******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:301103-301683 1.0000 100 chrVIII:103767-105522 1.0000 100 chrXIV:585395-586569 1.0000 100 chrVII:56417-58879 1.0000 100 chrXI:109188-110856 1.0000 100 chrI:151347-151830 1.0000 100 chrIV:1301536-1302608 1.0000 100 chrXVI:821611-822286 1.0000 100 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1.0000 100 chrVII:610464-613625 1.0000 100 chrXII:796971-797629 1.0000 100 chrXV:925178-925420 1.0000 100 chrIII:114348-114971 1.0000 100 chrVI:210455-210977 1.0000 100 chrIV:568683-569301 1.0000 100 chrXIII:220036-221228 1.0000 100 chrXV:881770-884166 1.0000 100 chrV:122106-123028 1.0000 100 chrVII:110328-110774 1.0000 100 chrXIV:675188-676470 1.0000 100 chrIV:465191-467210 1.0000 100 chrXV:853965-854814 1.0000 100 chrIV:1401363-1403474 1.0000 100 chrXI:163342-164549 1.0000 100 chrIX:68661-70007 1.0000 100 chrII:679769-680094 1.0000 100 chrVII:738915-739590 1.0000 100 chrXIV:61562-64533 1.0000 100 chrV:249782-250540 1.0000 100 chrXII:36927-37439 1.0000 100 chrIV:519664-520189 1.0000 100 chrXV:234192-234767 1.0000 100 chrXIII:572647-573163 1.0000 100 chrVII:115340-115725 1.0000 100 chrII:680267-682440 1.0000 100 chrXVI:559900-560266 1.0000 100 chrII:226987-227352 1.0000 100 chrXV:216329-216653 1.0000 100 chrXIV:86875-89965 1.0000 100 chrVII:779383-779921 1.0000 100 chrXII:201593-202727 1.0000 100 chrX:606050-606150 1.0000 100 chrIII:29036-29388 1.0000 100 chrIV:1256812-1257301 1.0000 100 chrIV:220950-222309 1.0000 100 chrV:192320-192623 1.0000 100 chrIV:83446-83859 1.0000 100 chrXIII:221517-223886 1.0000 100 chrVII:700357-701280 1.0000 100 chrVII:364103-364464 1.0000 100 chrXIII:267664-268336 1.0000 100 chrXI:158305-159742 1.0000 100 chrXIV:102597-103231 1.0000 100 chrIV:980754-981167 1.0000 100 chrIV:1305359-1305870 1.0000 100 chrXI:551631-552727 1.0000 100 chrXII:498554-499853 1.0000 100 chrV:151778-152550 1.0000 100 chrXII:534189-535736 1.0000 100 chrXII:734592-734982 1.0000 100 chrI:166175-166611 1.0000 100 chrIV:229807-230844 1.0000 100 chrIV:748685-751401 1.0000 100 chrXV:435537-437078 1.0000 100 chrXII:459598-460750 1.0000 100 chrVIII:145831-146500 1.0000 100 chrXII:47452-49169 1.0000 100 chrIX:316004-318488 1.0000 100 chrII:168368-169628 1.0000 100 chrIV:1384210-1385329 1.0000 100 chrX:194896-194996 1.0000 100 chrV:288184-288749 1.0000 100 chrVII:647955-648506 1.0000 100 chrIV:1201556-1202002 1.0000 100 chrI:138978-139378 1.0000 100 chrV:363625-364450 1.0000 100 chrXVI:370979-373286 1.0000 100 chrVI:90530-91079 1.0000 100 chrXII:440420-441660 1.0000 100 chrXVI:377882-378458 1.0000 100 chrXIV:568061-568623 1.0000 100 chrVIII:488331-488619 1.0000 100 chrVII:857090-857811 1.0000 100 chrVI:101185-101563 1.0000 100 chrVII:650972-651365 1.0000 100 chrX:569663-569763 1.0000 100 chrXV:287796-288448 1.0000 100 chrVII:319223-320136 1.0000 100 chrII:644951-645421 1.0000 100 chrVIII:34389-36133 1.0000 100 chrVII:561442-561710 1.0000 100 chrXIV:302590-303786 1.0000 100 chrXV:978746-979229 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--MCM1/background): A 0.308 C 0.192 G 0.192 T 0.308 ******************************************************************************** ******************************************************************************** MOTIF YGMYCHMDCSSRGRATCGAACCCVSGACCT MEME-1 width = 30 sites = 83 llr = 1600 E-value = 2.7e-325 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGMYCHMDCSSRGRATCGAACCCVSGACCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:3:23332:13:55:::aa::12:26:1: pos.-specific C 4:55545:553:::2:7:::a7533:1663 probability G :71221243356a52::a::::34581122 matrix T 52132213:2::::2a3::::31:2:2326 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * * ** * * Relative 1.4 * ****** * Entropy 1.2 * ****** * (27.8 bits) 1.0 * *** ******* * * 0.7 * ****** ******** ** * 0.5 **** ******* *********** *** 0.2 ************** *************** 0.0 ------------------------------ Multilevel TGCCCCCGCCGGGAATCGAACCCGGGACCT consensus CTAT AATGGCA G T TGCC TGC sequence T AAT AT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGMYCHMDCSSRGRATCGAACCCVSGACCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrIV:1256812-1257301 + 2 1.30e-13 A TGCGGAAGCCGGGAATCGAACCCGGGCCCC ATGCTTGGGA chrVII:845296-846147 - 19 3.94e-13 GAAAAAACAT TGCGCAAGCCCGGAATCGAACCGGGGGCCC AACGATGGCA chrXV:226417-226892 + 7 3.94e-13 AAAATT TGCGCAAGCCCGGAATCGAACCGGGGGCCC AACGATGGCA chrVI:180681-181267 + 50 3.94e-13 AAAAAAGGAC TGCGCAAGCCCGGAATCGAACCGGGGGCCC AACGATGGCA chrXV:281950-282423 - 69 3.94e-13 AA TGCGCAAGCCCGGAATCGAACCGGGGGCCC AACGATGGCA chrXVI:572042-572643 - 18 3.94e-13 GGGGAAAAAT TGCGCAAGCCCGGAATCGAACCGGGGGCCC AACGATGGCA chrIV:1075268-1075737 + 20 1.55e-12 AAAAAACAAA TGTTCCAACCGAGGATCGAACTCGGGACCT TTGCCGTGTG chrVIII:475490-475893 + 65 1.55e-12 GATGTTAAAA TGTTCCAACCGAGGATCGAACTCGGGACCT TTGCCG chrIII:123324-123828 + 51 2.53e-12 AAAACAATGT GGGGCGAGCCGGGACTCGAACCCGGGACCT CCCGCACCCT chrIV:488409-489169 + 58 6.40e-12 AAAAAGATTC TGATCCAACCGAGGTTCGAACTCGGGATCT TCGCCGTGTA chrII:326493-327060 + 66 6.40e-12 ATAAAGAGTT TGATCCAACCGAGGTTCGAACTCGGGATCT TCGCC chrXI:307896-308410 + 41 2.03e-11 AAAAAAAAAT TGATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrV:438501-438998 - 45 2.03e-11 AAAAAAAAAT TGATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrX:378210-378310 - 70 2.03e-11 T TGATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXIII:420308-420872 + 48 2.03e-11 GAGATAAAAA TGATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrVII:823356-823725 - 36 2.03e-11 CTTCAAAAAA TGATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrVII:412079-412573 + 18 2.03e-11 AAATAAAACT TGATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXIII:586399-586894 + 40 2.03e-11 TTCAAAAAAA TGATTTCGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrIV:1016950-1017508 + 28 3.07e-11 AAAAAAGAAA CTCCGAAGCGGGGAGTCGAACCCCGGTCTC CACGGTGAGA chrXIII:572647-573163 + 28 5.95e-11 AAAAAAAATG TGCTCCAGGGGAGGTTCGAACTCTCGACCT TCAGATTATG chrX:422663-422763 - 37 5.95e-11 AAAAAAAATG TGCTCCAGGGGAGGTTCGAACTCTCGACCT TCAGATTATG chrX:390784-390884 + 30 5.95e-11 TATAAAAATA TGCTCCAGGGGAGGTTCGAACTCTCGACCT TCAGATTATG chrV:443019-443377 + 54 1.12e-10 AAAAAAAATA TGGTCTCTAGCGGGATCGAACCGCTGATCC CCGCGTTATT chrXIV:569660-570165 + 5 1.12e-10 AGAA TGGTCTCTAGCGGGATCGAACCGCTGATCC CCGCGTTATT chrII:197255-197843 - 39 1.12e-10 TGCAAAAAAA TGGTCTCTAGCGGGATCGAACCGCTGATCC CCGCGTTATT chrXII:1051907-1052200 + 68 1.12e-10 AAAAAAATAA TGGTCTCTAGCGGGATCGAACCGCTGATCC CCG chrVIII:466799-467316 - 25 1.26e-10 ACCGGTATAA TGCCACCTGCCAGAATTGAACTAGCGACCT TTGCATTACA chrVII:779383-779921 - 56 1.43e-10 AAAGTAATCT TGAGCGGTACGAGAATCGAACCCGTGTCCC CACCTTGGAA chrXIV:96008-96553 + 11 1.43e-10 TCAAAAAATT TGAGCGGTACGAGAATCGAACCCGTGTCCC CACCTTGGAA chrIV:884257-884656 - 58 1.82e-10 AAAGAGAAAG TGCTCGAGGTGGGGTTTGAACCCACGACGG TCGCGTTGCT chrIV:1201556-1202002 - 64 2.05e-10 TGTTATT AGCCCTGTAGGGGGCTCGAACCCCTAACCT TATGATTAAG chrXIII:480403-480817 + 61 2.05e-10 CAAAAAAAGA AGCCCTGTAGGGGGCTCGAACCCCTAACCT TATGATTAAG chrIX:300038-300508 + 5 2.05e-10 AGAT AGCCCTGTAGGGGGCTCGAACCCCTAACCT TATGATTAAG chrIII:127594-127925 - 51 2.30e-10 GAAAAATTAA CGACCCCAGTGAGGGTTGAACTCACGATCT TGCGATTAAC chrXV:438416-439091 - 6 2.30e-10 AAATAAAGAA CTCCTCATAGGGGGCTCGAACCCCTGACAT TTCGG chrIV:359350-359902 - 67 2.30e-10 AGAA CTCCTCATAGGGGGCTCGAACCCCTGACAT TTCGGTATCC chrXI:74423-74982 - 16 2.30e-10 TAAAAATAAG CGACCCCAGTGAGGGTTGAACTCACGATCT TGCGATTAAC chrXI:578712-579419 - 16 2.30e-10 AAGTAAAGAA CTCCTCATAGGGGGCTCGAACCCCTGACAT TTCGGTATCC chrXII:975746-976196 + 62 2.30e-10 AAAAAATAAA CGACCCCAGTGAGGGTTGAACTCACGATCT TGCGATTAA chrXVI:768884-769497 + 67 2.30e-10 AAGTAAAGAA CTCCTCATAGGGGGCTCGAACCCCTGACAT TTCG chrVII:730958-731428 - 38 2.30e-10 AAGCAAAAAA CGACCCCAGTGAGGGTTGAACTCACGATCT TGCGATTAAC chrIII:82194-82698 + 66 2.58e-10 AAAAAAAAAA CTCCGATACGGGGAGTCGAACCCCGGTCTC CACGG chrVII:541723-542155 - 3 2.58e-10 AAAAAGAACA CTCCGATACGGGGAGTCGAACCCCGGTCTC CA chrV:487063-487597 + 51 2.58e-10 ATAACGAATA CTCCGATACGGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrV:354675-355362 - 8 2.58e-10 CAAAAAAGTA CTCCGATACGGGGAGTCGAACCCCGGTCTC CACGGTG chrV:176898-177482 - 1 2.58e-10 CAAAAAAGTA CTCCGATACGGGGAGTCGAACCCCGGTCTC chrV:311693-312317 + 68 3.25e-10 AAGATTTCAT TGGACGCAACCGGAATCGAACCGATGACCT CTT chrXV:300866-301481 - 46 1.07e-09 AGTAAAAAAG GGGGCGAGCTGGGAATTGAACCCAGGGCCT CTCGCATGCT chrXIV:546543-547781 - 55 1.07e-09 AAAAGATAAC GGGGCGAGCTGGGAATTGAACCCAGGGCCT CTCGCATGCT chrX:204545-204645 - 9 1.19e-09 CAAAAAAAAT CTCCGCGACGGGGAATTGAACCCCGATCTG GCACGCGA chrVII:544305-544912 + 19 1.19e-09 AGAAAAAAAT CTCCGCGACGGGGAATTGAACCCCGATCTG GCACGCGACA chrXII:426907-427490 - 26 1.19e-09 TAAAAAAATT CTCCGCGACGGGGAATTGAACCCCGATCTG GCACGCGACA chrXI:513115-513629 + 10 1.19e-09 ATAAAAAAT CTCCGCGACGGGGAATTGAACCCCGATCTG GCACGCGACA chrXVI:744074-744587 - 46 1.46e-09 GAAAAAATTT TGCCACCTGTCAGAATTGAACTAACGACCT TTGCATTACA chrIV:1095156-1095648 + 18 1.78e-09 AAAATAAAAA TGCGAACTCTGTGGATCGAACACAGGACCT CCAGATATCT chrXII:448461-448846 + 47 1.78e-09 GCAAAAAAGA AGGTCCTACCCGGATTCGAACCGGGGTTGT CCGGATCAAA chrV:492127-492547 + 65 2.17e-09 AAAAATAATC CTTCCCCGCCAGGACTTGAACCTGGAATCT TCTGGT chrXI:490745-491320 - 29 2.17e-09 TAAAAAAATT CTTCCCCGCCAGGACTTGAACCTGGAATCT TCTGGTTCGT chrIV:619717-620212 + 55 2.17e-09 TATAAAAAAT CTTCCCCGCCAGGACTTGAACCTGGAATCT TCTGGTTCGT chrII:266204-266683 - 28 2.90e-09 TTCAAAAAAA TGCTTCCAATCGGATTTGAACCGATGATCT CCACATTACT chrVIII:115886-116403 + 13 2.90e-09 ATGCAAAAAA TGCTTCCAATCGGATTTGAACCGATGATCT CCACATTACT chrIV:568683-569301 - 64 3.50e-09 AAAAATT CTCCGTGACGGGGAATTGAACCCCGATCTG GCACGCGACA chrII:405593-406229 - 59 3.84e-09 AGAAACAAAG CACTCACGATGGGGGTCGAACCCATAATCT TCTGATTAGA chrX:374184-374284 + 4 3.84e-09 AAG CACTCACGATGGGGGTCGAACCCATAATCT TCTGATTAGA chrIV:980754-981167 + 64 5.52e-09 TTGGTAAAAA CGACAACTGCAGGACTCGAACCTGCGCGGG CAAAGCC chrII:226987-227352 - 8 5.52e-09 CAAAAAATAA CGACAACTGCAGGACTCGAACCTGCGCGGG CAAAGCC chrIV:437561-438144 - 22 5.52e-09 ATAAAAATGA CGACAACTGCAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrXIII:258998-259382 + 18 5.52e-09 CAAAAAATAA CGACAACTGCAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrXII:167714-168235 + 20 5.52e-09 GAAAAAATAA CGACAACTGCAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrVIII:358258-358790 + 4 1.01e-08 ATA TGCGAATTCTGTGGATCGAACACAGGACCT CCAGATAACT chrVII:440474-441045 + 7 1.01e-08 TTATTA TGCGAATTCTGTGGATCGAACACAGGACCT CCAGATAACT chrVIII:62535-63028 - 66 1.01e-08 ATAAA TGCCATCTCCTAGAATCGAACCAGGGTTTC ATCGGCCACA chrXIII:362946-363332 - 17 1.01e-08 AAAAAGAAAA TGCCATCTCCTAGAATCGAACCAGGGTTTC ATCGGCCACA chrXVI:435630-436197 + 30 1.41e-08 AAAAAAAGAA AGCTCGCACTCAGGATCGAACTAAGGACCA ACAGATTTGC chrV:288184-288749 + 27 1.80e-08 ATAAAAAAAA CGACACCAGCAGGATTTGAACCAGCGCGGG CAGAGCCCAA chrXVI:689359-689860 - 58 1.80e-08 AAAAATAATA CGACACCAGCAGGATTTGAACCAGCGCGGG CAGAGCCCAA chrX:415724-415824 + 6 2.27e-08 TAAAT TGAAACGGACAGGAATTGAACCTGCAACCC TTCGATTGCA chrIV:946143-946645 - 27 6.75e-08 CATAAAAAAA TCTCCCGGGGGCGAGTCGAACGCCCGATCT CAAGATTTCG chrXIII:837729-838225 - 60 6.75e-08 TAAAAAAATA TCTCCCGGGGGCGAGTCGAACGCCCGATCT CAAGATTTCG chrII:9388-9932 - 27 1.14e-07 AAAAAAATAC TGAAGGATGCGAGGTTCGAACTCGCGCGGA CAACCGTCCA chrX:424203-424303 + 27 1.14e-07 CAAAAAATAC TGAAGGATGCGAGGTTCGAACTCGCGCGGA CAACCGTCCA chrV:99900-100408 - 71 1.56e-07 . TAGCGCCGCTCGGTTTCGATCCGAGGACAT CAGGGTTATG chrXVI:338454-339284 + 29 1.56e-07 AAAATAAATT TAGCGCCGCTCGGTTTCGATCCGAGGACAT CAGGGTTATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGMYCHMDCSSRGRATCGAACCCVSGACCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1256812-1257301 1.3e-13 1_[+1]_69 chrVII:845296-846147 3.9e-13 18_[-1]_52 chrXV:226417-226892 3.9e-13 6_[+1]_64 chrVI:180681-181267 3.9e-13 49_[+1]_21 chrXV:281950-282423 3.9e-13 68_[-1]_2 chrXVI:572042-572643 3.9e-13 17_[-1]_53 chrIV:1075268-1075737 1.6e-12 19_[+1]_51 chrVIII:475490-475893 1.6e-12 64_[+1]_6 chrIII:123324-123828 2.5e-12 50_[+1]_20 chrIV:488409-489169 6.4e-12 57_[+1]_13 chrII:326493-327060 6.4e-12 65_[+1]_5 chrXI:307896-308410 2e-11 40_[+1]_30 chrV:438501-438998 2e-11 44_[-1]_26 chrX:378210-378310 2e-11 69_[-1]_1 chrXIII:420308-420872 2e-11 47_[+1]_23 chrVII:823356-823725 2e-11 35_[-1]_35 chrVII:412079-412573 2e-11 17_[+1]_53 chrXIII:586399-586894 2e-11 39_[+1]_31 chrIV:1016950-1017508 3.1e-11 27_[+1]_43 chrXIII:572647-573163 5.9e-11 27_[+1]_43 chrX:422663-422763 5.9e-11 36_[-1]_34 chrX:390784-390884 5.9e-11 29_[+1]_41 chrV:443019-443377 1.1e-10 53_[+1]_17 chrXIV:569660-570165 1.1e-10 4_[+1]_66 chrII:197255-197843 1.1e-10 38_[-1]_32 chrXII:1051907-1052200 1.1e-10 67_[+1]_3 chrVIII:466799-467316 1.3e-10 24_[-1]_46 chrVII:779383-779921 1.4e-10 55_[-1]_15 chrXIV:96008-96553 1.4e-10 10_[+1]_60 chrIV:884257-884656 1.8e-10 57_[-1]_13 chrIV:1201556-1202002 2e-10 63_[-1]_7 chrXIII:480403-480817 2e-10 60_[+1]_10 chrIX:300038-300508 2e-10 4_[+1]_66 chrIII:127594-127925 2.3e-10 50_[-1]_20 chrXV:438416-439091 2.3e-10 5_[-1]_65 chrIV:359350-359902 2.3e-10 66_[-1]_4 chrXI:74423-74982 2.3e-10 15_[-1]_55 chrXI:578712-579419 2.3e-10 15_[-1]_55 chrXII:975746-976196 2.3e-10 61_[+1]_9 chrXVI:768884-769497 2.3e-10 66_[+1]_4 chrVII:730958-731428 2.3e-10 37_[-1]_33 chrIII:82194-82698 2.6e-10 65_[+1]_5 chrVII:541723-542155 2.6e-10 2_[-1]_68 chrV:487063-487597 2.6e-10 50_[+1]_20 chrV:354675-355362 2.6e-10 7_[-1]_63 chrV:176898-177482 2.6e-10 [-1]_70 chrV:311693-312317 3.3e-10 67_[+1]_3 chrXV:300866-301481 1.1e-09 45_[-1]_25 chrXIV:546543-547781 1.1e-09 54_[-1]_16 chrX:204545-204645 1.2e-09 8_[-1]_62 chrVII:544305-544912 1.2e-09 18_[+1]_52 chrXII:426907-427490 1.2e-09 25_[-1]_45 chrXI:513115-513629 1.2e-09 9_[+1]_61 chrXVI:744074-744587 1.5e-09 45_[-1]_25 chrIV:1095156-1095648 1.8e-09 17_[+1]_53 chrXII:448461-448846 1.8e-09 46_[+1]_24 chrV:492127-492547 2.2e-09 64_[+1]_6 chrXI:490745-491320 2.2e-09 28_[-1]_42 chrIV:619717-620212 2.2e-09 54_[+1]_16 chrII:266204-266683 2.9e-09 27_[-1]_43 chrVIII:115886-116403 2.9e-09 12_[+1]_58 chrIV:568683-569301 3.5e-09 63_[-1]_7 chrII:405593-406229 3.8e-09 58_[-1]_12 chrX:374184-374284 3.8e-09 3_[+1]_67 chrIV:980754-981167 5.5e-09 63_[+1]_7 chrII:226987-227352 5.5e-09 7_[-1]_63 chrIV:437561-438144 5.5e-09 21_[-1]_49 chrXIII:258998-259382 5.5e-09 17_[+1]_53 chrXII:167714-168235 5.5e-09 19_[+1]_51 chrVIII:358258-358790 1e-08 3_[+1]_67 chrVII:440474-441045 1e-08 6_[+1]_64 chrVIII:62535-63028 1e-08 65_[-1]_5 chrXIII:362946-363332 1e-08 16_[-1]_54 chrXVI:435630-436197 1.4e-08 29_[+1]_41 chrV:288184-288749 1.8e-08 26_[+1]_44 chrXVI:689359-689860 1.8e-08 57_[-1]_13 chrX:415724-415824 2.3e-08 5_[+1]_65 chrIV:946143-946645 6.7e-08 26_[-1]_44 chrXIII:837729-838225 6.7e-08 59_[-1]_11 chrII:9388-9932 1.1e-07 26_[-1]_44 chrX:424203-424303 1.1e-07 26_[+1]_44 chrV:99900-100408 1.6e-07 70_[-1] chrXVI:338454-339284 1.6e-07 28_[+1]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGMYCHMDCSSRGRATCGAACCCVSGACCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGMYCHMDCSSRGRATCGAACCCVSGACCT width=30 seqs=83 chrIV:1256812-1257301 ( 2) TGCGGAAGCCGGGAATCGAACCCGGGCCCC 1 chrVII:845296-846147 ( 19) TGCGCAAGCCCGGAATCGAACCGGGGGCCC 1 chrXV:226417-226892 ( 7) TGCGCAAGCCCGGAATCGAACCGGGGGCCC 1 chrVI:180681-181267 ( 50) TGCGCAAGCCCGGAATCGAACCGGGGGCCC 1 chrXV:281950-282423 ( 69) TGCGCAAGCCCGGAATCGAACCGGGGGCCC 1 chrXVI:572042-572643 ( 18) TGCGCAAGCCCGGAATCGAACCGGGGGCCC 1 chrIV:1075268-1075737 ( 20) TGTTCCAACCGAGGATCGAACTCGGGACCT 1 chrVIII:475490-475893 ( 65) TGTTCCAACCGAGGATCGAACTCGGGACCT 1 chrIII:123324-123828 ( 51) GGGGCGAGCCGGGACTCGAACCCGGGACCT 1 chrIV:488409-489169 ( 58) TGATCCAACCGAGGTTCGAACTCGGGATCT 1 chrII:326493-327060 ( 66) TGATCCAACCGAGGTTCGAACTCGGGATCT 1 chrXI:307896-308410 ( 41) TGATTTCGCCCAGGATCGAACTGGGGACGT 1 chrV:438501-438998 ( 45) TGATTTCGCCCAGGATCGAACTGGGGACGT 1 chrX:378210-378310 ( 70) TGATTTCGCCCAGGATCGAACTGGGGACGT 1 chrXIII:420308-420872 ( 48) TGATTTCGCCCAGGATCGAACTGGGGACGT 1 chrVII:823356-823725 ( 36) TGATTTCGCCCAGGATCGAACTGGGGACGT 1 chrVII:412079-412573 ( 18) TGATTTCGCCCAGGATCGAACTGGGGACGT 1 chrXIII:586399-586894 ( 40) TGATTTCGCCCAGGATCGAACTGGGGACGT 1 chrIV:1016950-1017508 ( 28) CTCCGAAGCGGGGAGTCGAACCCCGGTCTC 1 chrXIII:572647-573163 ( 28) TGCTCCAGGGGAGGTTCGAACTCTCGACCT 1 chrX:422663-422763 ( 37) TGCTCCAGGGGAGGTTCGAACTCTCGACCT 1 chrX:390784-390884 ( 30) TGCTCCAGGGGAGGTTCGAACTCTCGACCT 1 chrV:443019-443377 ( 54) TGGTCTCTAGCGGGATCGAACCGCTGATCC 1 chrXIV:569660-570165 ( 5) TGGTCTCTAGCGGGATCGAACCGCTGATCC 1 chrII:197255-197843 ( 39) TGGTCTCTAGCGGGATCGAACCGCTGATCC 1 chrXII:1051907-1052200 ( 68) TGGTCTCTAGCGGGATCGAACCGCTGATCC 1 chrVIII:466799-467316 ( 25) TGCCACCTGCCAGAATTGAACTAGCGACCT 1 chrVII:779383-779921 ( 56) TGAGCGGTACGAGAATCGAACCCGTGTCCC 1 chrXIV:96008-96553 ( 11) TGAGCGGTACGAGAATCGAACCCGTGTCCC 1 chrIV:884257-884656 ( 58) TGCTCGAGGTGGGGTTTGAACCCACGACGG 1 chrIV:1201556-1202002 ( 64) AGCCCTGTAGGGGGCTCGAACCCCTAACCT 1 chrXIII:480403-480817 ( 61) AGCCCTGTAGGGGGCTCGAACCCCTAACCT 1 chrIX:300038-300508 ( 5) AGCCCTGTAGGGGGCTCGAACCCCTAACCT 1 chrIII:127594-127925 ( 51) CGACCCCAGTGAGGGTTGAACTCACGATCT 1 chrXV:438416-439091 ( 6) CTCCTCATAGGGGGCTCGAACCCCTGACAT 1 chrIV:359350-359902 ( 67) CTCCTCATAGGGGGCTCGAACCCCTGACAT 1 chrXI:74423-74982 ( 16) CGACCCCAGTGAGGGTTGAACTCACGATCT 1 chrXI:578712-579419 ( 16) CTCCTCATAGGGGGCTCGAACCCCTGACAT 1 chrXII:975746-976196 ( 62) CGACCCCAGTGAGGGTTGAACTCACGATCT 1 chrXVI:768884-769497 ( 67) CTCCTCATAGGGGGCTCGAACCCCTGACAT 1 chrVII:730958-731428 ( 38) CGACCCCAGTGAGGGTTGAACTCACGATCT 1 chrIII:82194-82698 ( 66) CTCCGATACGGGGAGTCGAACCCCGGTCTC 1 chrVII:541723-542155 ( 3) CTCCGATACGGGGAGTCGAACCCCGGTCTC 1 chrV:487063-487597 ( 51) CTCCGATACGGGGAGTCGAACCCCGGTCTC 1 chrV:354675-355362 ( 8) CTCCGATACGGGGAGTCGAACCCCGGTCTC 1 chrV:176898-177482 ( 1) CTCCGATACGGGGAGTCGAACCCCGGTCTC 1 chrV:311693-312317 ( 68) TGGACGCAACCGGAATCGAACCGATGACCT 1 chrXV:300866-301481 ( 46) GGGGCGAGCTGGGAATTGAACCCAGGGCCT 1 chrXIV:546543-547781 ( 55) GGGGCGAGCTGGGAATTGAACCCAGGGCCT 1 chrX:204545-204645 ( 9) CTCCGCGACGGGGAATTGAACCCCGATCTG 1 chrVII:544305-544912 ( 19) CTCCGCGACGGGGAATTGAACCCCGATCTG 1 chrXII:426907-427490 ( 26) CTCCGCGACGGGGAATTGAACCCCGATCTG 1 chrXI:513115-513629 ( 10) CTCCGCGACGGGGAATTGAACCCCGATCTG 1 chrXVI:744074-744587 ( 46) TGCCACCTGTCAGAATTGAACTAACGACCT 1 chrIV:1095156-1095648 ( 18) TGCGAACTCTGTGGATCGAACACAGGACCT 1 chrXII:448461-448846 ( 47) AGGTCCTACCCGGATTCGAACCGGGGTTGT 1 chrV:492127-492547 ( 65) CTTCCCCGCCAGGACTTGAACCTGGAATCT 1 chrXI:490745-491320 ( 29) CTTCCCCGCCAGGACTTGAACCTGGAATCT 1 chrIV:619717-620212 ( 55) CTTCCCCGCCAGGACTTGAACCTGGAATCT 1 chrII:266204-266683 ( 28) TGCTTCCAATCGGATTTGAACCGATGATCT 1 chrVIII:115886-116403 ( 13) TGCTTCCAATCGGATTTGAACCGATGATCT 1 chrIV:568683-569301 ( 64) CTCCGTGACGGGGAATTGAACCCCGATCTG 1 chrII:405593-406229 ( 59) CACTCACGATGGGGGTCGAACCCATAATCT 1 chrX:374184-374284 ( 4) CACTCACGATGGGGGTCGAACCCATAATCT 1 chrIV:980754-981167 ( 64) CGACAACTGCAGGACTCGAACCTGCGCGGG 1 chrII:226987-227352 ( 8) CGACAACTGCAGGACTCGAACCTGCGCGGG 1 chrIV:437561-438144 ( 22) CGACAACTGCAGGACTCGAACCTGCGCGGG 1 chrXIII:258998-259382 ( 18) CGACAACTGCAGGACTCGAACCTGCGCGGG 1 chrXII:167714-168235 ( 20) CGACAACTGCAGGACTCGAACCTGCGCGGG 1 chrVIII:358258-358790 ( 4) TGCGAATTCTGTGGATCGAACACAGGACCT 1 chrVII:440474-441045 ( 7) TGCGAATTCTGTGGATCGAACACAGGACCT 1 chrVIII:62535-63028 ( 66) TGCCATCTCCTAGAATCGAACCAGGGTTTC 1 chrXIII:362946-363332 ( 17) TGCCATCTCCTAGAATCGAACCAGGGTTTC 1 chrXVI:435630-436197 ( 30) AGCTCGCACTCAGGATCGAACTAAGGACCA 1 chrV:288184-288749 ( 27) CGACACCAGCAGGATTTGAACCAGCGCGGG 1 chrXVI:689359-689860 ( 58) CGACACCAGCAGGATTTGAACCAGCGCGGG 1 chrX:415724-415824 ( 6) TGAAACGGACAGGAATTGAACCTGCAACCC 1 chrIV:946143-946645 ( 27) TCTCCCGGGGGCGAGTCGAACGCCCGATCT 1 chrXIII:837729-838225 ( 60) TCTCCCGGGGGCGAGTCGAACGCCCGATCT 1 chrII:9388-9932 ( 27) TGAAGGATGCGAGGTTCGAACTCGCGCGGA 1 chrX:424203-424303 ( 27) TGAAGGATGCGAGGTTCGAACTCGCGCGGA 1 chrV:99900-100408 ( 71) TAGCGCCGCTCGGTTTCGATCCGAGGACAT 1 chrXVI:338454-339284 ( 29) TAGCGCCGCTCGGTTTCGATCCGAGGACAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGMYCHMDCSSRGRATCGAACCCVSGACCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 9.97796 E= 2.7e-325 -235 96 -241 78 -268 -299 189 -51 -3 133 -53 -187 -268 133 -18 -3 -77 129 1 -98 -22 110 -67 -59 -9 126 -29 -168 -3 -1302 96 8 -43 143 40 -1302 -1302 126 76 -51 -122 65 150 -368 8 -299 168 -309 -1302 -1302 238 -1302 75 -1302 126 -368 57 1 -18 -77 -1302 -1302 -1302 170 -1302 194 -1302 -22 -1302 -1302 238 -1302 170 -1302 -1302 -1302 166 -1302 -1302 -368 -1302 238 -1302 -1302 -309 179 -299 -15 -187 150 47 -151 -43 59 122 -309 -1302 47 143 -51 -87 -1302 212 -1302 97 -67 -118 -68 -1302 171 -82 -22 -209 153 18 -98 -309 40 -29 85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGMYCHMDCSSRGRATCGAACCCVSGACCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 83 E= 2.7e-325 0.060241 0.373494 0.036145 0.530120 0.048193 0.024096 0.710843 0.216867 0.301205 0.481928 0.132530 0.084337 0.048193 0.481928 0.168675 0.301205 0.180723 0.469880 0.192771 0.156627 0.265060 0.409639 0.120482 0.204819 0.289157 0.457831 0.156627 0.096386 0.301205 0.000000 0.373494 0.325301 0.228916 0.518072 0.253012 0.000000 0.000000 0.457831 0.325301 0.216867 0.132530 0.301205 0.542169 0.024096 0.325301 0.024096 0.614458 0.036145 0.000000 0.000000 1.000000 0.000000 0.518072 0.000000 0.457831 0.024096 0.457831 0.192771 0.168675 0.180723 0.000000 0.000000 0.000000 1.000000 0.000000 0.734940 0.000000 0.265060 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.975904 0.000000 0.000000 0.024096 0.000000 1.000000 0.000000 0.000000 0.036145 0.662651 0.024096 0.277108 0.084337 0.542169 0.265060 0.108434 0.228916 0.289157 0.445783 0.036145 0.000000 0.265060 0.518072 0.216867 0.168675 0.000000 0.831325 0.000000 0.602410 0.120482 0.084337 0.192771 0.000000 0.626506 0.108434 0.265060 0.072289 0.554217 0.216867 0.156627 0.036145 0.253012 0.156627 0.554217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGMYCHMDCSSRGRATCGAACCCVSGACCT MEME-1 regular expression -------------------------------------------------------------------------------- [TC][GT][CA][CT]C[CAT][CA][GTA][CGA][CGT][GC][GA]G[AG]AT[CT]GAAC[CT][CG][GCA][GCT]GA[CT][CG][TC] -------------------------------------------------------------------------------- Time 350.46 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCVARTKGGTARVGCGYMNGACTNNTAA MEME-2 width = 29 sites = 43 llr = 865 E-value = 5.7e-148 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCVARTKGGTARVGCGYMNGACTNNTAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:126411::1a43::1133:7::23299 pos.-specific C 17631::2::1::3:a:3522:9:32::: probability G 83231423a71:63a:9:1272::23:1: matrix T ::212175:37::::::522111a337:1 bits 2.4 * ** 2.1 * ** 1.9 * ** * 1.7 * * *** ** Relative 1.4 ** ** * *** ** * Entropy 1.2 ** ** ** *** * ** ** (29.0 bits) 1.0 ** ** ** *** * ** ** 0.7 *** * ** ** *** * ** *** 0.5 *** ** ********** **** *** 0.2 ******************* **** *** 0.0 ----------------------------- Multilevel GCCCAATTGGTAGCGCGTCAGACTCATAA consensus G G G G T AG CAGC TGA sequence A A TT AT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVARTKGGTARVGCGYMNGACTNNTAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXV:353910-354312 - 15 1.89e-13 TGCTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrIX:174834-175250 + 48 1.89e-13 AGCTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrXV:113608-114020 + 47 1.89e-13 AGCTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrVIII:115886-116403 - 48 1.89e-13 AGCTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrIV:1201556-1202002 + 30 6.67e-13 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrV:435616-435995 - 32 6.67e-13 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrXVI:581836-582327 + 40 6.67e-13 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrX:414779-414879 + 59 6.67e-13 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrIII:151127-151602 - 5 6.67e-13 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCAT chrIX:300038-300508 - 40 6.67e-13 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrVII:115340-115725 + 15 6.84e-12 ATCCTTGTTA GCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrIV:359350-359902 + 10 6.84e-12 TCCTTGTTA GCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrV:288184-288749 - 71 7.86e-12 G GCCGAGTGGTTAAGGCGACAGACTTGAAA TCTGTTGGGC chrXVI:689359-689860 + 15 7.86e-12 GGGCACTATG GCCGAGTGGTTAAGGCGACAGACTTGAAA TCTGTTGGGC chrX:517664-517764 - 24 3.76e-11 TAAGCGCCGT GGCGCAGTGGAAGCGCGCAGGGCTCATAA CCCTGATGTC chrV:99900-100408 + 37 3.76e-11 TAAGCGCCGT GGCGCAGTGGAAGCGCGCAGGGCTCATAA CCCTGATGTC chrXVI:338454-339284 - 64 3.76e-11 AGCGCCGT GGCGCAGTGGAAGCGCGCAGGGCTCATAA CCCTGATGTC chrII:405593-406229 + 25 9.58e-11 TAGCTCGCGT GGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrX:374184-374284 - 39 9.58e-11 TAGCTCGCGT GGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrXIII:747704-748180 - 35 9.58e-11 TAGCTCGCGT GGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrXIII:131674-132107 - 20 9.58e-11 TAGCTCGCGT GGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrVIII:358258-358790 - 58 1.84e-10 AGCGGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrIV:1095156-1095648 - 72 1.84e-10 . GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTTG chrVII:440474-441045 - 61 1.84e-10 TGCGGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrXIII:572647-573163 - 63 2.05e-10 GCTTCAGTA GCTCAGTAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrX:422663-422763 + 3 2.05e-10 TA GCTCAGTAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrX:390784-390884 - 65 2.05e-10 TTCAGTA GCTCAGTAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrXIII:258998-259382 - 62 6.11e-10 TGGCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrXII:167714-168235 - 64 6.11e-10 GCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrVII:1003989-1004434 + 63 2.69e-09 TTGCCTCCTT AGCTTAGTGGTAGAGCGTTGCACTTGTAA TGCAAAGGT chrXVI:744074-744587 + 12 2.69e-09 AAGCCTCCTT AGCTTAGTGGTAGAGCGTTGCACTTGTAA TGCAAAGGTC chrVII:661533-661958 + 62 2.69e-09 TTGCCTCCTT AGCTTAGTGGTAGAGCGTTGCACTTGTAA TGCAAAGGTC chrXV:274472-274970 + 11 4.65e-09 TGTCCCAGTG GCCGAGTGGTTAAGGCGATGCCCTGCTAT TTCCTCAGAA chrIII:127594-127925 + 17 1.10e-08 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrXIV:632434-632803 + 41 1.10e-08 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrVII:730958-731428 + 4 1.10e-08 TGG CCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrXVI:435630-436197 - 65 1.17e-08 CTCGTAT GGCGCAGTGGTAGCGCAGCAGATTGCAAA TCTGTTGGTC chrVII:287167-287696 - 38 1.85e-08 ATGAAGCGGT GGCTCAATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrXI:302699-303225 + 14 1.85e-08 ATGAAGCGGT GGCTCAATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrXIV:602103-602565 + 38 3.37e-08 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXIV:569660-570165 - 40 3.37e-08 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrII:197255-197843 + 5 3.37e-08 TTGG CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXII:656816-657217 - 3 9.11e-08 TGGGCGTGTG GCGTAGTCGGTAGCGCGCTCCCTTAGCAT GG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVARTKGGTARVGCGYMNGACTNNTAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:353910-354312 1.9e-13 14_[-2]_57 chrIX:174834-175250 1.9e-13 47_[+2]_24 chrXV:113608-114020 1.9e-13 46_[+2]_25 chrVIII:115886-116403 1.9e-13 47_[-2]_24 chrIV:1201556-1202002 6.7e-13 29_[+2]_42 chrV:435616-435995 6.7e-13 31_[-2]_40 chrXVI:581836-582327 6.7e-13 39_[+2]_32 chrX:414779-414879 6.7e-13 58_[+2]_13 chrIII:151127-151602 6.7e-13 4_[-2]_67 chrIX:300038-300508 6.7e-13 39_[-2]_32 chrVII:115340-115725 6.8e-12 14_[+2]_57 chrIV:359350-359902 6.8e-12 9_[+2]_62 chrV:288184-288749 7.9e-12 70_[-2]_1 chrXVI:689359-689860 7.9e-12 14_[+2]_57 chrX:517664-517764 3.8e-11 23_[-2]_48 chrV:99900-100408 3.8e-11 36_[+2]_35 chrXVI:338454-339284 3.8e-11 63_[-2]_8 chrII:405593-406229 9.6e-11 24_[+2]_47 chrX:374184-374284 9.6e-11 38_[-2]_33 chrXIII:747704-748180 9.6e-11 34_[-2]_37 chrXIII:131674-132107 9.6e-11 19_[-2]_52 chrVIII:358258-358790 1.8e-10 57_[-2]_14 chrIV:1095156-1095648 1.8e-10 71_[-2] chrVII:440474-441045 1.8e-10 60_[-2]_11 chrXIII:572647-573163 2e-10 62_[-2]_9 chrX:422663-422763 2e-10 2_[+2]_69 chrX:390784-390884 2e-10 64_[-2]_7 chrXIII:258998-259382 6.1e-10 61_[-2]_10 chrXII:167714-168235 6.1e-10 63_[-2]_8 chrVII:1003989-1004434 2.7e-09 62_[+2]_9 chrXVI:744074-744587 2.7e-09 11_[+2]_60 chrVII:661533-661958 2.7e-09 61_[+2]_10 chrXV:274472-274970 4.6e-09 10_[+2]_61 chrIII:127594-127925 1.1e-08 16_[+2]_55 chrXIV:632434-632803 1.1e-08 40_[+2]_31 chrVII:730958-731428 1.1e-08 3_[+2]_68 chrXVI:435630-436197 1.2e-08 64_[-2]_7 chrVII:287167-287696 1.8e-08 37_[-2]_34 chrXI:302699-303225 1.8e-08 13_[+2]_58 chrXIV:602103-602565 3.4e-08 37_[+2]_34 chrXIV:569660-570165 3.4e-08 39_[-2]_32 chrII:197255-197843 3.4e-08 4_[+2]_67 chrXII:656816-657217 9.1e-08 2_[-2]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVARTKGGTARVGCGYMNGACTNNTAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCVARTKGGTARVGCGYMNGACTNNTAA width=29 seqs=43 chrXV:353910-354312 ( 15) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrIX:174834-175250 ( 48) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrXV:113608-114020 ( 47) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrVIII:115886-116403 ( 48) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrIV:1201556-1202002 ( 30) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrV:435616-435995 ( 32) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrXVI:581836-582327 ( 40) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrX:414779-414879 ( 59) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrIII:151127-151602 ( 5) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrIX:300038-300508 ( 40) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrVII:115340-115725 ( 15) GCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrIV:359350-359902 ( 10) GCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrV:288184-288749 ( 71) GCCGAGTGGTTAAGGCGACAGACTTGAAA 1 chrXVI:689359-689860 ( 15) GCCGAGTGGTTAAGGCGACAGACTTGAAA 1 chrX:517664-517764 ( 24) GGCGCAGTGGAAGCGCGCAGGGCTCATAA 1 chrV:99900-100408 ( 37) GGCGCAGTGGAAGCGCGCAGGGCTCATAA 1 chrXVI:338454-339284 ( 64) GGCGCAGTGGAAGCGCGCAGGGCTCATAA 1 chrII:405593-406229 ( 25) GGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrX:374184-374284 ( 39) GGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrXIII:747704-748180 ( 35) GGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrXIII:131674-132107 ( 20) GGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrVIII:358258-358790 ( 58) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrIV:1095156-1095648 ( 72) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrVII:440474-441045 ( 61) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrXIII:572647-573163 ( 63) GCTCAGTAGGAAGAGCGTCAGTCTCATAA 1 chrX:422663-422763 ( 3) GCTCAGTAGGAAGAGCGTCAGTCTCATAA 1 chrX:390784-390884 ( 65) GCTCAGTAGGAAGAGCGTCAGTCTCATAA 1 chrXIII:258998-259382 ( 62) GCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrXII:167714-168235 ( 64) GCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrVII:1003989-1004434 ( 63) AGCTTAGTGGTAGAGCGTTGCACTTGTAA 1 chrXVI:744074-744587 ( 12) AGCTTAGTGGTAGAGCGTTGCACTTGTAA 1 chrVII:661533-661958 ( 62) AGCTTAGTGGTAGAGCGTTGCACTTGTAA 1 chrXV:274472-274970 ( 11) GCCGAGTGGTTAAGGCGATGCCCTGCTAT 1 chrIII:127594-127925 ( 17) CCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrXIV:632434-632803 ( 41) CCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrVII:730958-731428 ( 4) CCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrXVI:435630-436197 ( 65) GGCGCAGTGGTAGCGCAGCAGATTGCAAA 1 chrVII:287167-287696 ( 38) GGCTCAATGGTAGAGCTTTCGACTCCAAT 1 chrXI:302699-303225 ( 14) GGCTCAATGGTAGAGCTTTCGACTCCAAT 1 chrXIV:602103-602565 ( 38) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrXIV:569660-570165 ( 40) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrII:197255-197843 ( 5) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrXII:656816-657217 ( 3) GCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVARTKGGTARVGCGYMNGACTNNTAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 10.3017 E= 5.7e-148 -214 -46 204 -1207 -1207 186 66 -1207 -214 160 -24 -73 -41 76 66 -114 86 -46 -46 -92 52 -1207 113 -114 -114 -1207 -24 118 -214 -24 42 73 -1207 -1207 238 -1207 -1207 -1207 196 -27 -114 -104 -146 118 170 -1207 -1207 -1207 52 -1207 154 -1207 -3 86 86 -1207 -1207 -1207 238 -1207 -1207 238 -1207 -1207 -173 -1207 217 -273 -141 76 -304 79 -27 128 -146 -56 18 -4 28 -41 -1207 13 191 -214 118 -204 -4 -214 -1207 224 -1207 -173 -1207 -1207 -1207 170 -41 76 -4 -27 -14 -4 54 -27 -41 -304 -1207 127 159 -1207 -146 -1207 156 -1207 -1207 -173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVARTKGGTARVGCGYMNGACTNNTAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 43 E= 5.7e-148 0.069767 0.139535 0.790698 0.000000 0.000000 0.697674 0.302326 0.000000 0.069767 0.581395 0.162791 0.186047 0.232558 0.325581 0.302326 0.139535 0.558140 0.139535 0.139535 0.162791 0.441860 0.000000 0.418605 0.139535 0.139535 0.000000 0.162791 0.697674 0.069767 0.162791 0.255814 0.511628 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.744186 0.255814 0.139535 0.093023 0.069767 0.697674 1.000000 0.000000 0.000000 0.000000 0.441860 0.000000 0.558140 0.000000 0.302326 0.348837 0.348837 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.093023 0.000000 0.860465 0.046512 0.116279 0.325581 0.023256 0.534884 0.255814 0.465116 0.069767 0.209302 0.348837 0.186047 0.232558 0.232558 0.000000 0.209302 0.720930 0.069767 0.697674 0.046512 0.186047 0.069767 0.000000 0.906977 0.000000 0.093023 0.000000 0.000000 0.000000 1.000000 0.232558 0.325581 0.186047 0.255814 0.279070 0.186047 0.279070 0.255814 0.232558 0.023256 0.000000 0.744186 0.930233 0.000000 0.069767 0.000000 0.906977 0.000000 0.000000 0.093023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCVARTKGGTARVGCGYMNGACTNNTAA MEME-2 regular expression -------------------------------------------------------------------------------- G[CG]C[CGA]A[AG]T[TG]G[GT]TA[GA][CGA]GCG[TC][CAT][AGT][GC]ACT[CTA][AGT][TA]AA -------------------------------------------------------------------------------- Time 665.95 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGYCDAGTKGKWWAAKGS MEME-3 width = 20 sites = 27 llr = 456 E-value = 3.8e-047 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGYCDAGTKGKWWAAKGS MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:3:::2a:::::33772:: pos.-specific C ::::671:::2::1::::37 probability G 7:7a::3:a:5a5::11563 matrix T 3a::434::a3:5672231: bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * * ** * Relative 1.4 *** * *** * * Entropy 1.2 ***** *** * ** (24.3 bits) 1.0 ****** *** ** ** 0.7 ****** ****** * * ** 0.5 ****** ************* 0.2 ******************** 0.0 -------------------- Multilevel GTGGCCTAGTGGTTTAAGGC consensus T A TTG T GAA TTCG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYCDAGTKGKWWAAKGS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrX:617708-617808 + 51 4.33e-11 CAATGGGAGT TTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrV:438501-438998 + 7 2.67e-10 GGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrX:378210-378310 + 32 2.67e-10 AATAGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:469221-469731 + 37 2.67e-10 AATTGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:412079-412573 - 66 2.67e-10 AACTGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXV:663501-664289 - 15 2.67e-10 TAGTGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXII:962809-963300 - 26 4.14e-10 CGACGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXII:734592-734982 + 71 1.18e-09 GTTTGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXI:83996-84466 + 33 2.02e-09 GTATGGAGGG TTGGCCGAGTGGTCTAATGC GGCAGACTTA chrIV:1150720-1151166 - 23 2.32e-09 TTCAGTCCCA GTGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrXV:228053-228574 + 74 3.00e-09 ATTAGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGAC chrIV:1305359-1305870 + 72 1.22e-08 TTAAGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAG chrXV:226417-226892 - 52 1.36e-08 TTCAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXVI:860059-860728 + 42 1.36e-08 ACAAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVI:162042-162391 + 68 1.36e-08 ACAAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:281950-282423 + 34 1.36e-08 AAGCGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrX:396549-396649 - 35 1.36e-08 GTAAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:857090-857811 - 66 1.49e-08 AAGTGGTTGT TTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVI:101185-101563 + 58 2.53e-08 ATTCGGGCGT GTGGTCTAGTGGTATGATTC TCGCTTTGGG chrI:138978-139378 + 30 2.53e-08 GTACGGGCGT GTGGTCTAGTGGTATGATTC TCGCTTTGGG chrVI:210455-210977 - 16 3.51e-08 ACGACTCTCG GTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrX:354010-354110 + 41 3.51e-08 ATCACTCTCG GTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVI:167214-167711 + 31 3.51e-08 ACGACTCTCG GTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrX:542754-542854 - 6 3.51e-08 AATACTCTCG GTAGCCAAGTTGGTTTAAGG CGCAA chrXIII:837729-838225 + 7 3.51e-08 CTCTCG GTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXII:875077-875640 + 74 2.38e-07 CTCATCCTTG TTAGCTCAGTTGGTAGAGCG TTCGGCT chrXVI:731613-732254 + 6 2.89e-07 TTCGC ATAGCTGAGTGGTAAGTGGG CTACCTTTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYCDAGTKGKWWAAKGS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:617708-617808 4.3e-11 50_[+3]_30 chrV:438501-438998 2.7e-10 6_[+3]_74 chrX:378210-378310 2.7e-10 31_[+3]_49 chrV:469221-469731 2.7e-10 36_[+3]_44 chrVII:412079-412573 2.7e-10 65_[-3]_15 chrXV:663501-664289 2.7e-10 14_[-3]_66 chrXII:962809-963300 4.1e-10 25_[-3]_55 chrXII:734592-734982 1.2e-09 70_[+3]_10 chrXI:83996-84466 2e-09 32_[+3]_48 chrIV:1150720-1151166 2.3e-09 22_[-3]_58 chrXV:228053-228574 3e-09 73_[+3]_7 chrIV:1305359-1305870 1.2e-08 71_[+3]_9 chrXV:226417-226892 1.4e-08 51_[-3]_29 chrXVI:860059-860728 1.4e-08 41_[+3]_39 chrVI:162042-162391 1.4e-08 67_[+3]_13 chrXV:281950-282423 1.4e-08 33_[+3]_47 chrX:396549-396649 1.4e-08 34_[-3]_46 chrVII:857090-857811 1.5e-08 65_[-3]_15 chrVI:101185-101563 2.5e-08 57_[+3]_23 chrI:138978-139378 2.5e-08 29_[+3]_51 chrVI:210455-210977 3.5e-08 15_[-3]_65 chrX:354010-354110 3.5e-08 40_[+3]_40 chrVI:167214-167711 3.5e-08 30_[+3]_50 chrX:542754-542854 3.5e-08 5_[-3]_75 chrXIII:837729-838225 3.5e-08 6_[+3]_74 chrXII:875077-875640 2.4e-07 73_[+3]_7 chrXVI:731613-732254 2.9e-07 5_[+3]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYCDAGTKGKWWAAKGS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGYCDAGTKGKWWAAKGS width=20 seqs=27 chrX:617708-617808 ( 51) TTGGCCGAGTGGTTTAAGGC 1 chrV:438501-438998 ( 7) GTGGTCTAGTCGGTTATGGC 1 chrX:378210-378310 ( 32) GTGGTCTAGTCGGTTATGGC 1 chrV:469221-469731 ( 37) GTGGTCTAGTCGGTTATGGC 1 chrVII:412079-412573 ( 66) GTGGTCTAGTCGGTTATGGC 1 chrXV:663501-664289 ( 15) GTGGTCTAGTCGGTTATGGC 1 chrXII:962809-963300 ( 26) TTGGCCGAGTGGTCTAAGGC 1 chrXII:734592-734982 ( 71) TTGGCCCAGTTGGTTAAGGC 1 chrXI:83996-84466 ( 33) TTGGCCGAGTGGTCTAATGC 1 chrIV:1150720-1151166 ( 23) GTGGCCGAGTGGTTAAGGCG 1 chrXV:228053-228574 ( 74) ATGGCCAAGTTGGTTAAGGC 1 chrIV:1305359-1305870 ( 72) TTGGCCGAGTGGTTAAGGCG 1 chrXV:226417-226892 ( 52) GTGGTTTAGTGGTAAAATCC 1 chrXVI:860059-860728 ( 42) GTGGTTTAGTGGTAAAATCC 1 chrVI:162042-162391 ( 68) GTGGTTTAGTGGTAAAATCC 1 chrXV:281950-282423 ( 34) GTGGTTTAGTGGTAAAATCC 1 chrX:396549-396649 ( 35) GTGGTTTAGTGGTAAAATCC 1 chrVII:857090-857811 ( 66) TTGGCCGAGCGGTCTAAGGC 1 chrVI:101185-101563 ( 58) GTGGTCTAGTGGTATGATTC 1 chrI:138978-139378 ( 30) GTGGTCTAGTGGTATGATTC 1 chrVI:210455-210977 ( 16) GTAGCCAAGTTGGTTTAAGG 1 chrX:354010-354110 ( 41) GTAGCCAAGTTGGTTTAAGG 1 chrVI:167214-167711 ( 31) GTAGCCAAGTTGGTTTAAGG 1 chrX:542754-542854 ( 6) GTAGCCAAGTTGGTTTAAGG 1 chrXIII:837729-838225 ( 7) GTAGCCAAGTTGGTTTAAGG 1 chrXII:875077-875640 ( 74) TTAGCTCAGTTGGTAGAGCG 1 chrXVI:731613-732254 ( 6) ATAGCTGAGTGGTAAGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYCDAGTKGKWWAAKGS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48600 bayes= 11.3823 E= 3.8e-047 -206 -1140 180 -25 -1140 -1140 -1140 170 -25 -1140 195 -1140 -1140 -1140 238 -1140 -1140 153 -1140 53 -1140 195 -1140 -25 -47 -137 44 53 170 -1140 -1140 -1140 -1140 -1140 238 -1140 -1140 -237 -1140 164 -1140 -5 144 -6 -1140 -1140 238 -1140 -1140 -1140 133 75 -6 -79 -1140 94 11 -1140 -1140 111 111 -1140 -37 -74 119 -1140 -137 -47 -74 -1140 144 -6 -1140 63 172 -206 -1140 180 80 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYCDAGTKGKWWAAKGS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 27 E= 3.8e-047 0.074074 0.000000 0.666667 0.259259 0.000000 0.000000 0.000000 1.000000 0.259259 0.000000 0.740741 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.555556 0.000000 0.444444 0.000000 0.740741 0.000000 0.259259 0.222222 0.074074 0.259259 0.444444 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.037037 0.000000 0.962963 0.000000 0.185185 0.518519 0.296296 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.481481 0.518519 0.296296 0.111111 0.000000 0.592593 0.333333 0.000000 0.000000 0.666667 0.666667 0.000000 0.148148 0.185185 0.703704 0.000000 0.074074 0.222222 0.185185 0.000000 0.518519 0.296296 0.000000 0.296296 0.629630 0.074074 0.000000 0.666667 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGYCDAGTKGKWWAAKGS MEME-3 regular expression -------------------------------------------------------------------------------- [GT]T[GA]G[CT][CT][TGA]AGT[GT]G[TG][TA][TA]A[AT][GT][GC][CG] -------------------------------------------------------------------------------- Time 976.38 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:301103-301683 9.23e-01 100 chrVIII:103767-105522 7.66e-01 100 chrXIV:585395-586569 6.44e-01 100 chrVII:56417-58879 9.95e-02 100 chrXI:109188-110856 6.39e-01 100 chrI:151347-151830 7.93e-01 100 chrIV:1301536-1302608 9.70e-01 100 chrXVI:821611-822286 9.58e-01 100 chrXIII:352082-353442 1.03e-01 100 chrVII:427017-427736 2.93e-01 100 chrVII:316680-317382 8.50e-01 100 chrXI:258646-259967 6.21e-02 100 chrIV:619717-620212 8.69e-06 54_[+1(2.17e-09)]_16 chrIII:78363-79207 9.60e-01 100 chrXVI:303043-304334 4.39e-01 100 chrIV:1016950-1017508 5.99e-07 27_[+1(3.07e-11)]_43 chrXI:431894-432945 4.80e-01 100 chrIX:300038-300508 1.73e-16 4_[+1(2.05e-10)]_5_[-2(6.67e-13)]_\ 32 chrXIV:331253-332530 6.06e-01 100 chrIV:884257-884656 3.39e-07 57_[-1(1.82e-10)]_13 chrXII:298969-301475 5.59e-01 100 chrIX:255023-257090 2.98e-01 100 chrII:236473-237359 4.87e-01 100 chrXI:312986-314035 8.58e-01 100 chrXV:1027751-1029436 5.47e-01 100 chrVII:328388-329043 7.19e-01 100 chrXV:505003-505437 1.52e-02 100 chrXI:617625-619330 7.43e-01 100 chrVII:730958-731428 1.33e-11 3_[+2(1.10e-08)]_5_[-1(2.30e-10)]_\ 33 chrXV:663501-664289 3.22e-06 14_[-3(2.67e-10)]_66 chrXII:1028815-1030353 1.01e-01 100 chrV:176898-177482 4.83e-06 [-1(2.58e-10)]_70 chrXVI:572042-572643 3.26e-10 17_[-1(3.94e-13)]_53 chrII:413499-415278 7.43e-02 100 chrIV:722412-722861 5.47e-01 100 chrXV:444595-446280 7.74e-01 100 chrIV:835831-836193 4.48e-01 100 chrXIII:498796-500803 5.13e-01 100 chrVI:226427-227276 9.97e-01 100 chrXII:691000-691808 8.98e-02 100 chrVIII:115886-116403 2.31e-19 12_[+1(2.90e-09)]_5_[-2(1.89e-13)]_\ 24 chrX:396549-396649 2.52e-05 34_[-3(1.36e-08)]_46 chrVII:277113-277318 1.71e-01 100 chrVIII:214149-214357 4.23e-01 100 chrXII:796461-796801 5.20e-01 100 chrXIII:131674-132107 1.44e-06 19_[-2(9.58e-11)]_52 chrXIII:872580-873042 3.12e-01 100 chrXIV:529222-530530 7.79e-01 100 chrVII:345826-346744 8.51e-01 100 chrXVI:768884-769497 8.85e-07 66_[+1(2.30e-10)]_4 chrXII:975746-976196 2.32e-06 61_[+1(2.30e-10)]_9 chrIV:1465932-1468472 1.33e-02 100 chrXV:409076-409942 9.29e-01 100 chrXIII:115646-119008 4.19e-01 100 chrVII:786758-788678 9.51e-02 100 chrXI:513115-513629 6.08e-08 9_[+1(1.19e-09)]_16_[-3(2.57e-05)]_\ 25 chrX:227719-227819 5.70e-01 100 chrVI:220069-221500 1.88e-01 100 chrXVI:94999-96109 6.30e-01 100 chrVI:106531-106873 2.91e-01 100 chrXI:202189-203299 2.89e-01 100 chrXII:783879-784510 7.80e-01 100 chrXI:571122-571437 9.69e-01 100 chrX:651870-651970 6.55e-01 100 chrV:295198-295578 6.03e-01 100 chrIV:992698-993266 3.98e-01 100 chrVII:147241-149502 4.87e-01 100 chrXIII:195761-196293 8.48e-01 100 chrXIII:768179-768432 8.80e-01 100 chrII:626346-626802 3.42e-01 100 chrXII:426907-427490 8.43e-06 25_[-1(1.19e-09)]_45 chrVII:882418-884059 4.93e-01 100 chrXI:38590-40154 2.03e-01 100 chrXI:490745-491320 2.69e-05 28_[-1(2.17e-09)]_42 chrXII:897731-899835 4.13e-02 100 chrIII:57363-58729 1.87e-02 29_[+1(2.80e-05)]_41 chrV:354675-355362 3.42e-07 7_[-1(2.58e-10)]_63 chrXII:366035-366543 5.16e-01 100 chrIV:1175604-1176475 7.18e-01 100 chrXII:167714-168235 1.35e-16 19_[+1(5.52e-09)]_14_[-2(6.11e-10)]_\ 8 chrVII:185382-185921 9.74e-01 100 chrXVI:432551-434373 2.19e-01 100 chrVI:95467-95923 1.08e-01 100 chrXIV:518827-519132 3.84e-01 100 chrVII:706053-707175 3.74e-01 100 chrII:162958-164010 1.51e-01 100 chrII:45013-45377 3.99e-01 100 chrXII:818512-818930 7.10e-01 100 chrXV:841474-842171 5.71e-01 100 chrVII:959927-961648 3.08e-01 100 chrVII:283-891 3.56e-01 100 chrX:662524-662624 2.01e-02 100 chrXV:903778-904662 4.90e-01 100 chrIV:306311-307837 6.62e-01 100 chrXIV:745420-746733 9.19e-01 100 chrVII:648736-650555 4.84e-01 100 chrXVI:94661-94830 4.61e-01 100 chrXII:448461-448846 7.81e-06 46_[+1(1.78e-09)]_24 chrXVI:810591-811248 7.33e-01 100 chrVIII:237177-238138 8.42e-01 100 chrV:491059-491959 4.02e-01 100 chrXI:578712-579419 3.40e-07 15_[-1(2.30e-10)]_55 chrXVI:586049-586274 1.90e-01 100 chrXII:962809-963300 1.56e-08 25_[-3(4.14e-10)]_55 chrXII:261295-264413 9.63e-01 100 chrII:625287-625968 6.74e-01 100 chrIV:354979-356978 3.28e-02 100 chrXVI:879746-880581 9.70e-01 100 chrIII:151127-151602 1.48e-09 4_[-2(6.67e-13)]_67 chrXIV:632434-632803 3.49e-11 36_[+3(3.00e-09)]_44 chrXII:1051907-1052200 1.49e-07 67_[+1(1.12e-10)]_3 chrIX:98170-99509 8.94e-01 100 chrV:492127-492547 2.74e-05 64_[+1(2.17e-09)]_6 chrVI:222764-223814 1.65e-01 100 chrV:77529-79936 6.16e-02 37_[+3(6.26e-05)]_43 chrXVI:927771-928138 1.11e-02 14_[+2(4.43e-05)]_57 chrXV:377186-377451 6.27e-01 100 chrXII:837609-839433 6.52e-01 100 chrIX:45160-47063 8.28e-01 100 chrXV:281950-282423 1.67e-14 33_[+3(1.36e-08)]_15_[-1(3.94e-13)]_\ 2 chrVII:661533-661958 3.55e-06 61_[+2(2.69e-09)]_10 chrI:171278-172581 2.56e-01 100 chrII:408636-408922 7.95e-01 100 chrIV:599315-600285 4.44e-01 100 chrV:396733-398064 1.12e-01 100 chrVII:479184-482985 2.86e-01 100 chrXV:889835-891360 2.13e-01 100 chrXIII:504915-505354 7.20e-01 100 chrXV:722939-725872 2.88e-01 100 chrX:414779-414879 1.48e-09 58_[+2(6.67e-13)]_13 chrVII:589452-589769 5.31e-01 100 chrX:348790-348890 9.45e-01 100 chrXII:522573-523845 7.93e-01 100 chrXII:241729-241964 8.78e-01 100 chrXVI:770567-773233 5.78e-01 100 chrXIII:372170-372655 2.66e-02 100 chrXIV:229565-230779 5.42e-01 100 chrIV:1251488-1252046 6.91e-01 100 chrVII:516231-518980 4.84e-01 100 chrXI:364468-365247 2.66e-01 100 chrXI:219569-220120 8.23e-01 100 chrIII:123324-123828 5.06e-08 50_[+1(2.53e-12)]_20 chrIII:220752-222950 9.04e-01 100 chrXV:464282-464943 9.07e-01 100 chrIV:45172-46200 3.30e-01 100 chrXIII:362946-363332 1.30e-04 16_[-1(1.01e-08)]_54 chrVII:438635-440055 7.29e-02 100 chrX:424203-424303 1.19e-05 26_[+1(1.14e-07)]_15_[-2(4.56e-05)] chrX:702532-702632 9.89e-01 100 chrVII:914907-916833 5.24e-02 100 chrXIII:747704-748180 4.64e-07 34_[-2(9.58e-11)]_37 chrVII:846971-848292 1.31e-02 12_[+2(9.12e-06)]_59 chrXIII:270699-271863 2.58e-01 100 chrII:9388-9932 2.10e-04 26_[-1(1.14e-07)]_44 chrVIII:125999-126231 9.09e-01 100 chrIV:1269891-1271219 8.89e-01 100 chrVII:544305-544912 6.08e-08 18_[+1(1.19e-09)]_16_[-3(2.57e-05)]_\ 16 chrVIII:504208-505647 4.83e-02 10_[+3(6.26e-05)]_70 chrIV:322184-323616 5.66e-01 100 chrXII:374188-374725 8.43e-01 100 chrVII:951321-951739 1.51e-01 100 chrXIII:146451-147761 4.27e-01 100 chrVI:82203-84446 8.62e-01 100 chrII:477114-477776 3.76e-01 100 chrIV:1461478-1461831 2.93e-01 100 chrXII:348053-348785 8.16e-01 100 chrXII:919277-923778 3.13e-01 100 chrVIII:54102-54714 2.36e-01 100 chrII:312438-312942 8.65e-01 100 chrXIV:662938-664995 2.74e-01 100 chrX:90751-90851 7.92e-01 100 chrIV:411056-411612 5.23e-01 100 chrXI:282801-284993 2.05e-01 100 chrXIII:837729-838225 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chrV:249782-250540 1.00e-02 38_[+1(3.41e-05)]_32 chrXII:36927-37439 9.34e-01 100 chrIV:519664-520189 7.81e-01 100 chrXV:234192-234767 8.57e-01 100 chrXIII:572647-573163 1.28e-16 27_[+1(5.95e-11)]_5_[-2(2.05e-10)]_\ 9 chrVII:115340-115725 2.16e-12 14_[+2(6.84e-12)]_57 chrII:680267-682440 7.94e-01 100 chrXVI:559900-560266 6.23e-01 100 chrII:226987-227352 1.21e-05 7_[-1(5.52e-09)]_63 chrXV:216329-216653 6.40e-01 100 chrXIV:86875-89965 2.78e-01 100 chrVII:779383-779921 2.43e-08 19_[+3(9.93e-05)]_16_[-1(1.43e-10)]_\ 15 chrXII:201593-202727 9.03e-02 100 chrX:606050-606150 9.38e-01 100 chrIII:29036-29388 6.06e-01 100 chrIV:1256812-1257301 1.30e-12 1_[+1(1.30e-13)]_16_[-3(6.75e-06)]_\ 33 chrIV:220950-222309 4.80e-01 100 chrV:192320-192623 5.11e-01 100 chrIV:83446-83859 9.99e-01 100 chrXIII:221517-223886 9.29e-01 100 chrVII:700357-701280 3.50e-01 100 chrVII:364103-364464 6.42e-01 100 chrXIII:267664-268336 3.03e-01 100 chrXI:158305-159742 2.86e-01 100 chrXIV:102597-103231 2.48e-01 100 chrIV:980754-981167 9.97e-06 63_[+1(5.52e-09)]_7 chrIV:1305359-1305870 4.18e-05 71_[+3(1.22e-08)]_9 chrXI:551631-552727 1.13e-01 100 chrXII:498554-499853 5.76e-01 100 chrV:151778-152550 3.55e-01 100 chrXII:534189-535736 7.22e-01 100 chrXII:734592-734982 7.06e-06 70_[+3(1.18e-09)]_10 chrI:166175-166611 9.52e-01 100 chrIV:229807-230844 1.46e-01 49_[+2(8.55e-05)]_22 chrIV:748685-751401 5.34e-01 100 chrXV:435537-437078 2.33e-01 100 chrXII:459598-460750 3.93e-01 100 chrVIII:145831-146500 8.88e-01 100 chrXII:47452-49169 7.22e-01 100 chrIX:316004-318488 1.47e-01 100 chrII:168368-169628 5.57e-01 100 chrIV:1384210-1385329 2.41e-01 100 chrX:194896-194996 7.13e-01 100 chrV:288184-288749 8.46e-13 26_[+1(1.80e-08)]_14_[-2(7.86e-12)]_\ 1 chrVII:647955-648506 5.54e-01 100 chrIV:1201556-1202002 1.73e-16 29_[+2(6.67e-13)]_5_[-1(2.05e-10)]_\ 7 chrI:138978-139378 1.74e-05 29_[+3(2.53e-08)]_51 chrV:363625-364450 3.39e-01 100 chrXVI:370979-373286 9.88e-01 100 chrVI:90530-91079 8.79e-02 100 chrXII:440420-441660 8.41e-01 100 chrXVI:377882-378458 7.64e-01 100 chrXIV:568061-568623 1.00e+00 100 chrVIII:488331-488619 8.69e-01 100 chrVII:857090-857811 8.65e-06 65_[-3(1.49e-08)]_15 chrVI:101185-101563 1.74e-05 57_[+3(2.53e-08)]_23 chrVII:650972-651365 6.87e-01 100 chrX:569663-569763 2.54e-01 100 chrXV:287796-288448 3.34e-01 100 chrVII:319223-320136 8.82e-02 100 chrII:644951-645421 3.56e-01 100 chrVIII:34389-36133 1.76e-01 100 chrVII:561442-561710 6.60e-01 100 chrXIV:302590-303786 5.56e-01 100 chrXV:978746-979229 4.39e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************