# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--INO80/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--INO80/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--INO80/seqs-shuffled
#   positives: 600 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--INO80/seqs-centered (Sat Jan 18 18:56:34 PST 2020)
#   negatives: 600 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--INO80/seqs-shuffled (Sat Jan 18 18:56:34 PST 2020)
#        host: kali.stanford.edu
#        when: Sat Jan 18 19:13:16 PST 2020

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.306 C 0.192 G 0.197 T 0.305


MOTIF GGWTCGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GGWTCGA    TCGAWCC         71          5   3.9e-017   1.2e-012
#          GGTTCGA    TCGAACC         55          3   3.5e-014   1.1e-009
#          GGATCGA    TCGATCC         22          2   1.5e-005   4.9e-001

letter-probability matrix: alength= 4 w= 7 nsites= 71 E= 1.2e-012
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.281690 0.000000 0.000000 0.718310
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAAKAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAKAA   TTMTTTTT         95         31   7.2e-010   2.3e-005
#         AAAAAGAA   TTCTTTTT         47         12   1.5e-006   4.8e-002
#         AAAAATAA   TTATTTTT         50         22   4.6e-004   1.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 102 E= 2.3e-005
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.470588 0.529412
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAAGAY DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GAAGAY     RTCTTC        111         44   4.2e-009   1.4e-004
#           GAAGAT     ATCTTC         72         24   1.7e-007   5.5e-003
#           GAAGAC     GTCTTC         44         22   3.7e-003   1.2e+002

letter-probability matrix: alength= 4 w= 6 nsites= 124 E= 1.4e-004
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.379032 0.000000 0.620968


# Stopping reason: E-value threshold exceeded
#    Running time: 16.34 seconds