07 AAT TAAGAAGAAAAAAAT GAACCGACCC chrII:477051-477787 + 2 6.64e-07 T CAAGAAAAAAAAAAT TCTTCTTCGA chrV:225448-225718 + 19 7.86e-07 TCTTTTTCCA GAAAAAGAAAGAAAA AAGCCGGCGG chrVII:706919-707173 + 45 7.86e-07 TAATGAGGCC CAAAAAAAAAAAAAG AACATCTTCA chrXI:517786-518278 - 86 7.86e-07 . AAAAAAAAAAGAAAT TTTAAAATGG chrIII:82057-82682 + 45 9.30e-07 AACTATTTTT TGAAAAAAATAAAAT GGTAATTTAT chrVI:31038-31455 + 57 1.41e-06 GTGGCGTCCT GAAAAAAAAAGAAAC GTCTCAGAAC chrII:373196-373690 - 63 1.59e-06 CAGGTAGGGA AAAAAAGAAAAAAAA ACCTTTCTTC chrXV:79786-80133 - 65 1.59e-06 TGACTGCTGA GACAAAAAAAGAAAG CAACTCCATG chrII:680247-682771 + 68 1.85e-06 AACAGAAAGC TAAAAAAAAGAAAAT AGAAAACAAC chrXIII:321006-321320 + 20 2.75e-06 TTAGTTAGCC AAAAAAATAAAAAAT GGACGAGTCC chrV:550870-551573 - 44 2.75e-06 CGTTCTGCTT AAAAAAATAAAAAAT GATGTCTTCA chrVII:939021-939786 + 80 2.75e-06 AATCAAATTT GTAGAAAAATAAAAT AGAAAA chrII:642832-643240 + 5 2.75e-06 GGAT TGCAAAAAAAAAAAG AAGCTCGCAC chrVI:226383-227323 - 21 3.88e-06 AAAGAGACAG GAAAAAGAAAAAATT ATGGTGCGGC chrXV:1054017-1054467 + 69 3.88e-06 CTCATTTGAT TAAAAAATATAAAAT GAATTGCGAA chrVII:397918-398281 + 57 4.40e-06 GTGGGCTTCC GTAGAAGAAAAAAAG CTGTTGAGCG chrVII:648739-649407 + 60 4.90e-06 AAAGATCTTC GGATAAAAATAAAAA GAAGGCGATG chrIV:1156329-1156589 + 47 4.90e-06 GTTGTTCCTC CTAAAAAAAAAAAAG ATTTCCTACC chrXVI:900803-902278 + 83 4.90e-06 AGTGAATGGT AACGAAAAAAAAAAA TCT chrIX:420724-421208 + 14 5.43e-06 AAATTCCGCT GGAAAAAAAAAATAA TAATGCAAAA chrX:396413-396513 + 75 6.00e-06 CAACGTAAGA GAAGAAATATAAAAA AGAAATGCGC chrIX:68267-68463 - 63 6.72e-06 CGACACGGAG CACAAAAAAAGAAAA ACCATACATC chrXII:1028220-1028572 - 82 6.72e-06 TGAA GGCAAGAAAAAAAAT TATGACCCAT chrV:438489-438989 - 85 6.72e-06 T TTCGAAAAAAAAAAT TGATTTCGCC chrIX:96765-97671 - 30 6.72e-06 ATTTCCTCGG TAAGAAATATAAAAT ATAAATGAAT chrXVI:860124-860752 - 63 7.45e-06 TTTAGAAGGG AGCAAAAAATAAAAT CTGCGCAAGC chrIV:1095092-1095652 + 34 7.45e-06 TGCGTCACTG GGAAAAAATAAAAAT GCGAACTCTG chrXVI:810590-811283 + 27 8.28e-06 CAGAAATAAA TAAATAAAAAAAAAT CTAGTATCGC chrXIV:632425-632869 - 76 8.28e-06 AGACTATCTG AAATAAGAAAAAAAA CGACCCCAGT chrXII:793712-797500 - 8 9.06e-06 TGCTGCTTCC GAATAAATATAAAAT CAAGAAA chrIV:667737-668196 + 76 9.91e-06 AACAATAGAG GAGAAAAAATAAAAA TGGTCTCTAG chrXIV:576681-577533 + 28 9.91e-06 TTTCATGCCT TTCAAAAAATAAAAT AACGATCATT chrXII:348031-348829 + 34 9.91e-06 AAACATTTTT GACAAGAAATAAAAT TCAGATACCG chrXIII:797650-798233 - 75 9.91e-06 TATAATGGAA GAAAAAAAATGAATT ATCATATGTG chrXII:366038-366584 - 81 1.09e-05 CTCGA TGATAAAAAAAAAAC GAAATAAATC chrV:42100-42639 - 34 1.09e-05 CACAGTAGTG TGATAAATAAAAAAT TTTGCCAAGA chrIV:1301535-1302869 - 64 1.20e-05 GCTGCAACAG TAAAAAAAAAGAATA TAACGTGAAG chrXII:809149-815762 - 46 1.20e-05 ACAAAGATTG AGCAAAGAAAGAAAT ACGACGCTCA chrXI:551873-552686 + 11 1.33e-05 TTACTCACGT TAAGAGAAAAGAAAA AGAGGATTCG chrXII:65336-65680 - 74 1.33e-05 ATTTCGGTAC CAAAAAAAAAAATAG CCGCCCAGAG chrVII:779404-779938 - 82 1.45e-05 AGGA GAAAAAGTATGAAAA TTAAAAAAGT chrXIII:158448-159000 + 24 1.45e-05 CTTTTACTTA TAAGAAAAATAATAT ACGTATATAT chrXIII:540258-540771 - 1 1.58e-05 CATGACTCAA CAAAAAAATAAAAAT chrXV:796448-798833 + 73 1.72e-05 CTTTATCAAC CAAAAATAAAAAAAT GCTTCAATCC chrIX:426731-427874 - 55 1.72e-05 CTGAAAACCA GTGAAAAAAAAAAAG GCAAAAAGTT chrXV:281977-282539 - 26 1.72e-05 TTTTGGTGGT GGACAAAAAAGAAAT GCGCAAGCCC chrXIII:183796-183961 + 54 1.72e-05 TATTCTTGGT GAATTAAAAAAAAAT ATGCGCAAGC chrII:591364-591811 + 71 1.88e-05 CATTTGGACC TTCAAAGAATAAAAT CGAAGTTATA chrXIV:104594-105115 - 73 1.88e-05 GTTTACCGTA GAATAAAAATAATAT GCTTCCAATC chrVIII:475505-475897 + 29 1.88e-05 GTCTGGCTAT GACAAACAAAAAAAT CGATGTTAAA chrXIII:504924-505263 + 53 2.03e-05 GTCAGTTGAG TAAGAAATATGAAAA ACATTGGAAA chrVIII:466814-467267 - 80 2.21e-05 CAAAGG GAAAAAAAATAATAC CGGTATAATG chrXII:214703-215059 + 34 2.21e-05 ATAAAGGAGA ATAAAAGTAAAAAAT AAATGGACGC chrXII:47460-49197 - 29 2.41e-05 AAACCGCTGC TGAAAAGAAGGAAAG ATTGACCAAG chrX:223706-223806 - 79 2.41e-05 TAAAAAG TAAAAAGATAAAAAA GACTCATATG chrIII:177027-178850 - 83 2.62e-05 TAA GAATTAAAAAAAAAA ACTTTTGGAT chrXIII:499035-501206 - 21 2.62e-05 TGACAATCGA GTAGAAGAAGAAAAG TGGATTTGTG chrIII:227802-231377 + 66 2.62e-05 TCTTTGGAAA GAAGAAGAATAAATG GTGAACTCGC chrII:444370-445002 - 71 2.62e-05 CGAAAGAGTA AAATAGAAAAAAAAA CACATACATA chrXVI:587154-587546 + 68 2.84e-05 TCCTTTGAGG ATAGAAAAATGAAAA AAAGAAATTT chrVII:401381-401613 + 24 3.07e-05 TCTCCGAAAT GAAGAAAAAAAATTT TCTTCACGGA chrXI:490750-491314 - 61 3.31e-05 TAAGAAAATT ATAAAAGTAAAAAAA TTCTTCCCCG chrXIII:159201-160209 - 59 3.31e-05 TGGGAAATGG AGAGAGAAAAGAAAA GAGTATGAAA chrXV:663220-664127 - 84 3.31e-05 GA GAAAAATAATGAAAA AAAAAGTTTT chrII:236535-237374 - 14 3.56e-05 AAAATGCCAC TAATAAAAAGAAAAC ATGACTAAAT chrVII:122046-123211 + 8 5.49e-05 ATCAAGG TAAAAAGTATGAAAC CGAGAATTAT chrXV:383013-383485 - 70 6.29e-05 GCAGGCACAT TACTAAAAAGGAAAG AGTCAAGAGT chrX:414794-414894 - 71 7.17e-05 TGAATAAGTG GGCAAGAAAAAAATA TTAGCCCTGT chrIV:410183-410823 - 3 8.15e-05 CTCGGCACCG CGGAAAGTAAAAAAT AA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KAAAAAAAAAAAAAW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:43288-44553 6.4e-08 16_[+3]_69 chrXIV:560285-560862 6.4e-08 66_[+3]_19 chrXV:384644-385043 1.7e-07 13_[-3]_72 chrXV:677684-679106 1.7e-07 46_[+3]_39 chrVII:736204-736936 1.7e-07 32_[+3]_53 chrIV:83444-83852 2.3e-07 27_[-3]_58 chrVIII:375022-375855 3.7e-07 14_[+3]_71 chrVII:609263-610165 4.5e-07 55_[+3]_30 chrXII:875171-876242 5.5e-07 42_[-3]_43 chrXI:140647-142797 6.6e-07 3_[+3]_82 chrII:477051-477787 6.6e-07 1_[+3]_84 chrV:225448-225718 7.9e-07 18_[+3]_67 chrVII:706919-707173 7.9e-07 44_[+3]_41 chrXI:517786-518278 7.9e-07 85_[-3] chrIII:82057-82682 9.3e-07 44_[+3]_41 chrVI:31038-31455 1.4e-06 56_[+3]_29 chrII:373196-373690 1.6e-06 62_[-3]_23 chrXV:79786-80133 1.6e-06 64_[-3]_21 chrII:680247-682771 1.9e-06 67_[+3]_18 chrXIII:321006-321320 2.7e-06 19_[+3]_66 chrV:550870-551573 2.7e-06 43_[-3]_42 chrVII:939021-939786 2.7e-06 79_[+3]_6 chrII:642832-643240 2.7e-06 4_[+3]_81 chrVI:226383-227323 3.9e-06 20_[-3]_65 chrXV:1054017-1054467 3.9e-06 68_[+3]_17 chrVII:397918-398281 4.4e-06 56_[+3]_29 chrVII:648739-649407 4.9e-06 59_[+3]_26 chrIV:1156329-1156589 4.9e-06 46_[+3]_39 chrXVI:900803-902278 4.9e-06 82_[+3]_3 chrIX:420724-421208 5.4e-06 13_[+3]_72 chrX:396413-396513 6e-06 74_[+3]_11 chrIX:68267-68463 6.7e-06 62_[-3]_23 chrXII:1028220-1028572 6.7e-06 81_[-3]_4 chrV:438489-438989 6.7e-06 84_[-3]_1 chrIX:96765-97671 6.7e-06 29_[-3]_56 chrXVI:860124-860752 7.5e-06 62_[-3]_23 chrIV:1095092-1095652 7.5e-06 33_[+3]_52 chrXVI:810590-811283 8.3e-06 26_[+3]_59 chrXIV:632425-632869 8.3e-06 75_[-3]_10 chrXII:793712-797500 9.1e-06 7_[-3]_78 chrIV:667737-668196 9.9e-06 75_[+3]_10 chrXIV:576681-577533 9.9e-06 27_[+3]_58 chrXII:348031-348829 9.9e-06 33_[+3]_52 chrXIII:797650-798233 9.9e-06 74_[-3]_11 chrXII:366038-366584 1.1e-05 80_[-3]_5 chrV:42100-42639 1.1e-05 33_[-3]_52 chrIV:1301535-1302869 1.2e-05 63_[-3]_22 chrXII:809149-815762 1.2e-05 45_[-3]_40 chrXI:551873-552686 1.3e-05 10_[+3]_75 chrXII:65336-65680 1.3e-05 73_[-3]_12 chrVII:779404-779938 1.5e-05 81_[-3]_4 chrXIII:158448-159000 1.5e-05 23_[+3]_62 chrXIII:540258-540771 1.6e-05 [-3]_85 chrXV:796448-798833 1.7e-05 72_[+3]_13 chrIX:426731-427874 1.7e-05 54_[-3]_31 chrXV:281977-282539 1.7e-05 25_[-3]_60 chrXIII:183796-183961 1.7e-05 53_[+3]_32 chrII:591364-591811 1.9e-05 70_[+3]_15 chrXIV:104594-105115 1.9e-05 72_[-3]_13 chrVIII:475505-475897 1.9e-05 28_[+3]_57 chrXIII:504924-505263 2e-05 52_[+3]_33 chrVIII:466814-467267 2.2e-05 79_[-3]_6 chrXII:214703-215059 2.2e-05 33_[+3]_52 chrXII:47460-49197 2.4e-05 28_[-3]_57 chrX:223706-223806 2.4e-05 78_[-3]_7 chrIII:177027-178850 2.6e-05 82_[-3]_3 chrXIII:499035-501206 2.6e-05 20_[-3]_65 chrIII:227802-231377 2.6e-05 65_[+3]_20 chrII:444370-445002 2.6e-05 70_[-3]_15 chrXVI:587154-587546 2.8e-05 67_[+3]_18 chrVII:401381-401613 3.1e-05 23_[+3]_62 chrXI:490750-491314 3.3e-05 60_[-3]_25 chrXIII:159201-160209 3.3e-05 58_[-3]_27 chrXV:663220-664127 3.3e-05 83_[-3]_2 chrII:236535-237374 3.6e-05 13_[-3]_72 chrVII:122046-123211 5.5e-05 7_[+3]_78 chrXV:383013-383485 6.3e-05 69_[-3]_16 chrX:414794-414894 7.2e-05 70_[-3]_15 chrIV:410183-410823 8.2e-05 2_[-3]_83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KAAAAAAAAAAAAAW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KAAAAAAAAAAAAAW width=15 seqs=79 chrIV:43288-44553 ( 17) GAAAAAAAAAAAAAG 1 chrXIV:560285-560862 ( 67) TAAAAAAAAAAAAAT 1 chrXV:384644-385043 ( 14) TGAAAAAAAAAAAAT 1 chrXV:677684-679106 ( 47) TGAAAAAAAAAAAAT 1 chrVII:736204-736936 ( 33) TAAAAAAAAAAAAAA 1 chrIV:83444-83852 ( 28) GAAAAAGAAAAAAAA 1 chrVIII:375022-375855 ( 15) GGAGAAAAAAAAAAA 1 chrVII:609263-610165 ( 56) GGAGAAAAAAAAAAG 1 chrXII:875171-876242 ( 43) AAAGAAAAAAAAAAT 1 chrXI:140647-142797 ( 4) TAAGAAGAAAAAAAT 1 chrII:477051-477787 ( 2) CAAGAAAAAAAAAAT 1 chrV:225448-225718 ( 19) GAAAAAGAAAGAAAA 1 chrVII:706919-707173 ( 45) CAAAAAAAAAAAAAG 1 chrXI:517786-518278 ( 86) AAAAAAAAAAGAAAT 1 chrIII:82057-82682 ( 45) TGAAAAAAATAAAAT 1 chrVI:31038-31455 ( 57) GAAAAAAAAAGAAAC 1 chrII:373196-373690 ( 63) AAAAAAGAAAAAAAA 1 chrXV:79786-80133 ( 65) GACAAAAAAAGAAAG 1 chrII:680247-682771 ( 68) TAAAAAAAAGAAAAT 1 chrXIII:321006-321320 ( 20) AAAAAAATAAAAAAT 1 chrV:550870-551573 ( 44) AAAAAAATAAAAAAT 1 chrVII:939021-939786 ( 80) GTAGAAAAATAAAAT 1 chrII:642832-643240 ( 5) TGCAAAAAAAAAAAG 1 chrVI:226383-227323 ( 21) GAAAAAGAAAAAATT 1 chrXV:1054017-1054467 ( 69) TAAAAAATATAAAAT 1 chrVII:397918-398281 ( 57) GTAGAAGAAAAAAAG 1 chrVII:648739-649407 ( 60) GGATAAAAATAAAAA 1 chrIV:1156329-1156589 ( 47) CTAAAAAAAAAAAAG 1 chrXVI:900803-902278 ( 83) AACGAAAAAAAAAAA 1 chrIX:420724-421208 ( 14) GGAAAAAAAAAATAA 1 chrX:396413-396513 ( 75) GAAGAAATATAAAAA 1 chrIX:68267-68463 ( 63) CACAAAAAAAGAAAA 1 chrXII:1028220-1028572 ( 82) GGCAAGAAAAAAAAT 1 chrV:438489-438989 ( 85) TTCGAAAAAAAAAAT 1 chrIX:96765-97671 ( 30) TAAGAAATATAAAAT 1 chrXVI:860124-860752 ( 63) AGCAAAAAATAAAAT 1 chrIV:1095092-1095652 ( 34) GGAAAAAATAAAAAT 1 chrXVI:810590-811283 ( 27) TAAATAAAAAAAAAT 1 chrXIV:632425-632869 ( 76) AAATAAGAAAAAAAA 1 chrXII:793712-797500 ( 8) GAATAAATATAAAAT 1 chrIV:667737-668196 ( 76) GAGAAAAAATAAAAA 1 chrXIV:576681-577533 ( 28) TTCAAAAAATAAAAT 1 chrXII:348031-348829 ( 34) GACAAGAAATAAAAT 1 chrXIII:797650-798233 ( 75) GAAAAAAAATGAATT 1 chrXII:366038-366584 ( 81) TGATAAAAAAAAAAC 1 chrV:42100-42639 ( 34) TGATAAATAAAAAAT 1 chrIV:1301535-1302869 ( 64) TAAAAAAAAAGAATA 1 chrXII:809149-815762 ( 46) AGCAAAGAAAGAAAT 1 chrXI:551873-552686 ( 11) TAAGAGAAAAGAAAA 1 chrXII:65336-65680 ( 74) CAAAAAAAAAAATAG 1 chrVII:779404-779938 ( 82) GAAAAAGTATGAAAA 1 chrXIII:158448-159000 ( 24) TAAGAAAAATAATAT 1 chrXIII:540258-540771 ( 1) CAAAAAAATAAAAAT 1 chrXV:796448-798833 ( 73) CAAAAATAAAAAAAT 1 chrIX:426731-427874 ( 55) GTGAAAAAAAAAAAG 1 chrXV:281977-282539 ( 26) GGACAAAAAAGAAAT 1 chrXIII:183796-183961 ( 54) GAATTAAAAAAAAAT 1 chrII:591364-591811 ( 71) TTCAAAGAATAAAAT 1 chrXIV:104594-105115 ( 73) GAATAAAAATAATAT 1 chrVIII:475505-475897 ( 29) GACAAACAAAAAAAT 1 chrXIII:504924-505263 ( 53) TAAGAAATATGAAAA 1 chrVIII:466814-467267 ( 80) GAAAAAAAATAATAC 1 chrXII:214703-215059 ( 34) ATAAAAGTAAAAAAT 1 chrXII:47460-49197 ( 29) TGAAAAGAAGGAAAG 1 chrX:223706-223806 ( 79) TAAAAAGATAAAAAA 1 chrIII:177027-178850 ( 83) GAATTAAAAAAAAAA 1 chrXIII:499035-501206 ( 21) GTAGAAGAAGAAAAG 1 chrIII:227802-231377 ( 66) GAAGAAGAATAAATG 1 chrII:444370-445002 ( 71) AAATAGAAAAAAAAA 1 chrXVI:587154-587546 ( 68) ATAGAAAAATGAAAA 1 chrVII:401381-401613 ( 24) GAAGAAAAAAAATTT 1 chrXI:490750-491314 ( 61) ATAAAAGTAAAAAAA 1 chrXIII:159201-160209 ( 59) AGAGAGAAAAGAAAA 1 chrXV:663220-664127 ( 84) GAAAAATAATGAAAA 1 chrII:236535-237374 ( 14) TAATAAAAAGAAAAC 1 chrVII:122046-123211 ( 8) TAAAAAGTATGAAAC 1 chrXV:383013-383485 ( 70) TACTAAAAAGGAAAG 1 chrX:414794-414894 ( 71) GGCAAGAAAAAAATA 1 chrIV:410183-410823 ( 3) CGGAAAGTAAAAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KAAAAAAAAAAAAAW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 10.2824 E= 7.2e-030 -78 -95 105 5 102 -1295 30 -113 136 -14 -236 -1295 99 -394 30 -113 166 -1295 -1295 -300 160 -1295 -136 -1295 127 -394 22 -359 145 -1295 -1295 -89 166 -1295 -1295 -300 111 -1295 -162 -13 134 -1295 22 -1295 171 -1295 -1295 -1295 160 -1295 -1295 -201 160 -1295 -1295 -201 -1 -162 -24 62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KAAAAAAAAAAAAAW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 79 E= 7.2e-030 0.177215 0.101266 0.405063 0.316456 0.620253 0.000000 0.240506 0.139241 0.784810 0.177215 0.037975 0.000000 0.607595 0.012658 0.240506 0.139241 0.962025 0.000000 0.000000 0.037975 0.924051 0.000000 0.075949 0.000000 0.734177 0.012658 0.227848 0.025316 0.835443 0.000000 0.000000 0.164557 0.962025 0.000000 0.000000 0.037975 0.658228 0.000000 0.063291 0.278481 0.772152 0.000000 0.227848 0.000000 1.000000 0.000000 0.000000 0.000000 0.924051 0.000000 0.000000 0.075949 0.924051 0.000000 0.000000 0.075949 0.303797 0.063291 0.164557 0.468354 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KAAAAAAAAAAAAAW MEME-3 regular expression -------------------------------------------------------------------------------- [GT][AG]A[AG]AA[AG]AA[AT][AG]AAA[TA] -------------------------------------------------------------------------------- Time 988.76 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:237712-238162 5.68e-01 100 chrVIII:119611-121711 3.38e-02 100 chrXV:28749-30839 9.14e-01 100 chrVI:220027-221568 7.41e-01 100 chrXI:302704-303231 9.90e-03 6_[+2(3.16e-05)]_65 chrI:71631-73711 9.08e-01 100 chrIV:1162454-1164790 1.61e-01 100 chrXVI:818611-821229 5.01e-01 100 chrXIII:701852-703296 9.95e-01 100 chrVII:364883-366740 9.99e-01 100 chrVII:254139-254714 6.63e-01 100 chrXI:430606-431533 5.05e-02 18_[-2(9.63e-05)]_53 chrIV:446555-446849 4.86e-01 100 chrII:642832-643240 1.17e-09 4_[+3(2.75e-06)]_2_[-1(4.45e-09)]_\ 49 chrXVI:453500-453732 4.17e-01 100 chrIV:722369-722830 9.22e-01 100 chrXI:617414-619218 7.35e-01 100 chrIX:127455-130196 6.19e-01 100 chrXIV:560285-560862 5.23e-04 66_[+3(6.44e-08)]_19 chrIV:589905-591294 4.59e-01 100 chrXII:459606-460739 7.73e-01 100 chrIX:96765-97671 9.02e-03 29_[-3(6.72e-06)]_56 chrII:136040-136299 1.50e-02 37_[-1(5.07e-05)]_33 chrXI:517786-518278 9.15e-19 11_[+2(2.06e-11)]_7_[+1(1.31e-11)]_\ 8_[-3(7.86e-07)] chrXVI:209773-210512 3.91e-01 100 chrVII:255173-255683 5.62e-01 100 chrXV:779690-781066 8.51e-02 100 chrXII:198338-199811 4.31e-01 100 chrVII:736204-736936 1.83e-03 32_[+3(1.70e-07)]_53 chrXV:877401-878012 6.05e-01 100 chrXIII:170175-171299 5.74e-02 100 chrIX:380171-380873 5.40e-01 100 chrXVI:587154-587546 4.66e-02 67_[+3(2.84e-05)]_18 chrII:300062-300284 2.07e-01 100 chrI:142137-143718 7.14e-01 100 chrXV:722830-725757 6.07e-01 100 chrIV:520681-521157 5.92e-01 100 chrXIII:797650-798233 2.81e-02 74_[-3(9.91e-06)]_11 chrVI:101149-101826 2.73e-08 10_[+1(1.31e-11)]_60 chrXII:780521-781853 9.53e-01 100 chrVIII:74732-76535 6.12e-01 100 chrX:519400-519500 2.90e-01 100 chrVII:56365-59190 9.52e-01 100 chrVIII:237139-238128 5.48e-01 100 chrXII:919374-923706 9.88e-01 100 chrXIII:290475-291161 2.17e-03 38_[+2(9.81e-07)]_33 chrXIV:217311-218236 3.39e-01 100 chrXIV:632425-632869 6.00e-11 7_[+2(9.81e-07)]_8_[+1(4.45e-09)]_1_\ [-3(8.28e-06)]_10 chrVII:205293-206382 3.28e-01 100 chrXVI:745431-746830 9.84e-01 100 chrXIII:131623-132095 2.72e-09 16_[-1(1.80e-09)]_6_[-2(1.26e-06)]_\ 19 chrIV:1239349-1240258 1.17e-01 100 chrXV:638974-639396 9.91e-01 100 chrXIII:267635-269892 4.95e-01 100 chrVII:766077-766673 8.17e-01 100 chrXI:612480-613589 2.38e-01 100 chrX:355199-355299 2.19e-08 28_[+2(6.81e-08)]_6_[+1(5.75e-08)]_\ 7 chrVI:31674-32258 8.93e-01 100 chrXVI:370993-373288 9.34e-01 100 chrV:438489-438989 1.96e-14 16_[+2(4.89e-08)]_8_[+1(2.20e-11)]_\ 1_[-3(6.72e-06)]_1 chrXI:322435-322964 7.23e-01 100 chrXII:855572-857668 3.39e-01 100 chrXII:86933-87220 4.91e-01 100 chrXI:21321-21818 5.03e-02 100 chrIX:420724-421208 2.82e-02 13_[+3(5.43e-06)]_72 chrIV:541197-542040 9.01e-01 100 chrVI:180680-181232 2.84e-09 68_[-1(6.05e-13)]_2 chrXIII:372178-372649 7.01e-02 100 chrXIV:88877-89973 3.34e-01 100 chrXIII:119285-119524 3.03e-01 100 chrXII:568068-570112 6.31e-01 100 chrVII:828453-828995 1.01e-06 49_[-1(1.80e-09)]_21 chrXI:98901-100096 5.88e-01 100 chrXI:558631-559500 8.25e-01 100 chrXII:1028220-1028572 4.32e-03 81_[-3(6.72e-06)]_4 chrII:415593-415815 4.31e-01 100 chrV:42100-42639 2.59e-02 33_[-3(1.09e-05)]_52 chrXII:447840-448846 7.98e-01 100 chrIV:600692-602369 2.61e-01 100 chrXII:214703-215059 2.96e-10 33_[+3(2.21e-05)]_4_[-1(2.43e-12)]_\ 18 chrVI:167268-167714 1.09e-07 1_[+2(9.81e-07)]_23_[+1(5.01e-08)]_\ 17 chrXVI:531444-532031 8.82e-01 100 chrV:363629-364475 2.20e-01 100 chrXIV:628130-629053 3.68e-01 100 chrVII:611846-613734 6.35e-01 100 chrXII:424065-424779 9.12e-01 100 chrXVI:451568-453249 8.86e-01 100 chrXII:930635-931876 1.74e-01 100 chrXV:968083-968689 6.80e-01 100 chrVII:878527-879016 5.05e-03 59_[-2(3.16e-05)]_12 chrVI:31038-31455 2.78e-03 56_[+3(1.41e-06)]_29 chrX:745016-745116 8.64e-01 100 chrXV:1054017-1054467 1.02e-02 68_[+3(3.88e-06)]_17 chrVII:609263-610165 3.80e-03 55_[+3(4.51e-07)]_30 chrXV:159132-160793 5.54e-01 100 chrVII:483288-483728 9.44e-05 25_[+1(3.63e-07)]_45 chrXVI:338732-339364 2.21e-01 100 chrXII:546353-547605 1.75e-01 100 chrXVI:794948-796213 6.89e-01 100 chrVIII:122239-122616 3.48e-01 100 chrV:264302-265512 7.87e-01 100 chrXII:65336-65680 2.55e-02 73_[-3(1.33e-05)]_12 chrXVI:622342-622857 3.56e-05 47_[-2(1.52e-08)]_24 chrXIII:19001-20601 5.96e-01 100 chrXII:282730-284082 8.77e-01 100 chrII:350611-351063 5.75e-07 45_[+2(3.76e-10)]_26 chrVII:850947-851957 9.61e-02 100 chrXVI:900803-902278 3.05e-03 82_[+3(4.90e-06)]_3 chrXIII:67496-68085 2.88e-01 100 chrXV:79786-80133 8.02e-03 64_[-3(1.59e-06)]_21 chrXIII:158448-159000 1.80e-02 23_[+3(1.45e-05)]_62 chrIV:1161510-1162208 5.50e-02 100 chrV:241961-242585 5.11e-01 100 chrV:441807-442666 4.64e-01 100 chrIV:1507107-1507741 6.48e-01 100 chrXVI:927744-928120 5.17e-01 100 chrXV:520581-520941 1.28e-01 100 chrXII:932090-932481 8.29e-01 100 chrIV:1095092-1095652 6.31e-07 33_[+3(7.45e-06)]_[-1(1.66e-08)]_22 chrXV:407517-408267 2.07e-01 100 chrVII:440254-441049 2.36e-01 100 chrXIII:572568-573260 2.31e-10 19_[-1(6.78e-10)]_7_[-2(7.58e-08)]_\ 15 chrVII:968842-969160 6.14e-01 100 chrIV:134323-135039 1.61e-02 55_[-2(1.40e-05)]_16 chrII:544548-544812 4.06e-01 100 chrVII:227274-228394 3.32e-01 100 chrXV:1003901-1007034 2.49e-01 100 chrXIII:752981-754289 7.05e-01 100 chrXV:882686-884174 6.81e-01 100 chrX:381308-381408 4.01e-01 100 chrVII:345617-346749 1.31e-01 100 chrX:223706-223806 7.06e-02 78_[-3(2.41e-05)]_7 chrXII:592334-592908 1.22e-04 13_[-2(1.04e-08)]_58 chrXII:201597-202729 9.36e-01 100 chrXVI:768978-769468 3.31e-06 34_[-1(1.35e-09)]_36 chrXIII:586428-586901 4.89e-12 22_[-1(2.20e-11)]_8_[-2(4.89e-08)]_\ 11 chrXIV:374660-375105 1.33e-04 42_[+2(1.52e-08)]_29 chrIV:555303-556667 3.98e-01 100 chrIV:410183-410823 6.78e-02 2_[-3(8.15e-05)]_83 chrXI:333627-335027 5.79e-01 100 chrXI:202263-203290 1.20e-01 100 chrIX:197333-197792 5.43e-01 100 chrXI:431865-433088 1.74e-01 100 chrXV:677684-679106 9.16e-04 46_[+3(1.70e-07)]_39 chrX:196720-196820 2.00e-01 100 chrXIII:557459-558327 9.46e-01 100 chrVII:88126-88632 6.05e-01 100 chrIV:437549-438109 6.10e-06 43_[+1(6.15e-08)]_27 chrX:651889-651989 8.60e-01 100 chrVII:738883-739622 8.55e-01 100 chrXIII:873846-874509 2.37e-01 100 chrVII:661524-661949 2.18e-04 68_[+2(4.48e-07)]_3 chrXIII:420311-420854 4.29e-09 56_[-1(2.20e-11)]_14 chrXII:1017710-1019521 3.62e-01 100 chrVII:920486-921998 8.46e-01 100 chrIX:177565-178109 6.12e-01 100 chrI:138986-139359 2.96e-03 35_[+2(3.96e-06)]_36 chrII:197255-197833 1.55e-13 5_[+2(2.18e-08)]_8_[+1(6.62e-12)]_\ 28 chrXVI:435619-436173 1.78e-08 47_[-1(4.45e-09)]_23 chrXII:373706-374033 7.75e-01 100 chrII:392555-397986 7.53e-01 100 chrXIII:236257-236438 6.25e-01 100 chrV:151768-153213 4.55e-01 100 chrVI:53089-54846 7.39e-02 100 chrIV:758782-759643 5.51e-01 100 chrXII:261308-264618 7.16e-01 100 chrIV:340177-341613 1.07e-01 100 chrVII:798576-800183 7.80e-03 60_[+2(4.90e-06)]_11 chrX:291063-291163 1.37e-04 68_[-2(4.48e-07)]_3 chrXIV:783523-784323 1.86e-01 100 chrVIII:451129-453143 3.49e-01 100 chrXV:87359-89068 3.44e-01 100 chrXI:163314-164554 9.19e-01 100 chrXIV:61534-64550 5.95e-02 55_[+2(3.92e-05)]_16 chrVII:779404-779938 2.54e-13 [+2(1.42e-07)]_6_[+1(5.28e-11)]_16_\ [-3(1.45e-05)]_4 chrXIV:505608-507526 6.07e-01 100 chrX:136084-136184 8.29e-01 100 chrXIV:331248-332382 4.00e-01 100 chrX:56086-56186 4.77e-01 100 chrV:117211-118295 3.95e-01 100 chrXII:818514-820445 4.22e-01 100 chrXVI:821606-822321 7.22e-01 100 chrIX:325755-326225 3.60e-02 100 chrVII:786811-788684 2.82e-01 100 chrXVI:810590-811283 6.52e-03 26_[+3(8.28e-06)]_59 chrXV:663220-664127 9.39e-02 83_[-3(3.31e-05)]_2 chrX:525956-526056 2.73e-01 100 chrXIV:771657-772404 5.18e-01 100 chrVIII:554086-554739 7.86e-01 100 chrII:36240-36604 1.24e-04 31_[+2(1.52e-08)]_40 chrXII:348031-348829 2.61e-02 33_[+3(9.91e-06)]_52 chrVII:516205-519002 3.49e-01 100 chrXII:712893-713509 7.35e-01 100 chrXI:382212-382473 4.36e-01 100 chrXVI:108550-114801 5.68e-01 100 chrI:169413-170941 9.79e-01 100 chrXIV:662905-664065 5.02e-04 12_[+2(9.58e-06)]_59 chrIV:599743-600297 9.63e-02 100 chrIV:1269890-1271093 2.79e-01 100 chrVIII:492073-493668 5.19e-01 100 chrXIV:715468-716841 6.17e-01 100 chrXIII:747715-748276 3.81e-01 100 chrXII:1051916-1052202 7.31e-09 62_[-1(6.62e-12)]_8 chrXIV:392336-392729 8.41e-01 100 chrVI:210486-211116 9.07e-01 100 chrII:580178-581201 3.31e-01 100 chrIX:370227-370635 1.47e-04 41_[+2(9.81e-07)]_30 chrVIII:388641-389000 4.71e-01 100 chrII:238477-238648 8.50e-01 100 chrXIV:493694-495624 5.34e-02 26_[+2(9.63e-05)]_45 chrXVI:519961-520512 5.83e-02 100 chrXII:737759-738157 3.34e-01 100 chrIV:835771-836233 8.78e-01 100 chrXII:166754-167398 1.25e-01 100 chrXV:168004-168450 5.26e-01 100 chrXII:783879-784508 6.83e-01 100 chrXII:734579-734979 4.93e-01 100 chrXVI:376817-377363 4.70e-01 100 chrXI:312408-314021 1.54e-01 100 chrXV:161179-161968 2.65e-01 100 chrXIII:480394-480815 4.35e-08 67_[-1(1.31e-11)]_3 chrX:396413-396513 1.84e-02 74_[+3(6.00e-06)]_11 chrIV:117197-118224 5.08e-01 100 chrXV:988328-989564 9.77e-01 100 chrIV:834985-835546 7.33e-01 100 chrXIII:650751-653009 6.45e-01 100 chrV:53533-53933 3.20e-01 100 chrIV:13-287 7.46e-02 100 chrV:288121-288723 2.20e-01 100 chrXII:844194-845682 8.99e-01 100 chrVI:43374-44394 4.89e-01 100 chrXV:889873-891615 3.01e-01 100 chrVI:106611-107026 6.51e-01 100 chrXV:758855-759977 8.99e-01 100 chrXI:518762-521622 3.09e-01 100 chrIV:392541-392862 7.55e-01 100 chrII:611969-614999 7.29e-01 100 chrII:444370-445002 1.67e-02 70_[-3(2.62e-05)]_15 chrXIII:288073-290038 1.69e-01 100 chrXIII:837694-838210 3.19e-03 31_[+2(9.81e-07)]_40 chrXI:46718-46992 6.75e-01 100 chrXI:162187-162720 4.43e-01 100 chrIV:1150349-1150542 6.45e-01 100 chrV:138454-141400 6.75e-01 100 chrXV:347443-347813 9.50e-01 100 chrV:249788-250670 9.25e-01 100 chrXVI:731647-732292 6.24e-01 100 chrIII:227802-231377 3.80e-02 65_[+3(2.62e-05)]_20 chrXV:424063-424705 4.34e-01 100 chrX:73429-73529 9.24e-01 100 chrIV:1305411-1305896 3.73e-05 32_[+2(8.44e-08)]_39 chrXI:100340-106911 4.35e-01 100 chrXII:196895-197557 3.78e-02 3_[+2(7.59e-05)]_68 chrXII:809149-815762 3.20e-02 45_[-3(1.20e-05)]_40 chrXII:704270-704948 5.95e-01 100 chrVII:771926-772456 6.84e-03 100 chrXVI:701842-702354 7.11e-01 100 chrIII:295318-296040 4.94e-01 100 chrX:617721-617821 4.11e-05 42_[+2(1.04e-08)]_29 chrII:477051-477787 1.90e-06 1_[+3(6.64e-07)]_53_[+2(2.36e-06)]_\ 2 chrXV:383013-383485 5.69e-02 69_[-3(6.29e-05)]_16 chrIV:43288-44553 7.82e-04 16_[+3(6.44e-08)]_69 chrXV:979781-981424 1.63e-01 100 chrXV:1027746-1029414 9.01e-01 100 chrXII:875171-876242 3.22e-04 1_[+3(1.45e-05)]_26_[-3(5.50e-07)]_\ 43 chrIII:78279-78868 7.27e-01 100 chrXVI:585626-586881 3.32e-01 100 chrXIII:378755-379603 6.43e-01 100 chrXIV:253172-254194 7.39e-01 100 chrXVI:640091-641625 4.34e-01 100 chrXI:67801-69494 2.62e-01 100 chrIV:1268564-1269480 2.21e-01 100 chrXIII:145859-147725 3.20e-01 100 chrVII:702852-704523 7.23e-01 100 chrXVI:55794-56417 5.28e-01 100 chrV:442989-443378 1.26e-08 69_[-1(6.62e-12)]_1 chrIV:975880-977200 6.59e-01 100 chrXIII:671285-674799 9.79e-01 100 chrXIII:159201-160209 5.43e-02 58_[-3(3.31e-05)]_27 chrIII:168137-168530 5.53e-14 18_[-1(9.98e-12)]_6_[-2(3.76e-10)]_\ 17 chrXIII:878653-880892 4.39e-01 100 chrXIV:576681-577533 4.07e-02 27_[+3(9.91e-06)]_58 chrXII:167788-168223 3.73e-05 35_[-2(8.44e-08)]_36 chrVII:411844-412593 5.35e-01 100 chrXII:253106-255259 7.00e-01 100 chrV:469110-469680 5.25e-01 100 chrVII:845434-845984 1.86e-09 29_[+1(6.05e-13)]_41 chrX:374189-374289 1.42e-08 15_[-1(1.80e-09)]_6_[-2(1.26e-06)]_\ 20 chrV:435628-435988 8.77e-06 31_[-2(2.05e-09)]_40 chrXI:578570-579381 7.04e-09 45_[+2(4.02e-13)]_26 chrVII:405465-406009 2.21e-01 100 chrXIV:240760-242037 4.10e-01 100 chrX:120317-120417 8.31e-01 100 chrIV:76907-77765 1.85e-01 100 chrII:88923-90485 1.21e-01 100 chrXII:673040-673275 2.58e-01 100 chrXII:366038-366584 3.64e-03 80_[-3(1.09e-05)]_5 chrXV:514252-514734 4.96e-01 100 chrXV:348795-349346 1.38e-01 100 chrXIV:626064-627162 3.70e-01 100 chrIII:149713-150227 2.44e-07 5_[+2(6.02e-06)]_6_[+1(1.18e-07)]_\ 30 chrX:378197-378297 2.54e-12 29_[+2(4.89e-08)]_8_[+1(2.20e-11)]_\ 4 chrXII:731160-732316 6.37e-01 100 chrVII:794073-794557 8.67e-01 100 chrXII:242186-243550 7.08e-01 100 chrX:156122-156222 7.70e-01 100 chrXI:490750-491314 6.73e-07 27_[+1(5.30e-09)]_3_[-3(3.31e-05)]_\ 25 chrVIII:505847-506158 9.97e-01 100 chrXIII:162938-164385 6.87e-01 100 chrVIII:147611-148785 6.05e-01 100 chrXII:1011643-1012790 2.18e-04 33_[-2(4.90e-06)]_38 chrIV:619712-620221 5.83e-06 53_[-1(5.30e-09)]_17 chrXVI:75004-76747 6.16e-03 63_[+2(6.90e-06)]_8 chrXII:903184-904835 2.80e-01 100 chrXIV:289525-292397 9.93e-01 100 chrXIII:504924-505263 7.97e-03 52_[+3(2.03e-05)]_33 chrX:651205-651305 7.67e-01 100 chrIX:300024-300503 6.37e-14 15_[-1(1.31e-11)]_7_[-2(2.05e-09)]_\ 19 chrII:256165-257928 9.06e-01 100 chrV:460507-462167 5.33e-01 100 chrII:301088-301792 8.91e-01 100 chrIV:578889-580734 3.47e-01 100 chrII:504537-505284 6.92e-01 100 chrXIII:556992-557292 5.71e-01 100 chrII:87870-88617 4.29e-01 100 chrVII:647991-648502 8.37e-01 100 chrIV:1461505-1461835 4.88e-02 100 chrIX:386566-387097 1.56e-01 100 chrXIV:720048-723227 3.98e-01 100 chrXIV:108435-109289 2.95e-01 100 chrXIV:442776-444753 5.16e-01 100 chrXIII:759771-763184 9.84e-02 19_[+3(9.23e-05)]_66 chrIV:946149-946612 2.01e-04 39_[+1(5.01e-08)]_31 chrVII:1056764-1058764 7.08e-01 100 chrXV:384644-385043 3.67e-04 13_[-3(1.70e-07)]_72 chrVIII:115295-116433 5.31e-01 100 chrXIII:302744-303384 2.98e-03 5_[+1(1.57e-05)]_65 chrXV:778133-779481 9.28e-01 100 chrXI:258049-259995 3.85e-01 100 chrVII:21089-22363 9.67e-01 100 chrXIII:183796-183961 1.08e-10 53_[+3(1.72e-05)]_2_[-1(6.05e-13)] chrIX:99651-100002 4.95e-01 100 chrII:326551-327106 9.21e-12 14_[-1(9.98e-12)]_8_[-2(8.44e-08)]_\ 19 chrXII:1002248-1003319 3.42e-01 100 chrXI:457897-459046 5.97e-01 100 chrIX:183286-183714 8.90e-05 28_[-2(2.18e-08)]_43 chrXVI:645301-646166 9.51e-01 100 chrVIII:148987-149253 1.10e-01 100 chrXI:231014-231647 3.56e-01 100 chrXIII:892905-895137 6.24e-01 100 chrVII:370780-371513 1.48e-01 100 chrVII:599306-601470 5.27e-01 100 chrXI:379690-380005 8.65e-01 100 chrVII:531399-531827 2.04e-05 52_[+2(6.81e-08)]_19 chrXV:444591-446258 3.84e-01 100 chrI:151317-151847 1.37e-01 100 chrXV:80361-81532 9.41e-01 100 chrVIII:145655-146463 6.50e-01 100 chrII:373929-375832 4.72e-01 100 chrXIV:631529-632144 1.47e-13 60_[-1(2.61e-16)]_10 chrIV:1354282-1355576 2.81e-01 100 chrXV:738542-739160 8.71e-01 100 chrIV:355003-356981 2.77e-01 100 chrV:122104-123026 1.83e-01 100 chrII:347376-347944 1.02e-05 45_[+1(1.11e-07)]_25 chrXII:656822-657204 2.46e-08 8_[-2(2.06e-11)]_63 chrXVI:775631-776094 9.21e-01 100 chrXVI:67042-67493 6.46e-01 100 chrXIV:302604-303809 3.34e-01 100 chrXV:977073-978411 7.05e-01 100 chrXV:234071-234795 3.11e-01 100 chrVII:479133-482990 2.68e-01 100 chrVIII:296772-297267 9.66e-01 100 chrVIII:34376-36188 8.99e-02 100 chrXII:543996-545850 6.36e-02 25_[-1(6.33e-05)]_45 chrXIV:417581-418489 9.64e-01 100 chrVIII:475505-475897 3.02e-10 28_[+3(1.88e-05)]_12_[-1(2.09e-12)]_\ 15 chrXIV:518815-519128 3.05e-01 100 chrVIII:487400-488802 9.28e-01 100 chrX:360169-360269 7.85e-03 52_[-2(2.02e-06)]_19 chrXII:625171-625753 7.34e-01 100 chrIV:1201521-1202038 2.21e-13 26_[+2(2.05e-09)]_7_[+1(1.31e-11)]_\ 8 chrIX:23462-25251 7.22e-01 100 chrVIII:504121-505651 7.82e-01 100 chrXV:853935-854809 5.28e-01 100 chrIX:190825-192452 7.24e-01 100 chrXV:908418-909127 3.00e-01 100 chrVII:397918-398281 1.39e-02 56_[+3(4.40e-06)]_29 chrXII:515296-516996 9.22e-02 100 chrIV:381710-384836 1.09e-01 10_[+2(8.77e-05)]_61 chrX:414794-414894 5.50e-15 1_[+2(2.05e-09)]_7_[+1(1.31e-11)]_3_\ [-3(7.17e-05)]_15 chrV:305814-307496 7.08e-02 13_[-2(6.24e-05)]_58 chrVII:122046-123211 9.29e-02 7_[+3(5.49e-05)]_78 chrXVI:732469-732675 9.18e-01 100 chrIX:254245-254545 5.21e-01 100 chrIV:1156329-1156589 1.75e-02 46_[+3(4.90e-06)]_39 chrXVI:699506-700663 4.53e-02 100 chrXIV:234229-235575 5.19e-01 100 chrXII:514100-514838 7.65e-01 100 chrXII:628178-628735 2.39e-01 100 chrXIII:540258-540771 4.15e-03 [-3(1.58e-05)]_85 chrIII:82057-82682 7.64e-03 44_[+3(9.30e-07)]_41 chrII:226986-227345 3.29e-04 10_[+1(6.15e-08)]_60 chrXV:109505-111208 8.37e-01 100 chrXIII:499035-501206 8.37e-02 20_[-3(2.62e-05)]_65 chrIV:1175594-1176097 2.28e-04 39_[+2(7.58e-08)]_32 chrXV:925161-925428 1.33e-01 100 chrXII:281927-282472 1.40e-01 100 chrXIV:87975-88716 5.48e-02 100 chrXVI:302506-302873 7.61e-01 100 chrVI:226383-227323 1.13e-02 20_[-3(3.88e-06)]_65 chrXIV:707765-708622 7.87e-01 100 chrXI:83977-84435 8.88e-04 57_[+2(1.87e-06)]_14 chrVIII:466814-467267 6.65e-11 5_[+2(4.48e-07)]_6_[+1(4.08e-09)]_9_\ [-3(2.21e-05)]_6 chrVII:806028-807797 1.38e-01 27_[+2(6.89e-05)]_44 chrII:592271-593240 1.25e-01 70_[+2(9.63e-05)]_1 chrVII:323441-324136 4.92e-01 100 chrXIII:759011-759572 6.96e-01 100 chrVII:115333-115725 1.23e-08 14_[+2(4.02e-13)]_57 chrIII:29610-31110 9.41e-01 100 chrXV:438430-438982 3.52e-06 51_[+1(1.35e-09)]_19 chrIV:489682-491221 6.67e-01 100 chrXII:805418-807112 1.46e-01 100 chrI:190186-190818 6.60e-01 100 chrVII:970724-973986 6.50e-01 100 chrIV:308037-310138 8.96e-01 100 chrVIII:134021-134670 5.58e-14 31_[+2(3.76e-10)]_6_[+1(9.98e-12)]_\ 4 chrIV:218312-218722 2.50e-01 100 chrXI:819-1047 4.84e-01 100 chrXII:522301-523804 1.46e-01 100 chrV:266214-268252 3.78e-01 100 chrVII:401381-401613 6.13e-02 23_[+3(3.07e-05)]_62 chrV:302772-303415 2.27e-01 100 chrVII:23875-25857 9.88e-01 100 chrXIII:195933-196290 3.70e-08 7_[-1(1.31e-11)]_63 chrXI:551873-552686 1.81e-02 10_[+3(1.33e-05)]_75 chrIV:992699-993208 9.75e-01 100 chrIV:758454-758625 1.45e-01 100 chrXII:374215-374730 5.12e-01 100 chrXVI:860124-860752 2.15e-11 30_[+1(6.05e-13)]_2_[-3(7.45e-06)]_\ 23 chrII:373196-373690 3.14e-03 62_[-3(1.59e-06)]_23 chrXIV:776603-777238 4.57e-01 100 chrVIII:381227-383312 8.45e-01 100 chrXV:281977-282539 4.61e-02 25_[-3(1.72e-05)]_60 chrXIII:117314-119002 3.97e-01 100 chrXVI:869273-869829 7.23e-01 100 chrIV:1359346-1361468 4.20e-01 100 chrVIII:375022-375855 4.84e-04 14_[+3(3.65e-07)]_71 chrXV:505001-505476 5.72e-01 100 chrXIII:352062-353258 3.07e-02 1_[+1(4.76e-05)]_69 chrXIV:104594-105115 4.02e-12 6_[+2(5.47e-08)]_7_[+1(1.98e-09)]_\ [-3(1.88e-05)]_13 chrXIV:602107-602552 1.51e-04 38_[+2(2.18e-08)]_33 chrIX:426731-427874 5.01e-02 54_[-3(1.72e-05)]_31 chrVII:271055-271774 8.93e-01 100 chrIV:645008-645372 5.58e-14 13_[-1(9.98e-12)]_6_[-2(3.76e-10)]_\ 22 chrIV:1449771-1451592 1.76e-01 100 chrVII:328395-329125 8.51e-01 100 chrXIII:407869-408982 1.30e-01 100 chrXIII:732017-733539 5.50e-01 100 chrXIII:291343-291621 4.80e-01 100 chrIII:123382-123814 1.22e-12 29_[-1(2.61e-16)]_41 chrVII:319243-320154 6.31e-01 100 chrX:608329-608429 4.56e-01 100 chrV:85084-87008 9.18e-01 100 chrXV:605151-606041 6.17e-02 34_[+1(6.95e-05)]_36 chrXIII:306085-307187 4.47e-03 45_[-2(1.26e-06)]_26 chrXI:140647-142797 2.55e-03 3_[+3(6.64e-07)]_82 chrX:517666-517766 4.45e-03 21_[-2(6.02e-06)]_50 chrVIII:62609-62910 1.15e-02 51_[+2(6.45e-06)]_20 chrIV:768248-769130 1.80e-01 100 chrXVI:121748-124482 8.15e-01 100 chrII:167945-168171 3.46e-01 100 chrIV:83444-83852 2.19e-03 27_[-3(2.34e-07)]_58 chrIV:980748-981168 5.15e-05 66_[-1(6.15e-08)]_4 chrII:9372-9880 1.00e-07 12_[+2(1.73e-07)]_18_[+1(1.11e-07)]_\ 11 chrIV:927526-930332 2.62e-01 100 chrXIII:123002-124235 8.65e-01 100 chrII:680247-682771 2.24e-03 67_[+3(1.85e-06)]_18 chrXVI:692774-695078 3.81e-01 100 chrXII:241663-241983 5.36e-01 100 chrII:168329-169647 5.55e-01 100 chrXIV:575057-576434 2.92e-01 100 chrIII:74-1051 2.43e-01 100 chrXI:513188-513591 1.99e-04 29_[-2(6.81e-08)]_42 chrXIII:872551-873086 6.38e-01 100 chrIV:1434437-1434690 2.48e-01 100 chrIV:808313-810357 7.65e-01 100 chrXII:47460-49197 3.76e-02 28_[-3(2.41e-05)]_57 chrII:604132-607544 9.29e-01 100 chrXVI:378678-378960 7.10e-01 100 chrI:65804-67845 9.29e-01 100 chrVII:437184-438422 2.56e-01 100 chrXII:854965-855223 3.63e-01 100 chrXVI:350204-353333 4.76e-02 44_[-1(5.40e-05)]_26 chrIV:434048-435144 1.39e-01 100 chrVI:162026-162394 3.26e-01 100 chrXII:92269-92733 9.05e-01 100 chrV:130798-131354 3.34e-08 56_[-1(5.96e-11)]_14 chrX:440183-440283 7.10e-01 100 chrIII:11114-11527 2.81e-01 100 chrXVI:559909-560272 3.03e-01 100 chrIII:137586-139373 5.71e-02 100 chrIII:141966-142985 3.35e-01 100 chrIV:1490630-1490815 6.88e-01 100 chrII:241630-242489 7.92e-01 100 chrVII:110313-110780 3.29e-01 100 chrXI:364445-365278 3.80e-02 100 chrXII:793712-797500 9.01e-03 7_[-3(9.06e-06)]_78 chrXV:896507-898202 8.37e-01 100 chrII:234864-235988 9.34e-01 100 chrX:115805-115905 2.38e-03 11_[-2(9.81e-07)]_60 chrV:423086-425484 8.18e-01 100 chrVII:939021-939786 1.71e-02 79_[+3(2.75e-06)]_6 chrVIII:125948-127861 5.25e-01 100 chrVII:706919-707173 5.38e-03 44_[+3(7.86e-07)]_6_[+3(6.72e-06)]_\ 20 chrII:591364-591811 1.71e-02 70_[+3(1.88e-05)]_15 chrIII:177027-178850 3.37e-02 82_[-3(2.62e-05)]_3 chrXII:837594-839435 7.76e-01 100 chrII:114011-115245 9.30e-01 100 chrXV:796448-798833 1.36e-02 72_[+3(1.72e-05)]_13 chrVIII:410773-411775 6.15e-01 100 chrVII:541714-542142 6.35e-07 12_[+1(2.61e-09)]_58 chrXII:257425-259502 6.90e-01 100 chrIV:1301535-1302869 1.98e-02 63_[-3(1.20e-05)]_22 chrXIII:914702-915433 1.61e-01 100 chrXV:571736-572333 1.29e-04 14_[+1(5.75e-08)]_56 chrIV:538826-539407 1.61e-02 43_[+1(2.81e-05)]_27 chrV:225448-225718 5.33e-03 18_[+3(7.86e-07)]_67 chrXV:594230-594640 1.89e-03 5_[-2(7.61e-07)]_66 chrIII:69174-69531 4.57e-02 100 chrII:255018-255757 8.16e-01 100 chrXV:866596-868163 1.67e-01 100 chrII:45582-46844 9.00e-01 100 chrIX:68267-68463 1.24e-02 62_[-3(6.72e-06)]_23 chrVII:533807-535164 6.13e-01 100 chrII:408617-408927 4.54e-01 100 chrXIII:605830-606007 3.61e-01 100 chrXI:589807-590187 7.06e-01 100 chrIV:306253-307852 3.68e-01 100 chrIV:1361678-1362608 4.34e-01 100 chrII:59536-61221 6.20e-01 100 chrIV:655712-657418 7.05e-01 100 chrIV:568671-569289 5.47e-04 39_[+2(6.81e-08)]_32 chrIII:162102-163874 3.27e-01 100 chrXIV:301308-302271 1.93e-01 100 chrXIII:23829-25716 7.94e-01 100 chrXV:832206-832874 2.99e-01 100 chrIV:802574-803029 4.24e-07 16_[-2(3.76e-10)]_55 chrI:182205-183208 1.47e-01 100 chrXV:911933-912666 6.78e-01 100 chrX:523862-523962 9.33e-01 100 chrXII:950122-953864 8.20e-01 100 chrIV:1351944-1353447 9.85e-01 100 chrVII:823349-823715 7.99e-13 5_[+2(4.89e-08)]_8_[+1(2.20e-11)]_\ 28 chrXIII:754463-755262 4.43e-01 100 chrX:391801-391901 3.09e-01 100 chrI:166174-166703 5.45e-01 100 chrXI:355230-356497 7.59e-01 100 chrVII:640835-642409 9.59e-01 100 chrVII:294-2234 3.72e-01 100 chrXVI:878868-880573 3.62e-02 44_[+2(1.58e-05)]_27 chrV:487136-487566 1.81e-09 30_[-1(2.61e-09)]_6_[-2(9.81e-07)]_\ 5 chrIV:45166-46241 6.26e-01 100 chrIV:358034-358323 5.49e-01 100 chrII:236535-237374 6.70e-02 13_[-3(3.56e-05)]_72 chrXII:426950-427491 9.85e-05 2_[+1(5.75e-08)]_68 chrVI:63986-65335 1.30e-01 100 chrX:662684-662784 9.28e-01 100 chrXIII:277523-279833 9.90e-01 100 chrI:69885-70345 1.87e-01 100 chrV:550870-551573 1.47e-02 43_[-3(2.75e-06)]_42 chrVII:316624-317418 2.19e-01 100 chrVII:856553-857677 6.73e-01 100 chrXIII:873456-873617 5.12e-01 100 chrVII:648739-649407 4.86e-04 59_[+3(4.90e-06)]_26 chrXIV:664281-667216 2.03e-01 100 chrIX:322426-324378 2.56e-01 100 chrXIII:321006-321320 3.04e-18 19_[+3(2.75e-06)]_[-1(1.31e-11)]_7_\ [-2(2.06e-11)] chrX:354026-354126 2.27e-03 45_[+2(9.81e-07)]_26 chrVII:610452-611514 1.68e-01 100 chrVIII:455518-455999 8.07e-01 100 chrXII:728970-730484 9.89e-01 100 chrXIII:454313-455377 6.67e-01 100 chrXV:1048999-1049573 7.56e-01 100 chrXV:216294-216689 5.00e-01 100 chrV:51752-53302 9.26e-01 100 chrXVI:39299-40662 6.84e-01 100 chrVII:774122-774628 4.48e-15 29_[+2(2.06e-11)]_7_[+1(1.31e-11)]_\ 5 chrXV:960913-963497 6.79e-01 100 chrVIII:48201-48642 8.71e-01 100 chrI:65166-65408 9.57e-01 100 chrIV:667737-668196 1.95e-02 75_[+3(9.91e-06)]_10 chrXVI:303051-304357 1.50e-01 100 chrV:434397-434978 5.29e-01 100 chrVI:82405-84430 9.62e-01 100 chrIV:1233680-1234248 4.23e-01 100 chrV:490999-491960 4.99e-01 100 chrXIII:219575-221005 2.19e-02 12_[+2(5.09e-05)]_59 chrVI:55041-55889 2.78e-01 100 chrVI:136659-137693 5.79e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************