******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MGA2/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:81858-82383 1.0000 100 chrI:138965-139369 1.0000 100 chrI:166166-166564 1.0000 100 chrI:180919-181488 1.0000 100 chrI:182283-183182 1.0000 100 chrII:9366-10011 1.0000 100 chrII:35795-36849 1.0000 100 chrII:44938-45394 1.0000 100 chrII:45583-46376 1.0000 100 chrII:60783-61498 1.0000 100 chrII:88942-90450 1.0000 100 chrII:165075-165447 1.0000 100 chrII:167864-169636 1.0000 100 chrII:181276-181699 1.0000 100 chrII:197258-198279 1.0000 100 chrII:199419-200614 1.0000 100 chrII:226969-227369 1.0000 100 chrII:266191-266697 1.0000 100 chrII:326541-327078 1.0000 100 chrII:331778-332787 1.0000 100 chrII:347395-347937 1.0000 100 chrII:350614-351058 1.0000 100 chrII:405525-406264 1.0000 100 chrII:415483-415885 1.0000 100 chrII:476818-477750 1.0000 100 chrII:504530-504750 1.0000 100 chrII:592278-593427 1.0000 100 chrII:603740-607108 1.0000 100 chrII:642858-643434 1.0000 100 chrII:644939-645433 1.0000 100 chrIII:114-1047 1.0000 100 chrIII:11088-11407 1.0000 100 chrIII:30549-31002 1.0000 100 chrIII:58735-59010 1.0000 100 chrIII:81767-83491 1.0000 100 chrIII:90862-91137 1.0000 100 chrIII:123161-123821 1.0000 100 chrIII:127577-127896 1.0000 100 chrIII:142599-143015 1.0000 100 chrIII:149694-150166 1.0000 100 chrIII:150944-151570 1.0000 100 chrIII:163435-163895 1.0000 100 chrIII:168054-168546 1.0000 100 chrIII:178264-178731 1.0000 100 chrIII:227715-228272 1.0000 100 chrIII:295300-296033 1.0000 100 chrIV:31-348 1.0000 100 chrIV:83425-83824 1.0000 100 chrIV:117166-117688 1.0000 100 chrIV:129404-130993 1.0000 100 chrIV:216741-218074 1.0000 100 chrIV:221757-222407 1.0000 100 chrIV:229108-230435 1.0000 100 chrIV:307953-309454 1.0000 100 chrIV:321439-321972 1.0000 100 chrIV:322186-323531 1.0000 100 chrIV:341136-341648 1.0000 100 chrIV:358010-358480 1.0000 100 chrIV:359357-359812 1.0000 100 chrIV:409191-409672 1.0000 100 chrIV:410145-410770 1.0000 100 chrIV:411229-411672 1.0000 100 chrIV:434106-435048 1.0000 100 chrIV:437532-438211 1.0000 100 chrIV:488436-489133 1.0000 100 chrIV:490701-491277 1.0000 100 chrIV:519648-519955 1.0000 100 chrIV:520756-521173 1.0000 100 chrIV:538867-539199 1.0000 100 chrIV:568630-569782 1.0000 100 chrIV:578785-580730 1.0000 100 chrIV:619374-620322 1.0000 100 chrIV:644983-645393 1.0000 100 chrIV:667721-668218 1.0000 100 chrIV:758450-759585 1.0000 100 chrIV:802560-803031 1.0000 100 chrIV:835746-836323 1.0000 100 chrIV:884243-885329 1.0000 100 chrIV:946135-946631 1.0000 100 chrIV:980740-981226 1.0000 100 chrIV:992675-993487 1.0000 100 chrIV:1013397-1013949 1.0000 100 chrIV:1016945-1017493 1.0000 100 chrIV:1074974-1075853 1.0000 100 chrIV:1094767-1095668 1.0000 100 chrIV:1150693-1151158 1.0000 100 chrIV:1175594-1176084 1.0000 100 chrIV:1201527-1202093 1.0000 100 chrIV:1236565-1237973 1.0000 100 chrIV:1256862-1257311 1.0000 100 chrIV:1300270-1301356 1.0000 100 chrIV:1305392-1305888 1.0000 100 chrIV:1351873-1353381 1.0000 100 chrIV:1354478-1356042 1.0000 100 chrIV:1359418-1359920 1.0000 100 chrIV:1400724-1402087 1.0000 100 chrIV:1450794-1451650 1.0000 100 chrIV:1461377-1461992 1.0000 100 chrIX:68250-68936 1.0000 100 chrIX:99613-100208 1.0000 100 chrIX:174663-175424 1.0000 100 chrIX:183306-183812 1.0000 100 chrIX:197372-197876 1.0000 100 chrIX:210483-211248 1.0000 100 chrIX:248564-249004 1.0000 100 chrIX:254228-254568 1.0000 100 chrIX:257326-258124 1.0000 100 chrIX:299961-300496 1.0000 100 chrIX:316037-317646 1.0000 100 chrIX:322411-323219 1.0000 100 chrIX:323382-324393 1.0000 100 chrIX:325728-326219 1.0000 100 chrIX:336082-336638 1.0000 100 chrIX:370223-370613 1.0000 100 chrV:53503-53975 1.0000 100 chrV:61096-62172 1.0000 100 chrV:85117-86970 1.0000 100 chrV:99866-100332 1.0000 100 chrV:117517-118298 1.0000 100 chrV:130844-131414 1.0000 100 chrV:135143-136077 1.0000 100 chrV:138458-139773 1.0000 100 chrV:140207-140907 1.0000 100 chrV:176911-177455 1.0000 100 chrV:249715-250545 1.0000 100 chrV:270361-271031 1.0000 100 chrV:288159-288737 1.0000 100 chrV:305812-306920 1.0000 100 chrV:311735-312288 1.0000 100 chrV:354721-355393 1.0000 100 chrV:362131-363244 1.0000 100 chrV:396138-396596 1.0000 100 chrV:423043-424322 1.0000 100 chrV:431011-432127 1.0000 100 chrV:434388-435017 1.0000 100 chrV:435586-436001 1.0000 100 chrV:438296-438965 1.0000 100 chrV:441771-442669 1.0000 100 chrV:443006-443387 1.0000 100 chrV:469194-469676 1.0000 100 chrV:487073-487623 1.0000 100 chrV:492224-492559 1.0000 100 chrV:550367-551722 1.0000 100 chrVI:4598-4789 1.0000 100 chrVI:64234-65741 1.0000 100 chrVI:95467-95868 1.0000 100 chrVI:101098-101605 1.0000 100 chrVI:137206-137715 1.0000 100 chrVI:157840-158376 1.0000 100 chrVI:162044-162487 1.0000 100 chrVI:167219-167714 1.0000 100 chrVI:180668-181282 1.0000 100 chrVI:190478-191909 1.0000 100 chrVI:210465-210900 1.0000 100 chrVI:220798-222091 1.0000 100 chrVI:223319-224168 1.0000 100 chrVI:226582-226975 1.0000 100 chrVII:269-932 1.0000 100 chrVII:110083-110791 1.0000 100 chrVII:115329-115770 1.0000 100 chrVII:122063-122416 1.0000 100 chrVII:148023-149583 1.0000 100 chrVII:177690-178511 1.0000 100 chrVII:185516-186155 1.0000 100 chrVII:205324-205791 1.0000 100 chrVII:254124-254694 1.0000 100 chrVII:277007-278693 1.0000 100 chrVII:287076-287756 1.0000 100 chrVII:310480-312201 1.0000 100 chrVII:319238-320179 1.0000 100 chrVII:328364-329114 1.0000 100 chrVII:364907-366541 1.0000 100 chrVII:371201-371533 1.0000 100 chrVII:405460-405851 1.0000 100 chrVII:411897-412592 1.0000 100 chrVII:422890-423580 1.0000 100 chrVII:437225-439644 1.0000 100 chrVII:440501-440989 1.0000 100 chrVII:531310-531824 1.0000 100 chrVII:533961-535197 1.0000 100 chrVII:541700-542317 1.0000 100 chrVII:544407-544855 1.0000 100 chrVII:555113-555850 1.0000 100 chrVII:561474-561739 1.0000 100 chrVII:648804-649373 1.0000 100 chrVII:649749-650179 1.0000 100 chrVII:661532-661952 1.0000 100 chrVII:700380-701251 1.0000 100 chrVII:706926-707188 1.0000 100 chrVII:726197-726773 1.0000 100 chrVII:730964-731484 1.0000 100 chrVII:736171-736631 1.0000 100 chrVII:738882-739532 1.0000 100 chrVII:774161-774738 1.0000 100 chrVII:779380-779922 1.0000 100 chrVII:788225-788755 1.0000 100 chrVII:788989-789285 1.0000 100 chrVII:794252-794585 1.0000 100 chrVII:823341-823722 1.0000 100 chrVII:828311-828988 1.0000 100 chrVII:845445-846095 1.0000 100 chrVII:856676-856944 1.0000 100 chrVII:857200-857644 1.0000 100 chrVII:876195-877482 1.0000 100 chrVII:878535-879046 1.0000 100 chrVII:882449-883327 1.0000 100 chrVII:930851-931652 1.0000 100 chrVII:1000341-1000610 1.0000 100 chrVII:1003968-1004409 1.0000 100 chrVIII:34517-35146 1.0000 100 chrVIII:62515-62934 1.0000 100 chrVIII:74737-75949 1.0000 100 chrVIII:103799-104706 1.0000 100 chrVIII:115850-116385 1.0000 100 chrVIII:120205-121685 1.0000 100 chrVIII:125883-126670 1.0000 100 chrVIII:133970-134813 1.0000 100 chrVIII:145858-146476 1.0000 100 chrVIII:148910-149274 1.0000 100 chrVIII:174635-175378 1.0000 100 chrVIII:237749-238136 1.0000 100 chrVIII:296666-297241 1.0000 100 chrVIII:358263-358784 1.0000 100 chrVIII:381525-382434 1.0000 100 chrVIII:382738-383366 1.0000 100 chrVIII:388630-389006 1.0000 100 chrVIII:411004-411640 1.0000 100 chrVIII:452077-453049 1.0000 100 chrVIII:466808-467316 1.0000 100 chrVIII:475508-475912 1.0000 100 chrVIII:505792-506303 1.0000 100 chrVIII:562400-562568 1.0000 100 chrX:59012-59366 1.0000 100 chrX:73357-74730 1.0000 100 chrX:74897-76974 1.0000 100 chrX:89982-90454 1.0000 100 chrX:115754-116232 1.0000 100 chrX:139342-140281 1.0000 100 chrX:157433-157897 1.0000 100 chrX:197198-197446 1.0000 100 chrX:204537-204962 1.0000 100 chrX:227772-228617 1.0000 100 chrX:233383-234201 1.0000 100 chrX:353980-354496 1.0000 100 chrX:355188-355768 1.0000 100 chrX:374213-374820 1.0000 100 chrX:378180-378567 1.0000 100 chrX:390791-391263 1.0000 100 chrX:391797-392229 1.0000 100 chrX:396565-396950 1.0000 100 chrX:397111-397384 1.0000 100 chrX:414316-415213 1.0000 100 chrX:415708-416228 1.0000 100 chrX:422730-423588 1.0000 100 chrX:424267-424707 1.0000 100 chrX:517639-518089 1.0000 100 chrX:523821-524326 1.0000 100 chrX:531580-532252 1.0000 100 chrX:538017-538860 1.0000 100 chrX:540954-541798 1.0000 100 chrX:542758-543258 1.0000 100 chrX:607883-608184 1.0000 100 chrX:617700-618297 1.0000 100 chrX:651089-651656 1.0000 100 chrX:690594-690896 1.0000 100 chrX:702947-703689 1.0000 100 chrX:745020-745726 1.0000 100 chrXI:46717-46995 1.0000 100 chrXI:67793-68032 1.0000 100 chrXI:74419-74918 1.0000 100 chrXI:83964-84473 1.0000 100 chrXI:99723-99949 1.0000 100 chrXI:108262-109220 1.0000 100 chrXI:109375-109578 1.0000 100 chrXI:139751-140266 1.0000 100 chrXI:140530-141479 1.0000 100 chrXI:158210-158636 1.0000 100 chrXI:162196-162731 1.0000 100 chrXI:202491-203304 1.0000 100 chrXI:219654-220141 1.0000 100 chrXI:302697-303220 1.0000 100 chrXI:307958-308458 1.0000 100 chrXI:313087-314042 1.0000 100 chrXI:326117-327444 1.0000 100 chrXI:379679-380084 1.0000 100 chrXI:382187-382473 1.0000 100 chrXI:431351-431682 1.0000 100 chrXI:457931-459148 1.0000 100 chrXI:490746-491245 1.0000 100 chrXI:513140-513610 1.0000 100 chrXI:517789-518173 1.0000 100 chrXI:519858-520352 1.0000 100 chrXI:578778-579619 1.0000 100 chrXI:618727-619370 1.0000 100 chrXI:666405-666704 1.0000 100 chrXII:11146-11519 1.0000 100 chrXII:47872-49151 1.0000 100 chrXII:92335-92732 1.0000 100 chrXII:167770-168241 1.0000 100 chrXII:198650-199735 1.0000 100 chrXII:201643-202790 1.0000 100 chrXII:214000-214332 1.0000 100 chrXII:214626-215070 1.0000 100 chrXII:232026-234010 1.0000 100 chrXII:241608-242041 1.0000 100 chrXII:261831-263936 1.0000 100 chrXII:282571-283921 1.0000 100 chrXII:366033-366594 1.0000 100 chrXII:373947-374656 1.0000 100 chrXII:424175-424479 1.0000 100 chrXII:426913-427482 1.0000 100 chrXII:448519-448856 1.0000 100 chrXII:459588-460763 1.0000 100 chrXII:498481-500124 1.0000 100 chrXII:521702-521966 1.0000 100 chrXII:522132-523309 1.0000 100 chrXII:592145-593021 1.0000 100 chrXII:605128-605648 1.0000 100 chrXII:628187-628757 1.0000 100 chrXII:636810-639980 1.0000 100 chrXII:656834-657211 1.0000 100 chrXII:673500-674740 1.0000 100 chrXII:687657-687913 1.0000 100 chrXII:710534-710867 1.0000 100 chrXII:713150-713860 1.0000 100 chrXII:731400-732314 1.0000 100 chrXII:734445-734981 1.0000 100 chrXII:781018-781908 1.0000 100 chrXII:784053-784531 1.0000 100 chrXII:793657-795360 1.0000 100 chrXII:795596-797453 1.0000 100 chrXII:818498-819490 1.0000 100 chrXII:837765-839408 1.0000 100 chrXII:875066-875682 1.0000 100 chrXII:897651-899638 1.0000 100 chrXII:921682-922724 1.0000 100 chrXII:932054-932521 1.0000 100 chrXII:962826-963327 1.0000 100 chrXII:975748-976198 1.0000 100 chrXII:1017865-1019430 1.0000 100 chrXII:1028166-1028606 1.0000 100 chrXII:1029111-1029918 1.0000 100 chrXII:1051890-1052229 1.0000 100 chrXIII:91412-92091 1.0000 100 chrXIII:131622-132115 1.0000 100 chrXIII:145782-147687 1.0000 100 chrXIII:162961-164275 1.0000 100 chrXIII:168236-169067 1.0000 100 chrXIII:183794-183969 1.0000 100 chrXIII:195937-196314 1.0000 100 chrXIII:225267-225902 1.0000 100 chrXIII:253382-253605 1.0000 100 chrXIII:258984-259463 1.0000 100 chrXIII:290475-291316 1.0000 100 chrXIII:296739-298983 1.0000 100 chrXIII:302870-303143 1.0000 100 chrXIII:320905-321333 1.0000 100 chrXIII:351921-353005 1.0000 100 chrXIII:362930-363662 1.0000 100 chrXIII:372178-372658 1.0000 100 chrXIII:378998-379640 1.0000 100 chrXIII:420320-420866 1.0000 100 chrXIII:463346-463893 1.0000 100 chrXIII:480385-480838 1.0000 100 chrXIII:504894-505293 1.0000 100 chrXIII:550936-552214 1.0000 100 chrXIII:572257-573800 1.0000 100 chrXIII:586397-586902 1.0000 100 chrXIII:625885-627366 1.0000 100 chrXIII:671904-672608 1.0000 100 chrXIII:672801-674821 1.0000 100 chrXIII:731634-732537 1.0000 100 chrXIII:747719-748138 1.0000 100 chrXIII:748296-748513 1.0000 100 chrXIII:753307-755120 1.0000 100 chrXIII:768192-768439 1.0000 100 chrXIII:808029-808547 1.0000 100 chrXIII:837247-837429 1.0000 100 chrXIII:837715-838257 1.0000 100 chrXIII:861202-861390 1.0000 100 chrXIII:872633-872923 1.0000 100 chrXIV:61973-64530 1.0000 100 chrXIV:95991-96534 1.0000 100 chrXIV:102567-103110 1.0000 100 chrXIV:104583-105125 1.0000 100 chrXIV:241372-241980 1.0000 100 chrXIV:302604-303885 1.0000 100 chrXIV:330785-331123 1.0000 100 chrXIV:374637-375154 1.0000 100 chrXIV:442782-444843 1.0000 100 chrXIV:493944-495598 1.0000 100 chrXIV:499211-500746 1.0000 100 chrXIV:525064-525301 1.0000 100 chrXIV:546562-547429 1.0000 100 chrXIV:560302-560868 1.0000 100 chrXIV:568003-569006 1.0000 100 chrXIV:569516-570161 1.0000 100 chrXIV:602106-602597 1.0000 100 chrXIV:631504-632135 1.0000 100 chrXIV:632419-632825 1.0000 100 chrXIV:725637-726344 1.0000 100 chrXIV:783543-784318 1.0000 100 chrXV:79702-80165 1.0000 100 chrXV:92836-94815 1.0000 100 chrXV:110859-111208 1.0000 100 chrXV:113585-113927 1.0000 100 chrXV:161069-161503 1.0000 100 chrXV:167955-169563 1.0000 100 chrXV:216274-216725 1.0000 100 chrXV:226463-226954 1.0000 100 chrXV:227838-228580 1.0000 100 chrXV:253783-254152 1.0000 100 chrXV:274462-274996 1.0000 100 chrXV:281709-282385 1.0000 100 chrXV:287540-288432 1.0000 100 chrXV:300899-301390 1.0000 100 chrXV:340135-340740 1.0000 100 chrXV:353689-354307 1.0000 100 chrXV:438451-438998 1.0000 100 chrXV:444665-446140 1.0000 100 chrXV:464270-464867 1.0000 100 chrXV:487429-487893 1.0000 100 chrXV:505052-505524 1.0000 100 chrXV:514340-514712 1.0000 100 chrXV:571496-572151 1.0000 100 chrXV:594233-594674 1.0000 100 chrXV:639188-639422 1.0000 100 chrXV:663411-664476 1.0000 100 chrXV:678658-679245 1.0000 100 chrXV:710117-710928 1.0000 100 chrXV:779307-779503 1.0000 100 chrXV:779660-780942 1.0000 100 chrXV:853427-854781 1.0000 100 chrXV:866367-867635 1.0000 100 chrXV:897040-898225 1.0000 100 chrXV:925185-925437 1.0000 100 chrXV:961179-963131 1.0000 100 chrXV:968127-968457 1.0000 100 chrXV:976269-976688 1.0000 100 chrXV:978777-979181 1.0000 100 chrXV:980153-981452 1.0000 100 chrXV:1004100-1004942 1.0000 100 chrXV:1025678-1026051 1.0000 100 chrXV:1027944-1029106 1.0000 100 chrXV:1029303-1029479 1.0000 100 chrXVI:55826-56433 1.0000 100 chrXVI:75493-77285 1.0000 100 chrXVI:134844-135827 1.0000 100 chrXVI:188575-189242 1.0000 100 chrXVI:210058-210493 1.0000 100 chrXVI:243785-244225 1.0000 100 chrXVI:281555-282978 1.0000 100 chrXVI:302632-304786 1.0000 100 chrXVI:338688-339178 1.0000 100 chrXVI:378620-379027 1.0000 100 chrXVI:406169-406611 1.0000 100 chrXVI:433301-434074 1.0000 100 chrXVI:435627-436195 1.0000 100 chrXVI:520093-520552 1.0000 100 chrXVI:559851-560299 1.0000 100 chrXVI:571952-572589 1.0000 100 chrXVI:579943-580935 1.0000 100 chrXVI:581852-582287 1.0000 100 chrXVI:622064-623131 1.0000 100 chrXVI:689320-689888 1.0000 100 chrXVI:699906-700639 1.0000 100 chrXVI:731622-732542 1.0000 100 chrXVI:744057-744656 1.0000 100 chrXVI:769034-769490 1.0000 100 chrXVI:775640-776112 1.0000 100 chrXVI:794442-795976 1.0000 100 chrXVI:810573-811256 1.0000 100 chrXVI:819151-820232 1.0000 100 chrXVI:856730-857145 1.0000 100 chrXVI:860145-860687 1.0000 100 chrXVI:880085-880557 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MGA2/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MGA2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MGA2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 476 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 47600 N= 476 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.302 C 0.198 G 0.198 T 0.302 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MGA2/background): A 0.311 C 0.189 G 0.189 T 0.311 ******************************************************************************** ******************************************************************************** MOTIF MBSGGRRTCGAACCSVKGAYCTYMVSRTT MEME-1 width = 29 sites = 81 llr = 1626 E-value = 5.8e-354 ******************************************************************************** -------------------------------------------------------------------------------- Motif MBSGGRRTCGAACCSVKGAYCTYMVSRTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3::2:65:::aa:::3:26:::132:511 pos.-specific C 534:::1:7:::a7541::6734543111 probability G 1457a42::a::::33571:111:26313 matrix T :2::::2a3::::21:3:3426422::86 bits 2.4 * * 2.2 * * * 1.9 * * * 1.7 * * **** Relative 1.4 * ****** Entropy 1.2 *** ******* * * * (29.0 bits) 1.0 **** ******* * ** * 0.7 ***** ******** * *** * * 0.5 ****** **************** *** 0.2 ****** ********************** 0.0 ----------------------------- Multilevel CGGGGAATCGAACCCCGGACCTCCCGATT consensus ACC GG T GGTATT CTAACG G sequence T A TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRRTCGAACCSVKGAYCTYMVSRTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXI:140530-141479 + 72 1.53e-13 AACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTG chrX:115754-116232 + 4 1.53e-13 ATA CGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrV:487073-487623 + 41 1.53e-13 TACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrV:176911-177455 - 1 1.53e-13 TACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTG chrIX:197372-197876 - 53 1.53e-13 AACTCCGAAG CGGGGAGTCGAACCCCGGTCTCCACGGTG AGAACGTGAT chrIV:1016945-1017493 + 46 1.53e-13 AACTCCGAAG CGGGGAGTCGAACCCCGGTCTCCACGGTG AGAACGTGAT chrII:644939-645433 - 66 1.53e-13 CCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrXVI:880085-880557 + 33 4.43e-13 AATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrXIV:602106-602597 - 48 4.43e-13 AATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrXII:1051890-1052229 + 70 4.43e-13 AATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTT AT chrVII:738882-739532 - 2 4.43e-13 AATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTT A chrV:443006-443387 + 64 4.43e-13 TATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTT ATTAGCAC chrXVI:860145-860687 - 47 2.99e-12 TCTGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrX:396565-396950 + 27 2.99e-12 AATGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrVI:180668-181282 + 57 2.99e-12 ACTGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrVI:162044-162487 - 47 2.99e-12 ACTGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrIV:83425-83824 - 8 2.99e-12 CTTGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATG GCAACGT chrXIII:480385-480838 + 68 1.40e-11 GAAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATT AAGA chrXII:448519-448856 + 21 1.40e-11 GAAGGTCCTA CCCGGATTCGAACCGGGGTTGTCCGGATC AAAACCGAAA chrVIII:133970-134813 - 15 1.40e-11 AAAGGTCCTA CCCGGATTCGAACCGGGGTTGTCCGGATC AAAACCGAAA chrV:435586-436001 + 17 1.40e-11 AAAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrIX:299961-300496 + 58 1.40e-11 ATAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrIV:1201527-1202093 - 26 1.40e-11 TTAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrIV:644983-645393 + 23 1.40e-11 AAAGGTCCTA CCCGGATTCGAACCGGGGTTGTCCGGATC AAAACCGAAA chrIII:168054-168546 + 59 1.40e-11 AAAGGTCCTA CCCGGATTCGAACCGGGGTTGTCCGGATC AAAACCGAAA chrV:311735-312288 + 70 2.68e-11 ATTGGACGCA ACCGGAATCGAACCGATGACCTCTTCCTT GC chrV:130844-131414 + 11 2.68e-11 ATAGGTCTTA CCCGGATTCGAACCGGGGTTGTTCGGATC AAAACCGAAA chrXIII:747719-748138 + 22 4.40e-11 AACACTCACG ATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrXIII:131622-132115 + 15 4.40e-11 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrX:374213-374820 + 48 4.40e-11 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrVII:736171-736631 - 24 4.40e-11 AACACTCACG ATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrII:405525-406264 - 69 4.40e-11 ACG ATGGGGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrXVI:769034-769490 + 3 1.26e-10 AT AGGGGGCTCGAACCCCTGACATTTCGGTA TCCTTGCTTA chrXV:438451-438998 - 28 1.26e-10 AACTCCTCAT AGGGGGCTCGAACCCCTGACATTTCGGTA TCCTTGCTTA chrVII:115329-115770 - 48 1.26e-10 AACTCCTCAT AGGGGGCTCGAACCCCTGACATTTCGGTA TCCTTGCTTA chrXV:300899-301390 - 68 1.41e-10 CGAG CTGGGAATTGAACCCAGGGCCTCTCGCAT GCTTTGTCTC chrXIII:195937-196314 + 1 1.41e-10 . CTGGGAATTGAACCCAGGGCCTCTCGCAT GCTTTGTCTT chrVIII:475508-475912 + 54 1.58e-10 AATGTTCCAA CCGAGGATCGAACTCGGGACCTTTGCCGT GTGAAGGCAA chrXIV:104583-105125 - 37 1.97e-10 TATGCTTCCA ATCGGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrVIII:115850-116385 + 48 1.97e-10 AATGCTTCCA ATCGGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrII:266191-266697 - 20 1.97e-10 AATGCTTCCA ATCGGATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrXIII:808029-808547 + 16 2.19e-10 GAAGGTCCCA CCCGGATTCGAACTGGGGTTGTTCGGATC AGAACCGAAA chrIV:488436-489133 + 71 2.44e-10 TCTGATCCAA CCGAGGTTCGAACTCGGGATCTTCGCCGT G chrII:326541-327078 + 41 2.44e-10 TTTGATCCAA CCGAGGTTCGAACTCGGGATCTTCGCCGT GTAAAGGCGA chrXIV:95991-96534 + 37 4.12e-10 TTTGAGCGGT ACGAGAATCGAACCCGTGTCCCCACCTTG GAAGGGTGGG chrVII:779380-779922 - 50 4.12e-10 CTTGAGCGGT ACGAGAATCGAACCCGTGTCCCCACCTTG GAAGGGTGGG chrXIII:586397-586902 + 45 4.56e-10 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXIII:420320-420866 + 53 4.56e-10 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrVII:823341-823722 - 38 4.56e-10 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXVI:622064-623131 + 1 9.12e-10 . CTGTGGATCGAACACAGGACCTCCAGATA ACTTGACCGA chrVIII:358263-358784 + 13 9.12e-10 TATGCGAATT CTGTGGATCGAACACAGGACCTCCAGATA ACTTGACCGA chrVII:440501-440989 + 29 9.12e-10 TATGCGAATT CTGTGGATCGAACACAGGACCTCCAGATA ACTTGACCGA chrXIII:837715-838257 - 44 1.46e-09 TATCTCCCGG GGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGGT chrX:542758-543258 + 6 1.46e-09 CCCGG GGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGAT chrIV:946135-946631 - 31 1.46e-09 AATCTCCCGG GGGCGAGTCGAACGCCCGATCTCAAGATT TCGTAGTGAT chrXI:490746-491245 - 59 1.75e-09 TTCTTCCCCG CCAGGACTTGAACCTGGAATCTTCTGGTT CGTAGCCAGA chrV:492224-492559 + 19 1.75e-09 TCCTTCCCCG CCAGGACTTGAACCTGGAATCTTCTGGTT CGTAGCCAGA chrXIII:463346-463893 - 20 2.51e-09 ATCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrXII:426913-427482 - 20 2.51e-09 TTCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrXI:513140-513610 + 15 2.51e-09 ATCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrX:355188-355768 - 63 2.51e-09 TCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrX:204537-204962 - 71 2.51e-09 A CGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrVII:544407-544855 + 4 2.51e-09 CGA CGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrIX:336082-336638 + 47 2.51e-09 ATCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrXVI:856730-857145 - 51 2.74e-09 AATGGACGAG TCCGGAATCGAACCGGAGACCTCTCCCAT GCTAAGGGAG chrXV:976269-976688 - 29 2.74e-09 ATTGCTCCAG GGGAGGTTCGAACTCTCGACCTTCAGATT ATGAGACTGA chrX:197198-197446 + 49 2.74e-09 ATTGGACGAG TCCGGAATCGAACCGGAGACCTCTCCCAT GCTAAGGGAG chrIV:410145-410770 - 8 2.74e-09 TTTGGACGAG TCCGGAATCGAACCGGAGACCTCTCCCAT GCTAAGG chrXIII:378998-379640 + 42 3.55e-09 ATTGAAACGG ACAGGAATTGAACCTGCAACCCTTCGATT GCAATCTTAT chrX:415708-416228 + 21 3.55e-09 ATTGAAACGG ACAGGAATTGAACCTGCAACCCTTCGATT GCAATCTTAT chrXIV:632419-632825 - 64 5.40e-09 CGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrXII:975748-976198 + 68 5.40e-09 AACGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATT AACA chrXI:74419-74918 - 43 5.40e-09 AGCGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrIII:127577-127896 - 67 5.40e-09 CCCCA GTGAGGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrVIII:466808-467316 - 13 1.49e-08 AATGCCACCT GCCAGAATTGAACTAGCGACCTTTGCATT ACAAGTGCAA chrXVI:435627-436195 + 40 3.28e-08 AAAGCTCGCA CTCAGGATCGAACTAAGGACCAACAGATT TGCAATCTGC chrX:517639-518089 + 7 3.76e-08 GCGCCG CTCGGTTTCGATCCGAGGACATCAGGGTT ATGAGCCCTG chrXVI:744057-744656 - 13 4.30e-08 TTTGCCACCT GTCAGAATTGAACTAACGACCTTTGCATT ACAAGTGCAA chrII:347395-347937 + 45 9.24e-08 CGGTTGTCCG CGCGAGTTCGAACCTCGCATCCTTCAGTA ATATTTTTTT chrII:9366-10011 + 3 9.24e-08 CG CGCGAGTTCGAACCTCGCATCCTTCAGTA TTTTTTTTGA chrIV:519648-519955 + 50 9.82e-08 CGGTTGTCCG CGCGAGTTCGAACCTCGCATCCTTCAATA ACTTATTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRRTCGAACCSVKGAYCTYMVSRTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXI:140530-141479 1.5e-13 71_[+1] chrX:115754-116232 1.5e-13 3_[+1]_68 chrV:487073-487623 1.5e-13 40_[+1]_31 chrV:176911-177455 1.5e-13 [-1]_71 chrIX:197372-197876 1.5e-13 52_[-1]_19 chrIV:1016945-1017493 1.5e-13 45_[+1]_26 chrII:644939-645433 1.5e-13 65_[-1]_6 chrXVI:880085-880557 4.4e-13 32_[+1]_39 chrXIV:602106-602597 4.4e-13 47_[-1]_24 chrXII:1051890-1052229 4.4e-13 69_[+1]_2 chrVII:738882-739532 4.4e-13 1_[-1]_70 chrV:443006-443387 4.4e-13 63_[+1]_8 chrXVI:860145-860687 3e-12 46_[-1]_25 chrX:396565-396950 3e-12 26_[+1]_45 chrVI:180668-181282 3e-12 56_[+1]_15 chrVI:162044-162487 3e-12 46_[-1]_25 chrIV:83425-83824 3e-12 7_[-1]_64 chrXIII:480385-480838 1.4e-11 67_[+1]_4 chrXII:448519-448856 1.4e-11 20_[+1]_51 chrVIII:133970-134813 1.4e-11 14_[-1]_57 chrV:435586-436001 1.4e-11 16_[+1]_55 chrIX:299961-300496 1.4e-11 57_[+1]_14 chrIV:1201527-1202093 1.4e-11 25_[-1]_46 chrIV:644983-645393 1.4e-11 22_[+1]_49 chrIII:168054-168546 1.4e-11 58_[+1]_13 chrV:311735-312288 2.7e-11 69_[+1]_2 chrV:130844-131414 2.7e-11 10_[+1]_61 chrXIII:747719-748138 4.4e-11 21_[+1]_50 chrXIII:131622-132115 4.4e-11 14_[+1]_57 chrX:374213-374820 4.4e-11 47_[+1]_24 chrVII:736171-736631 4.4e-11 23_[-1]_48 chrII:405525-406264 4.4e-11 68_[-1]_3 chrXVI:769034-769490 1.3e-10 2_[+1]_69 chrXV:438451-438998 1.3e-10 27_[-1]_44 chrVII:115329-115770 1.3e-10 47_[-1]_24 chrXV:300899-301390 1.4e-10 67_[-1]_4 chrXIII:195937-196314 1.4e-10 [+1]_71 chrVIII:475508-475912 1.6e-10 53_[+1]_18 chrXIV:104583-105125 2e-10 36_[-1]_35 chrVIII:115850-116385 2e-10 47_[+1]_24 chrII:266191-266697 2e-10 19_[-1]_52 chrXIII:808029-808547 2.2e-10 15_[+1]_56 chrIV:488436-489133 2.4e-10 70_[+1]_1 chrII:326541-327078 2.4e-10 40_[+1]_31 chrXIV:95991-96534 4.1e-10 36_[+1]_35 chrVII:779380-779922 4.1e-10 49_[-1]_22 chrXIII:586397-586902 4.6e-10 44_[+1]_27 chrXIII:420320-420866 4.6e-10 52_[+1]_19 chrVII:823341-823722 4.6e-10 37_[-1]_34 chrXVI:622064-623131 9.1e-10 [+1]_71 chrVIII:358263-358784 9.1e-10 12_[+1]_59 chrVII:440501-440989 9.1e-10 28_[+1]_43 chrXIII:837715-838257 1.5e-09 43_[-1]_28 chrX:542758-543258 1.5e-09 5_[+1]_66 chrIV:946135-946631 1.5e-09 30_[-1]_41 chrXI:490746-491245 1.8e-09 58_[-1]_13 chrV:492224-492559 1.8e-09 18_[+1]_53 chrXIII:463346-463893 2.5e-09 19_[-1]_52 chrXII:426913-427482 2.5e-09 19_[-1]_52 chrXI:513140-513610 2.5e-09 14_[+1]_57 chrX:355188-355768 2.5e-09 62_[-1]_9 chrX:204537-204962 2.5e-09 70_[-1]_1 chrVII:544407-544855 2.5e-09 3_[+1]_68 chrIX:336082-336638 2.5e-09 46_[+1]_25 chrXVI:856730-857145 2.7e-09 50_[-1]_21 chrXV:976269-976688 2.7e-09 28_[-1]_43 chrX:197198-197446 2.7e-09 48_[+1]_23 chrIV:410145-410770 2.7e-09 7_[-1]_64 chrXIII:378998-379640 3.6e-09 41_[+1]_30 chrX:415708-416228 3.6e-09 20_[+1]_51 chrXIV:632419-632825 5.4e-09 63_[-1]_8 chrXII:975748-976198 5.4e-09 67_[+1]_4 chrXI:74419-74918 5.4e-09 42_[-1]_29 chrIII:127577-127896 5.4e-09 66_[-1]_5 chrVIII:466808-467316 1.5e-08 12_[-1]_59 chrXVI:435627-436195 3.3e-08 39_[+1]_32 chrX:517639-518089 3.8e-08 6_[+1]_65 chrXVI:744057-744656 4.3e-08 12_[-1]_59 chrII:347395-347937 9.2e-08 44_[+1]_27 chrII:9366-10011 9.2e-08 2_[+1]_69 chrIV:519648-519955 9.8e-08 49_[+1]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRRTCGAACCSVKGAYCTYMVSRTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MBSGGRRTCGAACCSVKGAYCTYMVSRTT width=29 seqs=81 chrXI:140530-141479 ( 72) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrX:115754-116232 ( 4) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrV:487073-487623 ( 41) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrV:176911-177455 ( 1) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrIX:197372-197876 ( 53) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrIV:1016945-1017493 ( 46) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrII:644939-645433 ( 66) CGGGGAGTCGAACCCCGGTCTCCACGGTG 1 chrXVI:880085-880557 ( 33) AGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrXIV:602106-602597 ( 48) AGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrXII:1051890-1052229 ( 70) AGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrVII:738882-739532 ( 2) AGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrV:443006-443387 ( 64) AGCGGGATCGAACCGCTGATCCCCGCGTT 1 chrXVI:860145-860687 ( 47) CCCGGAATCGAACCGGGGGCCCAACGATG 1 chrX:396565-396950 ( 27) CCCGGAATCGAACCGGGGGCCCAACGATG 1 chrVI:180668-181282 ( 57) CCCGGAATCGAACCGGGGGCCCAACGATG 1 chrVI:162044-162487 ( 47) CCCGGAATCGAACCGGGGGCCCAACGATG 1 chrIV:83425-83824 ( 8) CCCGGAATCGAACCGGGGGCCCAACGATG 1 chrXIII:480385-480838 ( 68) AGGGGGCTCGAACCCCTAACCTTATGATT 1 chrXII:448519-448856 ( 21) CCCGGATTCGAACCGGGGTTGTCCGGATC 1 chrVIII:133970-134813 ( 15) CCCGGATTCGAACCGGGGTTGTCCGGATC 1 chrV:435586-436001 ( 17) AGGGGGCTCGAACCCCTAACCTTATGATT 1 chrIX:299961-300496 ( 58) AGGGGGCTCGAACCCCTAACCTTATGATT 1 chrIV:1201527-1202093 ( 26) AGGGGGCTCGAACCCCTAACCTTATGATT 1 chrIV:644983-645393 ( 23) CCCGGATTCGAACCGGGGTTGTCCGGATC 1 chrIII:168054-168546 ( 59) CCCGGATTCGAACCGGGGTTGTCCGGATC 1 chrV:311735-312288 ( 70) ACCGGAATCGAACCGATGACCTCTTCCTT 1 chrV:130844-131414 ( 11) CCCGGATTCGAACCGGGGTTGTTCGGATC 1 chrXIII:747719-748138 ( 22) ATGGGGGTCGAACCCATAATCTTCTGATT 1 chrXIII:131622-132115 ( 15) ATGGGGGTCGAACCCATAATCTTCTGATT 1 chrX:374213-374820 ( 48) ATGGGGGTCGAACCCATAATCTTCTGATT 1 chrVII:736171-736631 ( 24) ATGGGGGTCGAACCCATAATCTTCTGATT 1 chrII:405525-406264 ( 69) ATGGGGGTCGAACCCATAATCTTCTGATT 1 chrXVI:769034-769490 ( 3) AGGGGGCTCGAACCCCTGACATTTCGGTA 1 chrXV:438451-438998 ( 28) AGGGGGCTCGAACCCCTGACATTTCGGTA 1 chrVII:115329-115770 ( 48) AGGGGGCTCGAACCCCTGACATTTCGGTA 1 chrXV:300899-301390 ( 68) CTGGGAATTGAACCCAGGGCCTCTCGCAT 1 chrXIII:195937-196314 ( 1) CTGGGAATTGAACCCAGGGCCTCTCGCAT 1 chrVIII:475508-475912 ( 54) CCGAGGATCGAACTCGGGACCTTTGCCGT 1 chrXIV:104583-105125 ( 37) ATCGGATTTGAACCGATGATCTCCACATT 1 chrVIII:115850-116385 ( 48) ATCGGATTTGAACCGATGATCTCCACATT 1 chrII:266191-266697 ( 20) ATCGGATTTGAACCGATGATCTCCACATT 1 chrXIII:808029-808547 ( 16) CCCGGATTCGAACTGGGGTTGTTCGGATC 1 chrIV:488436-489133 ( 71) CCGAGGTTCGAACTCGGGATCTTCGCCGT 1 chrII:326541-327078 ( 41) CCGAGGTTCGAACTCGGGATCTTCGCCGT 1 chrXIV:95991-96534 ( 37) ACGAGAATCGAACCCGTGTCCCCACCTTG 1 chrVII:779380-779922 ( 50) ACGAGAATCGAACCCGTGTCCCCACCTTG 1 chrXIII:586397-586902 ( 45) CCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrXIII:420320-420866 ( 53) CCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrVII:823341-823722 ( 38) CCCAGGATCGAACTGGGGACGTTCTGCGT 1 chrXVI:622064-623131 ( 1) CTGTGGATCGAACACAGGACCTCCAGATA 1 chrVIII:358263-358784 ( 13) CTGTGGATCGAACACAGGACCTCCAGATA 1 chrVII:440501-440989 ( 29) CTGTGGATCGAACACAGGACCTCCAGATA 1 chrXIII:837715-838257 ( 44) GGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrX:542758-543258 ( 6) GGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrIV:946135-946631 ( 31) GGGCGAGTCGAACGCCCGATCTCAAGATT 1 chrXI:490746-491245 ( 59) CCAGGACTTGAACCTGGAATCTTCTGGTT 1 chrV:492224-492559 ( 19) CCAGGACTTGAACCTGGAATCTTCTGGTT 1 chrXIII:463346-463893 ( 20) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrXII:426913-427482 ( 20) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrXI:513140-513610 ( 15) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrX:355188-355768 ( 63) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrX:204537-204962 ( 71) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrVII:544407-544855 ( 4) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrIX:336082-336638 ( 47) CGGGGAATTGAACCCCGATCTGGCACGCG 1 chrXVI:856730-857145 ( 51) TCCGGAATCGAACCGGAGACCTCTCCCAT 1 chrXV:976269-976688 ( 29) GGGAGGTTCGAACTCTCGACCTTCAGATT 1 chrX:197198-197446 ( 49) TCCGGAATCGAACCGGAGACCTCTCCCAT 1 chrIV:410145-410770 ( 8) TCCGGAATCGAACCGGAGACCTCTCCCAT 1 chrXIII:378998-379640 ( 42) ACAGGAATTGAACCTGCAACCCTTCGATT 1 chrX:415708-416228 ( 21) ACAGGAATTGAACCTGCAACCCTTCGATT 1 chrXIV:632419-632825 ( 64) GTGAGGGTTGAACTCACGATCTTGCGATT 1 chrXII:975748-976198 ( 68) GTGAGGGTTGAACTCACGATCTTGCGATT 1 chrXI:74419-74918 ( 43) GTGAGGGTTGAACTCACGATCTTGCGATT 1 chrIII:127577-127896 ( 67) GTGAGGGTTGAACTCACGATCTTGCGATT 1 chrVIII:466808-467316 ( 13) GCCAGAATTGAACTAGCGACCTTTGCATT 1 chrXVI:435627-436195 ( 40) CTCAGGATCGAACTAAGGACCAACAGATT 1 chrX:517639-518089 ( 7) CTCGGTTTCGATCCGAGGACATCAGGGTT 1 chrXVI:744057-744656 ( 13) GTCAGAATTGAACTAACGACCTTTGCATT 1 chrII:347395-347937 ( 45) CGCGAGTTCGAACCTCGCATCCTTCAGTA 1 chrII:9366-10011 ( 3) CGCGAGTTCGAACCTCGCATCCTTCAGTA 1 chrIV:519648-519955 ( 50) CGCGAGTTCGAACCTCGCATCCTTCAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRRTCGAACCSVKGAYCTYMVSRTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 34272 bayes= 10.2055 E= 5.8e-354 -1 149 -61 -307 -1298 87 111 -34 -266 111 153 -1298 -66 -235 195 -307 -307 -1298 235 -1298 83 -1298 120 -465 55 -76 32 -66 -1298 -1298 -1298 168 -1298 195 -1298 -20 -1298 -1298 241 -1298 168 -1298 -1298 -1298 166 -1298 -1298 -465 -1298 241 -1298 -1298 -307 197 -235 -75 -307 153 82 -185 -26 107 82 -465 -307 -35 149 -13 -34 -235 193 -1298 104 -1298 -112 -20 -1298 165 -1298 39 -266 182 -76 -85 -465 65 -112 96 -207 115 -112 43 -20 132 -193 -57 -49 102 15 -75 -307 77 177 -1298 66 -35 82 -366 -233 -112 -135 132 -149 -135 46 83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRRTCGAACCSVKGAYCTYMVSRTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 81 E= 5.8e-354 0.308642 0.530864 0.123457 0.037037 0.000000 0.345679 0.407407 0.246914 0.049383 0.407407 0.543210 0.000000 0.197531 0.037037 0.728395 0.037037 0.037037 0.000000 0.962963 0.000000 0.555556 0.000000 0.432099 0.012346 0.456790 0.111111 0.234568 0.197531 0.000000 0.000000 0.000000 1.000000 0.000000 0.728395 0.000000 0.271605 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.987654 0.000000 0.000000 0.012346 0.000000 1.000000 0.000000 0.000000 0.037037 0.740741 0.037037 0.185185 0.037037 0.543210 0.333333 0.086420 0.259259 0.395062 0.333333 0.012346 0.037037 0.148148 0.530864 0.283951 0.246914 0.037037 0.716049 0.000000 0.641975 0.000000 0.086420 0.271605 0.000000 0.592593 0.000000 0.407407 0.049383 0.666667 0.111111 0.172840 0.012346 0.296296 0.086420 0.604938 0.074074 0.419753 0.086420 0.419753 0.271605 0.469136 0.049383 0.209877 0.222222 0.382716 0.209877 0.185185 0.037037 0.320988 0.641975 0.000000 0.493827 0.148148 0.333333 0.024691 0.061728 0.086420 0.074074 0.777778 0.111111 0.074074 0.259259 0.555556 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRRTCGAACCSVKGAYCTYMVSRTT MEME-1 regular expression -------------------------------------------------------------------------------- [CA][GCT][GC]GG[AG][AG]T[CT]GAACC[CG][CGA][GT][GA][AT][CT]C[TC][CT][CAT][CAG][GC][AG]T[TG] -------------------------------------------------------------------------------- Time 215.00 secs. ******************************************************************************** ******************************************************************************** MOTIF GSBBNBDTRGYBYAGTGGKTA MEME-2 width = 21 sites = 92 llr = 1245 E-value = 1.3e-177 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBBNBDTRGYBYAGTGGKTA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :111213:4:::1a2::::27 pos.-specific C :44433::::643::11:11: probability G 8433334:6a:31:8:6a4:1 matrix T 2133233a::435::92:563 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * * * * Relative 1.4 * * *** * Entropy 1.2 * **** *** * (19.5 bits) 1.0 * **** *** * 0.7 ** ***** ***** 0.5 *** ****** ****** * 0.2 **** **************** 0.0 --------------------- Multilevel GGCCCTGTGGCCTAGTGGTTA consensus CGTGCT A TGC A T GAT sequence TGTGA T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYBYAGTGGKTA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXVI:856730-857145 + 15 5.18e-10 AACAAGATTC GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrXII:656834-657211 - 14 5.18e-10 CAAGAAAATT GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrXI:517789-518173 + 57 5.18e-10 TATCTACTAT GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrXI:219654-220141 + 48 5.18e-10 ACAGTAAATA GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrXII:605128-605648 - 74 2.29e-09 GAAAAT GCTCGTGTAGCTCAGTGGTTA GAGCTTCGTG chrXV:110859-111208 - 30 3.34e-09 CAATTAACCC GGGCGGTTAGTGTAGTGGTTA TCATCCCACC chrXIV:95991-96534 - 80 3.34e-09 . GGGCGGTTAGTGTAGTGGTTA TCATCCCACC chrVII:779380-779922 + 15 3.34e-09 AGTTAACCCC GGGCGGTTAGTGTAGTGGTTA TCATCCCACC chrXV:300899-301390 + 3 4.03e-09 TC GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXIII:195937-196314 - 75 4.03e-09 CACAA GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXII:92335-92732 + 65 4.03e-09 AAGTTAATAA GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrVI:101098-101605 + 75 4.03e-09 ACAATAATTC GGGCGTGTGGTCTAGTGGTAT GATTC chrI:138965-139369 + 35 4.03e-09 CAATTAGTAC GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrVII:794252-794585 + 49 6.88e-09 CATAGATTGC GGGCACATGGCGCAGTTGGTA GCGCGCTTCC chrXIII:808029-808547 - 59 1.12e-08 AGAAGAAAAA GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrXII:448519-448856 - 64 1.12e-08 AAGAAGTTCC GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrIV:802560-803031 - 37 1.12e-08 ATGAATTGTC GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrIV:644983-645393 - 66 1.12e-08 CAGTTGTTAC GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrIV:520756-521173 + 58 1.12e-08 TCCATTTTAG GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrXVI:689320-689888 + 11 1.32e-08 GATTATTTTG GGCACTATGGCCGAGTGGTTA AGGCGACAGA chrXV:594233-594674 - 2 1.82e-08 TGATTGAAAC GCGCAAGTGGTTCAGTGGTTA G chrXIII:258984-259463 - 46 2.12e-08 AAGTTAGTAT GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrXII:167770-168241 - 50 2.12e-08 ATAGTCATAT GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrX:523821-524326 - 50 2.12e-08 AGAGATTAAA GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrIV:1305392-1305888 + 40 2.12e-08 TACAAATTAA GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrIV:1150693-1151158 - 46 2.45e-08 AAGTGTTTCA GTCCCAGTGGCCGAGTGGTTA AGGCGATGCC chrXVI:880085-880557 - 78 3.77e-08 AT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrXIV:602106-602597 + 11 3.77e-08 AGATAACAAT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrXIII:747719-748138 - 65 4.34e-08 CATATGACTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrXIII:131622-132115 - 58 4.34e-08 AAGAAATTTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrII:405525-406264 + 34 4.34e-08 ACAAATAGTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrXVI:860145-860687 + 13 4.98e-08 TAAATAACAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXVI:571952-572589 + 49 4.98e-08 ACAATACTTC GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXV:226463-226954 - 3 4.98e-08 AAGAAATTCA GCGCAAGTGGTTTAGTGGTAA AA chrX:396565-396950 - 69 4.98e-08 TCAAAAGTAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrVI:162044-162487 + 13 4.98e-08 AAGAAAACAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXII:592145-593021 - 66 7.41e-08 AACATACAAT GGGAGTTTGGCCGAGTGGTTT AAGGCGTCAG chrV:130844-131414 - 54 7.41e-08 ATAATTAAGA GGTTTTATAGTGTAGTGGTTA TCACTTTCGG chrII:350614-351058 + 41 7.41e-08 TCAATAAAAG GGTTTTATAGTGTAGTGGTTA TCACTTTCGG chrXVI:581852-582287 + 43 8.42e-08 CAACAAAAGA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrXI:307958-308458 - 39 8.42e-08 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrX:378180-378567 + 37 8.42e-08 TAAATTAATA GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrVII:823341-823722 + 1 8.42e-08 . GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrVII:122063-122416 + 80 8.42e-08 CAACGAATTA GCCTTGTTGGCGCAATCGGTA chrVI:226582-226975 - 12 8.42e-08 AGATTAAAAT GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrV:469194-469676 + 72 8.42e-08 AGAAATAATT GGTTTCGTGGTCTAGTCGGTT ATGGCATC chrV:435586-436001 - 61 8.42e-08 AACAATAAGA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrVII:1003968-1004409 + 78 9.55e-08 TCAAGGGTTT GCCTCCTTAGCTTAGTGGTAG AG chrVII:661532-661952 + 57 9.55e-08 GTAAAAATTT GCCTCCTTAGCTTAGTGGTAG AGCGTTGCAC chrXIV:104583-105125 + 1 1.22e-07 . GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrX:59012-59366 - 13 1.22e-07 TAAAATAGAA GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrIX:174663-175424 + 38 1.22e-07 ACAAGTACGA GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrXII:962826-963327 - 9 2.20e-07 TATTATCGAC GGAGGGTTGGCCGAGTGGTCT AAGGCGGC chrXI:83964-84473 + 40 2.20e-07 AAATTTGTAT GGAGGGTTGGCCGAGTGGTCT AATGCGGCAG chrX:424267-424707 - 58 2.20e-07 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCT AAGGCGGCAG chrIV:1256862-1257311 - 23 2.20e-07 GATCTTCTTA GCGAAAGTGGTTCAGTGGTTA GAATTCATGC chrXVI:769034-769490 - 70 5.68e-07 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTA GAGCGTTCGG chrXII:875066-875682 + 52 5.68e-07 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTA GAGCGTTCGG chrIV:359357-359812 + 43 5.68e-07 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTA GAGCGTTCGG chrXIV:374637-375154 + 24 6.26e-07 AGAAAAATAA GCGGACTTAGCTCAGTTGGGA GAGCGCCAGA chrXI:490746-491245 + 23 6.26e-07 ATAATTCTTG TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrV:492224-492559 - 63 6.26e-07 GAACATCCTA TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrXVI:622064-623131 - 64 7.58e-07 ATTCTGATAT GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrXI:457931-459148 + 68 7.58e-07 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCT AAGGCGCCTG chrVIII:358263-358784 - 76 7.58e-07 GTAA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrVIII:237749-238136 - 27 7.58e-07 CAAATAGTAA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrVII:205324-205791 + 14 7.58e-07 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCT AAGGCGCCTG chrXIV:632419-632825 + 27 9.13e-07 AATTTAAAGT GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrXI:74419-74918 + 6 9.13e-07 AATTA GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrIII:127577-127896 + 30 9.13e-07 AAGATAAAAT GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrXI:513140-513610 - 58 2.15e-06 CAAATAACGT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrX:374213-374820 - 9 2.15e-06 CTTTGTTTCT TCCGTGATAGTTTAATGGTCA GAATGGGC chrX:355188-355768 + 28 2.15e-06 CTTTGTTTCT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrX:204537-204962 + 36 2.15e-06 AACATAAAAA TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrVII:544407-544855 - 47 2.15e-06 AGATATTTCT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrXVI:338688-339178 - 16 2.51e-06 ATGATTTAGC AGCGCCGTGGCGCAGTGGAAG CGCGCAGGGC chrX:517639-518089 - 50 2.51e-06 ATAAAAGTTA AGCGCCGTGGCGCAGTGGAAG CGCGCAGGGC chrIII:149694-150166 + 40 2.51e-06 TGTAATGTTG AGCGCCGTGGCGCAGTGGAAG CGCGCAGGGC chrIV:1175594-1176084 + 40 3.14e-06 ACAAAACAAA GCTTCAGTAGCTCAGTAGGAA GAGCGTCAGT chrXI:302697-303220 + 10 4.18e-06 TTCCAAGAT GAAGCGGTGGCTCAATGGTAG AGCTTTCGAC chrVII:878535-879046 - 55 4.18e-06 ATTTCAAGAT GAAGCGGTGGCTCAATGGTAG AGCTTTCGAC chrVII:287076-287756 - 69 4.18e-06 ATTTCAAGAT GAAGCGGTGGCTCAATGGTAG AGCTTTCGAC chrIX:197372-197876 + 18 4.18e-06 GCTAATCAAA TCCGATGTAGTGTAACGGCTA TCACATCACG chrX:542758-543258 - 66 5.48e-06 CAATTAAATA CTCTCGGTAGCCAAGTTGGTT TAAGGCGCAA chrX:353980-354496 + 56 5.48e-06 TCATTTATCA CTCTCGGTAGCCAAGTTGGTT TAAGGCGCAA chrVI:210465-210900 - 55 5.48e-06 ACAAAAACGA CTCTCGGTAGCCAAGTTGGTT TAAGGCGCAA chrVI:167219-167714 + 21 5.48e-06 ACAAAAACGA CTCTCGGTAGCCAAGTTGGTT TAAGGCGCAA chrXIII:753307-755120 + 27 5.84e-06 CTTCCATTTT TGTGGCATAGTTTAGTAGGTA TTTACTCACT chrXVI:210058-210493 - 18 7.49e-06 CCAATTATTG TCCGATATAGTGTAACGGCTA TCACATCACG chrX:115754-116232 - 47 7.49e-06 TCGCTTATAA TCCGATATAGTGTAACGGCTA TCACATCACG chrIX:370223-370613 + 49 7.49e-06 TAGATTATAA TCCGATATAGTGTAACGGCTA TCACATCACG chrII:644939-645433 + 31 7.49e-06 TGAGTTATTA TCCGATATAGTGTAACGGCTA TCACATCACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYBYAGTGGKTA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:856730-857145 5.2e-10 14_[+2]_65 chrXII:656834-657211 5.2e-10 13_[-2]_66 chrXI:517789-518173 5.2e-10 56_[+2]_23 chrXI:219654-220141 5.2e-10 47_[+2]_32 chrXII:605128-605648 2.3e-09 73_[-2]_6 chrXV:110859-111208 3.3e-09 29_[-2]_50 chrXIV:95991-96534 3.3e-09 79_[-2] chrVII:779380-779922 3.3e-09 14_[+2]_65 chrXV:300899-301390 4e-09 2_[+2]_77 chrXIII:195937-196314 4e-09 74_[-2]_5 chrXII:92335-92732 4e-09 64_[+2]_15 chrVI:101098-101605 4e-09 74_[+2]_5 chrI:138965-139369 4e-09 34_[+2]_45 chrVII:794252-794585 6.9e-09 48_[+2]_31 chrXIII:808029-808547 1.1e-08 58_[-2]_21 chrXII:448519-448856 1.1e-08 63_[-2]_16 chrIV:802560-803031 1.1e-08 36_[-2]_43 chrIV:644983-645393 1.1e-08 65_[-2]_14 chrIV:520756-521173 1.1e-08 57_[+2]_22 chrXVI:689320-689888 1.3e-08 10_[+2]_69 chrXV:594233-594674 1.8e-08 1_[-2]_78 chrXIII:258984-259463 2.1e-08 45_[-2]_34 chrXII:167770-168241 2.1e-08 49_[-2]_30 chrX:523821-524326 2.1e-08 49_[-2]_30 chrIV:1305392-1305888 2.1e-08 39_[+2]_40 chrIV:1150693-1151158 2.5e-08 45_[-2]_34 chrXVI:880085-880557 3.8e-08 77_[-2]_2 chrXIV:602106-602597 3.8e-08 10_[+2]_69 chrXIII:747719-748138 4.3e-08 64_[-2]_15 chrXIII:131622-132115 4.3e-08 57_[-2]_22 chrII:405525-406264 4.3e-08 33_[+2]_46 chrXVI:860145-860687 5e-08 12_[+2]_67 chrXVI:571952-572589 5e-08 48_[+2]_31 chrXV:226463-226954 5e-08 2_[-2]_77 chrX:396565-396950 5e-08 68_[-2]_11 chrVI:162044-162487 5e-08 12_[+2]_67 chrXII:592145-593021 7.4e-08 65_[-2]_14 chrV:130844-131414 7.4e-08 53_[-2]_26 chrII:350614-351058 7.4e-08 40_[+2]_39 chrXVI:581852-582287 8.4e-08 42_[+2]_37 chrXI:307958-308458 8.4e-08 38_[-2]_41 chrX:378180-378567 8.4e-08 36_[+2]_43 chrVII:823341-823722 8.4e-08 [+2]_79 chrVII:122063-122416 8.4e-08 79_[+2] chrVI:226582-226975 8.4e-08 11_[-2]_68 chrV:469194-469676 8.4e-08 71_[+2]_8 chrV:435586-436001 8.4e-08 60_[-2]_19 chrVII:1003968-1004409 9.6e-08 77_[+2]_2 chrVII:661532-661952 9.6e-08 56_[+2]_23 chrXIV:104583-105125 1.2e-07 [+2]_79 chrX:59012-59366 1.2e-07 12_[-2]_67 chrIX:174663-175424 1.2e-07 37_[+2]_42 chrXII:962826-963327 2.2e-07 8_[-2]_71 chrXI:83964-84473 2.2e-07 39_[+2]_40 chrX:424267-424707 2.2e-07 57_[-2]_22 chrIV:1256862-1257311 2.2e-07 22_[-2]_57 chrXVI:769034-769490 5.7e-07 69_[-2]_10 chrXII:875066-875682 5.7e-07 51_[+2]_28 chrIV:359357-359812 5.7e-07 42_[+2]_37 chrXIV:374637-375154 6.3e-07 23_[+2]_56 chrXI:490746-491245 6.3e-07 22_[+2]_57 chrV:492224-492559 6.3e-07 62_[-2]_17 chrXVI:622064-623131 7.6e-07 63_[-2]_16 chrXI:457931-459148 7.6e-07 67_[+2]_12 chrVIII:358263-358784 7.6e-07 75_[-2]_4 chrVIII:237749-238136 7.6e-07 26_[-2]_53 chrVII:205324-205791 7.6e-07 13_[+2]_66 chrXIV:632419-632825 9.1e-07 26_[+2]_53 chrXI:74419-74918 9.1e-07 5_[+2]_74 chrIII:127577-127896 9.1e-07 29_[+2]_50 chrXI:513140-513610 2.1e-06 57_[-2]_22 chrX:374213-374820 2.1e-06 8_[-2]_71 chrX:355188-355768 2.1e-06 27_[+2]_52 chrX:204537-204962 2.1e-06 35_[+2]_44 chrVII:544407-544855 2.1e-06 46_[-2]_33 chrXVI:338688-339178 2.5e-06 15_[-2]_64 chrX:517639-518089 2.5e-06 49_[-2]_30 chrIII:149694-150166 2.5e-06 39_[+2]_40 chrIV:1175594-1176084 3.1e-06 39_[+2]_40 chrXI:302697-303220 4.2e-06 9_[+2]_70 chrVII:878535-879046 4.2e-06 54_[-2]_25 chrVII:287076-287756 4.2e-06 68_[-2]_11 chrIX:197372-197876 4.2e-06 17_[+2]_62 chrX:542758-543258 5.5e-06 65_[-2]_14 chrX:353980-354496 5.5e-06 55_[+2]_24 chrVI:210465-210900 5.5e-06 54_[-2]_25 chrVI:167219-167714 5.5e-06 20_[+2]_59 chrXIII:753307-755120 5.8e-06 26_[+2]_53 chrXVI:210058-210493 7.5e-06 17_[-2]_62 chrX:115754-116232 7.5e-06 46_[-2]_33 chrIX:370223-370613 7.5e-06 48_[+2]_31 chrII:644939-645433 7.5e-06 30_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYBYAGTGGKTA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBBNBDTRGYBYAGTGGKTA width=21 seqs=92 chrXVI:856730-857145 ( 15) GGGCGTGTGGCGTAGTCGGTA 1 chrXII:656834-657211 ( 14) GGGCGTGTGGCGTAGTCGGTA 1 chrXI:517789-518173 ( 57) GGGCGTGTGGCGTAGTCGGTA 1 chrXI:219654-220141 ( 48) GGGCGTGTGGCGTAGTCGGTA 1 chrXII:605128-605648 ( 74) GCTCGTGTAGCTCAGTGGTTA 1 chrXV:110859-111208 ( 30) GGGCGGTTAGTGTAGTGGTTA 1 chrXIV:95991-96534 ( 80) GGGCGGTTAGTGTAGTGGTTA 1 chrVII:779380-779922 ( 15) GGGCGGTTAGTGTAGTGGTTA 1 chrXV:300899-301390 ( 3) GGGCGTGTGGTCTAGTGGTAT 1 chrXIII:195937-196314 ( 75) GGGCGTGTGGTCTAGTGGTAT 1 chrXII:92335-92732 ( 65) GGGCGTGTGGTCTAGTGGTAT 1 chrVI:101098-101605 ( 75) GGGCGTGTGGTCTAGTGGTAT 1 chrI:138965-139369 ( 35) GGGCGTGTGGTCTAGTGGTAT 1 chrVII:794252-794585 ( 49) GGGCACATGGCGCAGTTGGTA 1 chrXIII:808029-808547 ( 59) GGTCCTATAGTGTAGTGGTTA 1 chrXII:448519-448856 ( 64) GGTCCTATAGTGTAGTGGTTA 1 chrIV:802560-803031 ( 37) GGTCCTATAGTGTAGTGGTTA 1 chrIV:644983-645393 ( 66) GGTCCTATAGTGTAGTGGTTA 1 chrIV:520756-521173 ( 58) GGTCCTATAGTGTAGTGGTTA 1 chrXVI:689320-689888 ( 11) GGCACTATGGCCGAGTGGTTA 1 chrXV:594233-594674 ( 2) GCGCAAGTGGTTCAGTGGTTA 1 chrXIII:258984-259463 ( 46) GGCAACTTGGCCGAGTGGTTA 1 chrXII:167770-168241 ( 50) GGCAACTTGGCCGAGTGGTTA 1 chrX:523821-524326 ( 50) GGCAACTTGGCCGAGTGGTTA 1 chrIV:1305392-1305888 ( 40) GGCAACTTGGCCGAGTGGTTA 1 chrIV:1150693-1151158 ( 46) GTCCCAGTGGCCGAGTGGTTA 1 chrXVI:880085-880557 ( 78) GGTCTCTTGGCCCAGTTGGTT 1 chrXIV:602106-602597 ( 11) GGTCTCTTGGCCCAGTTGGTT 1 chrXIII:747719-748138 ( 65) GCTCGCGTGGCGTAATGGCAA 1 chrXIII:131622-132115 ( 58) GCTCGCGTGGCGTAATGGCAA 1 chrII:405525-406264 ( 34) GCTCGCGTGGCGTAATGGCAA 1 chrXVI:860145-860687 ( 13) GCGCAAGTGGTTTAGTGGTAA 1 chrXVI:571952-572589 ( 49) GCGCAAGTGGTTTAGTGGTAA 1 chrXV:226463-226954 ( 3) GCGCAAGTGGTTTAGTGGTAA 1 chrX:396565-396950 ( 69) GCGCAAGTGGTTTAGTGGTAA 1 chrVI:162044-162487 ( 13) GCGCAAGTGGTTTAGTGGTAA 1 chrXII:592145-593021 ( 66) GGGAGTTTGGCCGAGTGGTTT 1 chrV:130844-131414 ( 54) GGTTTTATAGTGTAGTGGTTA 1 chrII:350614-351058 ( 41) GGTTTTATAGTGTAGTGGTTA 1 chrXVI:581852-582287 ( 43) GCCTTGTTGGCGCAATCGGTA 1 chrXI:307958-308458 ( 39) GGTTTCGTGGTCTAGTCGGTT 1 chrX:378180-378567 ( 37) GGTTTCGTGGTCTAGTCGGTT 1 chrVII:823341-823722 ( 1) GGTTTCGTGGTCTAGTCGGTT 1 chrVII:122063-122416 ( 80) GCCTTGTTGGCGCAATCGGTA 1 chrVI:226582-226975 ( 12) GCCTTGTTGGCGCAATCGGTA 1 chrV:469194-469676 ( 72) GGTTTCGTGGTCTAGTCGGTT 1 chrV:435586-436001 ( 61) GCCTTGTTGGCGCAATCGGTA 1 chrVII:1003968-1004409 ( 78) GCCTCCTTAGCTTAGTGGTAG 1 chrVII:661532-661952 ( 57) GCCTCCTTAGCTTAGTGGTAG 1 chrXIV:104583-105125 ( 1) GCTTCTATGGCCAAGTTGGTA 1 chrX:59012-59366 ( 13) GCTTCTATGGCCAAGTTGGTA 1 chrIX:174663-175424 ( 38) GCTTCTATGGCCAAGTTGGTA 1 chrXII:962826-963327 ( 9) GGAGGGTTGGCCGAGTGGTCT 1 chrXI:83964-84473 ( 40) GGAGGGTTGGCCGAGTGGTCT 1 chrX:424267-424707 ( 58) GGAGGGTTGGCCGAGTGGTCT 1 chrIV:1256862-1257311 ( 23) GCGAAAGTGGTTCAGTGGTTA 1 chrXVI:769034-769490 ( 70) TCCTTGTTAGCTCAGTTGGTA 1 chrXII:875066-875682 ( 52) TCCTTGTTAGCTCAGTTGGTA 1 chrIV:359357-359812 ( 43) TCCTTGTTAGCTCAGTTGGTA 1 chrXIV:374637-375154 ( 24) GCGGACTTAGCTCAGTTGGGA 1 chrXI:490746-491245 ( 23) TTCCTCGTGGCCCAATGGTCA 1 chrV:492224-492559 ( 63) TTCCTCGTGGCCCAATGGTCA 1 chrXVI:622064-623131 ( 64) GCGGATTTAGCTCAGTTGGGA 1 chrXI:457931-459148 ( 68) GGTTGTTTGGCCGAGCGGTCT 1 chrVIII:358263-358784 ( 76) GCGGATTTAGCTCAGTTGGGA 1 chrVIII:237749-238136 ( 27) GCGGATTTAGCTCAGTTGGGA 1 chrVII:205324-205791 ( 14) GGTTGTTTGGCCGAGCGGTCT 1 chrXIV:632419-632825 ( 27) GACTCCATGGCCAAGTTGGTT 1 chrXI:74419-74918 ( 6) GACTCCATGGCCAAGTTGGTT 1 chrIII:127577-127896 ( 30) GACTCCATGGCCAAGTTGGTT 1 chrXI:513140-513610 ( 58) TCCGTGATAGTTTAATGGTCA 1 chrX:374213-374820 ( 9) TCCGTGATAGTTTAATGGTCA 1 chrX:355188-355768 ( 28) TCCGTGATAGTTTAATGGTCA 1 chrX:204537-204962 ( 36) TCCGTGATAGTTTAATGGTCA 1 chrVII:544407-544855 ( 47) TCCGTGATAGTTTAATGGTCA 1 chrXVI:338688-339178 ( 16) AGCGCCGTGGCGCAGTGGAAG 1 chrX:517639-518089 ( 50) AGCGCCGTGGCGCAGTGGAAG 1 chrIII:149694-150166 ( 40) AGCGCCGTGGCGCAGTGGAAG 1 chrIV:1175594-1176084 ( 40) GCTTCAGTAGCTCAGTAGGAA 1 chrXI:302697-303220 ( 10) GAAGCGGTGGCTCAATGGTAG 1 chrVII:878535-879046 ( 55) GAAGCGGTGGCTCAATGGTAG 1 chrVII:287076-287756 ( 69) GAAGCGGTGGCTCAATGGTAG 1 chrIX:197372-197876 ( 18) TCCGATGTAGTGTAACGGCTA 1 chrX:542758-543258 ( 66) CTCTCGGTAGCCAAGTTGGTT 1 chrX:353980-354496 ( 56) CTCTCGGTAGCCAAGTTGGTT 1 chrVI:210465-210900 ( 55) CTCTCGGTAGCCAAGTTGGTT 1 chrVI:167219-167714 ( 21) CTCTCGGTAGCCAAGTTGGTT 1 chrXIII:753307-755120 ( 27) TGTGGCATAGTTTAGTAGGTA 1 chrXVI:210058-210493 ( 18) TCCGATATAGTGTAACGGCTA 1 chrX:115754-116232 ( 47) TCCGATATAGTGTAACGGCTA 1 chrIX:370223-370613 ( 49) TCCGATATAGTGTAACGGCTA 1 chrII:644939-645433 ( 31) TCCGATATAGTGTAACGGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYBYAGTGGKTA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 38080 bayes= 9.09309 E= 1.3e-177 -325 -212 199 -84 -226 113 124 -203 -226 109 53 -26 -203 93 47 -3 -45 58 41 -38 -167 58 53 16 -20 -1317 117 -3 -1317 -1317 -1317 168 33 -1317 169 -1317 -1317 -1317 241 -1317 -1317 167 -1317 37 -1317 101 79 -9 -152 58 -53 62 168 -1317 -1317 -1317 -38 -1317 201 -1317 -1317 -131 -1317 157 -384 -53 174 -52 -1317 -1317 241 -1317 -325 -112 97 71 -38 -53 -212 91 107 -1317 -112 -26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYBYAGTGGKTA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 92 E= 1.3e-177 0.032609 0.043478 0.750000 0.173913 0.065217 0.413043 0.445652 0.076087 0.065217 0.402174 0.271739 0.260870 0.076087 0.358696 0.260870 0.304348 0.228261 0.282609 0.250000 0.239130 0.097826 0.282609 0.271739 0.347826 0.271739 0.000000 0.423913 0.304348 0.000000 0.000000 0.000000 1.000000 0.391304 0.000000 0.608696 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.597826 0.000000 0.402174 0.000000 0.380435 0.326087 0.293478 0.108696 0.282609 0.130435 0.478261 1.000000 0.000000 0.000000 0.000000 0.239130 0.000000 0.760870 0.000000 0.000000 0.076087 0.000000 0.923913 0.021739 0.130435 0.630435 0.217391 0.000000 0.000000 1.000000 0.000000 0.032609 0.086957 0.369565 0.510870 0.239130 0.130435 0.043478 0.586957 0.652174 0.000000 0.086957 0.260870 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNBDTRGYBYAGTGGKTA MEME-2 regular expression -------------------------------------------------------------------------------- G[GC][CGT][CTG][CGTA][TCG][GTA]T[GA]G[CT][CGT][TC]A[GA]T[GT]G[TG][TA][AT] -------------------------------------------------------------------------------- Time 408.52 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAAYGVBCVMDVCSGGAHTCGAACC MEME-3 width = 30 sites = 24 llr = 518 E-value = 1.0e-069 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAAYGVBCVMDVCSGGAHTCGAACC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 7898a778::4133333123:74:::aa:: pos.-specific C ::::::::4:34626:353:::2:8:::a8 probability G 1::1:11:1943:4:43258a32::a:::: matrix T 1111:2315::311:312::::3a3::::3 bits 2.4 * * * 2.2 * * * 1.9 * * * * 1.7 * * * * **** Relative 1.4 * * ** ******* Entropy 1.2 * * * ** ******* (31.1 bits) 1.0 ** * * * *** ******* 0.7 ***** * * * * **** ******* 0.5 *********** * ** ***** ******* 0.2 ********************** ******* 0.0 ------------------------------ Multilevel AAAAAAAATGACCGCGGCGGGAATCGAACC consensus TT C GGAAATATCA GT T T sequence CT C AC A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVBCVMDVCSGGAHTCGAACC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIII:183794-183969 + 59 8.36e-14 GTGAATTAAA AAAAAATATGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrII:226969-227369 - 16 7.57e-13 TTACTGTCCA AAAAATAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrV:288159-288737 + 37 2.43e-12 CTCTAACAAT AAAAAAAACGACACCAGCAGGATTTGAACC AGCGCGGGCA chrI:166166-166564 - 3 4.45e-12 TGGATTAACA AAAAAATTTGGACGCAACCGGAATCGAACC GA chrX:617700-618297 - 50 5.01e-12 AAAAAATACA AAAAATAATGAGAGCTAAGGGATTCGAACC CTTGCATCCG chrIV:437532-438211 - 11 5.63e-12 TTGGGAATAT AAAAATGACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrXIII:320905-321333 + 70 7.09e-12 AGCCAAAAAA ATAAAAAATGGACGAGTCCGGAATCGAACC G chrXIV:569516-570161 + 71 7.94e-12 CAATGCAAAA AAAAAGAATGGTCTCTAGCGGGATCGAACC chrXV:464270-464867 - 12 8.89e-12 AAATAATTAA AAATAAAAGGGGCGAGCTGGGAATTGAACC CAGGGCCTCT chrX:531580-532252 - 11 8.89e-12 GAAAAAAAGA AAAGAAACTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrXV:980153-981452 - 14 9.94e-12 AACGAAGTTG CAAAAAAAGGGGCGAGCTGGGAATTGAACC CAGGGCCTCT chrVII:774161-774738 - 1 2.11e-11 ATTAAAAGTA AAAAAATTTGGACGAGTCCGGAATCGAACC chrXVI:689320-689888 - 71 9.19e-11 . AAATAATACGACACCAGCAGGATTTGAACC AGCGCGGGCA chrVI:137206-137715 + 68 1.72e-10 TGATTTTGAA TAAAAAAACGACCCCAGTGAGGGTTGAACT CAC chrIV:980740-981226 + 33 2.22e-10 GAAAATTTTT GGTAAAAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrXIV:631504-632135 + 69 2.42e-10 GATAAAAATA AATCAATGGGGGCGAGCCGGGACTCGAACC CG chrX:390791-391263 + 58 2.42e-10 GATATACGTA TAAAAATATGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrXII:628187-628757 - 54 2.63e-10 TTCGGAAGGC AAAAATAATGGTTGCTAAGAGATTCGAACT CTTGCATCTT chrIII:90862-91137 - 2 2.63e-10 TGTTGAGGAA AAAAATAATGGTTGCTAAGAGATTCGAACT C chrXIII:372178-372658 + 69 2.86e-10 GATAAAGTGC TAAAAAAATGATTTCGCCCAGGATCGAACT GG chrXI:162196-162731 + 66 4.64e-10 GACTGCTGGT GTAAAAAACACTCACGATGGGGGTCGAACC CATAA chrIII:150944-151570 + 69 4.64e-10 TTTTCCAAGA AAAAAGAAAGCCCTGTAGGGGGCTCGAACC CC chrVII:730964-731484 - 15 9.90e-10 CTCATTTCAA GCAAAAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrXIII:290475-291316 - 6 9.68e-09 ATTTCTTCAA AAAGAAGACTCCGATACGGGGAGTCGAACC CCGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVBCVMDVCSGGAHTCGAACC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:183794-183969 8.4e-14 58_[+3]_12 chrII:226969-227369 7.6e-13 15_[-3]_55 chrV:288159-288737 2.4e-12 36_[+3]_34 chrI:166166-166564 4.5e-12 2_[-3]_68 chrX:617700-618297 5e-12 49_[-3]_21 chrIV:437532-438211 5.6e-12 10_[-3]_60 chrXIII:320905-321333 7.1e-12 69_[+3]_1 chrXIV:569516-570161 7.9e-12 70_[+3] chrXV:464270-464867 8.9e-12 11_[-3]_59 chrX:531580-532252 8.9e-12 10_[-3]_60 chrXV:980153-981452 9.9e-12 13_[-3]_57 chrVII:774161-774738 2.1e-11 [-3]_70 chrXVI:689320-689888 9.2e-11 70_[-3] chrVI:137206-137715 1.7e-10 67_[+3]_3 chrIV:980740-981226 2.2e-10 32_[+3]_38 chrXIV:631504-632135 2.4e-10 68_[+3]_2 chrX:390791-391263 2.4e-10 57_[+3]_13 chrXII:628187-628757 2.6e-10 53_[-3]_17 chrIII:90862-91137 2.6e-10 1_[-3]_69 chrXIII:372178-372658 2.9e-10 68_[+3]_2 chrXI:162196-162731 4.6e-10 65_[+3]_5 chrIII:150944-151570 4.6e-10 68_[+3]_2 chrVII:730964-731484 9.9e-10 14_[-3]_56 chrXIII:290475-291316 9.7e-09 5_[-3]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVBCVMDVCSGGAHTCGAACC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAAYGVBCVMDVCSGGAHTCGAACC width=30 seqs=24 chrXIII:183794-183969 ( 59) AAAAAATATGCGCAAGCCCGGAATCGAACC 1 chrII:226969-227369 ( 16) AAAAATAACGACAACTGCAGGACTCGAACC 1 chrV:288159-288737 ( 37) AAAAAAAACGACACCAGCAGGATTTGAACC 1 chrI:166166-166564 ( 3) AAAAAATTTGGACGCAACCGGAATCGAACC 1 chrX:617700-618297 ( 50) AAAAATAATGAGAGCTAAGGGATTCGAACC 1 chrIV:437532-438211 ( 11) AAAAATGACGACAACTGCAGGACTCGAACC 1 chrXIII:320905-321333 ( 70) ATAAAAAATGGACGAGTCCGGAATCGAACC 1 chrXIV:569516-570161 ( 71) AAAAAGAATGGTCTCTAGCGGGATCGAACC 1 chrXV:464270-464867 ( 12) AAATAAAAGGGGCGAGCTGGGAATTGAACC 1 chrX:531580-532252 ( 11) AAAGAAACTGCGCAAGCCCGGAATCGAACC 1 chrXV:980153-981452 ( 14) CAAAAAAAGGGGCGAGCTGGGAATTGAACC 1 chrVII:774161-774738 ( 1) AAAAAATTTGGACGAGTCCGGAATCGAACC 1 chrXVI:689320-689888 ( 71) AAATAATACGACACCAGCAGGATTTGAACC 1 chrVI:137206-137715 ( 68) TAAAAAAACGACCCCAGTGAGGGTTGAACT 1 chrIV:980740-981226 ( 33) GGTAAAAACGACAACTGCAGGACTCGAACC 1 chrXIV:631504-632135 ( 69) AATCAATGGGGGCGAGCCGGGACTCGAACC 1 chrX:390791-391263 ( 58) TAAAAATATGCTCCAGGGGAGGTTCGAACT 1 chrXII:628187-628757 ( 54) AAAAATAATGGTTGCTAAGAGATTCGAACT 1 chrIII:90862-91137 ( 2) AAAAATAATGGTTGCTAAGAGATTCGAACT 1 chrXIII:372178-372658 ( 69) TAAAAAAATGATTTCGCCCAGGATCGAACT 1 chrXI:162196-162731 ( 66) GTAAAAAACACTCACGATGGGGGTCGAACC 1 chrIII:150944-151570 ( 69) AAAAAGAAAGCCCTGTAGGGGGCTCGAACC 1 chrVII:730964-731484 ( 15) GCAAAAAACGACCCCAGTGAGGGTTGAACT 1 chrXIII:290475-291316 ( 6) AAAGAAGACTCCGATACGGGGAGTCGAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVBCVMDVCSGGAHTCGAACC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 33796 bayes= 9.23482 E= 1.0e-069 118 -218 -59 -132 142 -218 -218 -190 156 -1123 -1123 -190 135 -218 -118 -190 168 -1123 -1123 -1123 118 -1123 -118 -58 110 -1123 -118 -32 142 -218 -218 -190 -290 99 -59 56 -290 -1123 228 -290 27 41 99 -1123 -132 99 41 -32 -32 163 -218 -132 -9 14 99 -132 10 163 -218 -290 -32 -1123 114 10 -9 63 82 -190 -132 141 -18 -58 -58 63 141 -1123 -32 -1123 199 -1123 -1123 -1123 241 -1123 118 -1123 63 -1123 27 14 -18 -32 -1123 -1123 -1123 168 -1123 199 -1123 -32 -1123 -1123 241 -1123 168 -1123 -1123 -1123 168 -1123 -1123 -1123 -1123 241 -1123 -1123 -1123 199 -1123 -32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVBCVMDVCSGGAHTCGAACC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 24 E= 1.0e-069 0.708333 0.041667 0.125000 0.125000 0.833333 0.041667 0.041667 0.083333 0.916667 0.000000 0.000000 0.083333 0.791667 0.041667 0.083333 0.083333 1.000000 0.000000 0.000000 0.000000 0.708333 0.000000 0.083333 0.208333 0.666667 0.000000 0.083333 0.250000 0.833333 0.041667 0.041667 0.083333 0.041667 0.375000 0.125000 0.458333 0.041667 0.000000 0.916667 0.041667 0.375000 0.250000 0.375000 0.000000 0.125000 0.375000 0.250000 0.250000 0.250000 0.583333 0.041667 0.125000 0.291667 0.208333 0.375000 0.125000 0.333333 0.583333 0.041667 0.041667 0.250000 0.000000 0.416667 0.333333 0.291667 0.291667 0.333333 0.083333 0.125000 0.500000 0.166667 0.208333 0.208333 0.291667 0.500000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.708333 0.000000 0.291667 0.000000 0.375000 0.208333 0.166667 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVBCVMDVCSGGAHTCGAACC MEME-3 regular expression -------------------------------------------------------------------------------- AAAAA[AT][AT]A[TC]G[AGC][CGT][CA][GAC][CA][GTA][GAC][CT][GCA][GA]G[AG][ATC]T[CT]GAAC[CT] -------------------------------------------------------------------------------- Time 593.81 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:81858-82383 2.60e-01 100 chrI:138965-139369 3.24e-07 34_[+2(4.03e-09)]_45 chrI:166166-166564 1.88e-08 2_[-3(4.45e-12)]_68 chrI:180919-181488 5.98e-01 100 chrI:182283-183182 1.47e-01 100 chrII:9366-10011 1.14e-09 6_[-3(3.57e-09)]_64 chrII:35795-36849 2.18e-01 100 chrII:44938-45394 2.33e-01 100 chrII:45583-46376 9.15e-01 100 chrII:60783-61498 9.85e-01 100 chrII:88942-90450 6.63e-01 100 chrII:165075-165447 3.63e-01 100 chrII:167864-169636 4.04e-01 100 chrII:181276-181699 1.00e+00 100 chrII:197258-198279 9.91e-01 100 chrII:199419-200614 8.67e-01 100 chrII:226969-227369 6.40e-10 15_[-3(7.57e-13)]_55 chrII:266191-266697 5.47e-13 19_[-1(1.97e-10)]_52 chrII:326541-327078 6.63e-12 40_[+1(2.44e-10)]_31 chrII:331778-332787 4.71e-01 100 chrII:347395-347937 2.82e-07 44_[+1(9.24e-08)]_27 chrII:350614-351058 4.29e-06 40_[+2(7.41e-08)]_39 chrII:405525-406264 3.17e-12 33_[+2(4.34e-08)]_14_[-1(4.40e-11)]_\ 3 chrII:415483-415885 3.38e-01 100 chrII:476818-477750 4.78e-01 100 chrII:504530-504750 2.59e-01 100 chrII:592278-593427 7.24e-01 100 chrII:603740-607108 7.74e-02 100 chrII:642858-643434 1.37e-01 49_[+3(9.70e-05)]_21 chrII:644939-645433 1.04e-11 30_[+2(7.49e-06)]_14_[-1(1.53e-13)]_\ 6 chrIII:114-1047 4.49e-02 21_[-2(1.91e-05)]_58 chrIII:11088-11407 8.00e-01 100 chrIII:30549-31002 2.34e-01 100 chrIII:58735-59010 6.63e-01 100 chrIII:81767-83491 1.23e-01 100 chrIII:90862-91137 2.41e-06 1_[-3(2.63e-10)]_69 chrIII:123161-123821 3.96e-01 100 chrIII:127577-127896 8.32e-09 29_[+2(9.13e-07)]_16_[-1(5.40e-09)]_\ 5 chrIII:142599-143015 7.85e-01 100 chrIII:149694-150166 1.02e-03 39_[+2(2.51e-06)]_40 chrIII:150944-151570 3.46e-06 68_[+3(4.64e-10)]_2 chrIII:163435-163895 6.34e-01 100 chrIII:168054-168546 3.14e-13 58_[+1(1.40e-11)]_13 chrIII:178264-178731 9.18e-01 100 chrIII:227715-228272 3.20e-02 100 chrIII:295300-296033 7.10e-01 100 chrIV:31-348 2.45e-01 100 chrIV:83425-83824 8.94e-13 7_[-1(2.99e-12)]_64 chrIV:117166-117688 6.90e-01 100 chrIV:129404-130993 4.96e-01 100 chrIV:216741-218074 1.54e-01 100 chrIV:221757-222407 3.10e-01 100 chrIV:229108-230435 7.20e-01 100 chrIV:307953-309454 3.82e-01 100 chrIV:321439-321972 3.28e-01 100 chrIV:322186-323531 7.69e-01 100 chrIV:341136-341648 7.88e-01 100 chrIV:358010-358480 9.69e-01 100 chrIV:359357-359812 5.47e-04 42_[+2(5.68e-07)]_37 chrIV:409191-409672 9.57e-02 100 chrIV:410145-410770 2.82e-12 22_[-3(2.04e-10)]_48 chrIV:411229-411672 2.11e-01 100 chrIV:434106-435048 4.68e-01 100 chrIV:437532-438211 2.76e-08 10_[-3(5.63e-12)]_60 chrIV:488436-489133 8.54e-12 70_[+1(2.44e-10)]_1 chrIV:490701-491277 9.97e-01 100 chrIV:519648-519955 3.70e-07 49_[+1(9.82e-08)]_22 chrIV:520756-521173 2.61e-06 57_[+2(1.12e-08)]_22 chrIV:538867-539199 5.80e-01 100 chrIV:568630-569782 5.45e-01 100 chrIV:578785-580730 5.45e-02 4_[+2(6.02e-05)]_75 chrIV:619374-620322 4.02e-02 100 chrIV:644983-645393 3.68e-18 22_[+1(1.40e-11)]_14_[-2(1.12e-08)]_\ 14 chrIV:667721-668218 4.12e-01 100 chrIV:758450-759585 7.08e-01 100 chrIV:802560-803031 6.54e-07 36_[-2(1.12e-08)]_43 chrIV:835746-836323 2.04e-01 100 chrIV:884243-885329 7.57e-01 100 chrIV:946135-946631 7.12e-07 30_[-1(1.46e-09)]_41 chrIV:980740-981226 1.20e-07 32_[+3(2.22e-10)]_38 chrIV:992675-993487 6.52e-01 100 chrIV:1013397-1013949 6.00e-01 100 chrIV:1016945-1017493 6.76e-14 45_[+1(1.53e-13)]_26 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chrXIV:569516-570161 8.11e-08 70_[+3(7.94e-12)] chrXIV:602106-602597 7.08e-22 10_[+2(3.77e-08)]_16_[-1(4.43e-13)]_\ 24 chrXIV:631504-632135 4.07e-06 68_[+3(2.42e-10)]_2 chrXIV:632419-632825 8.32e-09 26_[+2(9.13e-07)]_16_[-1(5.40e-09)]_\ 8 chrXIV:725637-726344 7.58e-01 100 chrXIV:783543-784318 2.26e-02 100 chrXV:79702-80165 8.87e-01 100 chrXV:92836-94815 7.23e-01 100 chrXV:110859-111208 5.78e-05 29_[-2(3.34e-09)]_50 chrXV:113585-113927 6.65e-02 100 chrXV:161069-161503 8.55e-01 100 chrXV:167955-169563 8.91e-01 100 chrXV:216274-216725 6.57e-01 100 chrXV:226463-226954 3.83e-04 2_[-2(4.98e-08)]_77 chrXV:227838-228580 5.61e-01 100 chrXV:253783-254152 8.41e-01 100 chrXV:274462-274996 1.06e-02 100 chrXV:281709-282385 1.39e-01 100 chrXV:287540-288432 8.78e-03 27_[-3(1.57e-05)]_43 chrXV:300899-301390 8.21e-14 2_[+2(4.03e-09)]_44_[-1(1.41e-10)]_\ 4 chrXV:340135-340740 8.81e-01 100 chrXV:353689-354307 9.97e-01 100 chrXV:438451-438998 3.08e-12 27_[-1(1.26e-10)]_44 chrXV:444665-446140 5.60e-01 100 chrXV:464270-464867 4.66e-09 11_[-3(8.89e-12)]_59 chrXV:487429-487893 5.52e-01 100 chrXV:505052-505524 5.62e-01 100 chrXV:514340-514712 8.01e-02 100 chrXV:571496-572151 9.68e-01 100 chrXV:594233-594674 2.27e-04 1_[-2(1.82e-08)]_78 chrXV:639188-639422 1.33e-01 100 chrXV:663411-664476 2.36e-01 100 chrXV:678658-679245 5.80e-01 100 chrXV:710117-710928 4.63e-01 100 chrXV:779307-779503 3.58e-01 100 chrXV:779660-780942 8.38e-01 100 chrXV:853427-854781 3.26e-01 100 chrXV:866367-867635 8.96e-01 100 chrXV:897040-898225 9.54e-01 100 chrXV:925185-925437 1.95e-01 100 chrXV:961179-963131 9.00e-01 100 chrXV:968127-968457 6.79e-01 100 chrXV:976269-976688 1.49e-11 43_[-3(5.42e-10)]_27 chrXV:978777-979181 4.28e-01 100 chrXV:980153-981452 5.17e-09 13_[-3(9.94e-12)]_57 chrXV:1004100-1004942 4.01e-01 100 chrXV:1025678-1026051 3.97e-01 100 chrXV:1027944-1029106 5.12e-01 100 chrXV:1029303-1029479 4.50e-01 100 chrXVI:55826-56433 5.10e-02 100 chrXVI:75493-77285 7.47e-01 100 chrXVI:134844-135827 3.76e-01 100 chrXVI:188575-189242 1.31e-01 100 chrXVI:210058-210493 1.07e-02 17_[-2(7.49e-06)]_62 chrXVI:243785-244225 6.06e-01 100 chrXVI:281555-282978 9.46e-01 100 chrXVI:302632-304786 6.49e-01 100 chrXVI:338688-339178 3.00e-03 15_[-2(2.51e-06)]_64 chrXVI:378620-379027 3.58e-01 100 chrXVI:406169-406611 9.10e-01 100 chrXVI:433301-434074 9.91e-03 42_[+3(6.88e-05)]_28 chrXVI:435627-436195 1.27e-12 23_[+3(6.83e-10)]_18_[-2(2.88e-05)]_\ 8 chrXVI:520093-520552 8.62e-01 100 chrXVI:559851-560299 4.33e-01 100 chrXVI:571952-572589 4.15e-04 48_[+2(4.98e-08)]_31 chrXVI:579943-580935 7.44e-01 100 chrXVI:581852-582287 6.12e-04 42_[+2(8.42e-08)]_37 chrXVI:622064-623131 1.09e-09 [+1(9.12e-10)]_34_[-2(7.58e-07)]_16 chrXVI:689320-689888 1.16e-12 10_[+2(1.32e-08)]_39_[-3(9.19e-11)] chrXVI:699906-700639 8.54e-01 100 chrXVI:731622-732542 7.00e-01 100 chrXVI:744057-744656 1.49e-10 27_[-3(4.05e-09)]_43 chrXVI:769034-769490 1.74e-12 2_[+1(1.26e-10)]_38_[-2(5.68e-07)]_\ 10 chrXVI:775640-776112 5.34e-01 100 chrXVI:794442-795976 6.16e-01 100 chrXVI:810573-811256 5.80e-01 100 chrXVI:819151-820232 8.70e-01 100 chrXVI:856730-857145 5.38e-19 14_[+2(5.18e-10)]_30_[-3(9.19e-11)]_\ 5 chrXVI:860145-860687 3.57e-20 12_[+2(4.98e-08)]_13_[-1(2.99e-12)]_\ 25 chrXVI:880085-880557 3.61e-19 32_[+1(4.43e-13)]_16_[-2(3.77e-08)]_\ 2 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************