******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:347403-347905 1.0000 100 chrVIII:134097-134839 1.0000 100 chrXIV:771815-772453 1.0000 100 chrVII:167923-169285 1.0000 100 chrXI:126198-127595 1.0000 100 chrI:151345-151837 1.0000 100 chrIV:1278614-1279074 1.0000 100 chrXVI:821639-822318 1.0000 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chrXIII:768193-768425 1.0000 100 chrXV:1027725-1029466 1.0000 100 chrXII:903863-904860 1.0000 100 chrXV:795823-799068 1.0000 100 chrXV:832211-832841 1.0000 100 chrX:26180-26280 1.0000 100 chrXVI:699658-700672 1.0000 100 chrIX:96819-97730 1.0000 100 chrIII:82196-82696 1.0000 100 chrXIV:61547-62981 1.0000 100 chrVII:437181-438426 1.0000 100 chrXI:551878-552828 1.0000 100 chrXI:109210-110640 1.0000 100 chrXV:594313-594649 1.0000 100 chrIV:915090-916343 1.0000 100 chrXIV:102592-103681 1.0000 100 chrVII:541726-542157 1.0000 100 chrVII:205338-206185 1.0000 100 chrXII:366052-366583 1.0000 100 chrXIII:131621-132087 1.0000 100 chrXIII:753000-754221 1.0000 100 chrX:542755-542855 1.0000 100 chrXI:83968-84459 1.0000 100 chrVII:610509-611577 1.0000 100 chrVII:1057169-1058628 1.0000 100 chrIV:884278-884579 1.0000 100 chrXIII:878555-880207 1.0000 100 chrIV:1328757-1330961 1.0000 100 chrIII:177058-178785 1.0000 100 chrVII:479134-482976 1.0000 100 chrX:651923-652023 1.0000 100 chrIV:644891-645372 1.0000 100 chrIX:325758-326237 1.0000 100 chrXIV:560264-560815 1.0000 100 chrXV:968077-968656 1.0000 100 chrII:644947-645417 1.0000 100 chrIV:1150722-1151168 1.0000 100 chrVII:987376-987659 1.0000 100 chrXI:162127-162732 1.0000 100 chrII:680252-682250 1.0000 100 chrII:333307-334133 1.0000 100 chrXVI:451663-453197 1.0000 100 chrXV:841504-842171 1.0000 100 chrVIII:125961-126270 1.0000 100 chrII:256152-257742 1.0000 100 chrXVI:879950-880570 1.0000 100 chrXI:513121-513617 1.0000 100 chrVII:798570-800144 1.0000 100 chrXVI:642038-643608 1.0000 100 chrVII:1050256-1050637 1.0000 100 chrXII:515297-517029 1.0000 100 chrXIV:374668-375103 1.0000 100 chrIV:308574-310188 1.0000 100 chrX:360132-360232 1.0000 100 chrXIII:362948-363376 1.0000 100 chrIX:183313-183688 1.0000 100 chrVIII:555087-555445 1.0000 100 chrXV:778189-779459 1.0000 100 chrXIII:892859-894946 1.0000 100 chrIV:1461375-1461830 1.0000 100 chrIV:720595-721623 1.0000 100 chrXII:231946-234258 1.0000 100 chrXIII:379063-379598 1.0000 100 chrVIII:190687-192601 1.0000 100 chrX:233730-233830 1.0000 100 chrVIII:381434-382522 1.0000 100 chrXI:312832-314027 1.0000 100 chrI:169475-171036 1.0000 100 chrXI:382715-384736 1.0000 100 chrXV:259352-259970 1.0000 100 chrXI:355366-356485 1.0000 100 chrII:197296-197830 1.0000 100 chrII:36251-36612 1.0000 100 chrIII:295326-296037 1.0000 100 chrV:311688-312276 1.0000 100 chrI:142178-143684 1.0000 100 chrVII:771783-772277 1.0000 100 chrI:141619-141917 1.0000 100 chrVIII:147617-148741 1.0000 100 chrV:42125-42656 1.0000 100 chrXII:371156-372900 1.0000 100 chrV:53567-53878 1.0000 100 chrXIII:287532-287709 1.0000 100 chrXIII:320938-321322 1.0000 100 chrXI:558484-559493 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.297 C 0.203 G 0.203 T 0.297 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MIG1/background): A 0.303 C 0.197 G 0.197 T 0.303 ******************************************************************************** ******************************************************************************** MOTIF GCBCHMDMSSGGRRTCGAACCSSGGAYSYY MEME-1 width = 30 sites = 61 llr = 1135 E-value = 2.9e-197 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCBCHMDMSSGGRRTCGAACCSSGGAYSYY MEME-1 Description -------------------------------------------------------------------------------- Simplified A :2123233:21:64:::aa:::1:26:::1 pos.-specific C :54644:554:1:2:8:::a8441115535 probability G 72211242448942::a::::45671132: matrix T 3131223:2:1::2a2::::12:2:23154 bits 2.3 * 2.1 * * 1.9 * * * 1.6 * * **** Relative 1.4 * * ***** Entropy 1.2 ** ******* (26.8 bits) 0.9 * *** ******* * 0.7 * ***** ******* *** ** 0.5 **** ******* *********** **** 0.2 ************* **************** 0.0 ------------------------------ Multilevel GCCCCCGCCCGGAATCGAACCCGGGACCTC consensus T T AATAGG GG GCTATTGCT sequence G T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBCHMDMSSGGRRTCGAACCSSGGAYSYY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXVI:860143-860697 - 49 4.08e-13 AATAAAATCT GCGCAAGCCCGGAATCGAACCGGGGGCCCA ACGATGGCAA chrXV:226450-226866 + 4 4.08e-13 TTT GCGCAAGCCCGGAATCGAACCGGGGGCCCA ACGATGGCAA chrVII:845286-846179 - 7 4.08e-13 AAAAAACATT GCGCAAGCCCGGAATCGAACCGGGGGCCCA ACGATG chrIV:83441-83812 - 12 4.08e-13 AATTAAACTT GCGCAAGCCCGGAATCGAACCGGGGGCCCA ACGATGGCAA chrXVI:572015-572562 - 71 4.08e-13 . GCGCAAGCCCGGAATCGAACCGGGGGCCCA ACGATGGCAA chrXII:448459-448838 + 53 7.40e-12 CAAAAAAGAA GGTCCTACCCGGATTCGAACCGGGGTTGTC CGGATCAAAA chrIV:802570-802992 + 1 7.40e-12 . GGTCCTACCCGGATTCGAACCGGGGTTGTC CGGATCAAAA chrII:197296-197830 - 24 9.90e-12 GCAAAAAAAT GGTCTCTAGCGGGATCGAACCGCTGATCCC CGCGTTATTA chrXIV:602101-602569 - 70 9.90e-12 T GGTCTCTAGCGGGATCGAACCGCTGATCCC CGCGTTATTA chrVII:185507-185889 + 67 9.90e-12 AAAAAAGATA GCCCTGTAGGGGGCTCGAACCCCTAACCTT ATGA chrV:435604-435994 + 4 9.90e-12 AAA GCCCTGTAGGGGGCTCGAACCCCTAACCTT ATGATTAAGA chrV:443067-443374 + 33 9.90e-12 AAAAAAATAT GGTCTCTAGCGGGATCGAACCGCTGATCCC CGCGTTATTA chrXVI:581847-582379 - 41 9.90e-12 AAAAAAGAAA GCCCTGTAGGGGGCTCGAACCCCTAACCTT ATGATTAAGA chrX:414812-414912 - 28 9.90e-12 AAAAATATTA GCCCTGTAGGGGGCTCGAACCCCTAACCTT ATGATTAAGA chrIV:1016964-1017479 + 37 1.52e-11 AAAAAGAAAC TCCGAAGCGGGGAGTCGAACCCCGGTCTCC ACGGTGAGAA chrII:350647-351057 - 66 2.64e-11 AATAA GGTCTTACCCGGATTCGAACCGGGGTTGTC CGGATCAAAA chrX:233730-233830 - 39 3.02e-11 AAGAATATTC TTCCCCGCCAGGACTCGAACCTGGAATCTC CTGGTTCGTA chrV:130818-131382 + 33 5.13e-11 GAAAAAAATA GGTCTTACCCGGATTCGAACCGGGGTTGTT CGGATCAAAA chrIII:82196-82696 + 67 7.53e-11 AAAAAAAAAC TCCGATACGGGGAGTCGAACCCCGGTCTCC ACGG chrV:176888-177491 - 1 7.53e-11 AAAAAAGTAC TCCGATACGGGGAGTCGAACCCCGGTCTCC chrIX:370233-370719 - 32 7.53e-11 ATAAACATAC TCCGATACGGGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrXIII:290508-291141 - 68 7.53e-11 GAC TCCGATACGGGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrVIII:475480-475897 + 69 9.68e-11 ATGTTAAAAT GTTCCAACCGAGGATCGAACTCGGGACCTT TG chrXIII:420313-420869 + 48 3.58e-10 AGATAAAAAT GATTTCGCCCAGGATCGAACTGGGGACGTT CTGCGTGTTA chrV:438493-438998 - 48 3.58e-10 AAAAAAAATT GATTTCGCCCAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXI:307890-308424 + 38 3.58e-10 AAAAAAAATT GATTTCGCCCAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXIII:586374-586894 + 53 3.58e-10 TCAAAAAAAT GATTTCGCCCAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXII:374202-374686 - 3 4.49e-10 CAAAAAAATC TTCCCCGCCAGGACTTGAACCTGGAATCTT CT chrXIV:95994-96516 + 37 4.49e-10 CAAAAAATTT GAGCGGTACGAGAATCGAACCCGTGTCCCC ACCTTGGAAG chrIV:619725-620230 + 43 4.49e-10 ATAAAAAATC TTCCCCGCCAGGACTTGAACCTGGAATCTT CTGGTTCGTA chrXI:490767-491308 - 23 4.49e-10 AAAAAAATTC TTCCCCGCCAGGACTTGAACCTGGAATCTT CTGGTTCGTA chrXIII:320938-321322 + 68 1.32e-09 AATAAAAAAT GGACGAGTCCGGAATCGAACCGGAGACCTC TCC chrXVI:856736-857163 - 45 1.32e-09 AAATTAAAAT GGACGAGTCCGGAATCGAACCGGAGACCTC TCCCATGCTA chrXVI:768929-769469 + 59 1.32e-09 AGTAAAGAAC TCCTCATAGGGGGCTCGAACCCCTGACATT TCGGTATCCT chrVII:774134-774607 - 71 1.32e-09 . GGACGAGTCCGGAATCGAACCGGAGACCTC TCCCATGCTA chrVII:115348-115738 - 60 1.32e-09 AAAAAAGAAC TCCTCATAGGGGGCTCGAACCCCTGACATT TCGGTATCCT chrIX:174466-175720 - 30 3.24e-09 GAAAAAAATT GCTTCCAATCGGATTTGAACCGATGATCTC CACATTACTA chrIV:1095064-1095655 + 62 3.92e-09 AAATAAAAAT GCGAACTCTGTGGATCGAACACAGGACCTC CAGATATCT chrXIII:131621-132087 + 22 5.70e-09 GAAACAAAGC ACTCACGATGGGGGTCGAACCCATAATCTT CTGATTAGAA chrX:374190-374290 + 34 5.70e-09 GAAACAAAGC ACTCACGATGGGGGTCGAACCCATAATCTT CTGATTAGAA chrXIII:747690-748138 + 29 5.70e-09 ACTAAAAAAC ACTCACGATGGGGGTCGAACCCATAATCTT CTGATTAGAA chrXI:513121-513617 + 14 6.85e-09 ATAAAAAATC TCCGCGACGGGGAATTGAACCCCGATCTGG CACGCGACAA chrX:204555-204655 - 24 6.85e-09 AAAAAAAATC TCCGCGACGGGGAATTGAACCCCGATCTGG CACGCGACAA chrXIII:463339-463904 - 24 6.85e-09 TAAAAAAATC TCCGCGACGGGGAATTGAACCCCGATCTGG CACGCGACAA chrII:226989-227332 - 16 1.17e-08 AAAAAATAAC GACAACTGCAGGACTCGAACCTGCGCGGGC AAAGCCCAAA chrXIII:259013-259376 + 15 1.17e-08 AAAAAATAAC GACAACTGCAGGACTCGAACCTGCGCGGGC AAAGCCCAAA chrVII:440466-441037 + 16 1.27e-08 GGCTTATTAT GCGAATTCTGTGGATCGAACACAGGACCTC CAGATAACTT chrXVI:622307-622840 + 18 1.27e-08 AAAAATAAAT GCGAATTCTGTGGATCGAACACAGGACCTC CAGATAACTT chrXIII:379063-379598 + 24 2.91e-08 AAAATAAATT GAAACGGACAGGAATTGAACCTGCAACCCT TCGATTGCAA chrII:9375-9870 + 62 3.69e-08 TGTTGGACGG TTGTCCGCGCGAGTTCGAACCTCGCATCCT TCAGTATTT chrII:347403-347905 + 50 3.69e-08 TGTTGGACGG TTGTCCGCGCGAGTTCGAACCTCGCATCCT TCAGTAATAT chrXIV:632430-632847 - 54 4.65e-08 GAAAAAAAAC GACCCCAGTGAGGGTTGAACTCACGATCTT GCGATTAACA chrVII:730968-731455 - 19 4.65e-08 AGCAAAAAAC GACCCCAGTGAGGGTTGAACTCACGATCTT GCGATTAACA chrXVI:338441-339376 - 31 9.03e-08 TGATTTAGCA GCGCCGTGGCGCAGTGGAAGCGCGCAGGGC TCATAACCCT chrX:517657-517757 - 36 9.03e-08 TAAAAGTTAA GCGCCGTGGCGCAGTGGAAGCGCGCAGGGC TCATAACCCT chrIII:149732-150201 + 5 9.03e-08 TTGA GCGCCGTGGCGCAGTGGAAGCGCGCAGGGC TCATAACCCT chrXI:312832-314027 + 23 1.12e-07 AAAATAAAAT GCCATCTCCTAGAATCGAACCAGGGTTTCA TCGGCCACAA chrXVI:689391-689862 - 40 1.12e-07 AAAATAATAC GACACCAGCAGGATTTGAACCAGCGCGGGC AGAGCCCAAC chrIX:248510-249347 - 23 1.12e-07 AAAAAATAAC GACACCAGCAGGATTTGAACCAGCGCGGGC AGAGCCCAAC chrVI:191210-191847 + 36 1.57e-07 AAAGAAATGC GTCACAGACAGGATTCGAACCTGCGCAGGT AAAACCCAAT chrVII:640809-642225 - 21 5.13e-07 AGTCCTCTAT TCCCAATGTGTCGTTCGAACTCGTGGTGGC GTCGCCTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBCHMDMSSGGRRTCGAACCSSGGAYSYY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:860143-860697 4.1e-13 48_[-1]_22 chrXV:226450-226866 4.1e-13 3_[+1]_67 chrVII:845286-846179 4.1e-13 6_[-1]_64 chrIV:83441-83812 4.1e-13 11_[-1]_59 chrXVI:572015-572562 4.1e-13 70_[-1] chrXII:448459-448838 7.4e-12 52_[+1]_18 chrIV:802570-802992 7.4e-12 [+1]_70 chrII:197296-197830 9.9e-12 23_[-1]_47 chrXIV:602101-602569 9.9e-12 69_[-1]_1 chrVII:185507-185889 9.9e-12 66_[+1]_4 chrV:435604-435994 9.9e-12 3_[+1]_67 chrV:443067-443374 9.9e-12 32_[+1]_38 chrXVI:581847-582379 9.9e-12 40_[-1]_30 chrX:414812-414912 9.9e-12 27_[-1]_43 chrIV:1016964-1017479 1.5e-11 36_[+1]_34 chrII:350647-351057 2.6e-11 65_[-1]_5 chrX:233730-233830 3e-11 38_[-1]_32 chrV:130818-131382 5.1e-11 32_[+1]_38 chrIII:82196-82696 7.5e-11 66_[+1]_4 chrV:176888-177491 7.5e-11 [-1]_70 chrIX:370233-370719 7.5e-11 31_[-1]_39 chrXIII:290508-291141 7.5e-11 67_[-1]_3 chrVIII:475480-475897 9.7e-11 68_[+1]_2 chrXIII:420313-420869 3.6e-10 47_[+1]_23 chrV:438493-438998 3.6e-10 47_[-1]_23 chrXI:307890-308424 3.6e-10 37_[+1]_33 chrXIII:586374-586894 3.6e-10 52_[+1]_18 chrXII:374202-374686 4.5e-10 2_[-1]_68 chrXIV:95994-96516 4.5e-10 36_[+1]_34 chrIV:619725-620230 4.5e-10 42_[+1]_28 chrXI:490767-491308 4.5e-10 22_[-1]_48 chrXIII:320938-321322 1.3e-09 67_[+1]_3 chrXVI:856736-857163 1.3e-09 44_[-1]_26 chrXVI:768929-769469 1.3e-09 58_[+1]_12 chrVII:774134-774607 1.3e-09 70_[-1] chrVII:115348-115738 1.3e-09 59_[-1]_11 chrIX:174466-175720 3.2e-09 29_[-1]_41 chrIV:1095064-1095655 3.9e-09 61_[+1]_9 chrXIII:131621-132087 5.7e-09 21_[+1]_49 chrX:374190-374290 5.7e-09 33_[+1]_37 chrXIII:747690-748138 5.7e-09 28_[+1]_42 chrXI:513121-513617 6.8e-09 13_[+1]_57 chrX:204555-204655 6.8e-09 23_[-1]_47 chrXIII:463339-463904 6.8e-09 23_[-1]_47 chrII:226989-227332 1.2e-08 15_[-1]_55 chrXIII:259013-259376 1.2e-08 14_[+1]_56 chrVII:440466-441037 1.3e-08 15_[+1]_55 chrXVI:622307-622840 1.3e-08 17_[+1]_53 chrXIII:379063-379598 2.9e-08 23_[+1]_47 chrII:9375-9870 3.7e-08 61_[+1]_9 chrII:347403-347905 3.7e-08 49_[+1]_21 chrXIV:632430-632847 4.7e-08 53_[-1]_17 chrVII:730968-731455 4.7e-08 18_[-1]_52 chrXVI:338441-339376 9e-08 30_[-1]_40 chrX:517657-517757 9e-08 35_[-1]_35 chrIII:149732-150201 9e-08 4_[+1]_66 chrXI:312832-314027 1.1e-07 22_[+1]_48 chrXVI:689391-689862 1.1e-07 39_[-1]_31 chrIX:248510-249347 1.1e-07 22_[-1]_48 chrVI:191210-191847 1.6e-07 35_[+1]_35 chrVII:640809-642225 5.1e-07 20_[-1]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBCHMDMSSGGRRTCGAACCSSGGAYSYY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCBCHMDMSSGGRRTCGAACCSSGGAYSYY width=30 seqs=61 chrXVI:860143-860697 ( 49) GCGCAAGCCCGGAATCGAACCGGGGGCCCA 1 chrXV:226450-226866 ( 4) GCGCAAGCCCGGAATCGAACCGGGGGCCCA 1 chrVII:845286-846179 ( 7) GCGCAAGCCCGGAATCGAACCGGGGGCCCA 1 chrIV:83441-83812 ( 12) GCGCAAGCCCGGAATCGAACCGGGGGCCCA 1 chrXVI:572015-572562 ( 71) GCGCAAGCCCGGAATCGAACCGGGGGCCCA 1 chrXII:448459-448838 ( 53) GGTCCTACCCGGATTCGAACCGGGGTTGTC 1 chrIV:802570-802992 ( 1) GGTCCTACCCGGATTCGAACCGGGGTTGTC 1 chrII:197296-197830 ( 24) GGTCTCTAGCGGGATCGAACCGCTGATCCC 1 chrXIV:602101-602569 ( 70) GGTCTCTAGCGGGATCGAACCGCTGATCCC 1 chrVII:185507-185889 ( 67) GCCCTGTAGGGGGCTCGAACCCCTAACCTT 1 chrV:435604-435994 ( 4) GCCCTGTAGGGGGCTCGAACCCCTAACCTT 1 chrV:443067-443374 ( 33) GGTCTCTAGCGGGATCGAACCGCTGATCCC 1 chrXVI:581847-582379 ( 41) GCCCTGTAGGGGGCTCGAACCCCTAACCTT 1 chrX:414812-414912 ( 28) GCCCTGTAGGGGGCTCGAACCCCTAACCTT 1 chrIV:1016964-1017479 ( 37) TCCGAAGCGGGGAGTCGAACCCCGGTCTCC 1 chrII:350647-351057 ( 66) GGTCTTACCCGGATTCGAACCGGGGTTGTC 1 chrX:233730-233830 ( 39) TTCCCCGCCAGGACTCGAACCTGGAATCTC 1 chrV:130818-131382 ( 33) GGTCTTACCCGGATTCGAACCGGGGTTGTT 1 chrIII:82196-82696 ( 67) TCCGATACGGGGAGTCGAACCCCGGTCTCC 1 chrV:176888-177491 ( 1) TCCGATACGGGGAGTCGAACCCCGGTCTCC 1 chrIX:370233-370719 ( 32) TCCGATACGGGGAGTCGAACCCCGGTCTCC 1 chrXIII:290508-291141 ( 68) TCCGATACGGGGAGTCGAACCCCGGTCTCC 1 chrVIII:475480-475897 ( 69) GTTCCAACCGAGGATCGAACTCGGGACCTT 1 chrXIII:420313-420869 ( 48) GATTTCGCCCAGGATCGAACTGGGGACGTT 1 chrV:438493-438998 ( 48) GATTTCGCCCAGGATCGAACTGGGGACGTT 1 chrXI:307890-308424 ( 38) GATTTCGCCCAGGATCGAACTGGGGACGTT 1 chrXIII:586374-586894 ( 53) GATTTCGCCCAGGATCGAACTGGGGACGTT 1 chrXII:374202-374686 ( 3) TTCCCCGCCAGGACTTGAACCTGGAATCTT 1 chrXIV:95994-96516 ( 37) GAGCGGTACGAGAATCGAACCCGTGTCCCC 1 chrIV:619725-620230 ( 43) TTCCCCGCCAGGACTTGAACCTGGAATCTT 1 chrXI:490767-491308 ( 23) TTCCCCGCCAGGACTTGAACCTGGAATCTT 1 chrXIII:320938-321322 ( 68) GGACGAGTCCGGAATCGAACCGGAGACCTC 1 chrXVI:856736-857163 ( 45) GGACGAGTCCGGAATCGAACCGGAGACCTC 1 chrXVI:768929-769469 ( 59) TCCTCATAGGGGGCTCGAACCCCTGACATT 1 chrVII:774134-774607 ( 71) GGACGAGTCCGGAATCGAACCGGAGACCTC 1 chrVII:115348-115738 ( 60) TCCTCATAGGGGGCTCGAACCCCTGACATT 1 chrIX:174466-175720 ( 30) GCTTCCAATCGGATTTGAACCGATGATCTC 1 chrIV:1095064-1095655 ( 62) GCGAACTCTGTGGATCGAACACAGGACCTC 1 chrXIII:131621-132087 ( 22) ACTCACGATGGGGGTCGAACCCATAATCTT 1 chrX:374190-374290 ( 34) ACTCACGATGGGGGTCGAACCCATAATCTT 1 chrXIII:747690-748138 ( 29) ACTCACGATGGGGGTCGAACCCATAATCTT 1 chrXI:513121-513617 ( 14) TCCGCGACGGGGAATTGAACCCCGATCTGG 1 chrX:204555-204655 ( 24) TCCGCGACGGGGAATTGAACCCCGATCTGG 1 chrXIII:463339-463904 ( 24) TCCGCGACGGGGAATTGAACCCCGATCTGG 1 chrII:226989-227332 ( 16) GACAACTGCAGGACTCGAACCTGCGCGGGC 1 chrXIII:259013-259376 ( 15) GACAACTGCAGGACTCGAACCTGCGCGGGC 1 chrVII:440466-441037 ( 16) GCGAATTCTGTGGATCGAACACAGGACCTC 1 chrXVI:622307-622840 ( 18) GCGAATTCTGTGGATCGAACACAGGACCTC 1 chrXIII:379063-379598 ( 24) GAAACGGACAGGAATTGAACCTGCAACCCT 1 chrII:9375-9870 ( 62) TTGTCCGCGCGAGTTCGAACCTCGCATCCT 1 chrII:347403-347905 ( 50) TTGTCCGCGCGAGTTCGAACCTCGCATCCT 1 chrXIV:632430-632847 ( 54) GACCCCAGTGAGGGTTGAACTCACGATCTT 1 chrVII:730968-731455 ( 19) GACCCCAGTGAGGGTTGAACTCACGATCTT 1 chrXVI:338441-339376 ( 31) GCGCCGTGGCGCAGTGGAAGCGCGCAGGGC 1 chrX:517657-517757 ( 36) GCGCCGTGGCGCAGTGGAAGCGCGCAGGGC 1 chrIII:149732-150201 ( 5) GCGCCGTGGCGCAGTGGAAGCGCGCAGGGC 1 chrXI:312832-314027 ( 23) GCCATCTCCTAGAATCGAACCAGGGTTTCA 1 chrXVI:689391-689862 ( 40) GACACCAGCAGGATTTGAACCAGCGCGGGC 1 chrIX:248510-249347 ( 23) GACACCAGCAGGATTTGAACCAGCGCGGGC 1 chrVI:191210-191847 ( 36) GTCACAGACAGGATTCGAACCTGCGCAGGT 1 chrVII:640809-642225 ( 21) TCCCAATGTGTCGTTCGAACTCGTGGTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBCHMDMSSGGRRTCGAACCSSGGAYSYY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.7339 E= 2.9e-197 -262 -1257 177 -12 -62 137 -26 -121 -221 117 22 -21 -89 150 -59 -104 4 100 -159 -40 -40 106 0 -89 -12 -1257 100 11 -21 141 -26 -262 -1257 127 87 -89 -89 106 106 -420 -104 -1257 200 -221 -321 -159 220 -1257 96 -1257 106 -1257 43 0 11 -75 -1257 -1257 -1257 172 -1257 194 -200 -62 -1257 -1257 235 -1257 172 -1257 -1257 -1257 172 -1257 -1257 -1257 -1257 227 -200 -1257 -262 206 -1257 -121 -262 106 94 -89 -104 87 132 -1257 -262 -59 154 -30 -30 -126 177 -1257 96 -126 -100 -40 -420 141 -78 18 -321 146 50 -104 -1257 58 0 75 -162 122 -200 38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBCHMDMSSGGRRTCGAACCSSGGAYSYY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 61 E= 2.9e-197 0.049180 0.000000 0.672131 0.278689 0.196721 0.508197 0.163934 0.131148 0.065574 0.442623 0.229508 0.262295 0.163934 0.557377 0.131148 0.147541 0.311475 0.393443 0.065574 0.229508 0.229508 0.409836 0.196721 0.163934 0.278689 0.000000 0.393443 0.327869 0.262295 0.524590 0.163934 0.049180 0.000000 0.475410 0.360656 0.163934 0.163934 0.409836 0.409836 0.016393 0.147541 0.000000 0.786885 0.065574 0.032787 0.065574 0.901639 0.000000 0.590164 0.000000 0.409836 0.000000 0.409836 0.196721 0.213115 0.180328 0.000000 0.000000 0.000000 1.000000 0.000000 0.754098 0.049180 0.196721 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.950820 0.049180 0.000000 0.049180 0.819672 0.000000 0.131148 0.049180 0.409836 0.377049 0.163934 0.147541 0.360656 0.491803 0.000000 0.049180 0.131148 0.573770 0.245902 0.245902 0.081967 0.672131 0.000000 0.590164 0.081967 0.098361 0.229508 0.016393 0.524590 0.114754 0.344262 0.032787 0.540984 0.278689 0.147541 0.000000 0.295082 0.196721 0.508197 0.098361 0.459016 0.049180 0.393443 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBCHMDMSSGGRRTCGAACCSSGGAYSYY MEME-1 regular expression -------------------------------------------------------------------------------- [GT]C[CTG]C[CAT][CA][GTA][CA][CG][CG]GG[AG][AG]TCGAACC[CG][GC][GT][GA][AT][CT][CG][TC][CT] -------------------------------------------------------------------------------- Time 428.24 secs. ******************************************************************************** ******************************************************************************** MOTIF SSCTYWWMCMACTVRGCYAM MEME-2 width = 20 sites = 44 llr = 675 E-value = 3.4e-080 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCTYWWMCMACTVRGCYAM MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:111454:4a::232::a5 pos.-specific C 55723:16a4:9:32:a6:5 probability G 45:1::2::1:::458:::: matrix T ::16553::::1a1:::4:: bits 2.3 * * 2.1 * * 1.9 * * * 1.6 * *** ** * Relative 1.4 * *** ** * Entropy 1.2 * ** *** **** (22.1 bits) 0.9 *** ** *** **** 0.7 *** ** *** ****** 0.5 ****** ****** ****** 0.2 ******************** 0.0 -------------------- Multilevel CGCTTTACCCACTGGGCCAA consensus GC CATA A CA T C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWWMCMACTVRGCYAM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrIX:183313-183688 + 38 7.96e-11 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCAGGA chrXIV:602101-602569 - 33 7.96e-11 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCATTG chrV:443067-443374 + 80 7.96e-11 TTAGCACGGT GCCTTAACCAACTGGGCCAA G chrXIV:569682-570163 + 43 7.96e-11 TTAGCACGGT GCCTTAACCAACTGGGCCAA GAGACCACTG chrIV:1150722-1151168 + 21 2.00e-10 TAGCAGGCAT CGCCTTAACCACTCGGCCAC TGGGACTGAA chrX:617727-617827 - 58 3.03e-10 TAAATCTGAC GCCTTAAACCACTCGGCCAA ACTCCCATTG chrXIII:259013-259376 + 70 3.68e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCATAC chrXII:167813-168218 + 35 3.68e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAA GTTGCCATAT chrXII:962789-963314 + 29 1.07e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCGTCG chrII:9375-9870 - 17 1.07e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCTCCACGA chrVII:115348-115738 - 1 1.07e-09 AAAAGCCGAA CGCTCTACCAACTGAGCTAA chrII:347403-347905 - 5 1.07e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAA CCCT chrII:36251-36612 - 23 6.95e-09 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCTTAC chrXIV:374668-375103 - 40 6.95e-09 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA GTCCGCTTAT chrVII:440466-441037 + 81 6.95e-09 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA chrVIII:237759-238138 + 16 6.95e-09 TTCAGTCTGG CGCTCTCCCAACTGAGCTAA ATCCGCTTAC chrXVI:856736-857163 - 9 1.44e-08 GCTAAGGGAG CGCGCTACCGACTACGCCAC ACGCCCGA chrVII:774134-774607 - 35 1.44e-08 GCTAAGGGAG CGCGCTACCGACTACGCCAC ACGCCCAATT chrXI:83968-84459 - 51 1.81e-08 TAAGTCTGCC GCATTAGACCACTCGGCCAA CCCTCCATAC chrXII:605150-605609 + 78 2.26e-08 ATAAGCACGA AGCTCTAACCACTGAGCTAC ACG chrXIII:572632-573316 + 6 2.81e-08 ACTGA CGCTCTTCCTACTGAGCTAC TGAAGCTATC chrX:390885-390985 + 2 2.81e-08 A CGCTCTTCCTACTGAGCTAC TGAAGCACTA chrXIV:632430-632847 - 17 3.12e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCAT GGAGTCACTT chrXV:353918-354292 + 33 3.46e-08 ACTAGTGTGG CGCCTTACCAACTTGGCCAT AGAAGCAGTA chrXI:457912-459163 - 76 6.28e-08 CAGGC GCCTTAGACCGCTCGGCCAA ACAACCACTT chrIII:151129-151577 + 28 9.08e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTCTT chrV:435604-435994 + 50 9.08e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAGGCTCTT chrXVI:581847-582379 - 5 9.08e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAA CAAG chrX:233730-233830 - 3 1.08e-07 CGTAGCCAGA CGCCGTGACCATTGGGCCAC GA chrXV:340157-340598 + 19 1.08e-07 CGTAGCCAGA CGCCGTGACCATTGGGCCAC GAGGAACAGA chrV:438493-438998 - 11 1.29e-07 TTAAGCAGAT GCCATAACCGACTAGACCAC GAAACCTAAT chrX:542755-542855 + 61 2.27e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTATT chrX:354022-354122 - 69 2.27e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTGAT chrXVI:860143-860697 - 15 2.27e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTTGT chrXV:226450-226866 + 48 2.27e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTGAA chrVI:167222-167691 - 37 2.27e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTCGT chrXIII:837721-838205 - 21 2.27e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTAC CGAGAGTCAA chrVI:162041-162391 - 68 2.27e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCTTGT chrXVI:572015-572562 - 37 2.27e-07 TGGCAACGTT GGATTTTACCACTAAACCAC TTGCGCGAAG chrIII:316229-316426 - 47 3.81e-07 CCTCCAATTA CCCATATCCAACTCCACTAC CACTTACCCT chrVIII:556582-556766 - 36 3.81e-07 CCTCCAATTA CCCATATCCAACTCCACTAC CATTACCCTG chrVI:101165-101550 - 75 1.46e-06 AAGCGA GAATCATACCACTAGACCAC ACGCCCGAAT chrVII:1004057-1004393 - 47 4.12e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAA GGAGGCAAAC chrVII:661546-661945 - 60 4.12e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAA GGAGGCAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWWMCMACTVRGCYAM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIX:183313-183688 8e-11 37_[+2]_43 chrXIV:602101-602569 8e-11 32_[-2]_48 chrV:443067-443374 8e-11 79_[+2]_1 chrXIV:569682-570163 8e-11 42_[+2]_38 chrIV:1150722-1151168 2e-10 20_[+2]_60 chrX:617727-617827 3e-10 57_[-2]_23 chrXIII:259013-259376 3.7e-10 69_[+2]_11 chrXII:167813-168218 3.7e-10 34_[+2]_46 chrXII:962789-963314 1.1e-09 28_[+2]_52 chrII:9375-9870 1.1e-09 16_[-2]_64 chrVII:115348-115738 1.1e-09 [-2]_80 chrII:347403-347905 1.1e-09 4_[-2]_76 chrII:36251-36612 6.9e-09 22_[-2]_58 chrXIV:374668-375103 6.9e-09 39_[-2]_41 chrVII:440466-441037 6.9e-09 80_[+2] chrVIII:237759-238138 6.9e-09 15_[+2]_65 chrXVI:856736-857163 1.4e-08 8_[-2]_72 chrVII:774134-774607 1.4e-08 34_[-2]_46 chrXI:83968-84459 1.8e-08 50_[-2]_30 chrXII:605150-605609 2.3e-08 77_[+2]_3 chrXIII:572632-573316 2.8e-08 5_[+2]_75 chrX:390885-390985 2.8e-08 1_[+2]_79 chrXIV:632430-632847 3.1e-08 16_[-2]_64 chrXV:353918-354292 3.5e-08 32_[+2]_48 chrXI:457912-459163 6.3e-08 75_[-2]_5 chrIII:151129-151577 9.1e-08 27_[+2]_53 chrV:435604-435994 9.1e-08 49_[+2]_31 chrXVI:581847-582379 9.1e-08 4_[-2]_76 chrX:233730-233830 1.1e-07 2_[-2]_78 chrXV:340157-340598 1.1e-07 18_[+2]_62 chrV:438493-438998 1.3e-07 10_[-2]_70 chrX:542755-542855 2.3e-07 60_[+2]_20 chrX:354022-354122 2.3e-07 68_[-2]_12 chrXVI:860143-860697 2.3e-07 14_[-2]_66 chrXV:226450-226866 2.3e-07 47_[+2]_33 chrVI:167222-167691 2.3e-07 36_[-2]_44 chrXIII:837721-838205 2.3e-07 20_[-2]_60 chrVI:162041-162391 2.3e-07 67_[-2]_13 chrXVI:572015-572562 2.3e-07 36_[-2]_44 chrIII:316229-316426 3.8e-07 46_[-2]_34 chrVIII:556582-556766 3.8e-07 35_[-2]_45 chrVI:101165-101550 1.5e-06 74_[-2]_6 chrVII:1004057-1004393 4.1e-06 46_[-2]_34 chrVII:661546-661945 4.1e-06 59_[-2]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWWMCMACTVRGCYAM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCTYWWMCMACTVRGCYAM width=20 seqs=44 chrIX:183313-183688 ( 38) GCCTTAACCAACTGGGCCAA 1 chrXIV:602101-602569 ( 33) GCCTTAACCAACTGGGCCAA 1 chrV:443067-443374 ( 80) GCCTTAACCAACTGGGCCAA 1 chrXIV:569682-570163 ( 43) GCCTTAACCAACTGGGCCAA 1 chrIV:1150722-1151168 ( 21) CGCCTTAACCACTCGGCCAC 1 chrX:617727-617827 ( 58) GCCTTAAACCACTCGGCCAA 1 chrXIII:259013-259376 ( 70) CGCCTTAACCACTCGGCCAA 1 chrXII:167813-168218 ( 35) CGCCTTAACCACTCGGCCAA 1 chrXII:962789-963314 ( 29) GCCTTAGACCACTCGGCCAA 1 chrII:9375-9870 ( 17) GCCTTAGACCACTCGGCCAA 1 chrVII:115348-115738 ( 1) CGCTCTACCAACTGAGCTAA 1 chrII:347403-347905 ( 5) GCCTTAGACCACTCGGCCAA 1 chrII:36251-36612 ( 23) CGCTCTCCCAACTGAGCTAA 1 chrXIV:374668-375103 ( 40) CGCTCTCCCAACTGAGCTAA 1 chrVII:440466-441037 ( 81) CGCTCTCCCAACTGAGCTAA 1 chrVIII:237759-238138 ( 16) CGCTCTCCCAACTGAGCTAA 1 chrXVI:856736-857163 ( 9) CGCGCTACCGACTACGCCAC 1 chrVII:774134-774607 ( 35) CGCGCTACCGACTACGCCAC 1 chrXI:83968-84459 ( 51) GCATTAGACCACTCGGCCAA 1 chrXII:605150-605609 ( 78) AGCTCTAACCACTGAGCTAC 1 chrXIII:572632-573316 ( 6) CGCTCTTCCTACTGAGCTAC 1 chrX:390885-390985 ( 2) CGCTCTTCCTACTGAGCTAC 1 chrXIV:632430-632847 ( 17) GCCTTAACCAACTTGGCCAT 1 chrXV:353918-354292 ( 33) CGCCTTACCAACTTGGCCAT 1 chrXI:457912-459163 ( 76) GCCTTAGACCGCTCGGCCAA 1 chrIII:151129-151577 ( 28) CGCGCTACCGATTGCGCCAA 1 chrV:435604-435994 ( 50) CGCGCTACCGATTGCGCCAA 1 chrXVI:581847-582379 ( 5) CGCGCTACCGATTGCGCCAA 1 chrX:233730-233830 ( 3) CGCCGTGACCATTGGGCCAC 1 chrXV:340157-340598 ( 19) CGCCGTGACCATTGGGCCAC 1 chrV:438493-438998 ( 11) GCCATAACCGACTAGACCAC 1 chrX:542755-542855 ( 61) CCTTAAACCAACTTGGCTAC 1 chrX:354022-354122 ( 69) CCTTAAACCAACTTGGCTAC 1 chrXVI:860143-860697 ( 15) GGATTTTACCACTAAACCAC 1 chrXV:226450-226866 ( 48) GGATTTTACCACTAAACCAC 1 chrVI:167222-167691 ( 37) CCTTAAACCAACTTGGCTAC 1 chrXIII:837721-838205 ( 21) CCTTAAACCAACTTGGCTAC 1 chrVI:162041-162391 ( 68) GGATTTTACCACTAAACCAC 1 chrXVI:572015-572562 ( 37) GGATTTTACCACTAAACCAC 1 chrIII:316229-316426 ( 47) CCCATATCCAACTCCACTAC 1 chrVIII:556582-556766 ( 36) CCCATATCCAACTCCACTAC 1 chrVI:101165-101550 ( 75) GAATCATACCACTAGACCAC 1 chrVII:1004057-1004393 ( 47) ACGCTCTACCACTAAGCTAA 1 chrVII:661546-661945 ( 60) ACGCTCTACCACTAAGCTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWWMCMACTVRGCYAM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48600 bayes= 9.66 E= 3.4e-080 -215 147 97 -1210 -373 121 141 -1210 -115 189 -211 -174 -215 -11 -79 107 -174 69 -211 85 51 -211 -1210 79 72 -111 -31 -28 51 153 -1210 -1210 -1210 234 -1210 -1210 35 113 -53 -274 169 -1210 -311 -1210 -1210 217 -1210 -142 -1210 -1210 -1210 172 -42 35 97 -115 7 -31 141 -1210 -74 -1210 206 -1210 -1210 234 -1210 -1210 -1210 169 -1210 26 172 -1210 -1210 -1210 72 121 -1210 -274 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWWMCMACTVRGCYAM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 44 E= 3.4e-080 0.068182 0.545455 0.386364 0.000000 0.022727 0.454545 0.522727 0.000000 0.136364 0.727273 0.045455 0.090909 0.068182 0.181818 0.113636 0.636364 0.090909 0.318182 0.045455 0.545455 0.431818 0.045455 0.000000 0.522727 0.500000 0.090909 0.159091 0.250000 0.431818 0.568182 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.386364 0.431818 0.136364 0.045455 0.977273 0.000000 0.022727 0.000000 0.000000 0.886364 0.000000 0.113636 0.000000 0.000000 0.000000 1.000000 0.227273 0.250000 0.386364 0.136364 0.318182 0.159091 0.522727 0.000000 0.181818 0.000000 0.818182 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.636364 0.000000 0.363636 1.000000 0.000000 0.000000 0.000000 0.500000 0.454545 0.000000 0.045455 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWWMCMACTVRGCYAM MEME-2 regular expression -------------------------------------------------------------------------------- [CG][GC]CT[TC][TA][AT][CA]C[CA]ACT[GCA][GA]GC[CT]A[AC] -------------------------------------------------------------------------------- Time 753.79 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTARYGGYTATCACWTCACGYTTTSAYCG MEME-3 width = 30 sites = 11 llr = 321 E-value = 1.3e-038 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTARYGGYTATCACWTCACGYTTTSAYCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:a5:::::a::a:5:16:::::::92:: pos.-specific C :::::5::5:::9:82363725:226:583 probability G :9::5:aa:::1:::::::38::1:41:27 matrix T a:a::5::5a:91:23731::5a78::3:: bits 2.3 ** 2.1 ** 1.9 * ** * 1.6 **** ** ** *** * * * Relative 1.4 **** ** ****** ** * ** ** Entropy 1.2 ***** ** ****** ** * *** ** (42.0 bits) 0.9 *************** ** **** *** ** 0.7 *************** ************** 0.5 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel TGTAGTGGTTATCACATCACGTTTTCACCG consensus AC C TCTCG C G T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTARYGGYTATCACWTCACGYTTTSAYCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrII:644947-645417 + 45 4.68e-18 TCCGATATAG TGTAACGGCTATCACATCACGCTTTCACCG TGGAGACCGG chrIX:370233-370719 + 1 4.68e-18 . TGTAACGGCTATCACATCACGCTTTCACCG TGGAGACCGG chrXIII:290508-291141 + 37 4.68e-18 TCCGATATAG TGTAACGGCTATCACATCACGCTTTCACCG TGGAGACCGG chrIV:1016964-1017479 - 68 1.33e-16 TAG TGTAACGGCTATCACATCACGTTCTCACCG TGGAGACCGG chrIX:197384-197790 + 65 1.33e-16 TCCGATGTAG TGTAACGGCTATCACATCACGTTCTCACCG TGGAGA chrII:350647-351057 + 35 1.09e-13 GGTTTTATAG TGTAGTGGTTATCACTTTCGGTTTTGATCC GGACAACCCC chrV:130818-131382 - 64 1.09e-13 TTTATAG TGTAGTGGTTATCACTTTCGGTTTTGATCC GAACAACCCC chrIV:802570-802992 - 32 1.09e-13 GGTCCTATAG TGTAGTGGTTATCACTTTCGGTTTTGATCC GGACAACCCC chrVII:779368-779898 + 43 7.56e-13 GGGCGGTTAG TGTAGTGGTTATCATCCCACCCTTCCAAGG TGGGGACACG chrXIV:95994-96516 - 68 7.56e-13 TAG TGTAGTGGTTATCATCCCACCCTTCCAAGG TGGGGACACG chrXI:312832-314027 - 54 3.87e-11 GCCATCTTAG TATAGTGGTTAGTACACATCGTTGTGGCCG ATGAAACCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTARYGGYTATCACWTCACGYTTTSAYCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:644947-645417 4.7e-18 44_[+3]_26 chrIX:370233-370719 4.7e-18 [+3]_70 chrXIII:290508-291141 4.7e-18 36_[+3]_34 chrIV:1016964-1017479 1.3e-16 67_[-3]_3 chrIX:197384-197790 1.3e-16 64_[+3]_6 chrII:350647-351057 1.1e-13 34_[+3]_36 chrV:130818-131382 1.1e-13 63_[-3]_7 chrIV:802570-802992 1.1e-13 31_[-3]_39 chrVII:779368-779898 7.6e-13 42_[+3]_28 chrXIV:95994-96516 7.6e-13 67_[-3]_3 chrXI:312832-314027 3.9e-11 53_[-3]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTARYGGYTATCACWTCACGYTTTSAYCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTARYGGYTATCACWTCACGYTTTSAYCG width=30 seqs=11 chrII:644947-645417 ( 45) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrIX:370233-370719 ( 1) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrXIII:290508-291141 ( 37) TGTAACGGCTATCACATCACGCTTTCACCG 1 chrIV:1016964-1017479 ( 68) TGTAACGGCTATCACATCACGTTCTCACCG 1 chrIX:197384-197790 ( 65) TGTAACGGCTATCACATCACGTTCTCACCG 1 chrII:350647-351057 ( 35) TGTAGTGGTTATCACTTTCGGTTTTGATCC 1 chrV:130818-131382 ( 64) TGTAGTGGTTATCACTTTCGGTTTTGATCC 1 chrIV:802570-802992 ( 32) TGTAGTGGTTATCACTTTCGGTTTTGATCC 1 chrVII:779368-779898 ( 43) TGTAGTGGTTATCATCCCACCCTTCCAAGG 1 chrXIV:95994-96516 ( 68) TGTAGTGGTTATCATCCCACCCTTCCAAGG 1 chrXI:312832-314027 ( 54) TATAGTGGTTAGTACACATCGTTGTGGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTARYGGYTATCACWTCACGYTTTSAYCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 12.2739 E= 1.3e-038 -1010 -1010 -1010 172 -173 -1010 221 -1010 -1010 -1010 -1010 172 172 -1010 -1010 -1010 58 -1010 147 -1010 -1010 121 -1010 85 -1010 -1010 234 -1010 -1010 -1010 234 -1010 -1010 121 -1010 85 -1010 -1010 -1010 172 172 -1010 -1010 -1010 -1010 -1010 -111 158 -1010 221 -1010 -173 172 -1010 -1010 -1010 -1010 205 -1010 -74 85 -11 -1010 -15 -1010 47 -1010 126 -173 169 -1010 -15 107 47 -1010 -173 -1010 188 47 -1010 -1010 -11 205 -1010 -1010 121 -1010 85 -1010 -1010 -1010 172 -1010 -11 -111 126 -1010 -11 -1010 143 -1010 169 89 -1010 158 -1010 -111 -1010 -74 147 -1010 -15 -1010 205 -11 -1010 -1010 47 188 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTARYGGYTATCACWTCACGYTTTSAYCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 11 E= 1.3e-038 0.000000 0.000000 0.000000 1.000000 0.090909 0.000000 0.909091 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.454545 0.000000 0.545455 0.000000 0.000000 0.454545 0.000000 0.545455 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.454545 0.000000 0.545455 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.090909 0.909091 0.000000 0.909091 0.000000 0.090909 1.000000 0.000000 0.000000 0.000000 0.000000 0.818182 0.000000 0.181818 0.545455 0.181818 0.000000 0.272727 0.000000 0.272727 0.000000 0.727273 0.090909 0.636364 0.000000 0.272727 0.636364 0.272727 0.000000 0.090909 0.000000 0.727273 0.272727 0.000000 0.000000 0.181818 0.818182 0.000000 0.000000 0.454545 0.000000 0.545455 0.000000 0.000000 0.000000 1.000000 0.000000 0.181818 0.090909 0.727273 0.000000 0.181818 0.000000 0.818182 0.000000 0.636364 0.363636 0.000000 0.909091 0.000000 0.090909 0.000000 0.181818 0.545455 0.000000 0.272727 0.000000 0.818182 0.181818 0.000000 0.000000 0.272727 0.727273 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTARYGGYTATCACWTCACGYTTTSAYCG MEME-3 regular expression -------------------------------------------------------------------------------- TGTA[GA][TC]GG[TC]TATCAC[AT][TC][CT][AC][CG]G[TC]TTT[CG]A[CT]C[GC] -------------------------------------------------------------------------------- Time 1073.82 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:347403-347905 2.66e-10 4_[-2(1.07e-09)]_25_[+1(3.69e-08)]_\ 21 chrVIII:134097-134839 9.92e-01 100 chrXIV:771815-772453 2.03e-01 100 chrVII:167923-169285 5.54e-01 100 chrXI:126198-127595 3.46e-01 100 chrI:151345-151837 4.70e-01 100 chrIV:1278614-1279074 3.45e-01 100 chrXVI:821639-822318 9.82e-01 100 chrXIII:511177-512331 7.24e-01 100 chrVII:519388-521040 7.50e-02 100 chrVII:383996-384989 3.41e-01 100 chrXI:261100-262038 8.28e-02 1_[+2(9.05e-05)]_79 chrIV:599791-600206 9.78e-02 100 chrIII:114358-114724 7.35e-01 100 chrXVI:404484-406052 5.91e-01 100 chrIV:927518-929070 4.66e-01 100 chrXI:382222-382410 1.04e-01 100 chrIX:248510-249347 5.39e-04 22_[-1(1.12e-07)]_48 chrXIV:501292-502764 2.21e-01 100 chrIV:808440-810360 4.57e-01 100 chrXII:282810-284020 2.05e-01 100 chrIX:231292-232264 4.46e-01 100 chrII:233903-235980 7.58e-01 100 chrXI:322431-322970 8.17e-01 100 chrXVI:170920-171558 9.87e-01 100 chrI:182189-183147 8.87e-01 100 chrXV:722905-725751 5.02e-01 100 chrXI:617653-619355 4.70e-01 100 chrVII:806063-807785 2.62e-01 100 chrXV:842378-842973 3.87e-02 57_[-2(7.95e-05)]_23 chrXIII:23999-25919 5.48e-01 100 chrV:66423-69366 8.63e-01 100 chrXVI:572015-572562 1.37e-13 36_[-2(2.27e-07)]_14_[-1(4.08e-13)] chrII:444507-445033 5.58e-01 100 chrIV:600677-602349 4.79e-02 100 chrXV:619255-624589 1.26e-01 100 chrIV:758769-759649 9.08e-01 100 chrXIII:671275-674776 8.29e-02 61_[-3(8.41e-05)]_9 chrVI:226411-227301 8.40e-01 100 chrXII:673486-674593 8.35e-02 100 chrVIII:126485-127533 7.26e-01 100 chrX:414812-414912 2.30e-09 27_[-1(9.90e-12)]_43 chrVII:287107-287704 2.45e-02 74_[+2(1.46e-05)]_6 chrVIII:281636-283040 7.05e-01 100 chrXII:793683-797633 2.89e-01 100 chrXIII:162957-164363 9.18e-01 100 chrXIV:87506-89874 8.14e-02 100 chrXIV:619751-620018 8.85e-01 100 chrVII:364878-366720 9.94e-01 100 chrXVI:745320-746810 4.37e-01 100 chrXII:1017650-1019455 6.22e-01 100 chrIV:1352255-1353351 3.38e-01 100 chrXV:515467-516197 4.85e-01 100 chrXIII:159254-160176 4.18e-01 100 chrVII:828412-828959 9.56e-01 100 chrII:45571-46849 9.39e-01 100 chrX:212428-212528 2.23e-01 100 chrVI:183289-183780 3.55e-01 100 chrXVI:282093-283224 6.73e-01 100 chrVI:75130-76936 9.68e-01 100 chrXI:163262-164504 1.62e-01 100 chrXII:737769-738460 8.63e-01 100 chrXI:518832-521629 1.43e-01 100 chrX:647387-647487 6.28e-01 100 chrV:121754-122984 7.28e-01 100 chrIV:802570-802992 5.16e-20 [+1(7.40e-12)]_1_[-3(1.09e-13)]_39 chrVII:115348-115738 4.54e-12 [-2(1.07e-09)]_39_[-1(1.32e-09)]_11 chrXIII:253332-253621 9.41e-01 100 chrXIII:873418-874185 5.36e-01 100 chrXII:1012135-1013724 5.04e-02 100 chrXII:400819-404037 8.69e-01 100 chrVII:920566-921986 7.39e-02 47_[+1(8.37e-05)]_23 chrX:745040-745140 3.05e-01 100 chrXI:364516-365296 3.13e-01 100 chrXII:919252-924152 3.26e-01 100 chrIII:14943-16858 2.96e-01 100 chrV:175386-175626 3.14e-01 100 chrXII:281902-282359 1.22e-01 100 chrIV:893573-894461 2.05e-01 100 chrXII:48770-49208 9.25e-01 100 chrIII:107151-107837 6.04e-01 100 chrXVI:453971-454942 3.34e-01 100 chrV:491069-491962 6.89e-01 100 chrXIV:576669-577579 2.91e-01 100 chrVII:736203-737190 5.35e-01 100 chrXII:253014-255274 1.38e-01 100 chrII:37121-38428 8.28e-01 100 chrXII:809733-815747 4.88e-01 100 chrXV:925144-925419 4.24e-01 100 chrVII:970354-970591 4.30e-01 100 chrIII:833-1014 5.52e-01 100 chrX:608431-608531 8.52e-01 100 chrXV:1003908-1005000 6.45e-01 100 chrVII:730968-731455 1.33e-04 18_[-1(4.65e-08)]_52 chrXV:92736-94731 1.74e-01 100 chrVII:624828-625834 1.04e-02 12_[-2(7.95e-05)]_68 chrXVI:214887-215127 8.25e-01 100 chrIII:137658-139426 2.78e-01 100 chrXVI:810591-811225 1.00e+00 100 chrVIII:149013-149198 3.62e-01 100 chrV:423096-425525 9.95e-01 100 chrXI:490767-491308 5.21e-06 22_[-1(4.49e-10)]_48 chrXVI:581847-582379 4.09e-12 4_[-2(9.08e-08)]_16_[-1(9.90e-12)]_\ 30 chrXII:951039-953897 3.85e-01 100 chrXII:198345-199999 3.81e-01 100 chrII:592254-593302 1.20e-02 47_[-2(5.10e-05)]_33 chrVII:959860-961683 2.94e-01 100 chrXVI:900806-902229 6.60e-01 100 chrXII:975751-976169 9.32e-01 100 chrXV:28398-30839 9.05e-03 100 chrXII:1029114-1030332 4.49e-01 100 chrIV:1305355-1305829 9.93e-01 100 chrV:396175-396543 8.28e-01 100 chrVI:95415-95934 7.20e-02 100 chrIX:210527-211414 2.77e-02 4_[+3(3.83e-05)]_66 chrXVI:927838-928119 9.37e-01 100 chrXV:487455-487750 9.49e-01 100 chrIV:83441-83812 1.27e-08 11_[-1(4.08e-13)]_59 chrIV:1269884-1271111 4.39e-02 7_[-2(8.48e-05)]_73 chrXV:384629-385025 2.45e-01 100 chrVII:611844-615834 3.47e-01 100 chrXIII:463339-463904 4.20e-05 23_[-1(6.85e-09)]_47 chrVII:1048828-1050081 1.55e-01 100 chrIV:392513-393653 1.67e-01 100 chrV:135120-136043 8.42e-01 100 chrVII:398495-400958 6.88e-01 100 chrXV:979524-981094 9.50e-02 100 chrXIII:586374-586894 3.39e-06 52_[+1(3.58e-10)]_18 chrXV:853987-854838 3.97e-01 100 chrX:355190-355290 4.76e-03 44_[-2(2.04e-05)]_36 chrVII:531399-532421 1.73e-02 100 chrX:157476-157576 1.00e-01 100 chrXII:440457-441698 2.82e-01 100 chrXII:64883-66053 4.20e-01 100 chrIV:385114-385792 1.05e-01 69_[+3(7.83e-05)]_1 chrXIII:480399-480801 4.48e-01 100 chrXIV:331442-332508 3.25e-02 100 chrIV:836578-838007 1.24e-01 100 chrII:9375-9870 2.66e-10 16_[-2(1.07e-09)]_25_[+1(3.69e-08)]_\ 9 chrXI:231068-231619 8.23e-02 100 chrXI:99734-99987 4.54e-01 100 chrIX:386646-386920 2.73e-01 100 chrXI:307890-308424 1.19e-06 37_[+1(3.58e-10)]_33 chrXV:605152-606043 4.97e-01 100 chrX:140610-140710 8.13e-01 100 chrXIII:431829-432337 9.18e-01 100 chrVII:323604-324113 8.79e-01 100 chrIV:667648-668204 9.18e-01 100 chrX:540697-540797 3.60e-01 100 chrVII:846917-848388 9.99e-01 100 chrXIII:754474-755554 8.30e-01 100 chrVII:794089-794513 9.99e-01 100 chrXIII:290508-291141 5.34e-21 36_[+3(4.68e-18)]_1_[-1(7.53e-11)]_\ 3 chrIII:162121-164285 5.72e-01 100 chrVII:989901-990361 7.56e-01 100 chrIX:370233-370719 3.84e-21 [+3(4.68e-18)]_1_[-1(7.53e-11)]_39 chrVII:411775-412568 2.44e-01 100 chrVIII:375221-376176 1.86e-01 100 chrXVI:378695-378967 2.54e-01 100 chrXII:242199-243536 1.67e-01 100 chrVII:856673-856926 4.54e-01 100 chrXIII:145992-146247 7.08e-01 100 chrV:322104-323960 7.26e-01 100 chrVI:222804-223789 2.35e-01 100 chrIV:1075123-1075723 3.98e-01 100 chrXII:167813-168218 3.61e-06 34_[+2(3.68e-10)]_46 chrXII:837602-839392 9.63e-02 100 chrVII:914847-916656 5.71e-01 100 chrX:204555-204655 1.23e-05 23_[-1(6.85e-09)]_47 chrXIV:776628-777219 6.21e-01 100 chrVIII:475480-475897 1.86e-06 68_[+1(9.68e-11)]_2 chrXV:79824-80091 8.69e-02 100 chrIV:805674-806552 5.26e-01 100 chrXIII:861168-861401 2.11e-01 100 chrVII:878550-879330 9.45e-01 100 chrXIV:493528-495044 7.16e-01 100 chrX:90845-90945 6.33e-01 100 chrXIV:302615-303893 5.57e-01 100 chrX:56048-56148 9.93e-01 100 chrV:288109-288718 6.35e-01 100 chrXII:731133-732388 9.84e-01 100 chrXVI:828910-829382 2.70e-01 100 chrV:99871-100351 7.53e-02 77_[-2(3.98e-05)]_3 chrVII:902538-903124 9.24e-01 100 chrXVI:819113-820261 9.38e-01 100 chrXV:571736-572139 3.35e-02 76_[-2(2.04e-05)]_4 chrX:466587-466687 8.84e-01 100 chrI:81934-82396 5.48e-01 100 chrVIII:556582-556766 9.40e-04 35_[-2(3.81e-07)]_45 chrXII:368679-370310 3.80e-02 100 chrXII:241649-241973 5.37e-01 100 chrVII:676934-677527 1.47e-01 100 chrXII:628163-628917 4.63e-01 100 chrXI:302714-303215 2.45e-02 9_[-2(1.46e-05)]_71 chrXV:1053981-1054486 9.69e-01 100 chrII:236512-237340 9.04e-01 100 chrXIV:632430-632847 6.02e-09 16_[-2(3.12e-08)]_17_[-1(4.65e-08)]_\ 17 chrIV:721800-722082 5.97e-02 100 chrIV:1490616-1490778 9.28e-01 100 chrVIII:554114-554739 5.66e-02 1_[-3(8.41e-05)]_69 chrXIV:715783-716646 9.89e-01 100 chrIV:619725-620230 5.09e-06 42_[+1(4.49e-10)]_28 chrXII:962789-963314 1.06e-05 28_[+2(1.07e-09)]_52 chrXIV:359598-361044 3.83e-01 100 chrVII:255174-255862 8.45e-01 100 chrXI:258474-259981 7.01e-01 100 chrV:130818-131382 3.32e-19 32_[+1(5.13e-11)]_1_[-3(1.09e-13)]_\ 7 chrVIII:462583-463695 2.83e-01 100 chrVII:110317-110782 6.01e-01 100 chrXIV:442769-444205 3.15e-01 100 chrXVI:453516-453752 1.87e-01 100 chrXII:710633-712920 8.95e-01 100 chrIV:1161488-1164763 9.18e-02 100 chrXII:47462-48541 3.19e-03 28_[+2(3.57e-05)]_52 chrXV:159145-160737 5.01e-01 100 chrXII:720604-721424 4.92e-01 100 chrIV:1095064-1095655 8.80e-06 61_[+1(3.92e-09)]_9 chrXVI:303130-304353 8.76e-01 100 chrXI:202200-203303 4.78e-01 100 chrXV:113500-113878 9.76e-01 100 chrXIII:352075-353242 6.48e-02 100 chrX:390885-390985 3.97e-05 1_[+2(2.81e-08)]_79 chrXVI:576968-578396 6.36e-01 100 chrII:332383-333005 5.18e-01 100 chrVIII:388635-388994 3.27e-01 100 chrXIII:540188-540824 1.05e-01 100 chrV:264476-265602 1.52e-01 100 chrIV:722327-722824 7.74e-01 100 chrV:469957-470473 8.29e-01 100 chrXII:764396-764600 3.02e-01 100 chrII:372103-375771 9.42e-01 100 chrXV:866599-868196 8.84e-01 100 chrVII:122117-123273 6.58e-01 100 chrXV:710135-710554 9.88e-01 100 chrXI:379699-380761 3.74e-01 100 chrV:225509-225709 1.76e-01 100 chrXII:1028210-1028581 7.37e-01 100 chrVI:162041-162391 1.56e-04 67_[-2(2.27e-07)]_13 chrXIII:220032-221001 6.85e-01 100 chrXIII:747690-748138 1.79e-06 28_[+1(5.70e-09)]_42 chrIII:149732-150201 7.06e-06 4_[+1(9.03e-08)]_10_[-1(6.51e-05)]_\ 26 chrXI:100306-106858 7.88e-01 100 chrVIII:495583-496489 7.82e-01 100 chrIV:437555-439232 9.56e-01 100 chrXV:281983-282976 5.91e-03 37_[+1(1.26e-05)]_33 chrV:438493-438998 9.62e-11 10_[-2(1.29e-07)]_17_[-1(3.58e-10)]_\ 23 chrXVI:718327-719536 6.74e-01 100 chrVII:774134-774607 2.88e-12 34_[-2(1.44e-08)]_16_[-1(1.32e-09)] chrXV:407541-408287 8.72e-01 100 chrX:90068-90168 4.84e-01 100 chrX:517657-517757 7.06e-06 35_[-1(9.03e-08)]_35 chrXI:74404-75055 7.24e-01 100 chrI:65816-67855 3.94e-02 100 chrXII:734542-734987 9.03e-01 100 chrXII:611452-612046 6.69e-01 100 chrIV:488031-488235 7.66e-01 100 chrXVI:692623-695021 7.45e-02 100 chrXVI:280499-281774 6.20e-01 100 chrX:606071-606171 5.31e-01 100 chrII:477047-477767 4.88e-01 100 chrXV:340157-340598 2.28e-04 18_[+2(1.08e-07)]_62 chrIV:1491549-1492953 9.57e-01 100 chrXV:978610-979337 2.93e-01 100 chrXV:988350-989510 1.00e+00 100 chrXII:805831-807126 4.63e-01 100 chrVII:254154-254728 9.86e-01 100 chrII:301087-301747 8.16e-01 100 chrXIII:288099-289978 4.59e-01 100 chrXIV:241460-241887 7.16e-01 100 chrXVI:622307-622840 1.87e-05 17_[+1(1.27e-08)]_53 chrXI:38684-39880 2.77e-01 100 chrIII:90880-91103 3.33e-01 100 chrXIII:19043-20594 4.83e-01 100 chrIV:975881-976714 9.72e-01 100 chrXV:1013864-1016000 8.39e-01 100 chrVI:191210-191847 5.83e-04 35_[+1(1.57e-07)]_35 chrVII:56368-58914 6.76e-03 39_[+2(5.56e-06)]_41 chrXIII:572632-573316 9.41e-05 5_[+2(2.81e-08)]_75 chrXIII:67573-68064 1.65e-01 100 chrX:662921-663021 2.72e-01 100 chrXIII:837721-838205 2.59e-04 20_[-2(2.27e-07)]_60 chrXIV:569682-570163 2.68e-07 42_[+2(7.96e-11)]_38 chrXII:86938-88416 4.58e-01 100 chrVII:640809-642225 7.19e-04 20_[-1(5.13e-07)]_50 chrIV:381686-384844 3.47e-02 18_[-2(3.33e-05)]_62 chrVI:220039-221520 1.08e-02 100 chrVII:976926-977707 9.97e-01 100 chrX:374190-374290 1.79e-06 33_[+1(5.70e-09)]_37 chrVI:167222-167691 8.62e-04 36_[-2(2.27e-07)]_44 chrXI:457912-459163 6.51e-04 75_[-2(6.28e-08)]_5 chrIV:1239370-1240324 7.56e-01 100 chrVI:63974-65360 6.94e-01 100 chrX:138967-139067 2.26e-01 100 chrV:443067-443374 1.29e-14 32_[+1(9.90e-12)]_17_[+2(7.96e-11)]_\ 1 chrVII:483350-483686 3.50e-02 15_[-1(1.67e-05)]_55 chrXII:605150-605609 3.19e-05 77_[+2(2.26e-08)]_3 chrXII:261402-264317 9.88e-01 100 chrIV:491469-492806 9.84e-01 100 chrXV:300892-301632 8.08e-01 100 chrII:544562-544819 9.89e-01 100 chrXV:961049-967429 9.76e-01 100 chrX:381299-381399 6.23e-01 100 chrIX:427326-427792 1.54e-01 100 chrVII:968861-969111 6.65e-01 100 chrVI:224318-225870 4.43e-02 100 chrIX:197384-197790 9.97e-13 64_[+3(1.33e-16)]_6 chrV:235235-237166 1.70e-01 100 chrX:59022-59122 5.72e-01 100 chrXIII:115541-117259 7.12e-01 100 chrV:85117-86962 3.78e-01 100 chrXII:932111-932438 9.94e-01 100 chrII:87876-88619 2.96e-01 100 chrIX:174466-175720 4.32e-05 29_[-1(3.24e-09)]_41 chrIV:1268568-1269483 5.57e-01 100 chrXIV:301270-302328 9.53e-01 100 chrXIII:407834-408862 1.60e-01 100 chrX:617727-617827 7.08e-06 57_[-2(3.03e-10)]_23 chrVIII:451202-453153 1.85e-01 100 chrX:519403-519503 1.51e-01 100 chrXIII:859376-860855 2.88e-01 100 chrXII:855706-857579 6.81e-01 100 chrXI:339707-340409 5.50e-01 100 chrXI:7834-8165 1.29e-01 100 chrXIII:498962-500781 6.80e-01 100 chrXVI:172952-174139 9.80e-01 100 chrVII:845286-846179 7.68e-09 6_[-1(4.08e-13)]_64 chrX:227690-227790 7.14e-01 100 chrXV:877198-878042 2.65e-01 100 chrXIV:725714-726328 9.18e-01 100 chrXIV:95994-96516 3.55e-15 36_[+1(4.49e-10)]_1_[-3(7.56e-13)]_\ 3 chrIV:1354303-1355558 1.54e-01 100 chrXIII:729393-731071 7.47e-01 100 chrX:538023-538123 9.83e-02 100 chrIV:322222-323599 4.66e-01 100 chrXV:353918-354292 1.79e-04 32_[+2(3.46e-08)]_48 chrVIII:296850-297224 7.74e-01 100 chrXIII:259013-259376 3.25e-11 14_[+1(1.17e-08)]_25_[+2(3.68e-10)]_\ 11 chrXV:758909-759585 2.75e-01 100 chrXI:164950-165476 4.01e-01 100 chrVII:371232-371499 2.06e-02 62_[+1(1.30e-05)]_8 chrIV:1233684-1234626 9.87e-01 100 chrV:435604-435994 4.09e-12 3_[+1(9.90e-12)]_16_[+2(9.08e-08)]_\ 31 chrXIII:225397-225693 8.04e-01 100 chrII:591579-591797 4.90e-01 100 chrIII:151129-151577 3.96e-04 27_[+2(9.08e-08)]_53 chrXV:168016-168481 7.19e-01 100 chrXVI:640585-641581 2.94e-01 100 chrVIII:423042-423919 6.69e-01 100 chrIX:322655-324351 4.91e-01 100 chrIV:1345311-1346266 5.87e-01 100 chrII:226989-227332 4.34e-05 15_[-1(1.17e-08)]_55 chrIX:177570-178224 6.19e-01 100 chrXI:333815-335016 8.31e-01 100 chrVII:766085-766745 4.14e-01 100 chrXV:444612-446314 3.18e-01 100 chrXII:506171-507557 2.15e-01 100 chrXV:87392-89360 4.61e-01 100 chrVIII:410988-411752 5.91e-01 100 chrV:441811-442688 2.87e-01 100 chrXIV:631674-632144 1.19e-02 32_[+2(4.92e-05)]_48 chrIII:216710-217669 2.61e-01 100 chrV:192241-192642 2.76e-01 100 chrIV:411040-411649 6.07e-01 100 chrIV:1236376-1238557 6.28e-01 100 chrVII:702933-703241 9.90e-01 100 chrVII:661546-661945 1.22e-02 59_[-2(4.12e-06)]_21 chrXVI:794602-796177 8.07e-01 100 chrXV:1048720-1049857 6.77e-01 100 chrXIV:351985-352962 3.93e-01 100 chrXV:977086-978360 4.63e-02 100 chrXV:226450-226866 1.37e-13 3_[+1(4.08e-13)]_14_[+2(2.27e-07)]_\ 33 chrIX:315549-318250 8.36e-01 100 chrVIII:487429-488017 6.55e-01 100 chrVIII:237759-238138 1.76e-05 15_[+2(6.95e-09)]_65 chrXII:498514-499857 6.69e-01 100 chrVII:555168-557555 6.95e-01 100 chrX:73353-73453 9.47e-02 100 chrXIV:505190-507118 5.15e-01 100 chrIV:118424-118908 6.69e-01 100 chrX:391792-391892 1.74e-01 100 chrXII:524049-524411 3.65e-01 100 chrX:196732-196832 6.12e-01 100 chrXIV:413541-417291 8.82e-01 100 chrV:298872-302098 3.22e-02 100 chrII:254861-255801 7.04e-02 100 chrIII:58982-60687 7.88e-01 100 chrXV:909253-911622 2.30e-01 100 chrIV:835778-836236 4.25e-01 100 chrXII:448459-448838 6.56e-08 52_[+1(7.40e-12)]_18 chrII:393018-398236 1.90e-02 100 chrX:464474-464574 3.84e-01 100 chrVII:440466-441037 6.34e-10 15_[+1(1.27e-08)]_35_[+2(6.95e-09)] chrIV:1449777-1451115 9.80e-01 100 chrXVI:731585-733316 7.86e-03 100 chrX:453288-453388 7.42e-01 100 chrIII:57373-58759 1.31e-01 100 chrV:354698-355398 4.10e-01 100 chrXIV:253205-254232 1.11e-01 100 chrVIII:62555-62900 2.90e-01 100 chrVII:185507-185889 4.03e-09 66_[+1(9.90e-12)]_4 chrVII:516249-519010 3.64e-01 100 chrXVI:481435-481847 6.86e-01 100 chrIV:538837-539321 5.75e-01 100 chrV:51804-53182 9.70e-01 100 chrXIII:420313-420869 2.83e-06 47_[+1(3.58e-10)]_23 chrVII:970754-974023 7.73e-01 100 chrVII:277098-278741 3.33e-01 100 chrXII:257637-259479 7.15e-01 100 chrXIII:914889-915380 6.31e-01 100 chrIV:305355-307792 8.87e-01 100 chrIV:1301565-1302596 4.86e-01 100 chrVII:544418-544886 5.58e-03 20_[+2(2.04e-05)]_60 chrXI:107117-109045 4.04e-01 100 chrX:75868-75968 3.52e-03 29_[-3(1.52e-06)]_41 chrII:716728-717959 4.74e-01 100 chrXIII:302737-303212 1.37e-01 100 chrV:460497-462152 3.95e-01 100 chrXIII:731989-733356 6.84e-01 100 chrX:663454-663554 6.81e-01 100 chrXIII:651536-653373 8.49e-01 100 chrVII:779368-779898 1.80e-11 42_[+3(7.56e-13)]_28 chrXVI:768929-769469 2.27e-05 58_[+1(1.32e-09)]_12 chrXII:783623-784734 8.89e-01 100 chrXIV:568057-568919 8.48e-01 100 chrXVI:689391-689862 3.60e-04 39_[-1(1.12e-07)]_31 chrXIII:123018-124221 2.77e-01 100 chrVII:533374-535160 6.63e-01 100 chrVI:101165-101550 8.59e-03 74_[-2(1.46e-06)]_6 chrXI:67815-69393 1.14e-02 20_[-3(4.27e-05)]_50 chrIV:386440-387117 7.54e-01 100 chrVIII:119575-121702 9.00e-01 100 chrXIII:161890-162705 1.13e-01 100 chrIV:207208-210611 2.38e-01 100 chrXVI:55835-56404 1.71e-01 100 chrII:478932-479529 3.72e-01 100 chrXI:525417-526459 1.94e-01 100 chrVII:824176-827239 6.32e-01 100 chrXIII:372179-372654 6.15e-01 100 chrXII:374202-374686 6.04e-06 2_[-1(4.49e-10)]_68 chrXVI:856736-857163 2.88e-12 8_[-2(1.44e-08)]_16_[-1(1.32e-09)]_\ 26 chrVII:345849-346704 6.71e-01 100 chrXV:31040-31916 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chrII:350647-351057 1.75e-19 34_[+3(1.09e-13)]_1_[-1(2.64e-11)]_\ 5 chrXVI:108644-114837 1.03e-01 100 chrII:163076-163920 1.45e-02 38_[+3(9.73e-05)]_32 chrXII:95516-95892 3.10e-01 100 chrV:242000-242515 2.28e-01 100 chrXV:671016-672056 1.07e-01 100 chrIX:99681-100003 8.32e-01 100 chrIV:1078965-1080144 1.51e-03 29_[+1(5.54e-05)]_41 chrI:71772-73720 6.21e-01 100 chrIX:83316-84868 1.45e-01 100 chrIV:1156302-1156750 8.45e-01 100 chrIV:355072-357009 4.04e-01 100 chrXIV:602101-602569 1.29e-14 32_[-2(7.96e-11)]_17_[-1(9.90e-12)]_\ 1 chrIV:427274-428726 9.67e-01 100 chrVII:278920-280357 3.73e-01 100 chrIV:43984-44557 8.20e-02 100 chrVII:876177-878345 3.35e-01 100 chrXIII:549792-553239 7.32e-01 100 chrVII:591252-591625 8.43e-01 100 chrVII:545088-546027 4.97e-01 100 chrXVI:371196-373342 4.86e-01 100 chrXV:92048-92438 4.99e-01 100 chrIII:78364-78873 8.03e-02 100 chrXII:897783-899854 9.46e-01 100 chrV:23510-23860 4.60e-01 100 chrXV:896590-898234 6.84e-01 100 chrXIV:654735-661720 5.31e-01 100 chrVII:316782-317440 9.90e-01 100 chrII:135977-136318 1.54e-01 100 chrX:569644-569744 1.83e-01 100 chrXVI:338441-339376 7.06e-06 30_[-1(9.03e-08)]_40 chrXVI:502793-503279 3.69e-01 100 chrXVI:406233-407796 8.83e-01 100 chrIV:410161-410811 2.19e-01 100 chrIV:1300286-1301291 9.51e-01 100 chrX:354022-354122 2.41e-04 68_[-2(2.27e-07)]_12 chrXIII:504928-505261 3.88e-02 100 chrVII:23917-26314 1.75e-01 100 chrXII:818514-819072 8.22e-01 100 chrXV:907943-909073 4.58e-01 100 chrVII:738902-739619 5.52e-01 100 chrIII:316229-316426 5.36e-04 46_[-2(3.81e-07)]_34 chrVII:1004057-1004393 1.13e-02 46_[-2(4.12e-06)]_34 chrXIII:306170-307229 5.02e-01 100 chrVII:328408-329029 7.14e-01 100 chrV:77520-79934 2.04e-02 42_[-2(5.66e-05)]_38 chrXIII:768193-768425 1.00e+00 100 chrXV:1027725-1029466 4.54e-01 100 chrXII:903863-904860 9.21e-02 100 chrXV:795823-799068 9.91e-01 100 chrXV:832211-832841 4.30e-01 100 chrX:26180-26280 3.52e-01 100 chrXVI:699658-700672 5.26e-01 100 chrIX:96819-97730 9.44e-01 100 chrIII:82196-82696 2.85e-07 66_[+1(7.53e-11)]_4 chrXIV:61547-62981 8.71e-01 100 chrVII:437181-438426 8.79e-01 100 chrXI:551878-552828 9.75e-01 100 chrXI:109210-110640 1.87e-01 100 chrXV:594313-594649 7.16e-01 100 chrIV:915090-916343 5.36e-01 100 chrXIV:102592-103681 7.09e-01 100 chrVII:541726-542157 1.07e-01 100 chrVII:205338-206185 3.12e-01 100 chrXII:366052-366583 6.93e-01 100 chrXIII:131621-132087 1.79e-06 21_[+1(5.70e-09)]_49 chrXIII:753000-754221 3.74e-01 100 chrX:542755-542855 1.70e-04 60_[+2(2.27e-07)]_20 chrXI:83968-84459 1.78e-04 50_[-2(1.81e-08)]_30 chrVII:610509-611577 2.94e-01 100 chrVII:1057169-1058628 2.71e-02 59_[+3(9.38e-05)]_11 chrIV:884278-884579 6.32e-01 100 chrXIII:878555-880207 8.33e-01 100 chrIV:1328757-1330961 8.66e-01 100 chrIII:177058-178785 9.16e-01 100 chrVII:479134-482976 2.78e-01 100 chrX:651923-652023 4.96e-01 100 chrIV:644891-645372 5.84e-01 100 chrIX:325758-326237 1.45e-01 100 chrXIV:560264-560815 9.89e-01 100 chrXV:968077-968656 2.10e-01 100 chrII:644947-645417 2.90e-14 44_[+3(4.68e-18)]_26 chrIV:1150722-1151168 1.69e-07 20_[+2(2.00e-10)]_60 chrVII:987376-987659 5.11e-02 100 chrXI:162127-162732 9.27e-01 100 chrII:680252-682250 1.78e-02 100 chrII:333307-334133 1.01e-01 100 chrXVI:451663-453197 9.38e-01 100 chrXV:841504-842171 9.46e-01 100 chrVIII:125961-126270 8.56e-01 100 chrII:256152-257742 1.63e-01 100 chrXVI:879950-880570 6.41e-01 100 chrXI:513121-513617 3.06e-08 13_[+1(6.85e-09)]_15_[+2(2.04e-05)]_\ 22 chrVII:798570-800144 7.29e-01 100 chrXVI:642038-643608 2.04e-01 100 chrVII:1050256-1050637 7.58e-01 100 chrXII:515297-517029 1.70e-01 100 chrXIV:374668-375103 5.59e-05 39_[-2(6.95e-09)]_41 chrIV:308574-310188 4.89e-01 100 chrX:360132-360232 4.24e-02 100 chrXIII:362948-363376 9.25e-01 100 chrIX:183313-183688 2.02e-06 37_[+2(7.96e-11)]_43 chrVIII:555087-555445 3.76e-01 100 chrXV:778189-779459 1.87e-01 100 chrXIII:892859-894946 6.96e-01 100 chrIV:1461375-1461830 8.05e-01 100 chrIV:720595-721623 6.97e-02 100 chrXII:231946-234258 2.90e-01 100 chrXIII:379063-379598 2.94e-05 23_[+1(2.91e-08)]_47 chrVIII:190687-192601 2.31e-01 100 chrX:233730-233830 8.56e-12 2_[-2(1.08e-07)]_16_[-1(3.02e-11)]_\ 32 chrVIII:381434-382522 7.29e-01 100 chrXI:312832-314027 3.85e-12 22_[+1(1.12e-07)]_1_[-3(3.87e-11)]_\ 17 chrI:169475-171036 7.87e-01 100 chrXI:382715-384736 5.33e-01 100 chrXV:259352-259970 2.95e-01 100 chrXI:355366-356485 5.25e-01 100 chrII:197296-197830 1.19e-07 23_[-1(9.90e-12)]_47 chrII:36251-36612 5.59e-05 22_[-2(6.95e-09)]_58 chrIII:295326-296037 8.90e-01 100 chrV:311688-312276 8.43e-01 100 chrI:142178-143684 5.75e-01 100 chrVII:771783-772277 7.45e-01 100 chrI:141619-141917 3.14e-01 100 chrVIII:147617-148741 2.31e-01 100 chrV:42125-42656 8.12e-01 100 chrXII:371156-372900 8.10e-01 100 chrV:53567-53878 4.42e-01 100 chrXIII:287532-287709 3.77e-01 100 chrXIII:320938-321322 1.38e-05 67_[+1(1.32e-09)]_3 chrXI:558484-559493 9.84e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************