# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MGA2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MGA2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MGA2/seqs-shuffled
#   positives: 476 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MGA2/seqs-centered (Sun Jan 19 02:38:36 PST 2020)
#   negatives: 476 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MGA2/seqs-shuffled (Sun Jan 19 02:38:36 PST 2020)
#        host: kali.stanford.edu
#        when: Sun Jan 19 02:48:35 PST 2020

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.305 C 0.201 G 0.195 T 0.300


MOTIF GRTTCGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GRTTCGA    TCGAAYC         81          3   1.6e-022   4.6e-018
#          GGTTCGA    TCGAACC         71          3   2.7e-019   7.7e-015
#          GATTCGA    TCGAATC         18          0   3.2e-006   9.4e-002

letter-probability matrix: alength= 4 w= 7 nsites= 81 E= 4.6e-018
0.000000 0.000000 1.000000 0.000000
0.172840 0.000000 0.827160 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAAWAW DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAWAW   WTWTTTTT        117         51   1.2e-008   3.4e-004
#         AAAAAAAT   ATTTTTTT         71         27   1.6e-006   4.7e-002
#         AAAAATAA   TTATTTTT         40         12   4.1e-005   1.2e+000
#         AAAAAAAA   TTTTTTTT         51         25   1.3e-003   3.7e+001
#         AAAAATAT   ATATTTTT         22          7   3.6e-003   1.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 137 E= 3.4e-004
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.613139 0.000000 0.000000 0.386861
1.000000 0.000000 0.000000 0.000000
0.532847 0.000000 0.000000 0.467153


MOTIF GTGGTYTA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTGGTYTA   TARACCAC         22          0   1.9e-007   5.3e-003
#         GTGGTCTA   TAGACCAC         14          0   5.5e-005   1.6e+000
#         GTGGTTTA   TAAACCAC          8          0   3.8e-003   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 5.3e-003
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.636364 0.000000 0.363636
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CGCSCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CGCSCA     TGSGCG         45         10   5.3e-007   1.5e-002
#           CGCCCA     TGGGCG         24          5   2.3e-004   6.4e+000
#           CGCGCA     TGCGCG         22          6   1.6e-003   4.6e+001

letter-probability matrix: alength= 4 w= 6 nsites= 47 E= 1.5e-002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.531915 0.468085 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 16.08 seconds