Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.064713 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.064778 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.077144 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.025397 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.071456 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background Finished invoke: name: bg status: 0 time: 0.024903 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 980.990307 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 47.229045 Invoking: centrimo -seqlen 575 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.162651 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.52128 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background -primary YGMYCHMDCSSRGRATCGAACCCVSGACCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.492293 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background -primary GCCVARTKGGTARVGCGYMNGACTNNTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.368806 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background -primary GTGGYCDAGTKGKWWAAKGS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.351023 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background -primary AAAAAKAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.369399 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background -primary CCAASA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.352713 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background -primary ACGRTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.321143 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background -primary CTTAAYCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.2452 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background -primary ATAKTGTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.228409 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background --motif YGMYCHMDCSSRGRATCGAACCCVSGACCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa Finished invoke: name: fimo1 status: 0 time: 0.43215 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background --motif GCCVARTKGGTARVGCGYMNGACTNNTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa Finished invoke: name: fimo2 status: 0 time: 0.429632 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background --motif GTGGYCDAGTKGKWWAAKGS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa Finished invoke: name: fimo3 status: 0 time: 0.41214 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background --motif AAAAAKAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa Finished invoke: name: fimo4 status: 0 time: 0.325549 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background --motif CCAASA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa Finished invoke: name: fimo5 status: 0 time: 0.287123 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background --motif ACGRTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa Finished invoke: name: fimo6 status: 0 time: 0.297114 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background --motif CTTAAYCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa Finished invoke: name: fimo7 status: 0 time: 0.317373 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background --motif ATAKTGTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/AWRI1631--MCM1.fa Finished invoke: name: fimo8 status: 0 time: 0.341132 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/summary.tsv Finished invoke: name: summary status: 0 time: 0.184719 Done