******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--INO80/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71790-73730 1.0000 100 chrI:81906-82286 1.0000 100 chrI:138883-139346 1.0000 100 chrI:142145-143712 1.0000 100 chrI:151599-151858 1.0000 100 chrI:166175-167093 1.0000 100 chrI:180957-181531 1.0000 100 chrI:182164-183217 1.0000 100 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chrXV:161108-161781 1.0000 100 chrXV:167976-168488 1.0000 100 chrXV:216271-216830 1.0000 100 chrXV:226440-226896 1.0000 100 chrXV:228041-228719 1.0000 100 chrXV:252799-254709 1.0000 100 chrXV:274498-275018 1.0000 100 chrXV:281961-282594 1.0000 100 chrXV:287335-288440 1.0000 100 chrXV:300847-301780 1.0000 100 chrXV:338872-340617 1.0000 100 chrXV:353673-354302 1.0000 100 chrXV:438476-439395 1.0000 100 chrXV:444614-446336 1.0000 100 chrXV:464266-464803 1.0000 100 chrXV:487454-487759 1.0000 100 chrXV:504990-505482 1.0000 100 chrXV:505693-507122 1.0000 100 chrXV:571416-572339 1.0000 100 chrXV:594316-594647 1.0000 100 chrXV:620194-624373 1.0000 100 chrXV:663242-664243 1.0000 100 chrXV:677778-679453 1.0000 100 chrXV:710129-710652 1.0000 100 chrXV:722925-724846 1.0000 100 chrXV:758824-759555 1.0000 100 chrXV:778621-779522 1.0000 100 chrXV:779742-780994 1.0000 100 chrXV:832357-833312 1.0000 100 chrXV:842411-842941 1.0000 100 chrXV:853645-854841 1.0000 100 chrXV:866529-868121 1.0000 100 chrXV:882749-883681 1.0000 100 chrXV:896677-898427 1.0000 100 chrXV:899447-901217 1.0000 100 chrXV:925208-925409 1.0000 100 chrXV:968162-968544 1.0000 100 chrXV:976275-976870 1.0000 100 chrXV:977083-978380 1.0000 100 chrXV:978829-979121 1.0000 100 chrXV:979736-981221 1.0000 100 chrXV:1003920-1004990 1.0000 100 chrXV:1025715-1026219 1.0000 100 chrXV:1027795-1029431 1.0000 100 chrXVI:55597-56423 1.0000 100 chrXVI:75488-76796 1.0000 100 chrXVI:109037-110950 1.0000 100 chrXVI:111125-113832 1.0000 100 chrXVI:134120-135872 1.0000 100 chrXVI:172913-174114 1.0000 100 chrXVI:188623-189289 1.0000 100 chrXVI:208034-210573 1.0000 100 chrXVI:280560-281872 1.0000 100 chrXVI:282067-283232 1.0000 100 chrXVI:302571-304490 1.0000 100 chrXVI:338198-338406 1.0000 100 chrXVI:338638-339353 1.0000 100 chrXVI:370942-373359 1.0000 100 chrXVI:378661-379009 1.0000 100 chrXVI:404441-407919 1.0000 100 chrXVI:432505-434393 1.0000 100 chrXVI:435628-436190 1.0000 100 chrXVI:451255-453133 1.0000 100 chrXVI:520008-520510 1.0000 100 chrXVI:559904-560286 1.0000 100 chrXVI:572030-572784 1.0000 100 chrXVI:581851-582258 1.0000 100 chrXVI:622056-623099 1.0000 100 chrXVI:641959-643374 1.0000 100 chrXVI:654100-655061 1.0000 100 chrXVI:689347-690767 1.0000 100 chrXVI:699794-700651 1.0000 100 chrXVI:701850-702343 1.0000 100 chrXVI:718413-719672 1.0000 100 chrXVI:731577-732281 1.0000 100 chrXVI:744065-744650 1.0000 100 chrXVI:768287-769471 1.0000 100 chrXVI:775639-776173 1.0000 100 chrXVI:794257-796212 1.0000 100 chrXVI:810587-811144 1.0000 100 chrXVI:819338-820035 1.0000 100 chrXVI:821635-822172 1.0000 100 chrXVI:856716-857154 1.0000 100 chrXVI:860127-861113 1.0000 100 chrXVI:879146-880557 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--INO80/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--INO80/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--INO80/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.306 C 0.194 G 0.194 T 0.306 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--INO80/background): A 0.311 C 0.189 G 0.189 T 0.311 ******************************************************************************** ******************************************************************************** MOTIF AGRTCCBSGGTTCGATYCCSVGHBGGVSCR MEME-1 width = 30 sites = 64 llr = 1284 E-value = 9.4e-252 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSVGHBGGVSCR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 7142:2:12::::2a2::1:3122214125 pos.-specific C 11:17643::::a::24a754142212371 probability G 276::1357a:::8:1:::446:44635:3 matrix T :::7213:1:aa:::56:2::3422111:2 bits 2.4 * * 2.2 * * * 1.9 * * * 1.7 **** * * Relative 1.4 ****** * Entropy 1.2 ** * ****** * * (28.9 bits) 1.0 ** * ******** **** * 0.7 *** * ******** ***** * * 0.5 *************** ******* * ** 0.2 *************** ************** 0.0 ------------------------------ Multilevel AGGTCCCGGGTTCGATTCCCGGCGGGAGCA consensus AATAGCA A AC TGCTTTT GCAG sequence T A AC C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSVGHBGGVSCR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIV:631516-632134 - 71 3.89e-14 . AGGTCCCGGGTTCGAGTCCCGGCTCGCCCC CATTGATTTA chrIII:123332-123849 - 37 3.89e-14 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCGGCTCGCCCC ACATTGTTTT chrX:531582-532236 + 10 2.26e-13 GCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGCA GTTTCTTTTC chrIV:83433-83834 + 6 2.26e-13 TCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGCA AGTTTAATTT chrXII:214675-215062 - 65 5.41e-12 AGGAAG AGGTCATCGGTTCGATTCCGGTTGCGTCCA TTTATTTTTT chrXII:1051940-1052201 - 51 8.13e-12 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACCA TTATTTTTTT chrV:550937-551724 - 5 8.13e-12 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACCA TTTT chrII:197265-197826 + 43 8.13e-12 AATAACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACCA TTTTTTTGCA chrIV:488434-489167 - 47 9.29e-12 TACACGGCGA AGATCCCGAGTTCGAACCTCGGTTGGATCA GAATCTTTTT chrII:326498-327141 - 23 9.29e-12 TACACGGCGA AGATCCCGAGTTCGAACCTCGGTTGGATCA AACTCTTTAT chrXV:464266-464803 + 38 2.02e-11 AGCATGCGAG AGGCCCTGGGTTCAATTCCCAGCTCGCCCC TTTTATTTTT chrXIII:195924-196297 - 8 2.02e-11 AGCATGCGAG AGGCCCTGGGTTCAATTCCCAGCTCGCCCC TTTTTTT chrVIII:133960-134772 + 47 2.02e-11 TTTGATCCGG ACAACCCCGGTTCGAATCCGGGTAGGACCT TTTTTTGCTA chrIV:802531-803015 - 8 2.02e-11 TTTGATCCGG ACAACCCCGGTTCGAATCCGGGTAGGACCT CTTTTTA chrIV:645029-645372 - 3 2.02e-11 TTTGATCCGG ACAACCCCGGTTCGAATCCGGGTAGGACCT TT chrIII:168019-168551 - 66 2.02e-11 TCCGG ACAACCCCGGTTCGAATCCGGGTAGGACCT TTTTTTGAAT chrX:414811-415290 + 9 2.29e-11 TAATCATA AGGTTAGGGGTTCGAGCCCCCTACAGGGCT AATATTTTTT chrV:435587-436008 - 5 2.29e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCTACAGGGCT TTCT chrIV:1201526-1202083 + 39 2.29e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCTACAGGGCT AATAACACAT chrIII:150933-151601 - 67 2.29e-11 CATA AGGTTAGGGGTTCGAGCCCCCTACAGGGCT TTCTTTTTTC chrXVI:856716-857154 + 60 7.64e-11 AGCATGGGAG AGGTCTCCGGTTCGATTCCGGACTCGTCCA TTTTAATTTT chrXIII:321007-321313 - 37 7.64e-11 AGCATGGGAG AGGTCTCCGGTTCGATTCCGGACTCGTCCA TTTTTTATTT chrVII:774150-774694 + 20 7.64e-11 AGCATGGGAG AGGTCTCCGGTTCGATTCCGGACTCGTCCA AATTTTTTTA chrIV:410164-410778 + 1 7.64e-11 . AGGTCTCCGGTTCGATTCCGGACTCGTCCA AATTATTTTT chrV:130792-131438 - 17 9.60e-11 TTTGATCCGA ACAACCCCGGTTCGAATCCGGGTAAGACCT ATTTTTTTCC chrIV:1016955-1017501 - 29 1.08e-10 TCTCACCGTG GAGACCGGGGTTCGACTCCCCGCTTCGGAG TTTCTTTTTT chrXIII:586381-586921 - 35 1.50e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATCA TTTTTTTGAA chrXIII:420288-420887 - 51 1.50e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATCA TTTTTATCTC chrVII:823344-823724 + 42 1.50e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATCA TTTTTTGAAG chrV:438496-439085 + 4 1.50e-10 AGA ACGTCCCCAGTTCGATCCTGGGCGAAATCA ATTTTTTTTT chrXIV:95980-96500 - 51 1.68e-10 TTCCAAGGTG GGGACACGGGTTCGATTCTCGTACCGCTCA AATTTTTTGA chrXIII:572276-573502 - 44 1.68e-10 CATAATCTGA AGGTCGAGAGTTCGAACCTCCCCTGGAGCA CATTTTTTTT chrX:390793-391310 - 42 1.68e-10 CATAATCTGA AGGTCGAGAGTTCGAACCTCCCCTGGAGCA TATTTTTATA chrVIII:115830-116424 - 30 2.32e-10 AGTAATGTGG AGATCATCGGTTCAAATCCGATTGGAAGCA TTTTTTGCAT chrIX:174668-175539 + 21 2.32e-10 AGTAATGTGG AGATCATCGGTTCAAATCCGATTGGAAGCA ATTTTTTTCT chrII:266187-266691 + 32 2.32e-10 AGTAATGTGG AGATCATCGGTTCAAATCCGATTGGAAGCA TTTTTTTGAA chrXI:140591-141456 - 45 3.18e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGAG TTTTCATTAT chrX:538342-538889 + 32 3.18e-10 CCTAAGGAGA AGACTGCGGGTTCGAGTCCCGTACGGAACG TTGATTATTT chrIX:370222-370722 + 37 3.18e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGAG TATGTTTATT chrII:644961-645488 + 35 3.18e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGAG TTATTTTTTG chrXIII:131536-132084 - 65 3.92e-10 ATCAGA AGATTATGGGTTCGACCCCCATCGTGAGTG CTTTGTTTCT chrX:374180-374876 - 28 3.92e-10 TCTAATCAGA AGATTATGGGTTCGACCCCCATCGTGAGTG CTTTGTTTCT chrIV:568506-569350 + 46 3.92e-10 TCTAATCAGA AGATTATGGGTTCGACCCCCATCGTGAGTG CTTTGTTTCT chrIV:1095097-1095676 - 34 7.15e-10 AGATATCTGG AGGTCCTGTGTTCGATCCACAGAGTTCGCA TTTTTATTTT chrX:233665-234279 + 60 1.16e-09 ACGAACCAGG AGATTCCAGGTTCGAGTCCTGGCGGGGAAG AATATTCTTT chrXV:228041-228719 + 45 1.27e-09 GTTAATCGCA AGATCGTGAGTTCAACCCTCACTGGGGTCG TTATTTTTGA chrVII:730943-731465 + 27 1.27e-09 GTTAATCGCA AGATCGTGAGTTCAACCCTCACTGGGGTCG TTTTTTGCTT chrXIII:463295-463917 + 40 1.84e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGAG ATTTTTTTAT chrX:355179-355877 + 20 1.84e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGAG ATTTTTTTTG chrX:204542-205077 + 18 1.84e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGAG ATTTTTTTTG chrVII:544205-544921 - 64 1.84e-09 CGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGAG ATTTTTTTCT chrIX:336097-336632 - 35 1.84e-09 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGAG ATTTTTTTAC chrXVI:622056-623099 - 13 2.41e-09 AGTTATCTGG AGGTCCTGTGTTCGATCCACAGAATTCGCA TTTATTTTTT chrXVI:435628-436190 - 34 2.41e-09 GCAAATCTGT TGGTCCTTAGTTCGATCCTGAGTGCGAGCT TTCTTTTTTT chrVIII:358248-358754 - 27 2.41e-09 AGTTATCTGG AGGTCCTGTGTTCGATCCACAGAATTCGCA TATTTTTTTA chrVII:440358-441149 - 13 2.41e-09 AGTTATCTGG AGGTCCTGTGTTCGATCCACAGAATTCGCA TAATAAGCCA chrII:642790-643249 - 38 2.41e-09 GCAAATCTGT TGGTCCTTAGTTCGATCCTGAGTGCGAGCT TCTTTTTTTT chrXIII:837700-838241 + 67 5.20e-09 CGAAATCTTG AGATCGGGCGTTCGACTCGCCCCCGGGAGA TATT chrVI:167245-167729 + 59 5.20e-09 CGAAATCTTG AGATCGGGCGTTCGACTCGCCCCCGGGAGA TATTTTTTTA chrV:492195-492555 - 27 5.20e-09 ACGAACCAGA AGATTCCAGGTTCAAGTCCTGGCGGGGAAG GATTATTTTT chrIV:946160-946643 + 20 5.20e-09 CGAAATCTTG AGATCGGGCGTTCGACTCGCCCCCGGGAGA TTTTTTTATG chrXVI:744065-744650 + 19 1.68e-08 TGTAATGCAA AGGTCGTTAGTTCAATTCTGACAGGTGGCA AAATTTTTTC chrII:347386-348013 - 4 1.34e-07 TATTACTGAA GGATGCGAGGTTCGAACTCGCGCGGACAAC CGT chrII:9394-9894 - 39 1.34e-07 AAATACTGAA GGATGCGAGGTTCGAACTCGCGCGGACAAC CGTCCAACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSVGHBGGVSCR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631516-632134 3.9e-14 70_[-1] chrIII:123332-123849 3.9e-14 36_[-1]_34 chrX:531582-532236 2.3e-13 9_[+1]_61 chrIV:83433-83834 2.3e-13 5_[+1]_65 chrXII:214675-215062 5.4e-12 64_[-1]_6 chrXII:1051940-1052201 8.1e-12 50_[-1]_20 chrV:550937-551724 8.1e-12 4_[-1]_66 chrII:197265-197826 8.1e-12 42_[+1]_28 chrIV:488434-489167 9.3e-12 46_[-1]_24 chrII:326498-327141 9.3e-12 22_[-1]_48 chrXV:464266-464803 2e-11 37_[+1]_33 chrXIII:195924-196297 2e-11 7_[-1]_63 chrVIII:133960-134772 2e-11 46_[+1]_24 chrIV:802531-803015 2e-11 7_[-1]_63 chrIV:645029-645372 2e-11 2_[-1]_68 chrIII:168019-168551 2e-11 65_[-1]_5 chrX:414811-415290 2.3e-11 8_[+1]_62 chrV:435587-436008 2.3e-11 4_[-1]_66 chrIV:1201526-1202083 2.3e-11 38_[+1]_32 chrIII:150933-151601 2.3e-11 66_[-1]_4 chrXVI:856716-857154 7.6e-11 59_[+1]_11 chrXIII:321007-321313 7.6e-11 36_[-1]_34 chrVII:774150-774694 7.6e-11 19_[+1]_51 chrIV:410164-410778 7.6e-11 [+1]_70 chrV:130792-131438 9.6e-11 16_[-1]_54 chrIV:1016955-1017501 1.1e-10 28_[-1]_42 chrXIII:586381-586921 1.5e-10 34_[-1]_36 chrXIII:420288-420887 1.5e-10 50_[-1]_20 chrVII:823344-823724 1.5e-10 41_[+1]_29 chrV:438496-439085 1.5e-10 3_[+1]_67 chrXIV:95980-96500 1.7e-10 50_[-1]_20 chrXIII:572276-573502 1.7e-10 43_[-1]_27 chrX:390793-391310 1.7e-10 41_[-1]_29 chrVIII:115830-116424 2.3e-10 29_[-1]_41 chrIX:174668-175539 2.3e-10 20_[+1]_50 chrII:266187-266691 2.3e-10 31_[+1]_39 chrXI:140591-141456 3.2e-10 44_[-1]_26 chrX:538342-538889 3.2e-10 31_[+1]_39 chrIX:370222-370722 3.2e-10 36_[+1]_34 chrII:644961-645488 3.2e-10 34_[+1]_36 chrXIII:131536-132084 3.9e-10 64_[-1]_6 chrX:374180-374876 3.9e-10 27_[-1]_43 chrIV:568506-569350 3.9e-10 45_[+1]_25 chrIV:1095097-1095676 7.2e-10 33_[-1]_37 chrX:233665-234279 1.2e-09 59_[+1]_11 chrXV:228041-228719 1.3e-09 44_[+1]_26 chrVII:730943-731465 1.3e-09 26_[+1]_44 chrXIII:463295-463917 1.8e-09 39_[+1]_31 chrX:355179-355877 1.8e-09 19_[+1]_51 chrX:204542-205077 1.8e-09 17_[+1]_53 chrVII:544205-544921 1.8e-09 63_[-1]_7 chrIX:336097-336632 1.8e-09 34_[-1]_36 chrXVI:622056-623099 2.4e-09 12_[-1]_58 chrXVI:435628-436190 2.4e-09 33_[-1]_37 chrVIII:358248-358754 2.4e-09 26_[-1]_44 chrVII:440358-441149 2.4e-09 12_[-1]_58 chrII:642790-643249 2.4e-09 37_[-1]_33 chrXIII:837700-838241 5.2e-09 66_[+1]_4 chrVI:167245-167729 5.2e-09 58_[+1]_12 chrV:492195-492555 5.2e-09 26_[-1]_44 chrIV:946160-946643 5.2e-09 19_[+1]_51 chrXVI:744065-744650 1.7e-08 18_[+1]_52 chrII:347386-348013 1.3e-07 3_[-1]_67 chrII:9394-9894 1.3e-07 38_[-1]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSVGHBGGVSCR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGRTCCBSGGTTCGATYCCSVGHBGGVSCR width=30 seqs=64 chrXIV:631516-632134 ( 71) AGGTCCCGGGTTCGAGTCCCGGCTCGCCCC 1 chrIII:123332-123849 ( 37) AGGTCCCGGGTTCGAGTCCCGGCTCGCCCC 1 chrX:531582-532236 ( 10) GGGCCCCCGGTTCGATTCCGGGCTTGCGCA 1 chrIV:83433-83834 ( 6) GGGCCCCCGGTTCGATTCCGGGCTTGCGCA 1 chrXII:214675-215062 ( 65) AGGTCATCGGTTCGATTCCGGTTGCGTCCA 1 chrXII:1051940-1052201 ( 51) GGATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrV:550937-551724 ( 5) GGATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrII:197265-197826 ( 43) GGATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrIV:488434-489167 ( 47) AGATCCCGAGTTCGAACCTCGGTTGGATCA 1 chrII:326498-327141 ( 23) AGATCCCGAGTTCGAACCTCGGTTGGATCA 1 chrXV:464266-464803 ( 38) AGGCCCTGGGTTCAATTCCCAGCTCGCCCC 1 chrXIII:195924-196297 ( 8) AGGCCCTGGGTTCAATTCCCAGCTCGCCCC 1 chrVIII:133960-134772 ( 47) ACAACCCCGGTTCGAATCCGGGTAGGACCT 1 chrIV:802531-803015 ( 8) ACAACCCCGGTTCGAATCCGGGTAGGACCT 1 chrIV:645029-645372 ( 3) ACAACCCCGGTTCGAATCCGGGTAGGACCT 1 chrIII:168019-168551 ( 66) ACAACCCCGGTTCGAATCCGGGTAGGACCT 1 chrX:414811-415290 ( 9) AGGTTAGGGGTTCGAGCCCCCTACAGGGCT 1 chrV:435587-436008 ( 5) AGGTTAGGGGTTCGAGCCCCCTACAGGGCT 1 chrIV:1201526-1202083 ( 39) AGGTTAGGGGTTCGAGCCCCCTACAGGGCT 1 chrIII:150933-151601 ( 67) AGGTTAGGGGTTCGAGCCCCCTACAGGGCT 1 chrXVI:856716-857154 ( 60) AGGTCTCCGGTTCGATTCCGGACTCGTCCA 1 chrXIII:321007-321313 ( 37) AGGTCTCCGGTTCGATTCCGGACTCGTCCA 1 chrVII:774150-774694 ( 20) AGGTCTCCGGTTCGATTCCGGACTCGTCCA 1 chrIV:410164-410778 ( 1) AGGTCTCCGGTTCGATTCCGGACTCGTCCA 1 chrV:130792-131438 ( 17) ACAACCCCGGTTCGAATCCGGGTAAGACCT 1 chrIV:1016955-1017501 ( 29) GAGACCGGGGTTCGACTCCCCGCTTCGGAG 1 chrXIII:586381-586921 ( 35) ACGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrXIII:420288-420887 ( 51) ACGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrVII:823344-823724 ( 42) ACGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrV:438496-439085 ( 4) ACGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrXIV:95980-96500 ( 51) GGGACACGGGTTCGATTCTCGTACCGCTCA 1 chrXIII:572276-573502 ( 44) AGGTCGAGAGTTCGAACCTCCCCTGGAGCA 1 chrX:390793-391310 ( 42) AGGTCGAGAGTTCGAACCTCCCCTGGAGCA 1 chrVIII:115830-116424 ( 30) AGATCATCGGTTCAAATCCGATTGGAAGCA 1 chrIX:174668-175539 ( 21) AGATCATCGGTTCAAATCCGATTGGAAGCA 1 chrII:266187-266691 ( 32) AGATCATCGGTTCAAATCCGATTGGAAGCA 1 chrXI:140591-141456 ( 45) GAGACCGGGGTTCGACTCCCCGTATCGGAG 1 chrX:538342-538889 ( 32) AGACTGCGGGTTCGAGTCCCGTACGGAACG 1 chrIX:370222-370722 ( 37) GAGACCGGGGTTCGACTCCCCGTATCGGAG 1 chrII:644961-645488 ( 35) GAGACCGGGGTTCGACTCCCCGTATCGGAG 1 chrXIII:131536-132084 ( 65) AGATTATGGGTTCGACCCCCATCGTGAGTG 1 chrX:374180-374876 ( 28) AGATTATGGGTTCGACCCCCATCGTGAGTG 1 chrIV:568506-569350 ( 46) AGATTATGGGTTCGACCCCCATCGTGAGTG 1 chrIV:1095097-1095676 ( 34) AGGTCCTGTGTTCGATCCACAGAGTTCGCA 1 chrX:233665-234279 ( 60) AGATTCCAGGTTCGAGTCCTGGCGGGGAAG 1 chrXV:228041-228719 ( 45) AGATCGTGAGTTCAACCCTCACTGGGGTCG 1 chrVII:730943-731465 ( 27) AGATCGTGAGTTCAACCCTCACTGGGGTCG 1 chrXIII:463295-463917 ( 40) CAGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrX:355179-355877 ( 20) CAGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrX:204542-205077 ( 18) CAGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrVII:544205-544921 ( 64) CAGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrIX:336097-336632 ( 35) CAGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrXVI:622056-623099 ( 13) AGGTCCTGTGTTCGATCCACAGAATTCGCA 1 chrXVI:435628-436190 ( 34) TGGTCCTTAGTTCGATCCTGAGTGCGAGCT 1 chrVIII:358248-358754 ( 27) AGGTCCTGTGTTCGATCCACAGAATTCGCA 1 chrVII:440358-441149 ( 13) AGGTCCTGTGTTCGATCCACAGAATTCGCA 1 chrII:642790-643249 ( 38) TGGTCCTTAGTTCGATCCTGAGTGCGAGCT 1 chrXIII:837700-838241 ( 67) AGATCGGGCGTTCGACTCGCCCCCGGGAGA 1 chrVI:167245-167729 ( 59) AGATCGGGCGTTCGACTCGCCCCCGGGAGA 1 chrV:492195-492555 ( 27) AGATTCCAGGTTCAAGTCCTGGCGGGGAAG 1 chrIV:946160-946643 ( 20) AGATCGGGCGTTCGACTCGCCCCCGGGAGA 1 chrXVI:744065-744650 ( 19) AGGTCGTTAGTTCAATTCTGACAGGTGGCA 1 chrII:347386-348013 ( 4) GGATGCGAGGTTCGAACTCGCGCGGACAAC 1 chrII:9394-9894 ( 39) GGATGCGAGGTTCGAACTCGCGCGGACAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSVGHBGGVSCR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 11.1149 E= 9.4e-252 118 -128 -1 -331 -114 -43 192 -1264 39 -1264 165 -1264 -41 -128 -1264 115 -1264 195 -260 -41 -41 157 -43 -231 -331 92 79 -14 -231 86 153 -273 -61 -201 186 -231 -1264 -1264 240 -1264 -1264 -1264 -1264 169 -1264 -1264 -1264 169 -1264 240 -1264 -1264 -51 -1264 204 -1264 169 -1264 -1264 -1264 -51 -1 -43 54 -1264 121 -1264 86 -1264 235 -1264 -331 -231 183 -201 -51 -1264 153 116 -331 -23 92 99 -1264 -231 -60 157 -31 -51 116 -1264 21 -85 21 99 -41 -73 -1 116 -61 -114 -43 176 -199 33 10 79 -199 -131 49 131 -114 -61 189 -201 -273 59 -101 49 -85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSVGHBGGVSCR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 64 E= 9.4e-252 0.703125 0.078125 0.187500 0.031250 0.140625 0.140625 0.718750 0.000000 0.406250 0.000000 0.593750 0.000000 0.234375 0.078125 0.000000 0.687500 0.000000 0.734375 0.031250 0.234375 0.234375 0.562500 0.140625 0.062500 0.031250 0.359375 0.328125 0.281250 0.062500 0.343750 0.546875 0.046875 0.203125 0.046875 0.687500 0.062500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.218750 0.000000 0.781250 0.000000 1.000000 0.000000 0.000000 0.000000 0.218750 0.187500 0.140625 0.453125 0.000000 0.437500 0.000000 0.562500 0.000000 0.968750 0.000000 0.031250 0.062500 0.671875 0.046875 0.218750 0.000000 0.546875 0.421875 0.031250 0.265625 0.359375 0.375000 0.000000 0.062500 0.125000 0.562500 0.250000 0.218750 0.421875 0.000000 0.359375 0.171875 0.218750 0.375000 0.234375 0.187500 0.187500 0.421875 0.203125 0.140625 0.140625 0.640625 0.078125 0.390625 0.203125 0.328125 0.078125 0.125000 0.265625 0.468750 0.140625 0.203125 0.703125 0.046875 0.046875 0.468750 0.093750 0.265625 0.171875 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSVGHBGGVSCR MEME-1 regular expression -------------------------------------------------------------------------------- AG[GA][TA][CT][CA][CGT][GC][GA]GTTC[GA]A[TA][TC]C[CT][CG][GCA][GT][CTA][GTC][GT]G[AGC][GC][CA][AG] -------------------------------------------------------------------------------- Time 353.35 secs. ******************************************************************************** ******************************************************************************** MOTIF SSCTYWAMCMACTSGGCCAAV MEME-2 width = 21 sites = 35 llr = 626 E-value = 1.0e-088 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCTYWAMCMACTSGGCCAAV MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::11573:59::111::a62 pos.-specific C 65923:17a3:8:32:a8:33 probability G 45:21:2::21::479::::4 matrix T ::1655:::::2a2:::2:1: bits 2.4 * * 2.2 * ** 1.9 * ** 1.7 * * ** ** * Relative 1.4 *** * *** **** Entropy 1.2 *** ** *** ***** (25.8 bits) 1.0 *** ** *** ***** 0.7 *** **** *** ***** * 0.5 **** **************** 0.2 ********************* 0.0 --------------------- Multilevel CCCTTAACCAACTGGGCCAAG consensus GG CTGA C C T CC sequence G T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCMACTSGGCCAAV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:602091-602568 - 38 8.89e-13 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCATTGT chrXII:734632-734981 - 51 8.89e-13 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCAAACT chrV:550937-551724 + 53 8.89e-13 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCTGTAA chrII:197265-197826 - 4 8.89e-13 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGA chrXII:962784-963340 + 18 1.28e-10 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCGTCGA chrX:424266-424725 + 45 1.28e-10 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCATCTT chrXIII:258857-259517 + 77 1.49e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTG chrXII:167754-168293 + 27 1.49e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCATATG chrX:523747-524477 + 6 1.49e-10 TCTTT CGCCTTAACCACTCGGCCAAG TTGCCTTTAA chrXII:592237-593011 + 20 2.00e-10 TAAATCTGAC GCCTTAAACCACTCGGCCAAA CTCCCATTGT chrXV:228041-228719 - 6 3.49e-10 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTC chrIII:127581-127872 - 45 3.49e-10 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCATTTT chrXV:853645-854841 + 41 1.85e-09 GCAAGGGAAG CGCGCTACCAACTGCGCCATG TGCCCTGATG chrVII:115325-115721 - 20 2.53e-09 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrVIII:115830-116424 + 77 3.42e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAA chrXVI:581851-582258 - 63 4.55e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTCTTT chrV:435587-436008 + 52 4.55e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTCTTA chrIX:299969-300643 + 19 4.55e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTATTT chrIV:1201526-1202083 - 1 4.55e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAAC chrXI:458005-459185 - 17 5.48e-09 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrVII:205274-205803 - 38 5.48e-09 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrVII:700154-701248 - 29 7.18e-09 TCGACCTGAC GCCTTAGACCACTCGGCCAGA GTACCAATTC chrXIV:374621-375115 - 56 9.30e-09 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAG TCCGCTTATT chrXI:83974-84443 - 55 1.01e-08 TAAGTCTGCC GCATTAGACCACTCGGCCAAC CCTCCATACA chrXVI:856716-857154 - 22 1.40e-08 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCGAATC chrX:233665-234279 - 22 1.77e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCACG AGGAACAAGA chrV:492195-492555 + 74 1.77e-08 CGTAGCCAGA CGCCGTGACCATTGGGCCACG AGGAAT chrXVI:622056-623099 + 79 2.22e-08 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA T chrVII:440358-441149 + 79 2.22e-08 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA T chrXIII:837700-838241 - 13 2.56e-08 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTCAAT chrX:353997-354481 - 60 2.56e-08 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTGATA chrVI:210457-210930 + 39 2.56e-08 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTCGTT chrVI:167245-167729 - 5 2.56e-08 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGA chrX:378202-378561 - 34 5.71e-08 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCTATTA chrVII:823344-823724 - 3 5.71e-08 TTAAGCAGAT GCCATAACCGACTAGACCACG AA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCMACTSGGCCAAV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:602091-602568 8.9e-13 37_[-2]_42 chrXII:734632-734981 8.9e-13 50_[-2]_29 chrV:550937-551724 8.9e-13 52_[+2]_27 chrII:197265-197826 8.9e-13 3_[-2]_76 chrXII:962784-963340 1.3e-10 17_[+2]_62 chrX:424266-424725 1.3e-10 44_[+2]_35 chrXIII:258857-259517 1.5e-10 76_[+2]_3 chrXII:167754-168293 1.5e-10 26_[+2]_53 chrX:523747-524477 1.5e-10 5_[+2]_74 chrXII:592237-593011 2e-10 19_[+2]_60 chrXV:228041-228719 3.5e-10 5_[-2]_74 chrIII:127581-127872 3.5e-10 44_[-2]_35 chrXV:853645-854841 1.8e-09 40_[+2]_39 chrVII:115325-115721 2.5e-09 19_[-2]_60 chrVIII:115830-116424 3.4e-09 76_[+2]_3 chrXVI:581851-582258 4.5e-09 62_[-2]_17 chrV:435587-436008 4.5e-09 51_[+2]_28 chrIX:299969-300643 4.5e-09 18_[+2]_61 chrIV:1201526-1202083 4.5e-09 [-2]_79 chrXI:458005-459185 5.5e-09 16_[-2]_63 chrVII:205274-205803 5.5e-09 37_[-2]_42 chrVII:700154-701248 7.2e-09 28_[-2]_51 chrXIV:374621-375115 9.3e-09 55_[-2]_24 chrXI:83974-84443 1e-08 54_[-2]_25 chrXVI:856716-857154 1.4e-08 21_[-2]_58 chrX:233665-234279 1.8e-08 21_[-2]_58 chrV:492195-492555 1.8e-08 73_[+2]_6 chrXVI:622056-623099 2.2e-08 78_[+2]_1 chrVII:440358-441149 2.2e-08 78_[+2]_1 chrXIII:837700-838241 2.6e-08 12_[-2]_67 chrX:353997-354481 2.6e-08 59_[-2]_20 chrVI:210457-210930 2.6e-08 38_[+2]_41 chrVI:167245-167729 2.6e-08 4_[-2]_75 chrX:378202-378561 5.7e-08 33_[-2]_46 chrVII:823344-823724 5.7e-08 2_[-2]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCMACTSGGCCAAV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCTYWAMCMACTSGGCCAAV width=21 seqs=35 chrXIV:602091-602568 ( 38) GCCTTAACCAACTGGGCCAAG 1 chrXII:734632-734981 ( 51) GCCTTAACCAACTGGGCCAAG 1 chrV:550937-551724 ( 53) GCCTTAACCAACTGGGCCAAG 1 chrII:197265-197826 ( 4) GCCTTAACCAACTGGGCCAAG 1 chrXII:962784-963340 ( 18) GCCTTAGACCACTCGGCCAAC 1 chrX:424266-424725 ( 45) GCCTTAGACCACTCGGCCAAC 1 chrXIII:258857-259517 ( 77) CGCCTTAACCACTCGGCCAAG 1 chrXII:167754-168293 ( 27) CGCCTTAACCACTCGGCCAAG 1 chrX:523747-524477 ( 6) CGCCTTAACCACTCGGCCAAG 1 chrXII:592237-593011 ( 20) GCCTTAAACCACTCGGCCAAA 1 chrXV:228041-228719 ( 6) GCCTTAACCAACTTGGCCATG 1 chrIII:127581-127872 ( 45) GCCTTAACCAACTTGGCCATG 1 chrXV:853645-854841 ( 41) CGCGCTACCAACTGCGCCATG 1 chrVII:115325-115721 ( 20) CGCTCTACCAACTGAGCTAAC 1 chrVIII:115830-116424 ( 77) CGCCTTACCAACTTGGCCATA 1 chrXVI:581851-582258 ( 63) CGCGCTACCGATTGCGCCAAC 1 chrV:435587-436008 ( 52) CGCGCTACCGATTGCGCCAAC 1 chrIX:299969-300643 ( 19) CGCGCTACCGATTGCGCCAAC 1 chrIV:1201526-1202083 ( 1) CGCGCTACCGATTGCGCCAAC 1 chrXI:458005-459185 ( 17) GCCTTAGACCGCTCGGCCAAA 1 chrVII:205274-205803 ( 38) GCCTTAGACCGCTCGGCCAAA 1 chrVII:700154-701248 ( 29) GCCTTAGACCACTCGGCCAGA 1 chrXIV:374621-375115 ( 56) CGCTCTCCCAACTGAGCTAAG 1 chrXI:83974-84443 ( 55) GCATTAGACCACTCGGCCAAC 1 chrXVI:856716-857154 ( 22) CGCGCTACCGACTACGCCACA 1 chrX:233665-234279 ( 22) CGCCGTGACCATTGGGCCACG 1 chrV:492195-492555 ( 74) CGCCGTGACCATTGGGCCACG 1 chrXVI:622056-623099 ( 79) CGCTCTCCCAACTGAGCTAAA 1 chrVII:440358-441149 ( 79) CGCTCTCCCAACTGAGCTAAA 1 chrXIII:837700-838241 ( 13) CCTTAAACCAACTTGGCTACC 1 chrX:353997-354481 ( 60) CCTTAAACCAACTTGGCTACC 1 chrVI:210457-210930 ( 39) CCTTAAACCAACTTGGCTACC 1 chrVI:167245-167729 ( 5) CCTTAAACCAACTTGGCTACC 1 chrX:378202-378561 ( 34) GCCATAACCGACTAGACCACG 1 chrVII:823344-823724 ( 3) GCCATAACCGACTAGACCACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCMACTSGGCCAAV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 12.1999 E= 1.0e-088 -1177 159 118 -1177 -1177 152 127 -1177 -344 218 -1177 -144 -244 -14 -14 95 -144 59 -173 81 81 -1177 -1177 56 114 -114 27 -1177 14 179 -1177 -1177 -1177 240 -1177 -1177 56 86 8 -1177 160 -1177 -173 -1177 -1177 213 -1177 -86 -1177 -1177 -1177 169 -186 59 118 -63 -144 -14 191 -1177 -244 -1177 232 -1177 -1177 240 -1177 -1177 -1177 203 -1177 -44 169 -1177 -1177 -1177 95 44 -273 -144 -44 86 118 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCMACTSGGCCAAV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 35 E= 1.0e-088 0.000000 0.571429 0.428571 0.000000 0.000000 0.542857 0.457143 0.000000 0.028571 0.857143 0.000000 0.114286 0.057143 0.171429 0.171429 0.600000 0.114286 0.285714 0.057143 0.542857 0.542857 0.000000 0.000000 0.457143 0.685714 0.085714 0.228571 0.000000 0.342857 0.657143 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.457143 0.342857 0.200000 0.000000 0.942857 0.000000 0.057143 0.000000 0.000000 0.828571 0.000000 0.171429 0.000000 0.000000 0.000000 1.000000 0.085714 0.285714 0.428571 0.200000 0.114286 0.171429 0.714286 0.000000 0.057143 0.000000 0.942857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.771429 0.000000 0.228571 1.000000 0.000000 0.000000 0.000000 0.600000 0.257143 0.028571 0.114286 0.228571 0.342857 0.428571 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWAMCMACTSGGCCAAV MEME-2 regular expression -------------------------------------------------------------------------------- [CG][CG]CT[TC][AT][AG][CA]C[ACG]ACT[GCT]GGC[CT]A[AC][GCA] -------------------------------------------------------------------------------- Time 679.53 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTYTTYTTTTTTTTHTTTTT MEME-3 width = 21 sites = 120 llr = 1212 E-value = 1.2e-067 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTYTTYTTTTTTTTHTTTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::123:2::11:1:33211: pos.-specific C 21:52132333111332222: probability G :1::::1:11:::1:1::::1 matrix T 78a567666768968366669 bits 2.4 2.2 1.9 1.7 Relative 1.4 * Entropy 1.2 * * * (14.6 bits) 1.0 * ** * * 0.7 **** * ** ** * * 0.5 ************* * ***** 0.2 *************** ***** 0.0 --------------------- Multilevel TTTTTTTTTTTTTTTTTTTTT consensus CAAC CCC CCACCC sequence C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTTYTTTTTTTTHTTTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXII:459630-459986 + 42 2.68e-11 GCAATCTTTA TTTCTTTTTTTTTTTTTTTTT TTTTTTTTTT chrIV:519659-520084 + 79 2.81e-10 CCAAGTAATG TTTTTTTTTTTTTTTTTTTTT T chrXVI:819338-820035 + 23 7.77e-10 GACTTACTAT TTTCTATTTTTTTTTTTTTTT ACATCTCAAA chrXVI:188623-189289 + 29 1.96e-09 TCTCTTTTTT TTTCTTTTTTTTTTCTTCTTT TTTCATTTGT chrIV:229474-231413 - 67 7.62e-09 TCTTCAGCAG CTTCTTCTTCTTTTTCTTCTT CAGCAGCAGC chrV:251119-251397 + 31 1.56e-08 GTAGAAGATT TTTCTTTTCTTTTCTTTTCTT CAACCCATAT chrIV:1239355-1240173 - 43 1.96e-08 TCTTCCTTAG CTTCTTCTTCCTTTTCTTCTT CAGCAGCATC chrIV:118439-119011 + 55 2.43e-08 TTATGTTTTG CTTCTTCCTTTTTTTGTTTTT TGAAACAAAG chrXVI:282067-283232 + 44 6.74e-08 TGTTTTGGGA TTTTATTCCTTTTTTTTTTTT AGTGTACGTC chrXV:677778-679453 + 31 9.82e-08 TGATACAATA TTTTATTTTCTTTTCATTTTT CAGTCATTTT chrV:85126-87246 - 41 9.82e-08 GGCGTCGGAG TTTTTTTTTCTTTTTTCATTT ATATCCCATG chrVII:806125-808230 + 40 1.18e-07 GGTTCTTCGG TTTCTTCATTTTTTTGCTTCT TGTTGGAAGA chrIV:541235-541912 - 31 1.41e-07 TCTTGCTGAT TTTCTTTTTTCTTATTCTTCT TGTGCTTCAT chrVIII:214142-214325 + 74 1.99e-07 CATGAATAGC TTTTTTTTTTTTTTTTATTCG AAATCT chrII:36238-36855 + 8 2.35e-07 TGCTAGC ATTCTTTTTTTTTTCATTTCT AGGCCTGTTT chrXII:1028173-1028543 + 28 2.78e-07 ATGTCCTACC TTTTTTCCTTCTTTCTTCCTT GTCTTAATCT chrXVI:699794-700651 + 24 3.26e-07 CTTCAAAATG TTTCTACTCCTTTTTTACTCT TCCAGATTTT chrXVI:572030-572784 + 53 4.47e-07 TTTCTTCCCA TTTCCCCTTTCTTTTCCCTTT AACATGTGGA chrXIII:807738-808543 + 63 4.47e-07 GTTGGTTTCT TTTTCTTACCTTTCTCTTTTT ATTTTTTTCT chrXVI:821635-822172 + 44 5.20e-07 TAAAATTCTG ATTCTTTTTTCTTTCATTCTT TTGTTGTTTT chrVII:544205-544921 - 42 5.20e-07 GTCGCGGAGA TTTTTTTCTTTTTCTGCTCTT CTTAGAAGAG chrVI:223926-224148 - 10 5.20e-07 TGTTTTCGAC TTTTTTTTGGTTTTTTTTTTT TAGTTCTGT chrIX:210513-211308 - 26 5.20e-07 ATGTGAGTTT TTTTAATTTTTTTTCCATTCT CATTGCAGCA chrIV:437541-438548 - 77 5.20e-07 TCC CTTCTTCTTCTTTTTGTCTTG TCCAGATGAT chrX:538342-538889 + 69 7.00e-07 ACGTTGATTA TTTTTTTTTTTTCGTTTATTT ACAGAAAAAA chrIV:83433-83834 + 43 7.00e-07 GCAAGTTTAA TTTTTTTTCTTTTTCCACATT GTTTTCCACT chrXV:663242-664243 + 10 9.32e-07 TTTTAAAAC TTTTTTTTTCATTATTTTTCT CTGTTGAATG chrXII:793451-797597 - 45 9.32e-07 ACAAGTTGTT TGTCTTCTTCTTTTTTTTGTT TAATCATATA chrXIV:104614-105549 + 12 1.07e-06 GTACTGTTCA CTTTATCTTTATTTTTTTTCT TTCGTGCAAT chrVII:736208-736897 - 44 1.07e-06 GAAGTAACTT TTTTTTTTTTTTTATAAATTT ATACATCTTT chrVI:226390-227271 + 46 1.07e-06 CGCACCATAA TTTTTTCTTTTTCCTGTCTCT TTGTCCTTTC chrXII:797879-798109 - 72 1.23e-06 GCTATCAC TTTCATCTTTCTTGCGATTTT CTTTTTTTGG chrX:614269-615612 + 35 1.23e-06 GGCCCAGTTG TTTCCTTCTTTCTTCCCCTTT GTTCACTATC chrIII:142137-142997 - 55 1.61e-06 TTATGAAAAT TTTCTACTCTCTTTCACATTT TTTTTTTCAT chrXIII:747756-748196 + 48 1.83e-06 TAGTCATATG TTTCTTTCGTCTTTTTCATCT GATGACATTC chrXI:490701-491466 + 10 1.83e-06 GGGGAAGAA TTTTTTTACTTTTATAATTTT CTTATTATCT chrXV:620194-624373 - 40 2.36e-06 ATACACCTCT TTTCTTCATTCTTTTAACTAT ACTGCGTGGG chrXII:214675-215062 - 33 2.36e-06 TTATTTTTTA CTTTTATTCTCCTTTATTTTT AACAATTTCT chrVII:1003941-1004422 - 4 2.68e-06 TATGCTACTA TTGTTTCTCCTTTCTTTTTTT CCC chrX:390793-391310 - 1 3.03e-06 CGTATATCTT TTTTCCCTCTATTTTGTTTTT chrVIII:492450-493615 - 3 3.03e-06 GGCTGAGCTT CTTCTTCTTTCTCTTCTAATT TC chrI:180957-181531 + 67 3.03e-06 ACCATTATTT TTTCTTTTTCCTCCTATACTT CATAATCTAC chrXV:281961-282594 + 32 3.41e-06 ACCACCAAAA TGTCAATTTTTTTGCCATTTT CTAAATAGTT chrXV:110870-111391 - 77 3.41e-06 TCA TTTTATCTTTCTCTTATTTTG TTTTATTTTA chrVIII:466808-467366 + 40 3.41e-06 CCGGTATTAT TTTTTTTCCCTTTGTTCTTAT TTCTCTATCA chrII:44948-45330 - 28 3.41e-06 GCTCATCGTT CTTCATTTCTTTTTCCTAATT TTGATAGAGA chrXV:1003920-1004990 + 70 3.84e-06 CCAGTCCAAT ATTTTACTTCATTTTTTTTTT CTGTTCTCGC chrXIV:568051-569080 + 49 4.32e-06 GTTTCTTGGC TTTCTTGTGTTTCTCCTTCCT TGGCCTCGTG chrXI:512993-513592 - 65 4.32e-06 GCGGAGATTT TTTATTTTGCTTTTTATTCCT CCTGTAATAT chrX:196670-197432 - 42 4.32e-06 CCCCTTCTAT TTTCCTCCTCTTCTTATCATT ACCATCTTCA chrXIV:352281-352936 + 75 4.85e-06 TAGCTCACCC TTTCCATACTTTTTCATACTT TTATA chrXIV:102569-103332 - 61 4.85e-06 TTTCAGAAAT TTTTAACTTTTATTTTCTTTT TTGTGAATAT chrII:476814-477795 - 78 5.43e-06 CT CGTATTTTTTCTTTCTTTTTT GGTGAGCCTA chrXI:578683-579559 - 56 6.77e-06 TCAGTTCTAA CTTCCTTCCTTTTCTTTCACT ATTAATTGAA chrV:51816-53324 - 45 6.77e-06 TTTTTCTATC TGTTTTGTCTCTTCTCTTCCT CTCTGGATAA chrIII:107117-107826 - 65 6.77e-06 TGCCACTATA TTTCTATTCGTATTTATTTTT ATGTATACTT chrXIV:415183-416161 + 29 7.55e-06 TCAGAAATCA TTTACTTTGTTTTCCTTTTTT TAAGTGCTAG chrXII:809714-815751 - 16 7.55e-06 TCCTTTTCAG CTTCATTTTCATTTCCTTCAT AGGCAGCGGT chrVII:726368-726731 + 35 7.55e-06 GAAATCATGT CCTTTTTTTTTTTGCCATTCT TATACATTTT chrVII:640732-642200 - 21 7.55e-06 CGAGGGAGCA TTTTCTTTGTCTTGTCTCCTG CAGGCAAATG chrIX:183115-183712 - 34 7.55e-06 ACTTCTTGGA AGTCAATTTTTTTTTCCTTCT GAATCAGTAA chrIV:322152-323651 - 28 7.55e-06 GGGTTCTTGG CGTCTTCTTCTTCGTTTCTCT TTCTGGAAAT chrXVI:654100-655061 + 12 8.39e-06 TACTAACATA TTTTGATATTTTTTCTTTTTT GAATACAGGG chrIX:370222-370722 + 69 8.39e-06 TATCGGAGTA TGTTTATTTTATTTTTTTCAT ATCCGCTCGA chrII:644961-645488 + 75 9.32e-06 TTATTTTTTG TTTCTATACCATTATTTTTCT TGAAT chrXII:730820-732339 + 49 1.03e-05 AATAAATCGT TTTCTACTTTCTTCTGCTGCT ATAATAAGCA chrII:642790-643249 - 17 1.03e-05 AGTGCGAGCT TCTTTTTTTTTTTGCAATCCT TATTGAATTT chrIII:162493-163267 - 71 1.27e-05 GCCATTTTA TTTCCTGTCCCCTTCATCTTT GTTTATATCC chrXV:977083-978380 + 36 1.40e-05 CGAAAGGGCA TTGTCATCCTCTTCTCTTTTT ATCGAGCTGC chrVIII:237330-238830 - 52 1.40e-05 CCTCAAGGGG TATTATCTCCCTTTTATCTTT ACATACTGTC chrVII:541715-542169 + 30 1.40e-05 CGTATCGGAG TGTTCTTTTTCTTACCTCTTG AAAAAGAGGT chrV:396093-396561 - 56 1.40e-05 AAAGAACTGT TTTCTACATCTATTTGTATTT TAGGAAATTA chrXIII:652049-653011 + 52 1.54e-05 CACGCACATA CCTTTTTTTTTTTTTCAATTG CTAGTTCATA chrXI:282775-284939 - 60 1.54e-05 GGCCTTTGGC TTTTCAGCCTTTTGCTTCTTT GGTGGAGTGT chrX:607918-608110 + 80 1.54e-05 GATTATTGTT TTTTAATTTTTTTTTTATCAG chrX:58326-59430 - 65 1.54e-05 AACTAAAATA TTTTCATCTTTTCGTATTATT CGATTTGCGC chrIX:68256-68476 + 61 1.70e-05 AGATGTATGG TTTTTCTTTTTTTGTGCTCCG TGTCGATATT chrXV:571416-572339 + 56 1.86e-05 TGATCACTTG CTGCAACATTTTTTTATTTTT TCAAATCATA chrX:89835-90415 + 32 1.86e-05 TCGTGAAAGC TTTCCTTACCTTTATCTATCG CATCGATTGA chrVII:561294-561705 - 20 1.86e-05 TTTCAATTTT TGTTCACATTCTTTTTCATTT ACATAAATGA chrXVI:134120-135872 - 3 2.05e-05 CCGAAAAGAT TATCTTCACTTTTACCTTCTT GA chrII:87934-88583 + 51 2.05e-05 GATAACAATA TTGCTTTTTTTCTCTGACTTT AACTAATCGT chrVI:191167-191789 - 50 2.24e-05 TCTTTTTTAA ATTCTTGCTTCTTATCCTTCT ATAATAAACC chrIV:980669-981219 + 9 2.24e-05 ATTATTCT TTTTTATCGCATTGTCATTCT GGTACTATTA chrVIII:147625-148775 - 64 2.68e-05 ATGCTCACTT TTTCCTGTCTCCTCTAACTTT TCTGATGTAT chrXVI:404441-407919 - 65 2.93e-05 CTATCTTTTG CGTTTACTTTCTTATATTATT ATTTTCCGCT chrXI:140591-141456 - 23 2.93e-05 GTATCGGAGT TTTCATTATTATCTTTAATCT AGCAGTACTA chrIII:30221-30931 - 19 2.93e-05 GTTCAAAAAA TTTTTCGTGCTTTTCCTTTAT TGAAAATCAT chrII:604067-607114 + 29 2.93e-05 CACGGATCAT TTTTCATTTTACTTTGTCATT TTTATTTCAT chrXI:74405-75384 - 32 3.48e-05 TAGTGTGGCT TTTCATCTGCTTTATGTAATT TAGAAAGCCA chrVII:531273-532634 + 32 3.48e-05 AATATGAAGT ATTTCTCCTTTTCTTGTTACT AGTGAACCCT chrV:321433-321829 - 75 3.48e-05 ATGTC TTTCAATATCTTCTTTACTAT AGTTTAGAGG chrIV:1256654-1257282 - 69 3.48e-05 GGCTTCCGCA TTTTTTGTGCAATTTTTTTTT ATACTCTATT chrII:326498-327141 - 1 3.78e-05 GTTGGATCAA ACTCTTTATTTTTTTAAATTT chrXVI:75488-76796 + 44 4.11e-05 TGGAGCTTAA TCTCATCCTGTTTGTATTTCT GTTGTTGGCT chrX:348817-349421 + 43 4.11e-05 CTAATACAGT TTTCGTTTCTTTTGTAATGTT CAGATAGGAG chrXIII:131536-132084 - 41 4.46e-05 GTGAGTGCTT TGTTTCTTCTTTTTTGAATAT GCTAATTCTA chrVII:148061-149759 + 62 4.46e-05 AAGATCTCAT CGTTCTTCCCTTCTCTACTTT CACACTTTTG chrIV:305452-307856 - 48 4.84e-05 ATAACTGCTA ATTTTTTTCCACTTCCCCTTT TTTGTTTGTT chrVII:779088-779931 - 80 5.24e-05 . CCTTTCCATTCTTTCCATTTT ATCCATTATC chrIV:1488758-1489928 - 32 5.24e-05 ATCTGTTTAT TTTTATTTCCTCTCTATAATT ATTACCTGTA chrIII:177069-178828 + 73 5.24e-05 ATCCAAAAGT TTTTTTTTTTAATTCTTACAT AGTATCT chrVI:180566-181238 + 61 6.12e-05 TAACAAATAT TTTCATCTTGTCTGTTATATT CTCGGAAGCT chrV:99748-100363 - 52 6.12e-05 ATAACAAATT CTTCTATCTCTATCTCTCCAT GTCGCTTATA chrIX:257380-258180 - 78 6.12e-05 TC TTTACTGCCTTTTTTCCACCT GCGATACCGA chrII:478964-479488 - 53 6.12e-05 TATGGTTTAG TATCTATCTTCTCCTTCTCTT ACAAAAAAAC chrXIV:602091-602568 - 11 7.11e-05 CAAGAGACCA TTGTTATCTGTTTTTCACCCT CCCTTCACAC chrVII:122101-123023 - 45 7.11e-05 TACCTTGATC CTTCCACTGTTTTTCCCTGTG CCAATTACAT chrIV:338479-341643 + 36 7.11e-05 ACGACGTTGG TATCTTTATTATTGTCATTTG ACCCAGCTTT chrXVI:718413-719672 - 52 7.66e-05 CAATGGAATT TTTAATTTTCCTTTTGATATG ATGATTTGTT chrXV:252799-254709 - 15 7.66e-05 ATCCGCAATC AATTTATTCCTTTTTAATCTT TTGTGCAGAG chrXII:780441-781878 + 20 7.66e-05 CACTCCGATC ATTCCTTATTTTTCTTATAAT CTGTTAACCT chrXI:379694-381121 + 15 8.23e-05 GGGATAACAA CTTTCCCATTCCTTTAATCTT TTCTTGTAAG chrX:703305-703786 + 12 8.23e-05 TTTTAATGTT TGTTTATTTGTTTATTTCCTG CTGAACTGAA chrXIII:759787-760198 - 61 9.49e-05 TTGACTATGG TTTTTTTCGTCTCATGTATAT CTATAATATC chrXIII:225286-226651 - 48 9.49e-05 TATCGTCATA TGTTTTCTTTAACTTATTTAT TGTATGACTT chrIV:359135-359780 + 54 9.49e-05 ATGGATGATA TTTTATTCTTATTATCAACAT GTACAAAGTG chrXV:464266-464803 + 75 1.02e-04 CCCTTTTATT TTTAATTATTTATTTCCTATT GGTCG chrIV:1075126-1075742 - 60 1.25e-04 ACATTTGTTT TTTCACTACTACTATATTTTT AGTTGAATCC chrIV:53784-54552 - 19 1.61e-04 CGTTCGGTAA CTTATACATTTATTTATTTAT TTATTTGCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTTYTTTTTTTTHTTTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:459630-459986 2.7e-11 41_[+3]_38 chrIV:519659-520084 2.8e-10 78_[+3]_1 chrXVI:819338-820035 7.8e-10 22_[+3]_57 chrXVI:188623-189289 2e-09 28_[+3]_51 chrIV:229474-231413 7.6e-09 66_[-3]_13 chrV:251119-251397 1.6e-08 30_[+3]_49 chrIV:1239355-1240173 2e-08 42_[-3]_37 chrIV:118439-119011 2.4e-08 54_[+3]_25 chrXVI:282067-283232 6.7e-08 43_[+3]_36 chrXV:677778-679453 9.8e-08 30_[+3]_49 chrV:85126-87246 9.8e-08 40_[-3]_39 chrVII:806125-808230 1.2e-07 39_[+3]_40 chrIV:541235-541912 1.4e-07 30_[-3]_49 chrVIII:214142-214325 2e-07 73_[+3]_6 chrII:36238-36855 2.4e-07 7_[+3]_72 chrXII:1028173-1028543 2.8e-07 27_[+3]_52 chrXVI:699794-700651 3.3e-07 23_[+3]_56 chrXVI:572030-572784 4.5e-07 52_[+3]_27 chrXIII:807738-808543 4.5e-07 62_[+3]_17 chrXVI:821635-822172 5.2e-07 43_[+3]_36 chrVII:544205-544921 5.2e-07 41_[-3]_38 chrVI:223926-224148 5.2e-07 9_[-3]_70 chrIX:210513-211308 5.2e-07 25_[-3]_54 chrIV:437541-438548 5.2e-07 76_[-3]_3 chrX:538342-538889 7e-07 68_[+3]_11 chrIV:83433-83834 7e-07 42_[+3]_37 chrXV:663242-664243 9.3e-07 9_[+3]_70 chrXII:793451-797597 9.3e-07 44_[-3]_35 chrXIV:104614-105549 1.1e-06 11_[+3]_68 chrVII:736208-736897 1.1e-06 43_[-3]_36 chrVI:226390-227271 1.1e-06 45_[+3]_34 chrXII:797879-798109 1.2e-06 71_[-3]_8 chrX:614269-615612 1.2e-06 34_[+3]_45 chrIII:142137-142997 1.6e-06 54_[-3]_25 chrXIII:747756-748196 1.8e-06 47_[+3]_32 chrXI:490701-491466 1.8e-06 9_[+3]_70 chrXV:620194-624373 2.4e-06 39_[-3]_40 chrXII:214675-215062 2.4e-06 32_[-3]_47 chrVII:1003941-1004422 2.7e-06 3_[-3]_76 chrX:390793-391310 3e-06 [-3]_79 chrVIII:492450-493615 3e-06 2_[-3]_77 chrI:180957-181531 3e-06 66_[+3]_13 chrXV:281961-282594 3.4e-06 31_[+3]_48 chrXV:110870-111391 3.4e-06 76_[-3]_3 chrVIII:466808-467366 3.4e-06 39_[+3]_40 chrII:44948-45330 3.4e-06 27_[-3]_52 chrXV:1003920-1004990 3.8e-06 69_[+3]_10 chrXIV:568051-569080 4.3e-06 48_[+3]_31 chrXI:512993-513592 4.3e-06 64_[-3]_15 chrX:196670-197432 4.3e-06 41_[-3]_38 chrXIV:352281-352936 4.8e-06 74_[+3]_5 chrXIV:102569-103332 4.8e-06 60_[-3]_19 chrII:476814-477795 5.4e-06 77_[-3]_2 chrXI:578683-579559 6.8e-06 55_[-3]_24 chrV:51816-53324 6.8e-06 44_[-3]_35 chrIII:107117-107826 6.8e-06 64_[-3]_15 chrXIV:415183-416161 7.5e-06 28_[+3]_51 chrXII:809714-815751 7.5e-06 15_[-3]_64 chrVII:726368-726731 7.5e-06 34_[+3]_45 chrVII:640732-642200 7.5e-06 20_[-3]_59 chrIX:183115-183712 7.5e-06 33_[-3]_46 chrIV:322152-323651 7.5e-06 27_[-3]_52 chrXVI:654100-655061 8.4e-06 11_[+3]_68 chrIX:370222-370722 8.4e-06 68_[+3]_11 chrII:644961-645488 9.3e-06 74_[+3]_5 chrXII:730820-732339 1e-05 48_[+3]_31 chrII:642790-643249 1e-05 16_[-3]_63 chrIII:162493-163267 1.3e-05 70_[-3]_9 chrXV:977083-978380 1.4e-05 35_[+3]_44 chrVIII:237330-238830 1.4e-05 51_[-3]_28 chrVII:541715-542169 1.4e-05 29_[+3]_50 chrV:396093-396561 1.4e-05 55_[-3]_24 chrXIII:652049-653011 1.5e-05 51_[+3]_28 chrXI:282775-284939 1.5e-05 59_[-3]_20 chrX:607918-608110 1.5e-05 79_[+3] chrX:58326-59430 1.5e-05 64_[-3]_15 chrIX:68256-68476 1.7e-05 60_[+3]_19 chrXV:571416-572339 1.9e-05 55_[+3]_24 chrX:89835-90415 1.9e-05 31_[+3]_48 chrVII:561294-561705 1.9e-05 19_[-3]_60 chrXVI:134120-135872 2e-05 2_[-3]_77 chrII:87934-88583 2e-05 50_[+3]_29 chrVI:191167-191789 2.2e-05 49_[-3]_30 chrIV:980669-981219 2.2e-05 8_[+3]_71 chrVIII:147625-148775 2.7e-05 63_[-3]_16 chrXVI:404441-407919 2.9e-05 64_[-3]_15 chrXI:140591-141456 2.9e-05 22_[-3]_57 chrIII:30221-30931 2.9e-05 18_[-3]_61 chrII:604067-607114 2.9e-05 28_[+3]_51 chrXI:74405-75384 3.5e-05 31_[-3]_48 chrVII:531273-532634 3.5e-05 31_[+3]_48 chrV:321433-321829 3.5e-05 74_[-3]_5 chrIV:1256654-1257282 3.5e-05 68_[-3]_11 chrII:326498-327141 3.8e-05 [-3]_79 chrXVI:75488-76796 4.1e-05 43_[+3]_36 chrX:348817-349421 4.1e-05 42_[+3]_37 chrXIII:131536-132084 4.5e-05 40_[-3]_39 chrVII:148061-149759 4.5e-05 61_[+3]_18 chrIV:305452-307856 4.8e-05 47_[-3]_32 chrVII:779088-779931 5.2e-05 79_[-3] chrIV:1488758-1489928 5.2e-05 31_[-3]_48 chrIII:177069-178828 5.2e-05 72_[+3]_7 chrVI:180566-181238 6.1e-05 60_[+3]_19 chrV:99748-100363 6.1e-05 51_[-3]_28 chrIX:257380-258180 6.1e-05 77_[-3]_2 chrII:478964-479488 6.1e-05 52_[-3]_27 chrXIV:602091-602568 7.1e-05 10_[-3]_69 chrVII:122101-123023 7.1e-05 44_[-3]_35 chrIV:338479-341643 7.1e-05 35_[+3]_44 chrXVI:718413-719672 7.7e-05 51_[-3]_28 chrXV:252799-254709 7.7e-05 14_[-3]_65 chrXII:780441-781878 7.7e-05 19_[+3]_60 chrXI:379694-381121 8.2e-05 14_[+3]_65 chrX:703305-703786 8.2e-05 11_[+3]_68 chrXIII:759787-760198 9.5e-05 60_[-3]_19 chrXIII:225286-226651 9.5e-05 47_[-3]_32 chrIV:359135-359780 9.5e-05 53_[+3]_26 chrXV:464266-464803 0.0001 74_[+3]_5 chrIV:1075126-1075742 0.00012 59_[-3]_20 chrIV:53784-54552 0.00016 18_[-3]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTTYTTTTTTTTHTTTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTYTTYTTTTTTTTHTTTTT width=21 seqs=120 chrXII:459630-459986 ( 42) TTTCTTTTTTTTTTTTTTTTT 1 chrIV:519659-520084 ( 79) TTTTTTTTTTTTTTTTTTTTT 1 chrXVI:819338-820035 ( 23) TTTCTATTTTTTTTTTTTTTT 1 chrXVI:188623-189289 ( 29) TTTCTTTTTTTTTTCTTCTTT 1 chrIV:229474-231413 ( 67) CTTCTTCTTCTTTTTCTTCTT 1 chrV:251119-251397 ( 31) TTTCTTTTCTTTTCTTTTCTT 1 chrIV:1239355-1240173 ( 43) CTTCTTCTTCCTTTTCTTCTT 1 chrIV:118439-119011 ( 55) CTTCTTCCTTTTTTTGTTTTT 1 chrXVI:282067-283232 ( 44) TTTTATTCCTTTTTTTTTTTT 1 chrXV:677778-679453 ( 31) TTTTATTTTCTTTTCATTTTT 1 chrV:85126-87246 ( 41) TTTTTTTTTCTTTTTTCATTT 1 chrVII:806125-808230 ( 40) TTTCTTCATTTTTTTGCTTCT 1 chrIV:541235-541912 ( 31) TTTCTTTTTTCTTATTCTTCT 1 chrVIII:214142-214325 ( 74) TTTTTTTTTTTTTTTTATTCG 1 chrII:36238-36855 ( 8) ATTCTTTTTTTTTTCATTTCT 1 chrXII:1028173-1028543 ( 28) TTTTTTCCTTCTTTCTTCCTT 1 chrXVI:699794-700651 ( 24) TTTCTACTCCTTTTTTACTCT 1 chrXVI:572030-572784 ( 53) TTTCCCCTTTCTTTTCCCTTT 1 chrXIII:807738-808543 ( 63) TTTTCTTACCTTTCTCTTTTT 1 chrXVI:821635-822172 ( 44) ATTCTTTTTTCTTTCATTCTT 1 chrVII:544205-544921 ( 42) TTTTTTTCTTTTTCTGCTCTT 1 chrVI:223926-224148 ( 10) TTTTTTTTGGTTTTTTTTTTT 1 chrIX:210513-211308 ( 26) TTTTAATTTTTTTTCCATTCT 1 chrIV:437541-438548 ( 77) CTTCTTCTTCTTTTTGTCTTG 1 chrX:538342-538889 ( 69) TTTTTTTTTTTTCGTTTATTT 1 chrIV:83433-83834 ( 43) TTTTTTTTCTTTTTCCACATT 1 chrXV:663242-664243 ( 10) TTTTTTTTTCATTATTTTTCT 1 chrXII:793451-797597 ( 45) TGTCTTCTTCTTTTTTTTGTT 1 chrXIV:104614-105549 ( 12) CTTTATCTTTATTTTTTTTCT 1 chrVII:736208-736897 ( 44) TTTTTTTTTTTTTATAAATTT 1 chrVI:226390-227271 ( 46) TTTTTTCTTTTTCCTGTCTCT 1 chrXII:797879-798109 ( 72) TTTCATCTTTCTTGCGATTTT 1 chrX:614269-615612 ( 35) TTTCCTTCTTTCTTCCCCTTT 1 chrIII:142137-142997 ( 55) TTTCTACTCTCTTTCACATTT 1 chrXIII:747756-748196 ( 48) TTTCTTTCGTCTTTTTCATCT 1 chrXI:490701-491466 ( 10) TTTTTTTACTTTTATAATTTT 1 chrXV:620194-624373 ( 40) TTTCTTCATTCTTTTAACTAT 1 chrXII:214675-215062 ( 33) CTTTTATTCTCCTTTATTTTT 1 chrVII:1003941-1004422 ( 4) TTGTTTCTCCTTTCTTTTTTT 1 chrX:390793-391310 ( 1) TTTTCCCTCTATTTTGTTTTT 1 chrVIII:492450-493615 ( 3) CTTCTTCTTTCTCTTCTAATT 1 chrI:180957-181531 ( 67) TTTCTTTTTCCTCCTATACTT 1 chrXV:281961-282594 ( 32) TGTCAATTTTTTTGCCATTTT 1 chrXV:110870-111391 ( 77) TTTTATCTTTCTCTTATTTTG 1 chrVIII:466808-467366 ( 40) TTTTTTTCCCTTTGTTCTTAT 1 chrII:44948-45330 ( 28) CTTCATTTCTTTTTCCTAATT 1 chrXV:1003920-1004990 ( 70) ATTTTACTTCATTTTTTTTTT 1 chrXIV:568051-569080 ( 49) TTTCTTGTGTTTCTCCTTCCT 1 chrXI:512993-513592 ( 65) TTTATTTTGCTTTTTATTCCT 1 chrX:196670-197432 ( 42) TTTCCTCCTCTTCTTATCATT 1 chrXIV:352281-352936 ( 75) TTTCCATACTTTTTCATACTT 1 chrXIV:102569-103332 ( 61) TTTTAACTTTTATTTTCTTTT 1 chrII:476814-477795 ( 78) CGTATTTTTTCTTTCTTTTTT 1 chrXI:578683-579559 ( 56) CTTCCTTCCTTTTCTTTCACT 1 chrV:51816-53324 ( 45) TGTTTTGTCTCTTCTCTTCCT 1 chrIII:107117-107826 ( 65) TTTCTATTCGTATTTATTTTT 1 chrXIV:415183-416161 ( 29) TTTACTTTGTTTTCCTTTTTT 1 chrXII:809714-815751 ( 16) CTTCATTTTCATTTCCTTCAT 1 chrVII:726368-726731 ( 35) CCTTTTTTTTTTTGCCATTCT 1 chrVII:640732-642200 ( 21) TTTTCTTTGTCTTGTCTCCTG 1 chrIX:183115-183712 ( 34) AGTCAATTTTTTTTTCCTTCT 1 chrIV:322152-323651 ( 28) CGTCTTCTTCTTCGTTTCTCT 1 chrXVI:654100-655061 ( 12) TTTTGATATTTTTTCTTTTTT 1 chrIX:370222-370722 ( 69) TGTTTATTTTATTTTTTTCAT 1 chrII:644961-645488 ( 75) TTTCTATACCATTATTTTTCT 1 chrXII:730820-732339 ( 49) TTTCTACTTTCTTCTGCTGCT 1 chrII:642790-643249 ( 17) TCTTTTTTTTTTTGCAATCCT 1 chrIII:162493-163267 ( 71) TTTCCTGTCCCCTTCATCTTT 1 chrXV:977083-978380 ( 36) TTGTCATCCTCTTCTCTTTTT 1 chrVIII:237330-238830 ( 52) TATTATCTCCCTTTTATCTTT 1 chrVII:541715-542169 ( 30) TGTTCTTTTTCTTACCTCTTG 1 chrV:396093-396561 ( 56) TTTCTACATCTATTTGTATTT 1 chrXIII:652049-653011 ( 52) CCTTTTTTTTTTTTTCAATTG 1 chrXI:282775-284939 ( 60) TTTTCAGCCTTTTGCTTCTTT 1 chrX:607918-608110 ( 80) TTTTAATTTTTTTTTTATCAG 1 chrX:58326-59430 ( 65) TTTTCATCTTTTCGTATTATT 1 chrIX:68256-68476 ( 61) TTTTTCTTTTTTTGTGCTCCG 1 chrXV:571416-572339 ( 56) CTGCAACATTTTTTTATTTTT 1 chrX:89835-90415 ( 32) TTTCCTTACCTTTATCTATCG 1 chrVII:561294-561705 ( 20) TGTTCACATTCTTTTTCATTT 1 chrXVI:134120-135872 ( 3) TATCTTCACTTTTACCTTCTT 1 chrII:87934-88583 ( 51) TTGCTTTTTTTCTCTGACTTT 1 chrVI:191167-191789 ( 50) ATTCTTGCTTCTTATCCTTCT 1 chrIV:980669-981219 ( 9) TTTTTATCGCATTGTCATTCT 1 chrVIII:147625-148775 ( 64) TTTCCTGTCTCCTCTAACTTT 1 chrXVI:404441-407919 ( 65) CGTTTACTTTCTTATATTATT 1 chrXI:140591-141456 ( 23) TTTCATTATTATCTTTAATCT 1 chrIII:30221-30931 ( 19) TTTTTCGTGCTTTTCCTTTAT 1 chrII:604067-607114 ( 29) TTTTCATTTTACTTTGTCATT 1 chrXI:74405-75384 ( 32) TTTCATCTGCTTTATGTAATT 1 chrVII:531273-532634 ( 32) ATTTCTCCTTTTCTTGTTACT 1 chrV:321433-321829 ( 75) TTTCAATATCTTCTTTACTAT 1 chrIV:1256654-1257282 ( 69) TTTTTTGTGCAATTTTTTTTT 1 chrII:326498-327141 ( 1) ACTCTTTATTTTTTTAAATTT 1 chrXVI:75488-76796 ( 44) TCTCATCCTGTTTGTATTTCT 1 chrX:348817-349421 ( 43) TTTCGTTTCTTTTGTAATGTT 1 chrXIII:131536-132084 ( 41) TGTTTCTTCTTTTTTGAATAT 1 chrVII:148061-149759 ( 62) CGTTCTTCCCTTCTCTACTTT 1 chrIV:305452-307856 ( 48) ATTTTTTTCCACTTCCCCTTT 1 chrVII:779088-779931 ( 80) CCTTTCCATTCTTTCCATTTT 1 chrIV:1488758-1489928 ( 32) TTTTATTTCCTCTCTATAATT 1 chrIII:177069-178828 ( 73) TTTTTTTTTTAATTCTTACAT 1 chrVI:180566-181238 ( 61) TTTCATCTTGTCTGTTATATT 1 chrV:99748-100363 ( 52) CTTCTATCTCTATCTCTCCAT 1 chrIX:257380-258180 ( 78) TTTACTGCCTTTTTTCCACCT 1 chrII:478964-479488 ( 53) TATCTATCTTCTCCTTCTCTT 1 chrXIV:602091-602568 ( 11) TTGTTATCTGTTTTTCACCCT 1 chrVII:122101-123023 ( 45) CTTCCACTGTTTTTCCCTGTG 1 chrIV:338479-341643 ( 36) TATCTTTATTATTGTCATTTG 1 chrXVI:718413-719672 ( 52) TTTAATTTTCCTTTTGATATG 1 chrXV:252799-254709 ( 15) AATTTATTCCTTTTTAATCTT 1 chrXII:780441-781878 ( 20) ATTCCTTATTTTTCTTATAAT 1 chrXI:379694-381121 ( 15) CTTTCCCATTCCTTTAATCTT 1 chrX:703305-703786 ( 12) TGTTTATTTGTTTATTTCCTG 1 chrXIII:759787-760198 ( 61) TTTTTTTCGTCTCATGTATAT 1 chrXIII:225286-226651 ( 48) TGTTTTCTTTAACTTATTTAT 1 chrIV:359135-359780 ( 54) TTTTATTCTTATTATCAACAT 1 chrXV:464266-464803 ( 75) TTTAATTATTTATTTCCTATT 1 chrIV:1075126-1075742 ( 60) TTTCACTACTACTATATTTTT 1 chrIV:53784-54552 ( 19) CTTATACATTTATTTATTTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTTYTTTTTTTTHTTTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 9.91699 E= 1.2e-067 -190 -5 -1355 124 -290 -192 -70 135 -1355 -1355 -218 163 -241 127 -1355 64 -63 8 -351 91 -18 -151 -1355 108 -1355 74 -134 97 -76 2 -1355 101 -1355 49 -92 103 -1355 54 -192 112 -113 40 -1355 97 -205 -105 -1355 142 -1355 -51 -1355 148 -131 -42 -51 95 -1355 40 -1355 127 -31 54 -42 10 -27 -18 -1355 89 -76 19 -1355 95 -131 25 -251 99 -131 35 -1355 103 -1355 -1355 -81 152 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTTYTTTTTTTTHTTTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 120 E= 1.2e-067 0.083333 0.183333 0.000000 0.733333 0.041667 0.050000 0.116667 0.791667 0.000000 0.000000 0.041667 0.958333 0.058333 0.458333 0.000000 0.483333 0.200000 0.200000 0.016667 0.583333 0.275000 0.066667 0.000000 0.658333 0.000000 0.316667 0.075000 0.608333 0.183333 0.191667 0.000000 0.625000 0.000000 0.266667 0.100000 0.633333 0.000000 0.275000 0.050000 0.675000 0.141667 0.250000 0.000000 0.608333 0.075000 0.091667 0.000000 0.833333 0.000000 0.133333 0.000000 0.866667 0.125000 0.141667 0.133333 0.600000 0.000000 0.250000 0.000000 0.750000 0.250000 0.275000 0.141667 0.333333 0.258333 0.166667 0.000000 0.575000 0.183333 0.216667 0.000000 0.600000 0.125000 0.225000 0.033333 0.616667 0.125000 0.241667 0.000000 0.633333 0.000000 0.000000 0.108333 0.891667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTTYTTTTTTTTHTTTTT MEME-3 regular expression -------------------------------------------------------------------------------- TTT[TC][TAC][TA][TC]T[TC][TC][TC]TTT[TC][TCA][TA][TC][TC][TC]T -------------------------------------------------------------------------------- Time 996.41 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71790-73730 1.09e-01 100 chrI:81906-82286 4.57e-01 100 chrI:138883-139346 2.56e-01 100 chrI:142145-143712 3.89e-01 100 chrI:151599-151858 2.52e-01 100 chrI:166175-167093 6.08e-01 100 chrI:180957-181531 2.70e-03 66_[+3(3.03e-06)]_13 chrI:182164-183217 4.40e-02 100 chrII:9394-9894 4.41e-04 38_[-1(1.34e-07)]_32 chrII:36238-36855 2.31e-04 7_[+3(2.35e-07)]_72 chrII:44948-45330 7.03e-03 27_[-3(3.41e-06)]_52 chrII:45579-46957 1.43e-01 47_[+2(6.17e-05)]_32 chrII:59476-61298 8.26e-01 100 chrII:87934-88583 5.10e-03 50_[+3(2.05e-05)]_29 chrII:88953-90356 1.42e-01 100 chrII:144116-145715 7.40e-01 100 chrII:165091-165430 4.49e-01 100 chrII:167545-168194 8.10e-01 100 chrII:168355-169639 5.80e-01 100 chrII:181339-181754 9.18e-01 100 chrII:197265-197826 1.25e-16 3_[-2(8.89e-13)]_18_[+1(8.13e-12)]_\ 28 chrII:226990-227360 1.31e-01 100 chrII:254823-255712 2.86e-01 100 chrII:256229-257154 3.61e-02 4_[+2(7.95e-05)]_75 chrII:257311-258012 9.60e-01 100 chrII:266187-266691 5.25e-06 31_[+1(2.32e-10)]_39 chrII:326498-327141 1.15e-10 [-3(3.78e-05)]_1_[-1(9.29e-12)]_48 chrII:332244-333077 6.17e-01 100 chrII:347386-348013 3.45e-04 3_[-1(1.34e-07)]_67 chrII:350550-351139 1.83e-02 37_[-2(4.44e-05)]_42 chrII:373476-375801 1.05e-01 16_[-2(7.95e-05)]_63 chrII:405603-406352 4.61e-03 37_[-2(4.82e-05)]_42 chrII:413485-416121 3.66e-01 100 chrII:476814-477795 1.28e-02 77_[-3(5.43e-06)]_2 chrII:478964-479488 1.44e-01 52_[-3(6.12e-05)]_27 chrII:592281-593580 2.43e-01 100 chrII:604067-607114 2.56e-02 28_[+3(2.93e-05)]_51 chrII:611844-614145 2.06e-01 100 chrII:642790-643249 9.73e-09 16_[-3(1.03e-05)]_[-1(2.41e-09)]_33 chrII:644961-645488 4.51e-09 34_[+1(3.18e-10)]_10_[+3(9.32e-06)]_\ 5 chrII:679836-681932 7.67e-01 100 chrIII:192-1023 2.15e-01 100 chrIII:30221-30931 3.64e-02 18_[-3(2.93e-05)]_61 chrIII:82267-83140 5.22e-01 100 chrIII:83425-83732 6.20e-01 100 chrIII:90871-91133 1.86e-01 100 chrIII:107117-107826 2.72e-02 64_[-3(6.77e-06)]_15 chrIII:123332-123849 9.73e-10 36_[-1(3.89e-14)]_34 chrIII:127581-127872 1.25e-06 44_[-2(3.49e-10)]_35 chrIII:137759-138994 2.83e-01 100 chrIII:142137-142997 8.02e-03 54_[-3(1.61e-06)]_25 chrIII:149520-150192 8.93e-01 100 chrIII:150933-151601 3.69e-08 66_[-1(2.29e-11)]_4 chrIII:162493-163267 4.52e-02 70_[-3(1.27e-05)]_9 chrIII:163481-164280 3.76e-01 100 chrIII:168019-168551 2.45e-08 65_[-1(2.02e-11)]_5 chrIII:177069-178828 7.00e-02 72_[+3(5.24e-05)]_7 chrIII:227782-228392 9.66e-01 100 chrIII:295324-296047 6.74e-01 100 chrIV:45168-46180 1.66e-01 100 chrIV:53784-54552 1.65e-01 100 chrIV:83433-83834 1.94e-12 5_[+1(2.26e-13)]_7_[+3(7.00e-07)]_\ 37 chrIV:116243-118213 8.05e-01 100 chrIV:118439-119011 2.95e-04 54_[+3(2.43e-08)]_25 chrIV:125316-126451 6.41e-01 100 chrIV:129623-131006 2.53e-01 100 chrIV:216595-217531 2.25e-01 100 chrIV:220961-222358 4.10e-01 100 chrIV:229474-231413 3.24e-05 66_[-3(7.62e-09)]_13 chrIV:305452-307856 1.18e-01 47_[-3(4.84e-05)]_32 chrIV:308048-310201 9.63e-01 100 chrIV:321645-321945 2.61e-01 100 chrIV:322152-323651 1.48e-03 27_[-3(7.55e-06)]_52 chrIV:338479-341643 1.90e-02 35_[+3(7.11e-05)]_44 chrIV:355025-356940 4.03e-01 100 chrIV:358085-358509 2.40e-01 100 chrIV:359135-359780 1.25e-01 53_[+3(9.49e-05)]_26 chrIV:382037-384781 2.66e-02 100 chrIV:410164-410778 8.37e-09 [+1(7.64e-11)]_25_[+2(6.53e-05)]_24 chrIV:411255-411657 4.39e-01 100 chrIV:427645-428758 2.79e-01 100 chrIV:433678-435103 7.68e-01 100 chrIV:437541-438548 3.75e-03 76_[-3(5.20e-07)]_3 chrIV:453494-454662 1.44e-01 100 chrIV:488434-489167 9.83e-08 46_[-1(9.29e-12)]_24 chrIV:490415-491242 7.25e-01 100 chrIV:491439-492718 5.75e-02 100 chrIV:519659-520084 6.37e-06 9_[+3(7.66e-05)]_14_[+3(1.14e-05)]_\ 13_[+3(2.81e-10)]_1 chrIV:520654-521161 2.46e-01 100 chrIV:525533-527187 3.78e-01 100 chrIV:541235-541912 1.14e-03 30_[-3(1.41e-07)]_49 chrIV:555368-556631 6.82e-02 100 chrIV:567843-568059 5.52e-01 100 chrIV:568506-569350 2.83e-06 45_[+1(3.92e-10)]_25 chrIV:578797-580730 6.74e-01 100 chrIV:600658-602537 4.69e-01 100 chrIV:619632-620235 9.79e-02 100 chrIV:645029-645372 6.56e-09 2_[-1(2.02e-11)]_16_[+2(4.44e-05)]_\ 31 chrIV:667585-668205 1.24e-01 100 chrIV:758807-759641 2.61e-01 100 chrIV:802531-803015 6.62e-09 7_[-1(2.02e-11)]_16_[+2(4.44e-05)]_\ 26 chrIV:835819-836286 1.97e-01 100 chrIV:884265-884610 3.53e-01 100 chrIV:913929-916269 1.97e-01 100 chrIV:946160-946643 7.07e-05 19_[+1(5.20e-09)]_51 chrIV:980669-981219 1.64e-02 8_[+3(2.24e-05)]_71 chrIV:992692-993239 9.01e-01 100 chrIV:1016955-1017501 1.15e-07 28_[-1(1.08e-10)]_42 chrIV:1075126-1075742 8.51e-02 100 chrIV:1095097-1095676 3.16e-08 33_[-1(7.15e-10)]_37 chrIV:1150022-1151197 7.29e-01 100 chrIV:1161975-1164768 3.94e-01 100 chrIV:1175554-1176146 1.51e-02 100 chrIV:1201526-1202083 1.05e-12 [-2(4.55e-09)]_17_[+1(2.29e-11)]_32 chrIV:1236449-1237968 9.49e-01 100 chrIV:1239355-1240173 4.63e-05 42_[-3(1.96e-08)]_37 chrIV:1256654-1257282 6.11e-02 68_[-3(3.48e-05)]_11 chrIV:1269901-1271095 7.74e-02 5_[-2(9.16e-05)]_74 chrIV:1300937-1301309 2.90e-01 100 chrIV:1301576-1302529 7.27e-01 100 chrIV:1305405-1307032 3.91e-01 100 chrIV:1351877-1353457 6.20e-01 100 chrIV:1359204-1361185 7.45e-01 100 chrIV:1401068-1403378 2.40e-02 45_[+2(4.32e-05)]_34 chrIV:1440598-1443464 8.10e-01 100 chrIV:1449808-1451218 3.99e-01 100 chrIV:1461241-1461834 3.16e-01 100 chrIV:1488758-1489928 1.27e-01 32_[-3(4.46e-05)]_47 chrIX:23468-25266 9.19e-01 100 chrIX:68256-68476 4.63e-02 60_[+3(1.70e-05)]_19 chrIX:69162-69968 4.12e-01 100 chrIX:98551-99490 7.51e-01 100 chrIX:99657-100297 4.31e-01 100 chrIX:174668-175539 3.50e-06 20_[+1(2.32e-10)]_50 chrIX:183115-183712 1.84e-02 33_[-3(7.55e-06)]_46 chrIX:197275-197810 6.49e-01 100 chrIX:210513-211308 2.53e-03 25_[-3(5.20e-07)]_54 chrIX:231308-232543 4.47e-01 100 chrIX:248431-249011 2.19e-01 100 chrIX:254250-254556 4.38e-01 100 chrIX:254970-257124 6.00e-01 100 chrIX:257380-258180 5.04e-02 77_[-3(6.12e-05)]_2 chrIX:299969-300643 7.68e-05 18_[+2(4.55e-09)]_61 chrIX:315986-318279 2.16e-01 100 chrIX:322402-324380 5.27e-01 100 chrIX:325748-326186 8.77e-01 100 chrIX:336097-336632 5.72e-06 34_[-1(1.84e-09)]_36 chrIX:370222-370722 4.10e-09 36_[+1(3.18e-10)]_2_[+3(8.39e-06)]_\ 11 chrV:51816-53324 3.03e-02 44_[-3(6.77e-06)]_35 chrV:53521-54047 7.36e-01 100 chrV:61039-62206 1.39e-01 100 chrV:67107-68967 4.24e-01 100 chrV:77951-79453 3.16e-02 66_[-2(1.08e-05)]_13 chrV:85126-87246 3.67e-04 40_[-3(9.82e-08)]_39 chrV:99748-100363 1.27e-01 51_[-3(6.12e-05)]_28 chrV:117150-118341 5.15e-01 100 chrV:130792-131438 9.09e-09 16_[-1(9.60e-11)]_16_[+2(4.44e-05)]_\ 17 chrV:135025-136076 6.17e-01 100 chrV:138463-140884 5.73e-01 100 chrV:176880-177564 3.82e-01 100 chrV:224280-225240 2.45e-01 100 chrV:249786-250748 4.49e-02 73_[-2(4.44e-05)]_6 chrV:251119-251397 1.68e-04 30_[+3(1.56e-08)]_49 chrV:268935-270231 4.26e-01 100 chrV:287938-288759 3.15e-01 100 chrV:305818-307748 2.32e-01 100 chrV:311709-312290 8.45e-01 100 chrV:321433-321829 7.67e-02 74_[-3(3.48e-05)]_5 chrV:321999-323908 5.24e-01 100 chrV:354668-355542 7.23e-01 100 chrV:363664-364445 1.04e-01 100 chrV:395643-395805 6.72e-02 100 chrV:396093-396561 5.08e-02 55_[-3(1.40e-05)]_24 chrV:396741-397932 2.27e-01 100 chrV:422779-422936 7.67e-01 100 chrV:423097-425636 8.23e-01 100 chrV:430984-432835 9.83e-02 100 chrV:434389-435164 6.67e-01 100 chrV:435587-436008 5.55e-13 4_[-1(2.29e-11)]_17_[+2(4.55e-09)]_\ 28 chrV:438496-439085 1.69e-06 3_[+1(1.50e-10)]_67 chrV:441768-442661 9.92e-01 100 chrV:442966-443380 4.03e-01 100 chrV:469175-469677 1.59e-01 100 chrV:487008-487603 5.75e-01 100 chrV:492195-492555 2.90e-10 26_[-1(5.20e-09)]_17_[+2(1.77e-08)]_\ 6 chrV:545693-546557 2.03e-01 100 chrV:550937-551724 1.44e-16 4_[-1(8.13e-12)]_18_[+2(8.89e-13)]_\ 27 chrVI:53221-54425 3.73e-01 100 chrVI:63993-65370 4.07e-01 100 chrVI:75221-76351 2.76e-01 100 chrVI:82454-84433 3.25e-01 100 chrVI:95472-95874 3.43e-01 100 chrVI:101155-102227 6.42e-01 100 chrVI:136110-137704 5.71e-01 100 chrVI:148012-148407 8.19e-01 100 chrVI:157848-158244 9.73e-01 100 chrVI:162022-162944 2.88e-01 100 chrVI:167245-167729 1.11e-09 4_[-2(2.56e-08)]_33_[+1(5.20e-09)]_\ 12 chrVI:180566-181238 8.17e-02 60_[+3(6.12e-05)]_19 chrVI:191167-191789 1.61e-02 49_[-3(2.24e-05)]_30 chrVI:210457-210930 1.11e-04 38_[+2(2.56e-08)]_41 chrVI:220120-222052 2.21e-01 100 chrVI:222862-223084 1.38e-01 100 chrVI:223926-224148 3.77e-03 9_[-3(5.20e-07)]_70 chrVI:224348-225992 1.51e-01 100 chrVI:226390-227271 3.06e-04 45_[+3(1.07e-06)]_34 chrVII:24043-25437 7.13e-01 100 chrVII:110346-110782 3.52e-01 100 chrVII:115325-115721 3.08e-05 19_[-2(2.53e-09)]_60 chrVII:122101-123023 5.58e-02 44_[-3(7.11e-05)]_35 chrVII:148061-149759 3.83e-02 61_[+3(4.46e-05)]_18 chrVII:185127-185930 2.09e-01 100 chrVII:205274-205803 2.80e-05 37_[-2(5.48e-09)]_42 chrVII:227254-228345 9.02e-01 100 chrVII:254105-254758 3.75e-01 100 chrVII:276979-278705 5.70e-02 100 chrVII:287052-287765 5.89e-01 100 chrVII:310450-312877 7.86e-01 100 chrVII:319237-320143 3.72e-02 100 chrVII:328377-329023 3.55e-01 100 chrVII:345907-346622 9.32e-02 100 chrVII:364217-364441 6.94e-01 100 chrVII:364894-366702 8.66e-01 100 chrVII:371198-371790 4.03e-01 100 chrVII:398602-400126 4.18e-01 100 chrVII:405465-406033 6.13e-01 100 chrVII:411632-412597 2.12e-01 100 chrVII:422877-423570 5.60e-02 100 chrVII:437214-438399 7.07e-01 100 chrVII:438595-440102 7.25e-01 100 chrVII:440358-441149 4.38e-10 12_[-1(2.41e-09)]_36_[+2(2.22e-08)]_\ 1 chrVII:479095-482944 2.12e-01 100 chrVII:516691-518970 2.30e-01 100 chrVII:531273-532634 1.03e-01 31_[+3(3.48e-05)]_48 chrVII:533220-535189 7.40e-01 100 chrVII:541715-542169 1.13e-02 29_[+3(1.40e-05)]_50 chrVII:544205-544921 4.45e-09 41_[-3(5.20e-07)]_1_[-1(1.84e-09)]_\ 7 chrVII:545090-546083 1.16e-01 100 chrVII:555065-557478 9.89e-01 100 chrVII:561294-561705 5.53e-02 19_[-3(1.86e-05)]_60 chrVII:599366-601872 4.08e-01 100 chrVII:609338-610011 6.05e-01 100 chrVII:640732-642200 8.49e-04 20_[-3(7.55e-06)]_59 chrVII:647998-648499 7.67e-01 100 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28_[+3(1.96e-09)]_51 chrXVI:208034-210573 3.48e-01 100 chrXVI:280560-281872 2.78e-01 100 chrXVI:282067-283232 8.01e-04 43_[+3(6.74e-08)]_36 chrXVI:302571-304490 3.26e-01 100 chrXVI:338198-338406 3.88e-01 100 chrXVI:338638-339353 7.87e-01 100 chrXVI:370942-373359 6.79e-01 100 chrXVI:378661-379009 6.66e-01 100 chrXVI:404441-407919 6.41e-02 64_[-3(2.93e-05)]_15 chrXVI:432505-434393 6.02e-01 100 chrXVI:435628-436190 2.49e-06 33_[-1(2.41e-09)]_37 chrXVI:451255-453133 4.52e-01 100 chrXVI:520008-520510 1.20e-01 100 chrXVI:559904-560286 5.55e-01 100 chrXVI:572030-572784 4.45e-04 52_[+3(4.47e-07)]_27 chrXVI:581851-582258 2.85e-05 62_[-2(4.55e-09)]_17 chrXVI:622056-623099 4.19e-10 12_[-1(2.41e-09)]_36_[+2(2.22e-08)]_\ 1 chrXVI:641959-643374 2.18e-01 100 chrXVI:654100-655061 1.31e-02 11_[+3(8.39e-06)]_68 chrXVI:689347-690767 6.44e-01 100 chrXVI:699794-700651 1.63e-03 23_[+3(3.26e-07)]_56 chrXVI:701850-702343 5.69e-01 100 chrXVI:718413-719672 8.42e-02 51_[-3(7.66e-05)]_28 chrXVI:731577-732281 7.72e-03 8_[-2(3.89e-06)]_71 chrXVI:744065-744650 7.39e-06 18_[+1(1.68e-08)]_52 chrXVI:768287-769471 7.43e-01 100 chrXVI:775639-776173 5.10e-01 100 chrXVI:794257-796212 5.47e-01 100 chrXVI:810587-811144 4.46e-01 100 chrXVI:819338-820035 1.03e-05 22_[+3(7.77e-10)]_57 chrXVI:821635-822172 3.55e-03 43_[+3(5.20e-07)]_36 chrXVI:856716-857154 1.03e-11 21_[-2(1.40e-08)]_17_[+1(7.64e-11)]_\ 11 chrXVI:860127-861113 6.17e-01 100 chrXVI:879146-880557 9.04e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************