Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.022958 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.059551 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.079404 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.014207 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.065555 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background Finished invoke: name: bg status: 0 time: 0.018007 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 1078.751204 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 38.890608 Invoking: centrimo -seqlen 491 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.129227 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.454385 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background -primary GCBCHMDMSSGGRRTCGAACCSSGGAYSYY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.41848 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background -primary SSCTYWWMCMACTVRGCYAM /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.373835 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background -primary TGTARYGGYTATCACWTCACGYTTTSAYCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.288504 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background -primary AAAAAAAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.386239 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background -primary ACCACY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.365918 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background -primary GAAGAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.371161 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background -primary CGGTASC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.224191 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background -primary TGGGCSAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.206364 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background --motif GCBCHMDMSSGGRRTCGAACCSSGGAYSYY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa Finished invoke: name: fimo1 status: 0 time: 0.479517 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background --motif SSCTYWWMCMACTVRGCYAM /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa Finished invoke: name: fimo2 status: 0 time: 0.455014 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background --motif TGTARYGGYTATCACWTCACGYTTTSAYCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa Finished invoke: name: fimo3 status: 0 time: 0.475923 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background --motif AAAAAAAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa Finished invoke: name: fimo4 status: 0 time: 0.364906 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background --motif ACCACY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa Finished invoke: name: fimo5 status: 0 time: 0.332259 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background --motif GAAGAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa Finished invoke: name: fimo6 status: 0 time: 0.329595 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background --motif CGGTASC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa Finished invoke: name: fimo7 status: 0 time: 0.339433 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background --motif TGGGCSAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/AWRI1631--MIG1.fa Finished invoke: name: fimo8 status: 0 time: 0.362187 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/summary.tsv Finished invoke: name: summary status: 0 time: 0.148337 Done