******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71800-73694 1.0000 100 chrI:81848-82381 1.0000 100 chrI:138971-139799 1.0000 100 chrI:142193-143433 1.0000 100 chrI:166168-166650 1.0000 100 chrI:180948-181552 1.0000 100 chrI:182091-183233 1.0000 100 chrII:9376-9844 1.0000 100 chrII:36241-36574 1.0000 100 chrII:44744-45348 1.0000 100 chrII:60773-61957 1.0000 100 chrII:88953-90029 1.0000 100 chrII:165067-165431 1.0000 100 chrII:167609-169619 1.0000 100 chrII:181302-182002 1.0000 100 chrII:197256-197860 1.0000 100 chrII:226981-227347 1.0000 100 chrII:266189-266655 1.0000 100 chrII:326409-327093 1.0000 100 chrII:332300-332761 1.0000 100 chrII:347401-347932 1.0000 100 chrII:350630-351135 1.0000 100 chrII:405680-406334 1.0000 100 chrII:408652-408894 1.0000 100 chrII:415515-416450 1.0000 100 chrII:476815-477740 1.0000 100 chrII:592881-593440 1.0000 100 chrII:602621-607132 1.0000 100 chrII:642840-643320 1.0000 100 chrII:644751-645419 1.0000 100 chrIII:69-1024 1.0000 100 chrIII:57352-58523 1.0000 100 chrIII:82377-82688 1.0000 100 chrIII:90859-91105 1.0000 100 chrIII:123365-123806 1.0000 100 chrIII:127582-127893 1.0000 100 chrIII:137797-138985 1.0000 100 chrIII:141965-142980 1.0000 100 chrIII:149745-150163 1.0000 100 chrIII:151034-151567 1.0000 100 chrIII:163456-163875 1.0000 100 chrIII:168112-168551 1.0000 100 chrIII:177093-178802 1.0000 100 chrIII:227754-228494 1.0000 100 chrIII:295301-296012 1.0000 100 chrIII:315620-316594 1.0000 100 chrIV:8-339 1.0000 100 chrIV:83434-84136 1.0000 100 chrIV:117137-117775 1.0000 100 chrIV:129796-131101 1.0000 100 chrIV:216549-217995 1.0000 100 chrIV:221699-222396 1.0000 100 chrIV:229471-230465 1.0000 100 chrIV:306430-308411 1.0000 100 chrIV:321642-321979 1.0000 100 chrIV:340642-341695 1.0000 100 chrIV:357813-358516 1.0000 100 chrIV:359356-359970 1.0000 100 chrIV:360293-360731 1.0000 100 chrIV:381976-384766 1.0000 100 chrIV:409675-410829 1.0000 100 chrIV:411071-411641 1.0000 100 chrIV:434013-434859 1.0000 100 chrIV:437551-438084 1.0000 100 chrIV:465185-465633 1.0000 100 chrIV:488424-489118 1.0000 100 chrIV:490233-491280 1.0000 100 chrIV:491464-492606 1.0000 100 chrIV:519660-519961 1.0000 100 chrIV:520773-521116 1.0000 100 chrIV:538943-539269 1.0000 100 chrIV:568696-569500 1.0000 100 chrIV:578809-580692 1.0000 100 chrIV:600763-602570 1.0000 100 chrIV:619744-620254 1.0000 100 chrIV:644863-645370 1.0000 100 chrIV:667659-668212 1.0000 100 chrIV:802582-803008 1.0000 100 chrIV:834254-835558 1.0000 100 chrIV:835756-838006 1.0000 100 chrIV:884265-884588 1.0000 100 chrIV:914053-915306 1.0000 100 chrIV:946121-946643 1.0000 100 chrIV:980610-981168 1.0000 100 chrIV:992696-993354 1.0000 100 chrIV:1013750-1013980 1.0000 100 chrIV:1016957-1017473 1.0000 100 chrIV:1075092-1075757 1.0000 100 chrIV:1095131-1095660 1.0000 100 chrIV:1150732-1151159 1.0000 100 chrIV:1161922-1164577 1.0000 100 chrIV:1175590-1176062 1.0000 100 chrIV:1201560-1202130 1.0000 100 chrIV:1256838-1257280 1.0000 100 chrIV:1299963-1300139 1.0000 100 chrIV:1300420-1301352 1.0000 100 chrIV:1305205-1305808 1.0000 100 chrIV:1351856-1353553 1.0000 100 chrIV:1355721-1356026 1.0000 100 chrIV:1359190-1360876 1.0000 100 chrIV:1401096-1403466 1.0000 100 chrIV:1450761-1451238 1.0000 100 chrIV:1461469-1461840 1.0000 100 chrIV:1489359-1490816 1.0000 100 chrIX:23424-25276 1.0000 100 chrIX:68247-68868 1.0000 100 chrIX:98541-99323 1.0000 100 chrIX:99627-100064 1.0000 100 chrIX:131219-132861 1.0000 100 chrIX:174892-175225 1.0000 100 chrIX:183323-183687 1.0000 100 chrIX:197382-197798 1.0000 100 chrIX:210508-211426 1.0000 100 chrIX:212714-214600 1.0000 100 chrIX:247892-249347 1.0000 100 chrIX:254227-254573 1.0000 100 chrIX:255049-256952 1.0000 100 chrIX:257329-257992 1.0000 100 chrIX:299568-300489 1.0000 100 chrIX:315853-316608 1.0000 100 chrIX:316884-318472 1.0000 100 chrIX:322495-324390 1.0000 100 chrIX:325750-326245 1.0000 100 chrIX:336002-336632 1.0000 100 chrIX:370211-370842 1.0000 100 chrV:53501-53929 1.0000 100 chrV:61099-62159 1.0000 100 chrV:67164-69372 1.0000 100 chrV:85078-86983 1.0000 100 chrV:99859-100288 1.0000 100 chrV:117208-118304 1.0000 100 chrV:130820-131381 1.0000 100 chrV:135190-136118 1.0000 100 chrV:138470-139811 1.0000 100 chrV:140186-141296 1.0000 100 chrV:176892-177439 1.0000 100 chrV:249790-250510 1.0000 100 chrV:270345-270860 1.0000 100 chrV:288162-288731 1.0000 100 chrV:305767-307396 1.0000 100 chrV:311667-312291 1.0000 100 chrV:354672-355776 1.0000 100 chrV:362189-363293 1.0000 100 chrV:395586-398136 1.0000 100 chrV:422812-423526 1.0000 100 chrV:431025-431955 1.0000 100 chrV:434401-434976 1.0000 100 chrV:435558-436002 1.0000 100 chrV:438510-438958 1.0000 100 chrV:441779-442709 1.0000 100 chrV:443068-443380 1.0000 100 chrV:469150-470018 1.0000 100 chrV:487065-487606 1.0000 100 chrV:492211-492552 1.0000 100 chrV:550988-551595 1.0000 100 chrVI:64861-65373 1.0000 100 chrVI:95472-95911 1.0000 100 chrVI:101162-102537 1.0000 100 chrVI:137221-137696 1.0000 100 chrVI:157848-158209 1.0000 100 chrVI:162020-162385 1.0000 100 chrVI:167240-167640 1.0000 100 chrVI:180651-181247 1.0000 100 chrVI:191238-191784 1.0000 100 chrVI:210435-211726 1.0000 100 chrVI:220126-222151 1.0000 100 chrVI:222599-224152 1.0000 100 chrVI:224347-225346 1.0000 100 chrVI:226360-227268 1.0000 100 chrVII:110290-110781 1.0000 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chrVII:648784-649386 1.0000 100 chrVII:661541-661939 1.0000 100 chrVII:700260-701196 1.0000 100 chrVII:706718-707184 1.0000 100 chrVII:726314-728191 1.0000 100 chrVII:730962-732150 1.0000 100 chrVII:736174-736957 1.0000 100 chrVII:738913-739594 1.0000 100 chrVII:774146-774689 1.0000 100 chrVII:779406-779933 1.0000 100 chrVII:788018-788764 1.0000 100 chrVII:794090-795468 1.0000 100 chrVII:806249-807298 1.0000 100 chrVII:823342-823731 1.0000 100 chrVII:828390-828976 1.0000 100 chrVII:845415-846156 1.0000 100 chrVII:846978-847953 1.0000 100 chrVII:856730-857684 1.0000 100 chrVII:876169-879040 1.0000 100 chrVII:882778-884078 1.0000 100 chrVII:902659-903125 1.0000 100 chrVII:930741-931661 1.0000 100 chrVII:970719-971964 1.0000 100 chrVII:972191-973626 1.0000 100 chrVII:1000322-1000633 1.0000 100 chrVII:1003888-1004405 1.0000 100 chrVIII:34551-36111 1.0000 100 chrVIII:62518-63085 1.0000 100 chrVIII:74748-75850 1.0000 100 chrVIII:103595-105448 1.0000 100 chrVIII:115827-116411 1.0000 100 chrVIII:120106-121685 1.0000 100 chrVIII:122184-122630 1.0000 100 chrVIII:125371-125630 1.0000 100 chrVIII:125874-126320 1.0000 100 chrVIII:134097-134703 1.0000 100 chrVIII:145461-146486 1.0000 100 chrVIII:147884-149291 1.0000 100 chrVIII:173430-176027 1.0000 100 chrVIII:214119-214364 1.0000 100 chrVIII:237752-238132 1.0000 100 chrVIII:296863-297262 1.0000 100 chrVIII:358260-358764 1.0000 100 chrVIII:382707-383364 1.0000 100 chrVIII:388689-389004 1.0000 100 chrVIII:451309-453096 1.0000 100 chrVIII:466814-467227 1.0000 100 chrVIII:475521-475907 1.0000 100 chrVIII:505788-506227 1.0000 100 chrVIII:554192-554742 1.0000 100 chrVIII:555104-555445 1.0000 100 chrX:58999-59459 1.0000 100 chrX:73365-74684 1.0000 100 chrX:74877-75707 1.0000 100 chrX:89989-90443 1.0000 100 chrX:115804-116247 1.0000 100 chrX:120477-121899 1.0000 100 chrX:122191-122550 1.0000 100 chrX:156057-157871 1.0000 100 chrX:196777-197441 1.0000 100 chrX:204550-205088 1.0000 100 chrX:227744-228533 1.0000 100 chrX:233713-234125 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chrXI:202486-203301 1.0000 100 chrXI:219799-220142 1.0000 100 chrXI:258082-259954 1.0000 100 chrXI:261132-261847 1.0000 100 chrXI:283013-284487 1.0000 100 chrXI:302695-303218 1.0000 100 chrXI:307932-308441 1.0000 100 chrXI:313151-314007 1.0000 100 chrXI:326424-327507 1.0000 100 chrXI:334342-334979 1.0000 100 chrXI:379685-380375 1.0000 100 chrXI:382162-382467 1.0000 100 chrXI:430807-432301 1.0000 100 chrXI:457988-458972 1.0000 100 chrXI:490766-491227 1.0000 100 chrXI:512046-513572 1.0000 100 chrXI:517783-518068 1.0000 100 chrXI:518850-520623 1.0000 100 chrXI:558452-559440 1.0000 100 chrXI:559694-559944 1.0000 100 chrXI:578616-579354 1.0000 100 chrXI:617752-618540 1.0000 100 chrXI:618722-619292 1.0000 100 chrXII:11231-11522 1.0000 100 chrXII:47684-48397 1.0000 100 chrXII:48690-49137 1.0000 100 chrXII:92329-93083 1.0000 100 chrXII:167774-168244 1.0000 100 chrXII:198649-199717 1.0000 100 chrXII:201671-202681 1.0000 100 chrXII:214739-215061 1.0000 100 chrXII:231727-234209 1.0000 100 chrXII:234586-234814 1.0000 100 chrXII:235055-235333 1.0000 100 chrXII:241613-242011 1.0000 100 chrXII:282591-284123 1.0000 100 chrXII:366032-366545 1.0000 100 chrXII:369669-370964 1.0000 100 chrXII:374205-374644 1.0000 100 chrXII:424116-424566 1.0000 100 chrXII:426878-427457 1.0000 100 chrXII:440452-441278 1.0000 100 chrXII:448000-448854 1.0000 100 chrXII:459591-460745 1.0000 100 chrXII:498483-500268 1.0000 100 chrXII:515303-517060 1.0000 100 chrXII:521642-522451 1.0000 100 chrXII:592272-592819 1.0000 100 chrXII:605134-606041 1.0000 100 chrXII:628166-628635 1.0000 100 chrXII:636806-639951 1.0000 100 chrXII:656842-657211 1.0000 100 chrXII:673828-674606 1.0000 100 chrXII:713152-713610 1.0000 100 chrXII:731058-732339 1.0000 100 chrXII:734592-734934 1.0000 100 chrXII:780487-781878 1.0000 100 chrXII:783891-784521 1.0000 100 chrXII:793707-795947 1.0000 100 chrXII:796332-797776 1.0000 100 chrXII:805421-805615 1.0000 100 chrXII:805835-806836 1.0000 100 chrXII:818504-819216 1.0000 100 chrXII:837651-839297 1.0000 100 chrXII:875161-875611 1.0000 100 chrXII:897687-899003 1.0000 100 chrXII:903194-904446 1.0000 100 chrXII:921716-924333 1.0000 100 chrXII:929829-931847 1.0000 100 chrXII:932084-932528 1.0000 100 chrXII:951008-953894 1.0000 100 chrXII:962801-963266 1.0000 100 chrXII:975770-976178 1.0000 100 chrXII:1011734-1013254 1.0000 100 chrXII:1018118-1019740 1.0000 100 chrXII:1028201-1028564 1.0000 100 chrXII:1029998-1030343 1.0000 100 chrXII:1051903-1052220 1.0000 100 chrXIII:91390-92108 1.0000 100 chrXIII:131584-132096 1.0000 100 chrXIII:145924-146274 1.0000 100 chrXIII:168219-169271 1.0000 100 chrXIII:195933-196297 1.0000 100 chrXIII:225156-225707 1.0000 100 chrXIII:253332-253586 1.0000 100 chrXIII:258831-259379 1.0000 100 chrXIII:288086-289993 1.0000 100 chrXIII:290538-291208 1.0000 100 chrXIII:296694-297168 1.0000 100 chrXIII:297422-298910 1.0000 100 chrXIII:302778-303790 1.0000 100 chrXIII:306504-306810 1.0000 100 chrXIII:320990-321323 1.0000 100 chrXIII:352083-352568 1.0000 100 chrXIII:362931-363971 1.0000 100 chrXIII:372176-372663 1.0000 100 chrXIII:379159-379637 1.0000 100 chrXIII:420327-420911 1.0000 100 chrXIII:433362-433776 1.0000 100 chrXIII:463361-463882 1.0000 100 chrXIII:480386-480825 1.0000 100 chrXIII:499061-501128 1.0000 100 chrXIII:504912-505214 1.0000 100 chrXIII:549920-553255 1.0000 100 chrXIII:572338-573149 1.0000 100 chrXIII:586389-586908 1.0000 100 chrXIII:652444-652982 1.0000 100 chrXIII:731868-733580 1.0000 100 chrXIII:747767-748128 1.0000 100 chrXIII:753031-755759 1.0000 100 chrXIII:768188-768444 1.0000 100 chrXIII:807640-808542 1.0000 100 chrXIII:837701-838329 1.0000 100 chrXIII:859304-860835 1.0000 100 chrXIII:872556-872950 1.0000 100 chrXIII:887049-888733 1.0000 100 chrXIV:63070-64377 1.0000 100 chrXIV:87393-87794 1.0000 100 chrXIV:96024-96521 1.0000 100 chrXIV:102569-103774 1.0000 100 chrXIV:104621-105046 1.0000 100 chrXIV:241354-242372 1.0000 100 chrXIV:302658-303978 1.0000 100 chrXIV:330502-331645 1.0000 100 chrXIV:374619-375079 1.0000 100 chrXIV:442764-443250 1.0000 100 chrXIV:444208-445903 1.0000 100 chrXIV:495198-495785 1.0000 100 chrXIV:546532-547644 1.0000 100 chrXIV:560605-560867 1.0000 100 chrXIV:568052-568616 1.0000 100 chrXIV:569155-570159 1.0000 100 chrXIV:575106-577600 1.0000 100 chrXIV:602111-602591 1.0000 100 chrXIV:631698-632112 1.0000 100 chrXIV:632395-632804 1.0000 100 chrXIV:664246-665196 1.0000 100 chrXIV:725667-726339 1.0000 100 chrXIV:783516-784326 1.0000 100 chrXV:79738-80136 1.0000 100 chrXV:92821-94116 1.0000 100 chrXV:94333-94799 1.0000 100 chrXV:109518-110651 1.0000 100 chrXV:110853-111209 1.0000 100 chrXV:113519-113990 1.0000 100 chrXV:159163-160129 1.0000 100 chrXV:161071-161745 1.0000 100 chrXV:167951-168474 1.0000 100 chrXV:216279-216715 1.0000 100 chrXV:226404-226914 1.0000 100 chrXV:228098-228886 1.0000 100 chrXV:229534-229753 1.0000 100 chrXV:253784-254667 1.0000 100 chrXV:274446-275012 1.0000 100 chrXV:282001-282802 1.0000 100 chrXV:287198-288411 1.0000 100 chrXV:300867-301641 1.0000 100 chrXV:340183-340583 1.0000 100 chrXV:353903-354330 1.0000 100 chrXV:438452-439176 1.0000 100 chrXV:444639-446212 1.0000 100 chrXV:464286-464951 1.0000 100 chrXV:504808-505506 1.0000 100 chrXV:506115-506714 1.0000 100 chrXV:571752-572504 1.0000 100 chrXV:594309-594664 1.0000 100 chrXV:619000-623329 1.0000 100 chrXV:639123-640208 1.0000 100 chrXV:663011-664099 1.0000 100 chrXV:678660-679174 1.0000 100 chrXV:710129-710687 1.0000 100 chrXV:723033-724785 1.0000 100 chrXV:779662-780982 1.0000 100 chrXV:796758-798768 1.0000 100 chrXV:832348-832742 1.0000 100 chrXV:853819-854797 1.0000 100 chrXV:866464-868129 1.0000 100 chrXV:881215-882406 1.0000 100 chrXV:896943-898016 1.0000 100 chrXV:899830-901658 1.0000 100 chrXV:912237-912655 1.0000 100 chrXV:925192-925451 1.0000 100 chrXV:968113-968685 1.0000 100 chrXV:976281-976717 1.0000 100 chrXV:978587-979205 1.0000 100 chrXV:979481-981290 1.0000 100 chrXV:1004103-1004379 1.0000 100 chrXV:1025644-1026087 1.0000 100 chrXV:1027742-1029127 1.0000 100 chrXVI:55840-56429 1.0000 100 chrXVI:76369-77164 1.0000 100 chrXVI:134789-135869 1.0000 100 chrXVI:188149-189472 1.0000 100 chrXVI:210053-210468 1.0000 100 chrXVI:279992-280227 1.0000 100 chrXVI:281573-281994 1.0000 100 chrXVI:302410-304316 1.0000 100 chrXVI:338749-339130 1.0000 100 chrXVI:378665-378992 1.0000 100 chrXVI:405224-406597 1.0000 100 chrXVI:431971-434319 1.0000 100 chrXVI:435655-436180 1.0000 100 chrXVI:520111-520529 1.0000 100 chrXVI:559949-560286 1.0000 100 chrXVI:572044-572578 1.0000 100 chrXVI:581798-582489 1.0000 100 chrXVI:622346-622829 1.0000 100 chrXVI:642287-643357 1.0000 100 chrXVI:679016-679383 1.0000 100 chrXVI:689375-689881 1.0000 100 chrXVI:699808-700395 1.0000 100 chrXVI:731644-732772 1.0000 100 chrXVI:744080-744608 1.0000 100 chrXVI:769035-769496 1.0000 100 chrXVI:775646-776089 1.0000 100 chrXVI:794289-794836 1.0000 100 chrXVI:810583-811277 1.0000 100 chrXVI:819333-819911 1.0000 100 chrXVI:856731-857173 1.0000 100 chrXVI:860170-860693 1.0000 100 chrXVI:879788-880005 1.0000 100 chrXVI:880186-880574 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 519 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 51900 N= 519 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.297 C 0.203 G 0.203 T 0.297 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MOT1/background): A 0.304 C 0.196 G 0.196 T 0.304 ******************************************************************************** ******************************************************************************** MOTIF GRTCVBSGGTTCGATYCCS MEME-1 width = 19 sites = 87 llr = 1358 E-value = 5.6e-242 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRTCVBSGGTTCGATYCCS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 132:3:12::::3a2::1: pos.-specific C 2118453::::a::24a75 probability G 661:2357a:::7:2:::4 matrix T ::62:211:aa:::46:21 bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 **** * * Relative 1.4 * ****** * Entropy 1.2 * ******* * (22.5 bits) 0.9 * * ******* **** 0.7 ** * ********* **** 0.5 ** *********** **** 0.2 ************** **** 0.0 ------------------- Multilevel GGTCCCGGGTTCGATTCCC consensus CA TAGC A AC G sequence GT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCVBSGGTTCGATYCCS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------- chrIII:123365-123806 - 52 4.15e-12 GGGTGCGGGA GGTCCCGGGTTCGAGTCCC GGCTCGCCCC chrIV:1256838-1257280 - 9 2.75e-11 CCCAAGCATG GGGCCCGGGTTCGATTCCC GGCTTCCG chrXVI:860170-860693 + 40 2.95e-10 GCCATCGTTG GGCCCCCGGTTCGATTCCG GGCTTGCGCA chrXVI:572044-572578 + 50 2.95e-10 GCCATCGTTG GGCCCCCGGTTCGATTCCG GGCTTGCGCA chrXV:226404-226914 - 12 2.95e-10 GCCATCGTTG GGCCCCCGGTTCGATTCCG GGCTTGCGCA chrX:531600-532239 + 1 2.95e-10 . GGCCCCCGGTTCGATTCCG GGCTTGCGCA chrX:396594-396947 - 16 2.95e-10 GCCATCGTTG GGCCCCCGGTTCGATTCCG GGCTTGCGCA chrXII:214739-215061 - 43 3.56e-10 GCAAGGAAGA GGTCATCGGTTCGATTCCG GTTGCGTCCA chrXVI:819333-819911 + 2 7.36e-10 G GATCAGCGGTTCGATCCCG CTAGAGACCA chrXIV:602111-602591 + 56 7.36e-10 ATAACGCGGG GATCAGCGGTTCGATCCCG CTAGAGACCA chrXII:1051903-1052220 - 70 7.36e-10 ATAACGCGGG GATCAGCGGTTCGATCCCG CTAGAGACCA chrV:550988-551595 - 54 7.36e-10 ATAACGCGGG GATCAGCGGTTCGATCCCG CTAGAGACCA chrV:443068-443380 - 38 7.36e-10 ATAACGCGGG GATCAGCGGTTCGATCCCG CTAGAGACCA chrII:197256-197860 + 31 7.36e-10 ATAACGCGGG GATCAGCGGTTCGATCCCG CTAGAGACCA chrXVI:856731-857173 + 44 1.40e-09 GCATGGGAGA GGTCTCCGGTTCGATTCCG GACTCGTCCA chrXIII:320990-321323 - 51 1.40e-09 GCATGGGAGA GGTCTCCGGTTCGATTCCG GACTCGTCCA chrXI:219799-220142 + 19 1.40e-09 GCATGGGAGA GGTCTCCGGTTCGATTCCG GACTCGTCCA chrVII:774146-774689 + 26 1.40e-09 GCATGGGAGA GGTCTCCGGTTCGATTCCG GACTCGTCCA chrXVI:581798-582489 + 13 1.63e-09 TTAATCATAA GGTTAGGGGTTCGAGCCCC CTACAGGGCT chrXIII:480386-480825 - 76 1.63e-09 TCATAA GGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVII:185499-185913 - 68 1.63e-09 TTAATCATAA GGTTAGGGGTTCGAGCCCC CTACAGGGCT chrV:435558-436002 - 32 1.63e-09 TTAATCATAA GGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIII:151034-151567 - 44 1.63e-09 TTAATCATAA GGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVIII:475521-475907 - 52 2.22e-09 ACACGGCAAA GGTCCCGAGTTCGATCCTC GGTTGGAACA chrXIV:96024-96521 - 29 2.56e-09 TCCAAGGTGG GGACACGGGTTCGATTCTC GTACCGCTCA chrVII:779406-779933 + 40 2.56e-09 TCCAAGGTGG GGACACGGGTTCGATTCTC GTACCGCTCA chrXIII:290538-291208 + 21 5.18e-09 TTCACCGTGG AGACCGGGGTTCGACTCCC CGTATCGGAG chrXI:140651-141368 - 69 5.18e-09 TTCACCGTGG AGACCGGGGTTCGACTCCC CGTATCGGAG chrVII:541713-542141 + 16 5.18e-09 TTCACCGTGG AGACCGGGGTTCGACTCCC CGTATCGGAG chrV:487065-487606 - 56 5.18e-09 TTCACCGTGG AGACCGGGGTTCGACTCCC CGTATCGGAG chrV:176892-177439 + 27 5.18e-09 TTCACCGTGG AGACCGGGGTTCGACTCCC CGTATCGGAG chrIV:1016957-1017473 - 52 5.18e-09 CTCACCGTGG AGACCGGGGTTCGACTCCC CGCTTCGGAG chrXIII:195933-196297 - 13 5.93e-09 GCATGCGAGA GGCCCTGGGTTCAATTCCC AGCTCGCCCC chrVIII:134097-134703 + 14 8.75e-09 TTGATCCGGA CAACCCCGGTTCGAATCCG GGTAGGACCT chrV:130820-131381 - 42 8.75e-09 TTGATCCGAA CAACCCCGGTTCGAATCCG GGTAAGACCT chrIII:168112-168551 - 30 8.75e-09 TTGATCCGGA CAACCCCGGTTCGAATCCG GGTAGGACCT chrII:350630-351135 + 38 8.75e-09 TTGATCCGGA CAACCCCGGTTCGAATCCG GGTAAGACCT chrXIII:747767-748128 - 5 1.27e-08 CTAATCAGAA GATTATGGGTTCGACCCCC ATCG chrXIII:131584-132096 - 45 1.27e-08 CTAATCAGAA GATTATGGGTTCGACCCCC ATCGTGAGTG chrXI:162317-162763 - 7 1.27e-08 CTAATCAGAA GATTATGGGTTCGACCCCC ATCGTG chrX:374190-374854 - 44 1.27e-08 CTAATCAGAA GATTATGGGTTCGACCCCC ATCGTGAGTG chrX:355188-355717 + 15 1.27e-08 CTAATCAGAA GATTATGGGTTCGACCCCC ATCGTGAGTG chrXIII:586389-586908 - 48 1.61e-08 ACACGCAGAA CGTCCCCAGTTCGATCCTG GGCGAAATCA chrXIII:420327-420911 - 29 1.61e-08 ACACGCAGAA CGTCCCCAGTTCGATCCTG GGCGAAATCA chrXI:307932-308441 - 18 1.61e-08 ACACGCAGAA CGTCCCCAGTTCGATCCTG GGCGAAATCA chrVII:823342-823731 + 41 1.61e-08 ACACGCAGAA CGTCCCCAGTTCGATCCTG GGCGAAATCA chrV:438510-438958 + 61 1.61e-08 ACACGCAGAA CGTCCCCAGTTCGATCCTG GGCGAAATCA chrVII:115332-115739 + 70 2.03e-08 GATACCGAAA TGTCAGGGGTTCGAGCCCC CTATGAGGAG chrIV:359356-359970 + 31 2.03e-08 GATACCGAAA TGTCAGGGGTTCGAGCCCC CTATGAGGAG chrXIV:560605-560867 - 17 2.84e-08 GTAATGTGGA GATCATCGGTTCAAATCCG ATTGGAAGCA chrXIV:104621-105046 + 66 2.84e-08 GTAATGTGGA GATCATCGGTTCAAATCCG ATTGGAAGCA chrVIII:115827-116411 - 48 2.84e-08 GTAATGTGGA GATCATCGGTTCAAATCCG ATTGGAAGCA chrIX:174892-175225 + 67 2.84e-08 GTAATGTGGA GATCATCGGTTCAAATCCG ATTGGAAGCA chrII:266189-266655 + 50 2.84e-08 GTAATGTGGA GATCATCGGTTCAAATCCG ATTGGAAGCA chrVII:700260-701196 + 50 3.52e-08 ATCTCTTCGG AGGCGCGGGTTCAAACCCC GCGGGTATCA chrXVI:622346-622829 - 13 9.53e-08 GTTATCTGGA GGTCCTGTGTTCGATCCAC AGAATTCGCA chrXIII:463361-463882 + 26 9.53e-08 GTCGCGTGCC AGATCGGGGTTCAATTCCC CGTCGCGGAG chrXIII:352083-352568 + 67 9.53e-08 GTTATCTGGA GGTCCTGTGTTCGATCCAC AGAATTCGCA chrXII:426878-427457 + 58 9.53e-08 GTCGCGTGCC AGATCGGGGTTCAATTCCC CGTCGCGGAG chrX:204550-205088 + 9 9.53e-08 CGCGTGCC AGATCGGGGTTCAATTCCC CGTCGCGGAG chrVIII:358260-358764 - 26 9.53e-08 GTTATCTGGA GGTCCTGTGTTCGATCCAC AGAATTCGCA chrVII:440488-441017 - 24 9.53e-08 GTTATCTGGA GGTCCTGTGTTCGATCCAC AGAATTCGCA chrIV:1095131-1095660 - 35 9.53e-08 GATATCTGGA GGTCCTGTGTTCGATCCAC AGAGTTCGCA chrII:405680-406334 + 46 9.53e-08 GTCGCGTGCC AGATCGGGGTTCAATTCCC CGTCGCGGAG chrXVI:435655-436180 - 36 1.37e-07 CAAATCTGTT GGTCCTTAGTTCGATCCTG AGTGCGAGCT chrX:415676-416244 - 31 1.37e-07 GCAATCGAAG GGTTGCAGGTTCAATTCCT GTCCGTTTCA chrXII:975770-976178 - 69 2.67e-07 TTAATCGCAA GATCGTGAGTTCAACCCTC ACTGGGGTCG chrXII:374205-374644 + 25 2.67e-07 CGAACCAGAA GATTCCAGGTTCAAGTCCT GGCGGGGAAG chrXI:490766-491227 + 66 2.67e-07 CGAACCAGAA GATTCCAGGTTCAAGTCCT GGCGGGGAAG chrV:492211-492552 - 31 2.67e-07 CGAACCAGAA GATTCCAGGTTCAAGTCCT GGCGGGGAAG chrIV:619744-620254 - 30 2.67e-07 CGAACCAGAA GATTCCAGGTTCAAGTCCT GGCGGGGAAG chrIII:127582-127893 + 74 2.67e-07 TTAATCGCAA GATCGTGAGTTCAACCCTC ACTGGGGT chrX:523732-524339 - 37 3.37e-07 TGGGCTTTGC CCGCGCAGGTTCGAGTCCT GCAGTTGTCG chrVIII:466814-467227 + 63 3.37e-07 GTAATGCAAA GGTCGCTAGTTCAATTCTG GCAGGTGGCA chrIV:437551-438084 + 58 3.37e-07 TGGGCTTTGC CCGCGCAGGTTCGAGTCCT GCAGTTGTCG chrII:226981-227347 + 14 3.37e-07 TGGGCTTTGC CCGCGCAGGTTCGAGTCCT GCAGTTGTCG chrIV:519660-519961 + 38 4.20e-07 GGACGGTTGT CCGCGCGAGTTCGAACCTC GCATCCTTCA chrII:347401-347932 + 42 4.20e-07 GGACGGTTGT CCGCGCGAGTTCGAACCTC GCATCCTTCA chrII:9376-9844 + 78 4.20e-07 GGACGGTTGT CCGCGCGAGTTCGAACCTC GCAT chrXV:976281-976717 + 16 4.86e-07 ATAATCTGAA GGTCGAGAGTTCGAACCTC CCCTGGAGCA chrXIII:837701-838329 + 23 6.39e-07 GAAATCTTGA GATCGGGCGTTCGACTCGC CCCCGGGAGA chrIV:946121-946643 + 40 6.39e-07 GAAATCTTGA GATCGGGCGTTCGACTCGC CCCCGGGAGA chrXVI:744080-744608 + 33 6.83e-07 GTAATGCAAA GGTCGTTAGTTCAATTCTG ACAGGTGGCA chrXV:274446-275012 + 66 1.27e-06 TGGGTTTTAC CTGCGCAGGTTCGAATCCT GTCTGTGACG chrVI:191238-191784 - 62 1.27e-06 TGGGTTTTAC CTGCGCAGGTTCGAATCCT GTCTGTGACG chrXVI:689375-689881 + 40 1.58e-06 TGGGCTCTGC CCGCGCTGGTTCAAATCCT GCTGGTGTCG chrV:288162-288731 - 57 1.58e-06 TGGGCTCTGC CCGCGCTGGTTCAAATCCT GCTGGTGTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCVBSGGTTCGATYCCS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123365-123806 4.1e-12 51_[-1]_30 chrIV:1256838-1257280 2.7e-11 8_[-1]_73 chrXVI:860170-860693 2.9e-10 39_[+1]_42 chrXVI:572044-572578 2.9e-10 49_[+1]_32 chrXV:226404-226914 2.9e-10 11_[-1]_70 chrX:531600-532239 2.9e-10 [+1]_81 chrX:396594-396947 2.9e-10 15_[-1]_66 chrXII:214739-215061 3.6e-10 42_[-1]_39 chrXVI:819333-819911 7.4e-10 1_[+1]_80 chrXIV:602111-602591 7.4e-10 55_[+1]_26 chrXII:1051903-1052220 7.4e-10 69_[-1]_12 chrV:550988-551595 7.4e-10 53_[-1]_28 chrV:443068-443380 7.4e-10 37_[-1]_44 chrII:197256-197860 7.4e-10 30_[+1]_51 chrXVI:856731-857173 1.4e-09 43_[+1]_38 chrXIII:320990-321323 1.4e-09 50_[-1]_31 chrXI:219799-220142 1.4e-09 18_[+1]_63 chrVII:774146-774689 1.4e-09 25_[+1]_56 chrXVI:581798-582489 1.6e-09 12_[+1]_69 chrXIII:480386-480825 1.6e-09 75_[-1]_6 chrVII:185499-185913 1.6e-09 67_[-1]_14 chrV:435558-436002 1.6e-09 31_[-1]_50 chrIII:151034-151567 1.6e-09 43_[-1]_38 chrVIII:475521-475907 2.2e-09 51_[-1]_30 chrXIV:96024-96521 2.6e-09 28_[-1]_53 chrVII:779406-779933 2.6e-09 39_[+1]_42 chrXIII:290538-291208 5.2e-09 20_[+1]_61 chrXI:140651-141368 5.2e-09 68_[-1]_13 chrVII:541713-542141 5.2e-09 15_[+1]_66 chrV:487065-487606 5.2e-09 55_[-1]_26 chrV:176892-177439 5.2e-09 26_[+1]_55 chrIV:1016957-1017473 5.2e-09 51_[-1]_30 chrXIII:195933-196297 5.9e-09 12_[-1]_69 chrVIII:134097-134703 8.8e-09 13_[+1]_68 chrV:130820-131381 8.8e-09 41_[-1]_40 chrIII:168112-168551 8.8e-09 29_[-1]_52 chrII:350630-351135 8.8e-09 37_[+1]_44 chrXIII:747767-748128 1.3e-08 4_[-1]_77 chrXIII:131584-132096 1.3e-08 44_[-1]_37 chrXI:162317-162763 1.3e-08 6_[-1]_75 chrX:374190-374854 1.3e-08 43_[-1]_38 chrX:355188-355717 1.3e-08 14_[+1]_67 chrXIII:586389-586908 1.6e-08 47_[-1]_34 chrXIII:420327-420911 1.6e-08 28_[-1]_53 chrXI:307932-308441 1.6e-08 17_[-1]_64 chrVII:823342-823731 1.6e-08 40_[+1]_41 chrV:438510-438958 1.6e-08 60_[+1]_21 chrVII:115332-115739 2e-08 69_[+1]_12 chrIV:359356-359970 2e-08 30_[+1]_51 chrXIV:560605-560867 2.8e-08 16_[-1]_65 chrXIV:104621-105046 2.8e-08 65_[+1]_16 chrVIII:115827-116411 2.8e-08 47_[-1]_34 chrIX:174892-175225 2.8e-08 66_[+1]_15 chrII:266189-266655 2.8e-08 49_[+1]_32 chrVII:700260-701196 3.5e-08 49_[+1]_32 chrXVI:622346-622829 9.5e-08 12_[-1]_69 chrXIII:463361-463882 9.5e-08 25_[+1]_56 chrXIII:352083-352568 9.5e-08 66_[+1]_15 chrXII:426878-427457 9.5e-08 57_[+1]_24 chrX:204550-205088 9.5e-08 8_[+1]_73 chrVIII:358260-358764 9.5e-08 25_[-1]_56 chrVII:440488-441017 9.5e-08 23_[-1]_58 chrIV:1095131-1095660 9.5e-08 34_[-1]_47 chrII:405680-406334 9.5e-08 45_[+1]_36 chrXVI:435655-436180 1.4e-07 35_[-1]_46 chrX:415676-416244 1.4e-07 30_[-1]_51 chrXII:975770-976178 2.7e-07 68_[-1]_13 chrXII:374205-374644 2.7e-07 24_[+1]_57 chrXI:490766-491227 2.7e-07 65_[+1]_16 chrV:492211-492552 2.7e-07 30_[-1]_51 chrIV:619744-620254 2.7e-07 29_[-1]_52 chrIII:127582-127893 2.7e-07 73_[+1]_8 chrX:523732-524339 3.4e-07 36_[-1]_45 chrVIII:466814-467227 3.4e-07 62_[+1]_19 chrIV:437551-438084 3.4e-07 57_[+1]_24 chrII:226981-227347 3.4e-07 13_[+1]_68 chrIV:519660-519961 4.2e-07 37_[+1]_44 chrII:347401-347932 4.2e-07 41_[+1]_40 chrII:9376-9844 4.2e-07 77_[+1]_4 chrXV:976281-976717 4.9e-07 15_[+1]_66 chrXIII:837701-838329 6.4e-07 22_[+1]_59 chrIV:946121-946643 6.4e-07 39_[+1]_42 chrXVI:744080-744608 6.8e-07 32_[+1]_49 chrXV:274446-275012 1.3e-06 65_[+1]_16 chrVI:191238-191784 1.3e-06 61_[-1]_20 chrXVI:689375-689881 1.6e-06 39_[+1]_42 chrV:288162-288731 1.6e-06 56_[-1]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCVBSGGTTCGATYCCS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRTCVBSGGTTCGATYCCS width=19 seqs=87 chrIII:123365-123806 ( 52) GGTCCCGGGTTCGAGTCCC 1 chrIV:1256838-1257280 ( 9) GGGCCCGGGTTCGATTCCC 1 chrXVI:860170-860693 ( 40) GGCCCCCGGTTCGATTCCG 1 chrXVI:572044-572578 ( 50) GGCCCCCGGTTCGATTCCG 1 chrXV:226404-226914 ( 12) GGCCCCCGGTTCGATTCCG 1 chrX:531600-532239 ( 1) GGCCCCCGGTTCGATTCCG 1 chrX:396594-396947 ( 16) GGCCCCCGGTTCGATTCCG 1 chrXII:214739-215061 ( 43) GGTCATCGGTTCGATTCCG 1 chrXVI:819333-819911 ( 2) GATCAGCGGTTCGATCCCG 1 chrXIV:602111-602591 ( 56) GATCAGCGGTTCGATCCCG 1 chrXII:1051903-1052220 ( 70) GATCAGCGGTTCGATCCCG 1 chrV:550988-551595 ( 54) GATCAGCGGTTCGATCCCG 1 chrV:443068-443380 ( 38) GATCAGCGGTTCGATCCCG 1 chrII:197256-197860 ( 31) GATCAGCGGTTCGATCCCG 1 chrXVI:856731-857173 ( 44) GGTCTCCGGTTCGATTCCG 1 chrXIII:320990-321323 ( 51) GGTCTCCGGTTCGATTCCG 1 chrXI:219799-220142 ( 19) GGTCTCCGGTTCGATTCCG 1 chrVII:774146-774689 ( 26) GGTCTCCGGTTCGATTCCG 1 chrXVI:581798-582489 ( 13) GGTTAGGGGTTCGAGCCCC 1 chrXIII:480386-480825 ( 76) GGTTAGGGGTTCGAGCCCC 1 chrVII:185499-185913 ( 68) GGTTAGGGGTTCGAGCCCC 1 chrV:435558-436002 ( 32) GGTTAGGGGTTCGAGCCCC 1 chrIII:151034-151567 ( 44) GGTTAGGGGTTCGAGCCCC 1 chrVIII:475521-475907 ( 52) GGTCCCGAGTTCGATCCTC 1 chrXIV:96024-96521 ( 29) GGACACGGGTTCGATTCTC 1 chrVII:779406-779933 ( 40) GGACACGGGTTCGATTCTC 1 chrXIII:290538-291208 ( 21) AGACCGGGGTTCGACTCCC 1 chrXI:140651-141368 ( 69) AGACCGGGGTTCGACTCCC 1 chrVII:541713-542141 ( 16) AGACCGGGGTTCGACTCCC 1 chrV:487065-487606 ( 56) AGACCGGGGTTCGACTCCC 1 chrV:176892-177439 ( 27) AGACCGGGGTTCGACTCCC 1 chrIV:1016957-1017473 ( 52) AGACCGGGGTTCGACTCCC 1 chrXIII:195933-196297 ( 13) GGCCCTGGGTTCAATTCCC 1 chrVIII:134097-134703 ( 14) CAACCCCGGTTCGAATCCG 1 chrV:130820-131381 ( 42) CAACCCCGGTTCGAATCCG 1 chrIII:168112-168551 ( 30) CAACCCCGGTTCGAATCCG 1 chrII:350630-351135 ( 38) CAACCCCGGTTCGAATCCG 1 chrXIII:747767-748128 ( 5) GATTATGGGTTCGACCCCC 1 chrXIII:131584-132096 ( 45) GATTATGGGTTCGACCCCC 1 chrXI:162317-162763 ( 7) GATTATGGGTTCGACCCCC 1 chrX:374190-374854 ( 44) GATTATGGGTTCGACCCCC 1 chrX:355188-355717 ( 15) GATTATGGGTTCGACCCCC 1 chrXIII:586389-586908 ( 48) CGTCCCCAGTTCGATCCTG 1 chrXIII:420327-420911 ( 29) CGTCCCCAGTTCGATCCTG 1 chrXI:307932-308441 ( 18) CGTCCCCAGTTCGATCCTG 1 chrVII:823342-823731 ( 41) CGTCCCCAGTTCGATCCTG 1 chrV:438510-438958 ( 61) CGTCCCCAGTTCGATCCTG 1 chrVII:115332-115739 ( 70) TGTCAGGGGTTCGAGCCCC 1 chrIV:359356-359970 ( 31) TGTCAGGGGTTCGAGCCCC 1 chrXIV:560605-560867 ( 17) GATCATCGGTTCAAATCCG 1 chrXIV:104621-105046 ( 66) GATCATCGGTTCAAATCCG 1 chrVIII:115827-116411 ( 48) GATCATCGGTTCAAATCCG 1 chrIX:174892-175225 ( 67) GATCATCGGTTCAAATCCG 1 chrII:266189-266655 ( 50) GATCATCGGTTCAAATCCG 1 chrVII:700260-701196 ( 50) AGGCGCGGGTTCAAACCCC 1 chrXVI:622346-622829 ( 13) GGTCCTGTGTTCGATCCAC 1 chrXIII:463361-463882 ( 26) AGATCGGGGTTCAATTCCC 1 chrXIII:352083-352568 ( 67) GGTCCTGTGTTCGATCCAC 1 chrXII:426878-427457 ( 58) AGATCGGGGTTCAATTCCC 1 chrX:204550-205088 ( 9) AGATCGGGGTTCAATTCCC 1 chrVIII:358260-358764 ( 26) GGTCCTGTGTTCGATCCAC 1 chrVII:440488-441017 ( 24) GGTCCTGTGTTCGATCCAC 1 chrIV:1095131-1095660 ( 35) GGTCCTGTGTTCGATCCAC 1 chrII:405680-406334 ( 46) AGATCGGGGTTCAATTCCC 1 chrXVI:435655-436180 ( 36) GGTCCTTAGTTCGATCCTG 1 chrX:415676-416244 ( 31) GGTTGCAGGTTCAATTCCT 1 chrXII:975770-976178 ( 69) GATCGTGAGTTCAACCCTC 1 chrXII:374205-374644 ( 25) GATTCCAGGTTCAAGTCCT 1 chrXI:490766-491227 ( 66) GATTCCAGGTTCAAGTCCT 1 chrV:492211-492552 ( 31) GATTCCAGGTTCAAGTCCT 1 chrIV:619744-620254 ( 30) GATTCCAGGTTCAAGTCCT 1 chrIII:127582-127893 ( 74) GATCGTGAGTTCAACCCTC 1 chrX:523732-524339 ( 37) CCGCGCAGGTTCGAGTCCT 1 chrVIII:466814-467227 ( 63) GGTCGCTAGTTCAATTCTG 1 chrIV:437551-438084 ( 58) CCGCGCAGGTTCGAGTCCT 1 chrII:226981-227347 ( 14) CCGCGCAGGTTCGAGTCCT 1 chrIV:519660-519961 ( 38) CCGCGCGAGTTCGAACCTC 1 chrII:347401-347932 ( 42) CCGCGCGAGTTCGAACCTC 1 chrII:9376-9844 ( 78) CCGCGCGAGTTCGAACCTC 1 chrXV:976281-976717 ( 16) GGTCGAGAGTTCGAACCTC 1 chrXIII:837701-838329 ( 23) GATCGGGCGTTCGACTCGC 1 chrIV:946121-946643 ( 40) GATCGGGCGTTCGACTCGC 1 chrXVI:744080-744608 ( 33) GGTCGTTAGTTCAATTCTG 1 chrXV:274446-275012 ( 66) CTGCGCAGGTTCGAATCCT 1 chrVI:191238-191784 ( 62) CTGCGCAGGTTCGAATCCT 1 chrXVI:689375-689881 ( 40) CCGCGCTGGTTCAAATCCT 1 chrV:288162-288731 ( 57) CCGCGCTGGTTCAAATCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCVBSGGTTCGATYCCS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 42558 bayes= 9.94942 E= 5.6e-242 -126 15 169 -372 8 -109 152 -372 -72 -151 -51 100 -1309 199 -1309 -48 -2 115 15 -272 -472 123 55 -33 -140 81 130 -240 -82 -309 193 -240 -1309 -1309 235 -1309 -1309 -1309 -1309 172 -1309 -1309 -1309 172 -1309 235 -1309 -1309 -26 -1309 193 -1309 172 -1309 -1309 -1309 -55 -19 -19 56 -1309 111 -1309 92 -1309 235 -1309 -1309 -240 188 -309 -64 -1309 130 95 -114 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCVBSGGTTCGATYCCS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 87 E= 5.6e-242 0.126437 0.218391 0.632184 0.022989 0.321839 0.091954 0.563218 0.022989 0.183908 0.068966 0.137931 0.609195 0.000000 0.781609 0.000000 0.218391 0.298851 0.436782 0.218391 0.045977 0.011494 0.459770 0.287356 0.241379 0.114943 0.344828 0.482759 0.057471 0.172414 0.022989 0.747126 0.057471 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.252874 0.000000 0.747126 0.000000 1.000000 0.000000 0.000000 0.000000 0.206897 0.172414 0.172414 0.448276 0.000000 0.425287 0.000000 0.574713 0.000000 1.000000 0.000000 0.000000 0.057471 0.724138 0.022989 0.195402 0.000000 0.482759 0.379310 0.137931 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCVBSGGTTCGATYCCS MEME-1 regular expression -------------------------------------------------------------------------------- [GC][GA]T[CT][CAG][CGT][GC]GGTTC[GA]A[TA][TC]CC[CG] -------------------------------------------------------------------------------- Time 259.55 secs. ******************************************************************************** ******************************************************************************** MOTIF KTGGCCSAGTKGKTWRAGSS MEME-2 width = 20 sites = 58 llr = 950 E-value = 4.4e-154 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTGGCCSAGTKGKTWRAGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:2:::1a1::::1666::: pos.-specific C ::::864::11::2:11:65 probability G 3:8a:12:9:4a61:32945 matrix T 5a::232::94:454:11:: bits 2.3 * * 2.1 * * 1.9 * * 1.6 * ** ** * * Relative 1.4 **** *** * * * Entropy 1.2 **** *** ** *** (23.6 bits) 0.9 ***** *** ** *** 0.7 ***** *** ** ** *** 0.5 ****** ****** ** *** 0.2 ******************** 0.0 -------------------- Multilevel TTGGCCCAGTTGGTAAAGCG consensus G A TG G TCTGG GC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCSAGTKGKTWRAGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrXVI:880186-880574 - 14 5.18e-11 TAATGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:602111-602591 + 17 5.18e-11 CAATGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrV:443068-443380 - 76 5.18e-11 GTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIX:183323-183687 - 33 5.18e-11 TCCTGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIV:1150732-1151159 - 21 1.55e-10 TTCAGTCCCA GTGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrXII:167774-168244 - 41 1.85e-10 ATATGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:437551-438084 + 11 1.85e-10 GTAAGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrX:617686-618144 + 60 3.29e-10 CAATGGGAGT TTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXII:962801-963266 - 47 5.56e-10 CGACGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrX:424273-424720 - 44 5.56e-10 AGATGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrII:9376-9844 + 29 5.56e-10 TCGTGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXVI:769035-769496 - 62 2.17e-09 CTCATCCTTG TTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXII:875161-875611 + 46 2.17e-09 CTCATCCTTG TTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXI:578616-579354 + 36 2.17e-09 CTCATCCTTG TTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrVII:115332-115739 + 9 2.17e-09 CATCCTTG TTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXV:353903-354330 - 22 4.73e-09 TACTGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXIV:560605-560867 - 54 4.73e-09 ACGGGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXIV:104621-105046 + 28 4.73e-09 CTCAGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIX:174892-175225 + 29 4.73e-09 ACGAGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrII:266189-266655 + 12 4.73e-09 AACTGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXIV:632395-632804 + 56 6.77e-09 AAGTGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrIII:127582-127893 + 35 6.77e-09 AAATGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXVI:622346-622829 - 69 7.60e-09 ATATGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIV:374619-375079 + 76 7.60e-09 ATAAGCGGAC TTAGCTCAGTTGGGAGAGCG CCAGA chrXIII:352083-352568 + 11 7.60e-09 ATAAGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:237752-238132 - 22 7.60e-09 GTAAGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVII:440488-441017 - 80 7.60e-09 T TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVI:157848-158209 - 4 7.60e-09 AGAAGCGGAT TTAGCTCAGTTGGGAGAGCG CCA chrII:36241-36574 + 47 7.60e-09 GTAAGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIV:442764-443250 + 55 9.53e-09 AAGTGGTTGT TTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXII:628166-628635 + 39 9.53e-09 AAGTGGTTGT TTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:422890-423377 + 15 9.53e-09 AAGTGGTTGT TTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:205310-205781 + 32 9.53e-09 AAGTGGTTGT TTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXII:214739-215061 - 80 1.06e-08 C ATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrXI:83966-84442 + 60 1.31e-08 GTATGGAGGG TTGGCCGAGTGGTCTAATGC GGCAGACTTA chrXV:340183-340583 - 13 1.62e-08 TCTGTTCCTC GTGGCCCAATGGTCACGGCG TCTGGCTACG chrXI:490766-491227 + 28 1.62e-08 CTTGTTCCTC GTGGCCCAATGGTCACGGCG TCTGGCTACG chrX:233713-234125 + 76 1.62e-08 CTTGTTCCTC GTGGCCCAATGGTCACGGCG TCTGG chrV:492211-492552 - 68 1.62e-08 CCTATTCCTC GTGGCCCAATGGTCACGGCG TCTGGCTACG chrIV:619744-620254 - 67 1.62e-08 CTTGTTCCTC GTGGCCCAATGGTCACGGCG TCTGGCTACG chrXVI:856731-857173 + 6 1.79e-08 GGCGT GTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXII:656842-657211 - 5 1.79e-08 AATTGGGCGT GTGGCGTAGTCGGTAGCGCG CTCC chrVII:700260-701196 + 3 1.98e-08 CT CTGGCCGAGTGGTCTAAGGC GTCAGGTCGA chrV:435558-436002 - 69 5.81e-08 AAGAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrIII:151034-151567 - 81 5.81e-08 . TTGGCGCAATCGGTAGCGCG TATGACTCTT chrXIV:444208-445903 + 14 6.29e-08 TCCATTTGGA TTGGCGCAGTTGTTTCTGGC GGCGTAAAAC chrXIII:420327-420911 - 67 7.38e-08 AACAGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:307932-308441 - 56 7.38e-08 AAGTGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:823342-823731 + 2 7.38e-08 C GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:438510-438958 + 22 7.38e-08 ATTAGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrIV:1175590-1176062 + 59 1.52e-07 CAAAGCTTCA GTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrXVI:860170-860693 + 4 2.53e-07 CAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXVI:572044-572578 + 14 2.53e-07 CTTCGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:226404-226914 - 47 2.53e-07 TTCAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrX:396594-396947 - 51 2.53e-07 GTAAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIII:69-1024 - 51 3.96e-07 AGGGTAAGCG GTAGTGGAGTTGGATACGGG TAATTGGAGG chrXIV:546532-547644 + 62 8.67e-07 AATCGGGCGT GTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXIII:195933-196297 - 80 8.67e-07 T GTGGTCTAGTGGTATGATTC TCGCTTTGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCSAGTKGKTWRAGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:880186-880574 5.2e-11 13_[-2]_67 chrXIV:602111-602591 5.2e-11 16_[+2]_64 chrV:443068-443380 5.2e-11 75_[-2]_5 chrIX:183323-183687 5.2e-11 32_[-2]_48 chrIV:1150732-1151159 1.5e-10 20_[-2]_60 chrXII:167774-168244 1.9e-10 40_[-2]_40 chrIV:437551-438084 1.9e-10 10_[+2]_70 chrX:617686-618144 3.3e-10 59_[+2]_21 chrXII:962801-963266 5.6e-10 46_[-2]_34 chrX:424273-424720 5.6e-10 43_[-2]_37 chrII:9376-9844 5.6e-10 28_[+2]_52 chrXVI:769035-769496 2.2e-09 61_[-2]_19 chrXII:875161-875611 2.2e-09 45_[+2]_35 chrXI:578616-579354 2.2e-09 35_[+2]_45 chrVII:115332-115739 2.2e-09 8_[+2]_72 chrXV:353903-354330 4.7e-09 21_[-2]_59 chrXIV:560605-560867 4.7e-09 53_[-2]_27 chrXIV:104621-105046 4.7e-09 27_[+2]_53 chrIX:174892-175225 4.7e-09 28_[+2]_52 chrII:266189-266655 4.7e-09 11_[+2]_69 chrXIV:632395-632804 6.8e-09 55_[+2]_25 chrIII:127582-127893 6.8e-09 34_[+2]_46 chrXVI:622346-622829 7.6e-09 68_[-2]_12 chrXIV:374619-375079 7.6e-09 75_[+2]_5 chrXIII:352083-352568 7.6e-09 10_[+2]_70 chrVIII:237752-238132 7.6e-09 21_[-2]_59 chrVII:440488-441017 7.6e-09 79_[-2]_1 chrVI:157848-158209 7.6e-09 3_[-2]_77 chrII:36241-36574 7.6e-09 46_[+2]_34 chrXIV:442764-443250 9.5e-09 54_[+2]_26 chrXII:628166-628635 9.5e-09 38_[+2]_42 chrVII:422890-423377 9.5e-09 14_[+2]_66 chrVII:205310-205781 9.5e-09 31_[+2]_49 chrXII:214739-215061 1.1e-08 79_[-2]_1 chrXI:83966-84442 1.3e-08 59_[+2]_21 chrXV:340183-340583 1.6e-08 12_[-2]_68 chrXI:490766-491227 1.6e-08 27_[+2]_53 chrX:233713-234125 1.6e-08 75_[+2]_5 chrV:492211-492552 1.6e-08 67_[-2]_13 chrIV:619744-620254 1.6e-08 66_[-2]_14 chrXVI:856731-857173 1.8e-08 5_[+2]_75 chrXII:656842-657211 1.8e-08 4_[-2]_76 chrVII:700260-701196 2e-08 2_[+2]_78 chrV:435558-436002 5.8e-08 68_[-2]_12 chrIII:151034-151567 5.8e-08 80_[-2] chrXIV:444208-445903 6.3e-08 13_[+2]_67 chrXIII:420327-420911 7.4e-08 66_[-2]_14 chrXI:307932-308441 7.4e-08 55_[-2]_25 chrVII:823342-823731 7.4e-08 1_[+2]_79 chrV:438510-438958 7.4e-08 21_[+2]_59 chrIV:1175590-1176062 1.5e-07 58_[+2]_22 chrXVI:860170-860693 2.5e-07 3_[+2]_77 chrXVI:572044-572578 2.5e-07 13_[+2]_67 chrXV:226404-226914 2.5e-07 46_[-2]_34 chrX:396594-396947 2.5e-07 50_[-2]_30 chrIII:69-1024 4e-07 50_[-2]_30 chrXIV:546532-547644 8.7e-07 61_[+2]_19 chrXIII:195933-196297 8.7e-07 79_[-2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCSAGTKGKTWRAGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTGGCCSAGTKGKTWRAGSS width=20 seqs=58 chrXVI:880186-880574 ( 14) TTGGCCCAGTTGGTTAAGGC 1 chrXIV:602111-602591 ( 17) TTGGCCCAGTTGGTTAAGGC 1 chrV:443068-443380 ( 76) TTGGCCCAGTTGGTTAAGGC 1 chrIX:183323-183687 ( 33) TTGGCCCAGTTGGTTAAGGC 1 chrIV:1150732-1151159 ( 21) GTGGCCGAGTGGTTAAGGCG 1 chrXII:167774-168244 ( 41) TTGGCCGAGTGGTTAAGGCG 1 chrIV:437551-438084 ( 11) TTGGCCGAGTGGTTAAGGCG 1 chrX:617686-618144 ( 60) TTGGCCGAGTGGTTTAAGGC 1 chrXII:962801-963266 ( 47) TTGGCCGAGTGGTCTAAGGC 1 chrX:424273-424720 ( 44) TTGGCCGAGTGGTCTAAGGC 1 chrII:9376-9844 ( 29) TTGGCCGAGTGGTCTAAGGC 1 chrXVI:769035-769496 ( 62) TTAGCTCAGTTGGTAGAGCG 1 chrXII:875161-875611 ( 46) TTAGCTCAGTTGGTAGAGCG 1 chrXI:578616-579354 ( 36) TTAGCTCAGTTGGTAGAGCG 1 chrVII:115332-115739 ( 9) TTAGCTCAGTTGGTAGAGCG 1 chrXV:353903-354330 ( 22) ATGGCCAAGTTGGTAAGGCG 1 chrXIV:560605-560867 ( 54) ATGGCCAAGTTGGTAAGGCG 1 chrXIV:104621-105046 ( 28) ATGGCCAAGTTGGTAAGGCG 1 chrIX:174892-175225 ( 29) ATGGCCAAGTTGGTAAGGCG 1 chrII:266189-266655 ( 12) ATGGCCAAGTTGGTAAGGCG 1 chrXIV:632395-632804 ( 56) ATGGCCAAGTTGGTTAAGGC 1 chrIII:127582-127893 ( 35) ATGGCCAAGTTGGTTAAGGC 1 chrXVI:622346-622829 ( 69) TTAGCTCAGTTGGGAGAGCG 1 chrXIV:374619-375079 ( 76) TTAGCTCAGTTGGGAGAGCG 1 chrXIII:352083-352568 ( 11) TTAGCTCAGTTGGGAGAGCG 1 chrVIII:237752-238132 ( 22) TTAGCTCAGTTGGGAGAGCG 1 chrVII:440488-441017 ( 80) TTAGCTCAGTTGGGAGAGCG 1 chrVI:157848-158209 ( 4) TTAGCTCAGTTGGGAGAGCG 1 chrII:36241-36574 ( 47) TTAGCTCAGTTGGGAGAGCG 1 chrXIV:442764-443250 ( 55) TTGGCCGAGCGGTCTAAGGC 1 chrXII:628166-628635 ( 39) TTGGCCGAGCGGTCTAAGGC 1 chrVII:422890-423377 ( 15) TTGGCCGAGCGGTCTAAGGC 1 chrVII:205310-205781 ( 32) TTGGCCGAGCGGTCTAAGGC 1 chrXII:214739-215061 ( 80) ATGGCGCAGTTGGTAGCGCG 1 chrXI:83966-84442 ( 60) TTGGCCGAGTGGTCTAATGC 1 chrXV:340183-340583 ( 13) GTGGCCCAATGGTCACGGCG 1 chrXI:490766-491227 ( 28) GTGGCCCAATGGTCACGGCG 1 chrX:233713-234125 ( 76) GTGGCCCAATGGTCACGGCG 1 chrV:492211-492552 ( 68) GTGGCCCAATGGTCACGGCG 1 chrIV:619744-620254 ( 67) GTGGCCCAATGGTCACGGCG 1 chrXVI:856731-857173 ( 6) GTGGCGTAGTCGGTAGCGCG 1 chrXII:656842-657211 ( 5) GTGGCGTAGTCGGTAGCGCG 1 chrVII:700260-701196 ( 3) CTGGCCGAGTGGTCTAAGGC 1 chrV:435558-436002 ( 69) TTGGCGCAATCGGTAGCGCG 1 chrIII:151034-151567 ( 81) TTGGCGCAATCGGTAGCGCG 1 chrXIV:444208-445903 ( 14) TTGGCGCAGTTGTTTCTGGC 1 chrXIII:420327-420911 ( 67) GTGGTCTAGTCGGTTATGGC 1 chrXI:307932-308441 ( 56) GTGGTCTAGTCGGTTATGGC 1 chrVII:823342-823731 ( 2) GTGGTCTAGTCGGTTATGGC 1 chrV:438510-438958 ( 22) GTGGTCTAGTCGGTTATGGC 1 chrIV:1175590-1176062 ( 59) GTAGCTCAGTAGGAAGAGCG 1 chrXVI:860170-860693 ( 4) GTGGTTTAGTGGTAAAATCC 1 chrXVI:572044-572578 ( 14) GTGGTTTAGTGGTAAAATCC 1 chrXV:226404-226914 ( 47) GTGGTTTAGTGGTAAAATCC 1 chrX:396594-396947 ( 51) GTGGTTTAGTGGTAAAATCC 1 chrIII:69-1024 ( 51) GTAGTGGAGTTGGATACGGG 1 chrXIV:546532-547644 ( 62) GTGGTCTAGTGGTATGATTC 1 chrXIII:195933-196297 ( 80) GTGGTCTAGTGGTATGATTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCSAGTKGKTWRAGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 42039 bayes= 10.7498 E= 4.4e-154 -114 -351 81 72 -1250 -1250 -1250 172 -44 -1250 198 -1250 -1250 -1250 235 -1250 -1250 204 -1250 -68 -1250 162 -70 -14 -133 113 30 -55 172 -1250 -1250 -1250 -133 -1250 216 -1250 -1250 -151 -1250 162 -413 -51 107 51 -1250 -1250 235 -1250 -1250 -1250 153 51 -114 30 -70 72 95 -1250 -1250 45 91 -92 74 -1250 95 -92 19 -182 -1250 -1250 216 -133 -1250 158 95 -314 -1250 124 144 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCSAGTKGKTWRAGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 58 E= 4.4e-154 0.137931 0.017241 0.344828 0.500000 0.000000 0.000000 0.000000 1.000000 0.224138 0.000000 0.775862 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.810345 0.000000 0.189655 0.000000 0.603448 0.120690 0.275862 0.120690 0.431034 0.241379 0.206897 1.000000 0.000000 0.000000 0.000000 0.120690 0.000000 0.879310 0.000000 0.000000 0.068966 0.000000 0.931034 0.017241 0.137931 0.413793 0.431034 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.568966 0.431034 0.137931 0.241379 0.120690 0.500000 0.586207 0.000000 0.000000 0.413793 0.568966 0.103448 0.327586 0.000000 0.586207 0.103448 0.224138 0.086207 0.000000 0.000000 0.879310 0.120690 0.000000 0.586207 0.379310 0.034483 0.000000 0.465517 0.534483 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCSAGTKGKTWRAGSS MEME-2 regular expression -------------------------------------------------------------------------------- [TG]T[GA]GC[CT][CGT]AGT[TG]G[GT][TC][AT][AG][AG]G[CG][GC] -------------------------------------------------------------------------------- Time 497.69 secs. ******************************************************************************** ******************************************************************************** MOTIF AVAASBKVVAVTBMTARCCAYTAMACTAT MEME-3 width = 29 sites = 25 llr = 521 E-value = 3.2e-068 ******************************************************************************** -------------------------------------------------------------------------------- Motif AVAASBKVVAVTBMTARCCAYTAMACTAT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 84a8::13454:14:66::8::a38::a2 pos.-specific C :3::4423223:231::aa:5::6:a2:2 probability G 23:26353414242:24::2::::2:::: matrix T :::::231:2:82192::::5a::::8:5 bits 2.3 * * 2.1 ** * 1.9 ** * 1.6 * ** * * Relative 1.4 * * * ** ** * * Entropy 1.2 * *** * * *** ** **** (30.1 bits) 0.9 * *** * * ************ 0.7 * **** * * ************ 0.5 ******* * ** *************** 0.2 ********* ******************* 0.0 ----------------------------- Multilevel AAAAGCGAAAATGATAACCATTACACTAT consensus C GCGTGGCGGCC TG C AG C A sequence G T CCTC TG G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAASBKVVAVTBMTARCCAYTAMACTAT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrV:130820-131381 + 69 3.21e-14 TGTTCGGATC AAAACCGAAAGTGATAACCACTACACTAT AAA chrIV:802582-803008 + 23 3.21e-14 TGTCCGGATC AAAACCGAAAGTGATAACCACTACACTAT AGGACCGACA chrIII:168112-168551 + 57 3.21e-14 TGTCCGGATC AAAACCGAAAGTGATAACCACTACACTAT AGGACCAGGA chrII:350630-351135 - 1 3.21e-14 TGTCCGGATC AAAACCGAAAGTGATAACCACTACACTAT chrXII:426878-427457 - 21 2.22e-11 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTAT CACGGATAAG chrX:355188-355717 - 60 2.22e-11 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTAT CACGGAAGAA chrVII:544410-544911 + 4 2.22e-11 GCG ACAAGCGCCCATTCTGACCATTAAACTAT CACGGAAGAA chrVII:531413-531781 - 69 2.22e-11 GCG ACAAGCGCCCATTCTGACCATTAAACTAT CACGGAAGTA chrII:405680-406334 - 9 2.22e-11 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTAT CACGGAAG chrIX:197382-197798 - 58 6.23e-11 CTCCACGGTG AGAACGTGATGTGATAGCCGTTACACTAC ATCGGATTTG chrXV:110853-111209 + 18 7.86e-11 CCCCACCTTG GAAGGGTGGGATGATAACCACTACACTAA CCGCCCGGGT chrXIV:96024-96521 + 56 7.86e-11 CCCCACCTTG GAAGGGTGGGATGATAACCACTACACTAA CCGCCCATGT chrVII:779406-779933 - 3 7.86e-11 CCCCACCTTG GAAGGGTGGGATGATAACCACTACACTAA CC chrXVI:210053-210468 + 19 1.09e-10 CTCCACGGTG AAAGCGTGATGTGATAGCCGTTACACTAT ATCGGACAAT chrX:115804-116247 + 1 1.09e-10 . AAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATTAT chrIII:82377-82688 + 17 1.09e-10 CTCCACGGTG AAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATAAC chrXIII:747767-748128 + 32 6.02e-10 TCTTCTGATT AGAAGTCAGACGCGTTGCCATTACGCCAC GCGAGCTAGT chrXIII:131584-132096 + 72 6.02e-10 TCTTCTGATT AGAAGTCAGACGCGTTGCCATTACGCCAC chrXI:162317-162763 + 34 6.02e-10 TCTTCTGATT AGAAGTCAGACGCGTTGCCATTACGCCAC GCGAGCTAAT chrX:374190-374854 + 71 6.02e-10 TCTTCTGATT AGAAGTCAGACGCGTTGCCATTACGCCAC G chrVIII:466814-467227 - 26 3.17e-09 CCTTTGCATT ACAAGTGCAACGCTCTACCACTAAGCTAA GGAGGCTAAA chrVII:661541-661939 - 65 3.17e-09 TTGCATT ACAAGTGCAACGCTCTACCACTAAGCTAA GGAGGCAAAT chrIX:23424-25276 + 1 3.85e-09 . AGAAGCGGCACTAGTAGCGACAACACCAT TGTAGTTTAG chrIV:1256838-1257280 + 36 6.46e-09 CCCATGCTTG GGAAGCATGAATTCTAACCACTGAACCAC TTTCGCTAAG chrVIII:62518-63085 - 10 7.27e-09 TTCATCGGCC ACAACGATGTGTACTAACCACTATACTAA GATGGCATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAASBKVVAVTBMTARCCAYTAMACTAT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:130820-131381 3.2e-14 68_[+3]_3 chrIV:802582-803008 3.2e-14 22_[+3]_49 chrIII:168112-168551 3.2e-14 56_[+3]_15 chrII:350630-351135 3.2e-14 [-3]_71 chrXII:426878-427457 2.2e-11 20_[-3]_51 chrX:355188-355717 2.2e-11 59_[-3]_12 chrVII:544410-544911 2.2e-11 3_[+3]_68 chrVII:531413-531781 2.2e-11 68_[-3]_3 chrII:405680-406334 2.2e-11 8_[-3]_63 chrIX:197382-197798 6.2e-11 57_[-3]_14 chrXV:110853-111209 7.9e-11 17_[+3]_54 chrXIV:96024-96521 7.9e-11 55_[+3]_16 chrVII:779406-779933 7.9e-11 2_[-3]_69 chrXVI:210053-210468 1.1e-10 18_[+3]_53 chrX:115804-116247 1.1e-10 [+3]_71 chrIII:82377-82688 1.1e-10 16_[+3]_55 chrXIII:747767-748128 6e-10 31_[+3]_40 chrXIII:131584-132096 6e-10 71_[+3] chrXI:162317-162763 6e-10 33_[+3]_38 chrX:374190-374854 6e-10 70_[+3]_1 chrVIII:466814-467227 3.2e-09 25_[-3]_46 chrVII:661541-661939 3.2e-09 64_[-3]_7 chrIX:23424-25276 3.9e-09 [+3]_71 chrIV:1256838-1257280 6.5e-09 35_[+3]_36 chrVIII:62518-63085 7.3e-09 9_[-3]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAASBKVVAVTBMTARCCAYTAMACTAT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AVAASBKVVAVTBMTARCCAYTAMACTAT width=29 seqs=25 chrV:130820-131381 ( 69) AAAACCGAAAGTGATAACCACTACACTAT 1 chrIV:802582-803008 ( 23) AAAACCGAAAGTGATAACCACTACACTAT 1 chrIII:168112-168551 ( 57) AAAACCGAAAGTGATAACCACTACACTAT 1 chrII:350630-351135 ( 1) AAAACCGAAAGTGATAACCACTACACTAT 1 chrXII:426878-427457 ( 21) ACAAGCGCCCATTCTGACCATTAAACTAT 1 chrX:355188-355717 ( 60) ACAAGCGCCCATTCTGACCATTAAACTAT 1 chrVII:544410-544911 ( 4) ACAAGCGCCCATTCTGACCATTAAACTAT 1 chrVII:531413-531781 ( 69) ACAAGCGCCCATTCTGACCATTAAACTAT 1 chrII:405680-406334 ( 9) ACAAGCGCCCATTCTGACCATTAAACTAT 1 chrIX:197382-197798 ( 58) AGAACGTGATGTGATAGCCGTTACACTAC 1 chrXV:110853-111209 ( 18) GAAGGGTGGGATGATAACCACTACACTAA 1 chrXIV:96024-96521 ( 56) GAAGGGTGGGATGATAACCACTACACTAA 1 chrVII:779406-779933 ( 3) GAAGGGTGGGATGATAACCACTACACTAA 1 chrXVI:210053-210468 ( 19) AAAGCGTGATGTGATAGCCGTTACACTAT 1 chrX:115804-116247 ( 1) AAAGCGTGATGTGATAGCCGTTACACTAT 1 chrIII:82377-82688 ( 17) AAAGCGTGATGTGATAGCCGTTACACTAT 1 chrXIII:747767-748128 ( 32) AGAAGTCAGACGCGTTGCCATTACGCCAC 1 chrXIII:131584-132096 ( 72) AGAAGTCAGACGCGTTGCCATTACGCCAC 1 chrXI:162317-162763 ( 34) AGAAGTCAGACGCGTTGCCATTACGCCAC 1 chrX:374190-374854 ( 71) AGAAGTCAGACGCGTTGCCATTACGCCAC 1 chrVIII:466814-467227 ( 26) ACAAGTGCAACGCTCTACCACTAAGCTAA 1 chrVII:661541-661939 ( 65) ACAAGTGCAACGCTCTACCACTAAGCTAA 1 chrIX:23424-25276 ( 1) AGAAGCGGCACTAGTAGCGACAACACCAT 1 chrIV:1256838-1257280 ( 36) GGAAGCATGAATTCTAACCACTGAACCAC 1 chrVIII:62518-63085 ( 10) ACAACGATGTGTACTAACCACTATACTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAASBKVVAVTBMTARCCAYTAMACTAT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 37368 bayes= 10.2529 E= 3.2e-068 147 -1129 -30 -1129 40 70 51 -1129 172 -1129 -1129 -1129 132 -1129 29 -1129 -1129 87 170 -1129 -1129 116 70 -34 -192 -30 129 -12 8 51 70 -192 40 29 87 -1129 66 3 -71 -60 25 51 87 -1129 -1129 -1129 29 132 -192 29 116 -34 54 51 3 -192 -1129 -129 -1129 160 88 -1129 3 -34 108 -1129 87 -1129 -1129 235 -1129 -1129 -1129 229 -229 -1129 147 -1129 -30 -1129 -1129 129 -1129 78 -292 -1129 -1129 166 166 -1129 -229 -1129 8 170 -1129 -292 132 -1129 29 -1129 -1129 235 -1129 -1129 -1129 29 -1129 132 172 -1129 -1129 -1129 -34 29 -1129 78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAASBKVVAVTBMTARCCAYTAMACTAT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 25 E= 3.2e-068 0.840000 0.000000 0.160000 0.000000 0.400000 0.320000 0.280000 0.000000 1.000000 0.000000 0.000000 0.000000 0.760000 0.000000 0.240000 0.000000 0.000000 0.360000 0.640000 0.000000 0.000000 0.440000 0.320000 0.240000 0.080000 0.160000 0.480000 0.280000 0.320000 0.280000 0.320000 0.080000 0.400000 0.240000 0.360000 0.000000 0.480000 0.200000 0.120000 0.200000 0.360000 0.280000 0.360000 0.000000 0.000000 0.000000 0.240000 0.760000 0.080000 0.240000 0.440000 0.240000 0.440000 0.280000 0.200000 0.080000 0.000000 0.080000 0.000000 0.920000 0.560000 0.000000 0.200000 0.240000 0.640000 0.000000 0.360000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.960000 0.040000 0.000000 0.840000 0.000000 0.160000 0.000000 0.000000 0.480000 0.000000 0.520000 0.040000 0.000000 0.000000 0.960000 0.960000 0.000000 0.040000 0.000000 0.320000 0.640000 0.000000 0.040000 0.760000 0.000000 0.240000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.240000 0.000000 0.760000 1.000000 0.000000 0.000000 0.000000 0.240000 0.240000 0.000000 0.520000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AVAASBKVVAVTBMTARCCAYTAMACTAT MEME-3 regular expression -------------------------------------------------------------------------------- A[ACG]A[AG][GC][CGT][GT][AGC][AGC][ACT][AGC][TG][GCT][ACG]T[ATG][AG]CCA[TC]TA[CA][AG]C[TC]A[TAC] -------------------------------------------------------------------------------- Time 729.06 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71800-73694 2.58e-01 100 chrI:81848-82381 2.73e-01 100 chrI:138971-139799 9.98e-01 100 chrI:142193-143433 3.69e-01 100 chrI:166168-166650 4.10e-01 100 chrI:180948-181552 1.21e-02 25_[+1(9.53e-06)]_56 chrI:182091-183233 9.06e-01 100 chrII:9376-9844 4.67e-10 28_[+2(5.56e-10)]_29_[+1(4.20e-07)]_\ 4 chrII:36241-36574 3.15e-05 46_[+2(7.60e-09)]_34 chrII:44744-45348 3.66e-01 100 chrII:60773-61957 5.40e-01 100 chrII:88953-90029 6.25e-01 100 chrII:165067-165431 4.16e-02 100 chrII:167609-169619 1.27e-01 100 chrII:181302-182002 2.92e-01 100 chrII:197256-197860 8.11e-07 30_[+1(7.36e-10)]_51 chrII:226981-227347 3.74e-04 13_[+1(3.37e-07)]_68 chrII:266189-266655 5.91e-10 11_[+2(4.73e-09)]_18_[+1(2.84e-08)]_\ 32 chrII:326409-327093 8.79e-01 100 chrII:332300-332761 5.53e-01 100 chrII:347401-347932 8.63e-04 41_[+1(4.20e-07)]_40 chrII:350630-351135 1.39e-15 [-3(3.21e-14)]_8_[+1(8.75e-09)]_44 chrII:405680-406334 3.15e-13 8_[-3(2.22e-11)]_8_[+1(9.53e-08)]_\ 36 chrII:408652-408894 2.88e-01 100 chrII:415515-416450 3.21e-01 100 chrII:476815-477740 3.00e-01 100 chrII:592881-593440 9.31e-01 100 chrII:602621-607132 9.18e-01 100 chrII:642840-643320 1.23e-01 100 chrII:644751-645419 5.04e-01 100 chrIII:69-1024 3.72e-04 50_[-2(3.96e-07)]_30 chrIII:57352-58523 1.83e-01 100 chrIII:82377-82688 3.56e-07 16_[+3(1.09e-10)]_55 chrIII:90859-91105 1.19e-02 11_[+1(9.53e-06)]_70 chrIII:123365-123806 1.10e-07 51_[-1(4.15e-12)]_30 chrIII:127582-127893 6.62e-09 34_[+2(6.77e-09)]_19_[+1(2.67e-07)]_\ 8 chrIII:137797-138985 2.67e-01 100 chrIII:141965-142980 6.23e-02 100 chrIII:149745-150163 5.75e-03 100 chrIII:151034-151567 1.28e-11 43_[-1(1.63e-09)]_18_[-2(5.81e-08)] chrIII:163456-163875 1.47e-01 100 chrIII:168112-168551 9.77e-17 29_[-1(8.75e-09)]_8_[+3(3.21e-14)]_\ 15 chrIII:177093-178802 8.43e-01 100 chrIII:227754-228494 4.00e-01 100 chrIII:295301-296012 8.49e-01 100 chrIII:315620-316594 5.84e-01 100 chrIV:8-339 6.85e-02 100 chrIV:83434-84136 5.50e-01 100 chrIV:117137-117775 6.44e-02 100 chrIV:129796-131101 3.40e-01 100 chrIV:216549-217995 3.06e-02 100 chrIV:221699-222396 5.97e-01 100 chrIV:229471-230465 5.89e-01 100 chrIV:306430-308411 2.83e-01 100 chrIV:321642-321979 3.97e-01 100 chrIV:340642-341695 2.35e-01 100 chrIV:357813-358516 3.74e-03 23_[+3(1.07e-05)]_48 chrIV:359356-359970 4.34e-05 30_[+1(2.03e-08)]_51 chrIV:360293-360731 4.63e-01 100 chrIV:381976-384766 9.49e-03 100 chrIV:409675-410829 6.34e-01 100 chrIV:411071-411641 9.08e-01 100 chrIV:434013-434859 9.86e-01 100 chrIV:437551-438084 1.77e-10 10_[+2(1.85e-10)]_27_[+1(3.37e-07)]_\ 24 chrIV:465185-465633 6.91e-02 100 chrIV:488424-489118 4.59e-02 80_[+1(1.31e-05)]_1 chrIV:490233-491280 5.98e-01 100 chrIV:491464-492606 6.37e-01 100 chrIV:519660-519961 8.63e-04 37_[+1(4.20e-07)]_44 chrIV:520773-521116 2.58e-01 100 chrIV:538943-539269 1.07e-01 100 chrIV:568696-569500 6.47e-01 100 chrIV:578809-580692 2.92e-01 100 chrIV:600763-602570 1.77e-01 100 chrIV:619744-620254 2.57e-10 29_[-1(2.67e-07)]_18_[-2(1.62e-08)]_\ 14 chrIV:644863-645370 2.43e-01 100 chrIV:667659-668212 4.73e-01 100 chrIV:802582-803008 7.57e-12 22_[+3(3.21e-14)]_49 chrIV:834254-835558 8.55e-01 100 chrIV:835756-838006 5.01e-01 100 chrIV:884265-884588 4.53e-01 100 chrIV:914053-915306 8.34e-01 100 chrIV:946121-946643 3.79e-03 39_[+1(6.39e-07)]_42 chrIV:980610-981168 5.03e-01 100 chrIV:992696-993354 9.99e-01 100 chrIV:1013750-1013980 1.68e-01 100 chrIV:1016957-1017473 6.66e-05 51_[-1(5.18e-09)]_30 chrIV:1075092-1075757 8.92e-01 100 chrIV:1095131-1095660 3.23e-05 34_[-1(9.53e-08)]_47 chrIV:1150732-1151159 4.25e-07 20_[-2(1.55e-10)]_60 chrIV:1161922-1164577 3.51e-01 100 chrIV:1175590-1176062 3.06e-04 58_[+2(1.52e-07)]_22 chrIV:1201560-1202130 3.45e-02 100 chrIV:1256838-1257280 2.01e-14 8_[-1(2.75e-11)]_8_[+3(6.46e-09)]_\ 36 chrIV:1299963-1300139 8.50e-01 100 chrIV:1300420-1301352 7.47e-01 100 chrIV:1305205-1305808 8.74e-01 100 chrIV:1351856-1353553 1.00e+00 100 chrIV:1355721-1356026 9.22e-01 100 chrIV:1359190-1360876 9.51e-01 100 chrIV:1401096-1403466 5.82e-01 100 chrIV:1450761-1451238 7.58e-01 100 chrIV:1461469-1461840 1.73e-01 100 chrIV:1489359-1490816 8.50e-01 100 chrIX:23424-25276 3.97e-05 [+3(3.85e-09)]_71 chrIX:68247-68868 2.30e-01 100 chrIX:98541-99323 3.96e-01 100 chrIX:99627-100064 4.95e-01 100 chrIX:131219-132861 5.79e-01 100 chrIX:174892-175225 6.54e-10 28_[+2(4.73e-09)]_18_[+1(2.84e-08)]_\ 15 chrIX:183323-183687 3.90e-07 32_[-2(5.18e-11)]_48 chrIX:197382-197798 1.25e-06 57_[-3(6.23e-11)]_14 chrIX:210508-211426 5.39e-01 100 chrIX:212714-214600 1.17e-01 100 chrIX:247892-249347 2.98e-01 100 chrIX:254227-254573 3.58e-01 100 chrIX:255049-256952 2.90e-01 100 chrIX:257329-257992 8.45e-01 100 chrIX:299568-300489 4.59e-01 100 chrIX:315853-316608 9.99e-01 100 chrIX:316884-318472 7.80e-02 100 chrIX:322495-324390 3.54e-01 100 chrIX:325750-326245 3.83e-01 100 chrIX:336002-336632 2.34e-01 100 chrIX:370211-370842 6.35e-01 100 chrV:53501-53929 4.80e-01 100 chrV:61099-62159 7.13e-01 100 chrV:67164-69372 6.54e-01 100 chrV:85078-86983 8.34e-01 100 chrV:99859-100288 9.52e-01 100 chrV:117208-118304 4.28e-01 100 chrV:130820-131381 1.39e-15 41_[-1(8.75e-09)]_8_[+3(3.21e-14)]_\ 3 chrV:135190-136118 8.14e-01 100 chrV:138470-139811 1.57e-01 100 chrV:140186-141296 5.84e-01 100 chrV:176892-177439 2.64e-05 26_[+1(5.18e-09)]_55 chrV:249790-250510 5.17e-02 100 chrV:270345-270860 5.08e-01 100 chrV:288162-288731 4.95e-03 56_[-1(1.58e-06)]_25 chrV:305767-307396 4.63e-02 100 chrV:311667-312291 9.41e-01 100 chrV:354672-355776 4.57e-01 100 chrV:362189-363293 3.33e-01 100 chrV:395586-398136 2.46e-01 100 chrV:422812-423526 8.09e-01 100 chrV:431025-431955 9.03e-01 100 chrV:434401-434976 2.96e-01 100 chrV:435558-436002 1.28e-11 31_[-1(1.63e-09)]_18_[-2(5.81e-08)]_\ 12 chrV:438510-438958 8.28e-09 21_[+2(7.38e-08)]_19_[+1(1.61e-08)]_\ 21 chrV:441779-442709 3.55e-01 100 chrV:443068-443380 1.63e-13 37_[-1(7.36e-10)]_19_[-2(5.18e-11)]_\ 5 chrV:469150-470018 9.84e-01 100 chrV:487065-487606 3.23e-05 55_[-1(5.18e-09)]_26 chrV:492211-492552 2.57e-10 30_[-1(2.67e-07)]_18_[-2(1.62e-08)]_\ 13 chrV:550988-551595 8.11e-07 53_[-1(7.36e-10)]_28 chrVI:64861-65373 7.55e-01 100 chrVI:95472-95911 4.39e-02 15_[-3(8.70e-05)]_56 chrVI:101162-102537 7.40e-01 100 chrVI:137221-137696 1.00e+00 100 chrVI:157848-158209 4.07e-05 3_[-2(7.60e-09)]_77 chrVI:162020-162385 2.25e-02 19_[+3(2.77e-05)]_52 chrVI:167240-167640 3.38e-02 52_[+2(5.39e-05)]_28 chrVI:180651-181247 4.45e-01 100 chrVI:191238-191784 1.16e-03 61_[-1(1.27e-06)]_20 chrVI:210435-211726 1.01e-02 6_[+2(4.07e-05)]_74 chrVI:220126-222151 3.88e-01 100 chrVI:222599-224152 6.86e-02 100 chrVI:224347-225346 5.00e-01 100 chrVI:226360-227268 6.17e-02 100 chrVII:110290-110781 4.08e-01 100 chrVII:115332-115739 2.16e-12 8_[+2(2.17e-09)]_41_[+1(2.03e-08)]_\ 12 chrVII:122091-123287 8.67e-01 100 chrVII:148183-148612 4.12e-01 100 chrVII:149080-149567 9.85e-01 100 chrVII:185499-185913 1.09e-06 67_[-1(1.63e-09)]_14 chrVII:205310-205781 8.28e-05 31_[+2(9.53e-09)]_49 chrVII:254120-254762 3.16e-01 100 chrVII:277015-278690 5.78e-02 41_[+3(9.80e-05)]_30 chrVII:287151-287906 4.34e-01 100 chrVII:310446-312520 5.33e-01 100 chrVII:319242-320176 9.14e-01 100 chrVII:328414-329340 9.84e-01 100 chrVII:364893-366662 9.93e-01 100 chrVII:370414-370667 9.68e-01 100 chrVII:370861-371549 2.94e-01 100 chrVII:397966-398294 6.99e-01 100 chrVII:405460-406329 7.77e-01 100 chrVII:411595-412590 5.21e-01 100 chrVII:422890-423377 8.28e-05 14_[+2(9.53e-09)]_66 chrVII:437468-439920 7.82e-01 100 chrVII:440488-441017 7.89e-10 23_[-1(9.53e-08)]_37_[-2(7.60e-09)]_\ 1 chrVII:479544-482727 4.72e-01 100 chrVII:483356-483717 7.46e-01 100 chrVII:519404-520541 2.71e-02 100 chrVII:531413-531781 2.60e-10 68_[-3(2.22e-11)]_3 chrVII:533846-535198 9.58e-01 100 chrVII:541713-542141 1.77e-05 15_[+1(5.18e-09)]_66 chrVII:544410-544911 8.35e-09 3_[+3(2.22e-11)]_68 chrVII:555177-555844 4.34e-01 100 chrVII:557771-557978 9.39e-02 100 chrVII:609335-610159 8.47e-01 100 chrVII:648784-649386 3.93e-01 100 chrVII:661541-661939 1.60e-06 64_[-3(3.17e-09)]_7 chrVII:700260-701196 2.23e-09 2_[+2(1.98e-08)]_27_[+1(3.52e-08)]_\ 32 chrVII:706718-707184 9.30e-01 100 chrVII:726314-728191 6.94e-01 100 chrVII:730962-732150 4.19e-01 100 chrVII:736174-736957 9.99e-01 100 chrVII:738913-739594 5.63e-01 100 chrVII:774146-774689 1.42e-05 25_[+1(1.40e-09)]_56 chrVII:779406-779933 1.79e-13 2_[-3(7.86e-11)]_8_[+1(2.56e-09)]_\ 42 chrVII:788018-788764 5.63e-01 100 chrVII:794090-795468 7.04e-01 100 chrVII:806249-807298 7.55e-02 45_[-2(5.13e-05)]_35 chrVII:823342-823731 6.76e-09 1_[+2(7.38e-08)]_19_[+1(1.61e-08)]_\ 41 chrVII:828390-828976 5.95e-01 100 chrVII:845415-846156 9.89e-01 100 chrVII:846978-847953 2.45e-01 100 chrVII:856730-857684 4.69e-01 100 chrVII:876169-879040 8.39e-01 100 chrVII:882778-884078 2.19e-01 100 chrVII:902659-903125 3.22e-01 100 chrVII:930741-931661 9.73e-01 100 chrVII:970719-971964 8.59e-01 100 chrVII:972191-973626 3.92e-03 39_[+3(2.31e-05)]_32 chrVII:1000322-1000633 5.19e-01 100 chrVII:1003888-1004405 8.43e-01 100 chrVIII:34551-36111 1.47e-01 100 chrVIII:62518-63085 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chrX:523732-524339 2.19e-04 36_[-1(3.37e-07)]_45 chrX:531600-532239 7.48e-06 [+1(2.95e-10)]_81 chrX:538043-538748 5.56e-01 100 chrX:540831-542084 1.49e-01 100 chrX:542492-543264 7.61e-01 100 chrX:607801-608191 4.40e-01 100 chrX:617686-618144 9.97e-07 59_[+2(3.29e-10)]_21 chrX:651043-651634 1.00e+00 100 chrX:651907-653067 5.14e-01 100 chrX:703252-703739 3.07e-01 100 chrX:745015-745748 2.70e-01 100 chrXI:46710-46989 6.00e-01 100 chrXI:66549-68381 2.54e-02 100 chrXI:74389-75394 8.98e-01 100 chrXI:83966-84442 2.49e-05 59_[+2(1.31e-08)]_21 chrXI:98857-100064 6.59e-01 100 chrXI:107450-110136 4.17e-01 100 chrXI:140651-141368 1.53e-05 68_[-1(5.18e-09)]_13 chrXI:158025-158648 4.96e-01 100 chrXI:162317-162763 1.98e-11 6_[-1(1.27e-08)]_8_[+3(6.02e-10)]_\ 38 chrXI:202486-203301 5.07e-01 100 chrXI:219799-220142 1.03e-05 18_[+1(1.40e-09)]_63 chrXI:258082-259954 9.60e-01 100 chrXI:261132-261847 7.94e-01 100 chrXI:283013-284487 5.16e-01 100 chrXI:302695-303218 7.25e-03 17_[-3(9.27e-06)]_54 chrXI:307932-308441 7.83e-09 17_[-1(1.61e-08)]_19_[-2(7.38e-08)]_\ 25 chrXI:313151-314007 5.81e-01 100 chrXI:326424-327507 3.85e-01 100 chrXI:334342-334979 4.66e-01 100 chrXI:379685-380375 9.27e-02 100 chrXI:382162-382467 6.11e-01 100 chrXI:430807-432301 9.16e-01 100 chrXI:457988-458972 9.92e-01 100 chrXI:490766-491227 2.57e-10 27_[+2(1.62e-08)]_18_[+1(2.67e-07)]_\ 16 chrXI:512046-513572 3.44e-01 100 chrXI:517783-518068 9.76e-01 100 chrXI:518850-520623 2.80e-02 100 chrXI:558452-559440 2.24e-01 100 chrXI:559694-559944 8.27e-01 100 chrXI:578616-579354 1.96e-07 35_[+2(2.17e-09)]_45 chrXI:617752-618540 2.57e-01 100 chrXI:618722-619292 3.33e-03 26_[-2(2.00e-05)]_54 chrXII:11231-11522 1.96e-01 100 chrXII:47684-48397 1.17e-01 100 chrXII:48690-49137 4.07e-01 100 chrXII:92329-93083 1.14e-01 100 chrXII:167774-168244 1.92e-07 40_[-2(1.85e-10)]_40 chrXII:198649-199717 8.61e-02 100 chrXII:201671-202681 1.41e-01 100 chrXII:214739-215061 1.33e-12 42_[-1(3.56e-10)]_18_[-2(1.06e-08)]_\ 1 chrXII:231727-234209 1.10e-01 100 chrXII:234586-234814 5.75e-01 100 chrXII:235055-235333 6.26e-01 100 chrXII:241613-242011 3.93e-01 100 chrXII:282591-284123 7.10e-01 100 chrXII:366032-366545 2.12e-01 100 chrXII:369669-370964 2.58e-01 100 chrXII:374205-374644 6.20e-04 24_[+1(2.67e-07)]_57 chrXII:424116-424566 4.91e-01 100 chrXII:426878-427457 3.15e-13 20_[-3(2.22e-11)]_8_[+1(9.53e-08)]_\ 24 chrXII:440452-441278 6.05e-01 100 chrXII:448000-448854 4.11e-01 100 chrXII:459591-460745 6.56e-01 100 chrXII:498483-500268 2.22e-01 100 chrXII:515303-517060 2.83e-02 100 chrXII:521642-522451 6.13e-01 100 chrXII:592272-592819 3.81e-03 33_[-1(2.86e-06)]_48 chrXII:605134-606041 9.85e-01 100 chrXII:628166-628635 8.28e-05 38_[+2(9.53e-09)]_42 chrXII:636806-639951 7.72e-01 100 chrXII:656842-657211 1.10e-04 4_[-2(1.79e-08)]_76 chrXII:673828-674606 1.44e-01 100 chrXII:713152-713610 9.05e-01 100 chrXII:731058-732339 9.60e-01 100 chrXII:734592-734934 8.02e-01 100 chrXII:780487-781878 8.95e-01 100 chrXII:783891-784521 9.49e-01 100 chrXII:793707-795947 7.47e-01 100 chrXII:796332-797776 7.52e-01 100 chrXII:805421-805615 8.26e-01 100 chrXII:805835-806836 5.46e-01 100 chrXII:818504-819216 7.25e-01 100 chrXII:837651-839297 2.64e-02 100 chrXII:875161-875611 1.96e-07 45_[+2(2.17e-09)]_35 chrXII:897687-899003 9.35e-02 100 chrXII:903194-904446 4.02e-02 47_[+2(8.69e-05)]_33 chrXII:921716-924333 2.20e-01 100 chrXII:929829-931847 1.98e-01 100 chrXII:932084-932528 9.33e-01 100 chrXII:951008-953894 6.72e-01 100 chrXII:962801-963266 6.29e-07 46_[-2(5.56e-10)]_34 chrXII:975770-976178 1.71e-04 68_[-1(2.67e-07)]_13 chrXII:1011734-1013254 1.69e-02 100 chrXII:1018118-1019740 7.52e-01 100 chrXII:1028201-1028564 7.67e-01 100 chrXII:1029998-1030343 1.84e-01 100 chrXII:1051903-1052220 2.45e-06 69_[-1(7.36e-10)]_12 chrXIII:91390-92108 1.40e-01 100 chrXIII:131584-132096 1.98e-11 44_[-1(1.27e-08)]_8_[+3(6.02e-10)] chrXIII:145924-146274 2.43e-01 100 chrXIII:168219-169271 5.62e-01 100 chrXIII:195933-196297 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chrXIII:586389-586908 1.18e-04 47_[-1(1.61e-08)]_34 chrXIII:652444-652982 8.16e-01 100 chrXIII:731868-733580 6.10e-02 100 chrXIII:747767-748128 1.98e-11 4_[-1(1.27e-08)]_8_[+3(6.02e-10)]_\ 40 chrXIII:753031-755759 1.54e-02 100 chrXIII:768188-768444 9.40e-01 100 chrXIII:807640-808542 9.78e-01 100 chrXIII:837701-838329 3.96e-03 22_[+1(6.39e-07)]_59 chrXIII:859304-860835 7.78e-02 100 chrXIII:872556-872950 1.66e-01 100 chrXIII:887049-888733 4.87e-01 100 chrXIV:63070-64377 6.47e-01 100 chrXIV:87393-87794 3.19e-01 100 chrXIV:96024-96521 1.79e-13 28_[-1(2.56e-09)]_8_[+3(7.86e-11)]_\ 16 chrXIV:102569-103774 3.37e-01 100 chrXIV:104621-105046 9.30e-10 27_[+2(4.73e-09)]_18_[+1(2.84e-08)]_\ 16 chrXIV:241354-242372 4.16e-01 100 chrXIV:302658-303978 8.26e-02 100 chrXIV:330502-331645 1.57e-01 100 chrXIV:374619-375079 8.44e-05 75_[+2(7.60e-09)]_5 chrXIV:442764-443250 7.41e-05 54_[+2(9.53e-09)]_26 chrXIV:444208-445903 2.54e-04 13_[+2(6.29e-08)]_67 chrXIV:495198-495785 4.14e-01 100 chrXIV:546532-547644 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chrXV:253784-254667 5.93e-01 100 chrXV:274446-275012 1.16e-03 65_[+1(1.27e-06)]_16 chrXV:282001-282802 9.03e-01 100 chrXV:287198-288411 1.30e-01 100 chrXV:300867-301641 9.95e-01 100 chrXV:340183-340583 2.30e-06 12_[-2(1.62e-08)]_68 chrXV:353903-354330 2.21e-05 21_[-2(4.73e-09)]_59 chrXV:438452-439176 8.26e-01 100 chrXV:444639-446212 7.64e-01 100 chrXV:464286-464951 1.00e+00 100 chrXV:504808-505506 2.59e-01 100 chrXV:506115-506714 4.98e-02 100 chrXV:571752-572504 9.26e-01 100 chrXV:594309-594664 9.48e-01 100 chrXV:619000-623329 3.97e-01 100 chrXV:639123-640208 5.68e-01 100 chrXV:663011-664099 7.59e-01 100 chrXV:678660-679174 1.17e-01 2_[-2(7.89e-05)]_78 chrXV:710129-710687 2.45e-01 100 chrXV:723033-724785 9.35e-01 100 chrXV:779662-780982 3.46e-01 100 chrXV:796758-798768 3.31e-01 100 chrXV:832348-832742 8.91e-01 100 chrXV:853819-854797 9.84e-01 100 chrXV:866464-868129 9.39e-01 100 chrXV:881215-882406 8.71e-01 100 chrXV:896943-898016 1.23e-01 53_[-2(7.70e-05)]_27 chrXV:899830-901658 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chrXVI:622346-622829 7.89e-10 12_[-1(9.53e-08)]_37_[-2(7.60e-09)]_\ 12 chrXVI:642287-643357 7.08e-01 100 chrXVI:679016-679383 7.71e-01 100 chrXVI:689375-689881 6.62e-04 39_[+1(1.58e-06)]_42 chrXVI:699808-700395 6.14e-01 100 chrXVI:731644-732772 7.73e-01 100 chrXVI:744080-744608 1.31e-04 32_[+1(6.83e-07)]_49 chrXVI:769035-769496 2.16e-12 1_[-1(2.03e-08)]_41_[-2(2.17e-09)]_\ 19 chrXVI:775646-776089 9.99e-01 100 chrXVI:794289-794836 9.73e-01 100 chrXVI:810583-811277 4.24e-01 100 chrXVI:819333-819911 9.60e-06 1_[+1(7.36e-10)]_80 chrXVI:856731-857173 4.00e-12 5_[+2(1.79e-08)]_18_[+1(1.40e-09)]_\ 38 chrXVI:860170-860693 2.62e-11 3_[+2(2.53e-07)]_16_[+1(2.95e-10)]_\ 42 chrXVI:879788-880005 9.52e-01 100 chrXVI:880186-880574 2.50e-07 13_[-2(5.18e-11)]_67 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************