******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--HSF1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71816-73261 1.0000 100 chrI:81845-82397 1.0000 100 chrI:138875-139361 1.0000 100 chrI:142365-143166 1.0000 100 chrI:166172-166663 1.0000 100 chrI:180927-181508 1.0000 100 chrI:182077-183182 1.0000 100 chrII:9367-10024 1.0000 100 chrII:35795-36571 1.0000 100 chrII:44459-45369 1.0000 100 chrII:59836-61748 1.0000 100 chrII:88916-89169 1.0000 100 chrII:89584-90215 1.0000 100 chrII:165055-165456 1.0000 100 chrII:167651-168550 1.0000 100 chrII:181025-181868 1.0000 100 chrII:197264-197870 1.0000 100 chrII:226976-227363 1.0000 100 chrII:266168-266676 1.0000 100 chrII:326395-327088 1.0000 100 chrII:332187-332783 1.0000 100 chrII:347412-348137 1.0000 100 chrII:350589-351141 1.0000 100 chrII:393133-394795 1.0000 100 chrII:405641-406294 1.0000 100 chrII:408668-408950 1.0000 100 chrII:415479-416661 1.0000 100 chrII:592274-593400 1.0000 100 chrII:595002-595493 1.0000 100 chrII:604027-606168 1.0000 100 chrII:642814-643259 1.0000 100 chrII:644888-645412 1.0000 100 chrIII:83-1057 1.0000 100 chrIII:78502-78805 1.0000 100 chrIII:82372-83108 1.0000 100 chrIII:90858-91123 1.0000 100 chrIII:107189-107802 1.0000 100 chrIII:123170-123816 1.0000 100 chrIII:127574-127921 1.0000 100 chrIII:141957-142163 1.0000 100 chrIII:142365-143172 1.0000 100 chrIII:149722-150194 1.0000 100 chrIII:151045-151588 1.0000 100 chrIII:163450-164845 1.0000 100 chrIII:168109-168561 1.0000 100 chrIII:177247-178789 1.0000 100 chrIII:227731-228498 1.0000 100 chrIII:295286-296004 1.0000 100 chrIII:315683-316591 1.0000 100 chrIV:7-337 1.0000 100 chrIV:45189-45932 1.0000 100 chrIV:83439-83857 1.0000 100 chrIV:117135-118174 1.0000 100 chrIV:129742-131041 1.0000 100 chrIV:216557-218076 1.0000 100 chrIV:221700-222601 1.0000 100 chrIV:229429-230511 1.0000 100 chrIV:307974-308460 1.0000 100 chrIV:321609-321997 1.0000 100 chrIV:331003-332195 1.0000 100 chrIV:340549-341700 1.0000 100 chrIV:357780-358510 1.0000 100 chrIV:359046-359806 1.0000 100 chrIV:382012-384788 1.0000 100 chrIV:409945-410789 1.0000 100 chrIV:411210-411662 1.0000 100 chrIV:433970-434870 1.0000 100 chrIV:437538-437999 1.0000 100 chrIV:487654-488238 1.0000 100 chrIV:488438-489139 1.0000 100 chrIV:490918-491302 1.0000 100 chrIV:519657-519909 1.0000 100 chrIV:520705-521164 1.0000 100 chrIV:538914-539289 1.0000 100 chrIV:568681-569543 1.0000 100 chrIV:578910-580464 1.0000 100 chrIV:619740-620274 1.0000 100 chrIV:644899-645387 1.0000 100 chrIV:667692-668290 1.0000 100 chrIV:758454-759639 1.0000 100 chrIV:802561-803049 1.0000 100 chrIV:835759-837969 1.0000 100 chrIV:884254-884924 1.0000 100 chrIV:946095-946654 1.0000 100 chrIV:980667-981219 1.0000 100 chrIV:992693-993403 1.0000 100 chrIV:1013506-1014054 1.0000 100 chrIV:1016958-1017503 1.0000 100 chrIV:1074892-1075782 1.0000 100 chrIV:1094926-1095658 1.0000 100 chrIV:1150538-1151165 1.0000 100 chrIV:1162926-1164594 1.0000 100 chrIV:1175579-1176070 1.0000 100 chrIV:1201510-1202096 1.0000 100 chrIV:1256492-1257294 1.0000 100 chrIV:1259541-1259956 1.0000 100 chrIV:1300820-1302497 1.0000 100 chrIV:1305347-1307326 1.0000 100 chrIV:1351783-1353444 1.0000 100 chrIV:1354636-1356341 1.0000 100 chrIV:1359344-1359881 1.0000 100 chrIV:1401033-1402538 1.0000 100 chrIV:1450826-1451589 1.0000 100 chrIV:1461453-1461845 1.0000 100 chrIV:1489367-1489852 1.0000 100 chrIX:23463-25287 1.0000 100 chrIX:68124-68520 1.0000 100 chrIX:98175-100140 1.0000 100 chrIX:174862-175725 1.0000 100 chrIX:183301-183987 1.0000 100 chrIX:197337-197808 1.0000 100 chrIX:210499-211517 1.0000 100 chrIX:248481-249079 1.0000 100 chrIX:254193-254598 1.0000 100 chrIX:255182-256801 1.0000 100 chrIX:257318-257990 1.0000 100 chrIX:299855-300494 1.0000 100 chrIX:316027-316618 1.0000 100 chrIX:323081-324388 1.0000 100 chrIX:325740-326173 1.0000 100 chrIX:336016-336641 1.0000 100 chrIX:370221-370782 1.0000 100 chrIX:380069-381663 1.0000 100 chrIX:382067-383280 1.0000 100 chrIX:426715-427128 1.0000 100 chrIX:427472-427798 1.0000 100 chrV:53501-53957 1.0000 100 chrV:61715-62152 1.0000 100 chrV:77495-79441 1.0000 100 chrV:85079-87818 1.0000 100 chrV:99880-100331 1.0000 100 chrV:110374-111072 1.0000 100 chrV:117376-118337 1.0000 100 chrV:121877-122609 1.0000 100 chrV:130879-131403 1.0000 100 chrV:135118-136128 1.0000 100 chrV:138419-139757 1.0000 100 chrV:140202-141279 1.0000 100 chrV:174517-175066 1.0000 100 chrV:176893-177515 1.0000 100 chrV:214077-215285 1.0000 100 chrV:249782-250535 1.0000 100 chrV:270350-270807 1.0000 100 chrV:288127-288769 1.0000 100 chrV:305443-307213 1.0000 100 chrV:311676-312291 1.0000 100 chrV:354685-355706 1.0000 100 chrV:362159-363323 1.0000 100 chrV:396149-396593 1.0000 100 chrV:397025-397669 1.0000 100 chrV:422754-423557 1.0000 100 chrV:431004-432140 1.0000 100 chrV:434393-434978 1.0000 100 chrV:435572-436036 1.0000 100 chrV:438466-438962 1.0000 100 chrV:441750-442715 1.0000 100 chrV:443035-443382 1.0000 100 chrV:469094-469682 1.0000 100 chrV:487221-487757 1.0000 100 chrV:492191-492562 1.0000 100 chrV:551003-551588 1.0000 100 chrVI:64305-65864 1.0000 100 chrVI:95464-95914 1.0000 100 chrVI:101138-102410 1.0000 100 chrVI:136410-137710 1.0000 100 chrVI:157838-158249 1.0000 100 chrVI:162011-162590 1.0000 100 chrVI:167239-167682 1.0000 100 chrVI:180641-181683 1.0000 100 chrVI:190959-191852 1.0000 100 chrVI:210454-211636 1.0000 100 chrVI:220168-222164 1.0000 100 chrVI:223223-224181 1.0000 100 chrVI:226328-227313 1.0000 100 chrVII:255-928 1.0000 100 chrVII:23974-25429 1.0000 100 chrVII:110262-110781 1.0000 100 chrVII:115331-115721 1.0000 100 chrVII:121942-123284 1.0000 100 chrVII:149078-149967 1.0000 100 chrVII:167874-169001 1.0000 100 chrVII:185271-186156 1.0000 100 chrVII:205302-205794 1.0000 100 chrVII:254086-254725 1.0000 100 chrVII:276993-278702 1.0000 100 chrVII:287159-287683 1.0000 100 chrVII:291602-291947 1.0000 100 chrVII:310436-312653 1.0000 100 chrVII:319208-320136 1.0000 100 chrVII:328399-329087 1.0000 100 chrVII:345688-346626 1.0000 100 chrVII:364881-366566 1.0000 100 chrVII:370836-371511 1.0000 100 chrVII:405460-405880 1.0000 100 chrVII:411832-412587 1.0000 100 chrVII:422704-423514 1.0000 100 chrVII:438141-438971 1.0000 100 chrVII:440493-441006 1.0000 100 chrVII:531371-531787 1.0000 100 chrVII:533462-535206 1.0000 100 chrVII:541717-542312 1.0000 100 chrVII:544316-544886 1.0000 100 chrVII:555170-556688 1.0000 100 chrVII:561460-561726 1.0000 100 chrVII:648769-649416 1.0000 100 chrVII:661500-661970 1.0000 100 chrVII:700439-701237 1.0000 100 chrVII:706926-707187 1.0000 100 chrVII:726347-728356 1.0000 100 chrVII:730959-732077 1.0000 100 chrVII:736166-736784 1.0000 100 chrVII:738873-739611 1.0000 100 chrVII:774140-774707 1.0000 100 chrVII:779378-779923 1.0000 100 chrVII:788077-788781 1.0000 100 chrVII:794213-794575 1.0000 100 chrVII:823337-823736 1.0000 100 chrVII:828382-828984 1.0000 100 chrVII:845449-846259 1.0000 100 chrVII:856659-857672 1.0000 100 chrVII:876065-878160 1.0000 100 chrVII:878513-879091 1.0000 100 chrVII:882786-883734 1.0000 100 chrVII:902900-903110 1.0000 100 chrVII:921156-921774 1.0000 100 chrVII:930856-931644 1.0000 100 chrVII:1000291-1001406 1.0000 100 chrVII:1003986-1004425 1.0000 100 chrVII:1057743-1059648 1.0000 100 chrVIII:34546-35059 1.0000 100 chrVIII:35293-36100 1.0000 100 chrVIII:62263-62939 1.0000 100 chrVIII:74804-75840 1.0000 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chrXI:158197-158690 1.0000 100 chrXI:162217-162760 1.0000 100 chrXI:202258-203319 1.0000 100 chrXI:219631-220113 1.0000 100 chrXI:282651-284420 1.0000 100 chrXI:302703-303236 1.0000 100 chrXI:307897-308453 1.0000 100 chrXI:313172-314016 1.0000 100 chrXI:326052-327336 1.0000 100 chrXI:379687-380223 1.0000 100 chrXI:382144-382469 1.0000 100 chrXI:431047-432282 1.0000 100 chrXI:457546-458864 1.0000 100 chrXI:490743-491350 1.0000 100 chrXI:512973-513612 1.0000 100 chrXI:517652-518123 1.0000 100 chrXI:519534-521521 1.0000 100 chrXI:551966-552257 1.0000 100 chrXI:578712-579550 1.0000 100 chrXI:614207-614450 1.0000 100 chrXI:618724-619318 1.0000 100 chrXII:48683-49270 1.0000 100 chrXII:92339-92910 1.0000 100 chrXII:167774-168278 1.0000 100 chrXII:198615-199727 1.0000 100 chrXII:214759-215066 1.0000 100 chrXII:232180-234044 1.0000 100 chrXII:241603-243432 1.0000 100 chrXII:253865-254882 1.0000 100 chrXII:261594-263971 1.0000 100 chrXII:281942-284103 1.0000 100 chrXII:366007-366512 1.0000 100 chrXII:369676-370083 1.0000 100 chrXII:370518-371336 1.0000 100 chrXII:373992-374624 1.0000 100 chrXII:423681-424501 1.0000 100 chrXII:426912-427468 1.0000 100 chrXII:427745-428009 1.0000 100 chrXII:440454-441661 1.0000 100 chrXII:448083-448849 1.0000 100 chrXII:459582-460768 1.0000 100 chrXII:498313-499726 1.0000 100 chrXII:515289-516568 1.0000 100 chrXII:521639-522482 1.0000 100 chrXII:522687-523363 1.0000 100 chrXII:592207-592855 1.0000 100 chrXII:605144-605643 1.0000 100 chrXII:628130-628886 1.0000 100 chrXII:636831-639953 1.0000 100 chrXII:656838-657230 1.0000 100 chrXII:673554-674541 1.0000 100 chrXII:713145-714433 1.0000 100 chrXII:728304-728556 1.0000 100 chrXII:731524-732338 1.0000 100 chrXII:734564-734962 1.0000 100 chrXII:781041-781942 1.0000 100 chrXII:783868-784606 1.0000 100 chrXII:793587-795341 1.0000 100 chrXII:796389-797661 1.0000 100 chrXII:805924-806813 1.0000 100 chrXII:818502-819240 1.0000 100 chrXII:838078-839311 1.0000 100 chrXII:874871-875618 1.0000 100 chrXII:897628-900312 1.0000 100 chrXII:902293-904515 1.0000 100 chrXII:921711-923736 1.0000 100 chrXII:924120-925028 1.0000 100 chrXII:932061-932545 1.0000 100 chrXII:951203-954011 1.0000 100 chrXII:962826-963277 1.0000 100 chrXII:975733-976195 1.0000 100 chrXII:1012125-1013264 1.0000 100 chrXII:1017824-1019650 1.0000 100 chrXII:1028181-1028614 1.0000 100 chrXII:1051943-1052215 1.0000 100 chrXIII:91404-92138 1.0000 100 chrXIII:131607-132098 1.0000 100 chrXIII:145511-146284 1.0000 100 chrXIII:168241-169360 1.0000 100 chrXIII:195948-196303 1.0000 100 chrXIII:225303-225749 1.0000 100 chrXIII:253363-254159 1.0000 100 chrXIII:259018-259393 1.0000 100 chrXIII:290549-291154 1.0000 100 chrXIII:296734-297183 1.0000 100 chrXIII:297395-298909 1.0000 100 chrXIII:302836-303088 1.0000 100 chrXIII:320938-321323 1.0000 100 chrXIII:352072-353235 1.0000 100 chrXIII:362932-363412 1.0000 100 chrXIII:372166-372663 1.0000 100 chrXIII:379035-379676 1.0000 100 chrXIII:420288-420870 1.0000 100 chrXIII:433402-433793 1.0000 100 chrXIII:455019-455428 1.0000 100 chrXIII:463321-463872 1.0000 100 chrXIII:480392-480843 1.0000 100 chrXIII:484149-484864 1.0000 100 chrXIII:498954-501135 1.0000 100 chrXIII:504910-505259 1.0000 100 chrXIII:551325-553326 1.0000 100 chrXIII:557562-558113 1.0000 100 chrXIII:572655-573168 1.0000 100 chrXIII:586322-586906 1.0000 100 chrXIII:672755-674527 1.0000 100 chrXIII:731968-732505 1.0000 100 chrXIII:747642-748162 1.0000 100 chrXIII:753059-755707 1.0000 100 chrXIII:768182-768452 1.0000 100 chrXIII:807738-808561 1.0000 100 chrXIII:837705-838282 1.0000 100 chrXIII:872458-872938 1.0000 100 chrXIV:61976-64410 1.0000 100 chrXIV:96044-96527 1.0000 100 chrXIV:102573-103572 1.0000 100 chrXIV:104572-105048 1.0000 100 chrXIV:240804-242178 1.0000 100 chrXIV:330715-331583 1.0000 100 chrXIV:374588-375117 1.0000 100 chrXIV:413711-414908 1.0000 100 chrXIV:442746-443761 1.0000 100 chrXIV:444171-445052 1.0000 100 chrXIV:495171-495751 1.0000 100 chrXIV:499241-500544 1.0000 100 chrXIV:518036-519140 1.0000 100 chrXIV:546251-547651 1.0000 100 chrXIV:560195-560870 1.0000 100 chrXIV:568053-568644 1.0000 100 chrXIV:569464-570151 1.0000 100 chrXIV:577177-577519 1.0000 100 chrXIV:602104-602588 1.0000 100 chrXIV:631680-632123 1.0000 100 chrXIV:632399-632836 1.0000 100 chrXIV:726024-726345 1.0000 100 chrXIV:783490-784326 1.0000 100 chrXV:12178-12578 1.0000 100 chrXV:69218-69895 1.0000 100 chrXV:79690-80165 1.0000 100 chrXV:92776-93843 1.0000 100 chrXV:94059-95046 1.0000 100 chrXV:109491-110649 1.0000 100 chrXV:110854-111615 1.0000 100 chrXV:113582-113997 1.0000 100 chrXV:114214-114412 1.0000 100 chrXV:159180-160135 1.0000 100 chrXV:161068-161701 1.0000 100 chrXV:216274-216714 1.0000 100 chrXV:226450-226935 1.0000 100 chrXV:228103-228825 1.0000 100 chrXV:253774-254637 1.0000 100 chrXV:274013-275038 1.0000 100 chrXV:281981-283306 1.0000 100 chrXV:287205-288455 1.0000 100 chrXV:300896-301796 1.0000 100 chrXV:340173-340596 1.0000 100 chrXV:353894-354359 1.0000 100 chrXV:438460-439373 1.0000 100 chrXV:444643-446220 1.0000 100 chrXV:464274-464939 1.0000 100 chrXV:487438-487873 1.0000 100 chrXV:504978-505523 1.0000 100 chrXV:514307-514714 1.0000 100 chrXV:571511-572133 1.0000 100 chrXV:594233-594671 1.0000 100 chrXV:639159-639449 1.0000 100 chrXV:663456-664113 1.0000 100 chrXV:678644-679749 1.0000 100 chrXV:710125-710352 1.0000 100 chrXV:720466-721526 1.0000 100 chrXV:722889-724690 1.0000 100 chrXV:779637-780134 1.0000 100 chrXV:853931-854802 1.0000 100 chrXV:866454-867960 1.0000 100 chrXV:881181-882449 1.0000 100 chrXV:901376-901972 1.0000 100 chrXV:909341-910970 1.0000 100 chrXV:925157-925432 1.0000 100 chrXV:968113-968457 1.0000 100 chrXV:976269-976626 1.0000 100 chrXV:978769-979206 1.0000 100 chrXV:980113-981008 1.0000 100 chrXV:1003991-1004436 1.0000 100 chrXV:1025678-1026073 1.0000 100 chrXV:1028036-1029411 1.0000 100 chrXV:1070821-1071234 1.0000 100 chrXVI:55855-56434 1.0000 100 chrXVI:75288-76804 1.0000 100 chrXVI:135161-135853 1.0000 100 chrXVI:188387-188988 1.0000 100 chrXVI:210021-210480 1.0000 100 chrXVI:243355-244226 1.0000 100 chrXVI:279961-280270 1.0000 100 chrXVI:280522-281328 1.0000 100 chrXVI:281595-281981 1.0000 100 chrXVI:302437-304076 1.0000 100 chrXVI:338749-339234 1.0000 100 chrXVI:339934-340822 1.0000 100 chrXVI:378653-379039 1.0000 100 chrXVI:404517-406618 1.0000 100 chrXVI:406839-407571 1.0000 100 chrXVI:432556-434090 1.0000 100 chrXVI:435634-436207 1.0000 100 chrXVI:519945-520554 1.0000 100 chrXVI:559868-560291 1.0000 100 chrXVI:571987-572607 1.0000 100 chrXVI:574399-575425 1.0000 100 chrXVI:581837-582484 1.0000 100 chrXVI:622311-622874 1.0000 100 chrXVI:627291-628324 1.0000 100 chrXVI:689375-689880 1.0000 100 chrXVI:692841-694833 1.0000 100 chrXVI:698990-700634 1.0000 100 chrXVI:731608-732373 1.0000 100 chrXVI:744077-744615 1.0000 100 chrXVI:769031-769508 1.0000 100 chrXVI:775620-776170 1.0000 100 chrXVI:785560-786549 1.0000 100 chrXVI:794228-794846 1.0000 100 chrXVI:810580-811492 1.0000 100 chrXVI:818500-820060 1.0000 100 chrXVI:856694-857161 1.0000 100 chrXVI:860136-860761 1.0000 100 chrXVI:879465-880593 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--HSF1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--HSF1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--HSF1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 521 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 52100 N= 521 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--HSF1/background): A 0.304 C 0.196 G 0.196 T 0.304 ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAAYGVYCHCDMBSGGRWTCGAACC MEME-1 width = 30 sites = 73 llr = 1380 E-value = 6.4e-269 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAAYGVYCHCDMBSGGRWTCGAACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 88988876213112234113:54:::aa:: pos.-specific C 1::::::13:44645:544:::1:7:::a7 probability G 1::1:1:1:72122242357a42::a:::: matrix T 1111122252141213:2::::3a3::::2 bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 * * ** * Relative 1.4 * ****** Entropy 1.2 * * ******* (27.3 bits) 0.9 * * * *** ******* 0.7 ******* * **** ******* 0.5 ******* ** * *** **** ******* 0.2 ********************** ******* 0.0 ------------------------------ Multilevel AAAAAAAATGCCCCCGCCGGGAATCGAACC consensus TTC AT TGAAGCA GT T T sequence G A T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVYCHCDMBSGGRWTCGAACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrV:551003-551588 + 32 2.35e-14 TACGATTTTC AAAAAAAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrV:443035-443382 + 36 1.40e-13 AGATTTTCAA AAAAAATATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrXII:1051943-1052215 + 34 3.47e-13 TTAAAGTAAA AAAAATAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrXIV:602104-602588 - 68 5.84e-13 TAA AAAAAGAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrII:197264-197870 - 29 6.92e-13 ATTTGAATTG CAAAAAAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrIV:667692-668290 + 58 1.57e-12 GAGGAGAAAA AATAAAAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrXVI:581837-582484 - 3 8.35e-12 CCATGCAATA AAAAAGAAAGCCCTGTAGGGGGCTCGAACC CC chrX:396451-397015 + 35 8.35e-12 AGAAATATAA AAAAGAAATGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrIII:151045-151588 + 10 8.35e-12 TTTCCAAGA AAAAAGAAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrXII:214759-215066 + 13 9.64e-12 ATAAAAGTAA AAAATAAATGGACGCAACCGGAATCGAACC GATGACCTCT chrXIII:480392-480843 + 46 1.69e-11 TGAATCTTCA AAAAAAGAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrVI:162011-162590 - 27 2.22e-11 ATCAGAAAAA AAAGAAACTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrXIII:463321-463872 - 58 2.90e-11 CTGGTCTGAT AAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrVII:544316-544886 + 18 2.90e-11 GCAGAAAAAG AAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrIX:336016-336641 + 63 2.90e-11 CAGTTATGGT AAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTG chrVII:185271-186156 + 43 3.31e-11 TTTGAGCCTA AAAAAGATAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrXI:307897-308453 + 11 3.78e-11 TCTGACGGAA AAAAAAATTGATTTCGCCCAGGATCGAACT GGGGACGTTC chrII:266168-266676 - 57 5.57e-11 TTTCAGTATT CAAAAAAATGCTTCCAATCGGATTTGAACC GATGATCTCC chrXIII:572655-573168 + 14 6.32e-11 AAGTTTTGAA AAAAAATGTGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrX:422663-423363 - 25 6.32e-11 TCACAAAAAA AAAAAATGTGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrV:288127-288769 + 37 6.32e-11 CTCTAACAAT AAAAAAAACGACACCAGCAGGATTTGAACC AGCGCGGGCA chrXVI:860136-860761 - 30 7.17e-11 GGAGCAAAAA ATAAAATCTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrXII:592207-592855 + 30 7.17e-11 GCAAAAAACA AAAAAAAATGAGAGCTAAGGGATTCGAACC CTTGCATCCG chrXVI:435634-436207 + 15 8.12e-11 TTCTTTGGAA AAAAAGAAAGCTCGCACTCAGGATCGAACT AAGGACCAAC chrXII:426912-427468 - 42 9.19e-11 TAGAAGCTTA AAAAAATTCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrXIII:586322-586906 + 64 1.04e-10 GGGATGTCTT CAAAAAAATGATTTCGCCCAGGATCGAACT GGGGACG chrXIII:131607-132098 + 15 1.33e-10 AAAAAAGAAG AAACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrXI:162217-162760 + 41 1.33e-10 GACTGCTGGT GTAAAAAACACTCACGATGGGGGTCGAACC CATAATCTTC chrX:374205-374826 + 33 1.33e-10 ATCACGGAAG AAACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrII:405641-406294 - 11 1.33e-10 ATCACGGAAG AAACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrXIII:747642-748162 + 32 1.49e-10 AAAAAAAATA CTAAAAAACACTCACGATGGGGGTCGAACC CATAATCTTC chrII:642814-643259 + 13 1.49e-10 ATTGCAAAAA AAAAAAGAAGCTCGCACTCAGGATCGAACT AAGGACCAAC chrXVI:571987-572607 - 71 1.68e-10 . GGAAAAATTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrII:350589-351141 - 62 1.68e-10 AAAAATATA TAAAAATAAGGTCTTACCCGGATTCGAACC GGGGTTGTCC chrIV:1016958-1017503 + 19 1.89e-10 TAGAAAATAA AAAAGAAACTCCGAAGCGGGGAGTCGAACC CCGGTCTCCA chrII:226976-227363 - 16 3.37e-10 TTACTGTCCA AAAAATAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrX:617709-618371 - 8 3.78e-10 AAAAAATACA AAAAATAATGAGAGCTAAGGGATTCGAACC CTTGCAT chrIII:168109-168561 + 8 3.78e-10 TCTGTAT TCAAAAAAAGGTCCTACCCGGATTCGAACC GGGGTTGTCC chrXII:975733-976195 + 61 4.22e-10 TAATGCAAAA AAAATAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrXIII:320938-321323 + 59 4.72e-10 AGCCAAAAAA ATAAAAAATGGACGAGTCCGGAATCGAACC GGAGACCTCT chrXI:490743-491350 - 23 4.72e-10 TATAAAAGTA AAAAAATTCTTCCCCGCCAGGACTTGAACC TGGAATCTTC chrVII:774140-774707 - 27 4.72e-10 ATTAAAAGTA AAAAAATTTGGACGAGTCCGGAATCGAACC GGAGACCTCT chrVIII:115831-116401 + 33 8.12e-10 GGAAATCAAT GCAAAAAATGCTTCCAATCGGATTTGAACC GATGATCTCC chrXIII:420288-420870 + 51 1.24e-09 TAACGGCTGA GATAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrIV:619740-620274 + 4 1.37e-09 GTA TAAAAAATCTTCCCCGCCAGGACTTGAACC TGGAATCTTC chrXI:74383-74982 - 44 1.52e-09 AAAAAAGTTA AAAATAAGCGACCCCAGTGAGGGTTGAACT CACGATCTTG chrXII:92339-92910 - 55 1.68e-09 CCAAAAAAAG AAAATAAAGGGGCGAGCTGGGAATTGAACC CAGGGCCTCT chrVII:823337-823736 - 48 1.68e-09 AATGTAATCT TCAAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrIII:127574-127921 - 71 1.86e-09 . AAAATTAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrXVI:689375-689880 - 48 2.05e-09 TAATTTCAAA AAATAATACGACACCAGCAGGATTTGAACC AGCGCGGGCA chrIV:644899-645387 + 52 2.05e-09 AGAAGCCACA GTTAAAAAAGGTCCTACCCGGATTCGAACC GGGGTTGTCC chrXII:628130-628886 - 18 2.27e-09 TTCGGAAGGC AAAAATAATGGTTGCTAAGAGATTCGAACT CTTGCATCTT chrIII:90858-91123 - 11 2.27e-09 TGTTGAGGAA AAAAATAATGGTTGCTAAGAGATTCGAACT CTTGCATCTT chrI:180927-181508 - 66 2.27e-09 AAAGA AAAAATAATGGTTGCTAAGAGATTCGAACT CTTGCATCTT chrXIII:290549-291154 - 50 3.04e-09 ATTTCTTCAA AAAGAAGACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrXI:140649-141394 + 39 3.35e-09 TAAAGATAAT AATGAAAACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrXVI:744077-744615 - 38 4.45e-09 ACTTTAGGGA AAAAATTTTGCCACCTGTCAGAATTGAACT AACGACCTTT chrXV:710125-710352 - 63 5.89e-09 TCAAAGGT AAAAAAATTAGCGCCGCTCGGTTTCGATCC GAGGACATCA chrIV:488438-489139 + 51 6.45e-09 TTACGATAAA AAAGATTCTGATCCAACCGAGGTTCGAACT CGGGATCTTC chrV:492191-492562 + 18 7.74e-09 ATTAAAAGAA AAATAATCCTTCCCCGCCAGGACTTGAACC TGGAATCTTC chrXV:663456-664113 + 70 8.46e-09 ATAAAATATT CTTAAAAATGATTTCGCCCAGGATCGAACT G chrIX:370221-370782 - 16 2.18e-08 AAAAATAAAA TAAACATACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrIV:1150538-1151165 + 33 2.18e-08 TGTAGAAAAA ATAAAGTGCGTCACAGACAGGATTCGAACC TGCGCAGGTA chrXVI:55855-56434 + 67 3.84e-08 ATGGGGAAAA AAATTAATTGAAACGGACAGGAATTGAACC TGCA chrXIII:837705-838282 - 52 3.84e-08 ATCAAAAGTA AAAAAATATCTCCCGGGGGCGAGTCGAACG CCCGATCTCA chrIV:946095-946654 - 55 8.24e-08 GTGCTTGACA TAAAAAAATCTCCCGGGGGCGAGTCGAACG CCCGATCTCA chrVIII:358267-358770 + 2 1.03e-07 A AAAAAATATGCGAATTCTGTGGATCGAACA CAGGACCTCC chrIII:149722-150194 - 62 2.06e-07 CAGTTCAAA AAATTTAATAGCGCCGCTCGGTTTCGATCC GAGGACATCA chrVII:779378-779923 - 66 2.20e-07 AAAAA AGTAATCTTGAGCGGTACGAGAATCGAACC CGTGTCCCCA chrIV:1201510-1202096 - 48 2.35e-07 CATTTTGAAT GTGTTATTAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrIII:141957-142163 + 37 6.06e-07 ATATATGTCT TGGTAAAATGACCCCACTCAGGTTTCAACC GCGGGTTCAG chrIV:216557-218076 + 23 1.28e-06 CTACTATATG AAAAAATGAAAAGAGGCCCTGCTTTGAACC CGTACATTTT chrVII:115331-115721 + 66 1.50e-06 TTGCTTAAGC AAGGATACCGAAATGTCAGGGGTTCGAGCC CCCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVYCHCDMBSGGRWTCGAACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:551003-551588 2.3e-14 31_[+1]_39 chrV:443035-443382 1.4e-13 35_[+1]_35 chrXII:1051943-1052215 3.5e-13 33_[+1]_37 chrXIV:602104-602588 5.8e-13 67_[-1]_3 chrII:197264-197870 6.9e-13 28_[-1]_42 chrIV:667692-668290 1.6e-12 57_[+1]_13 chrXVI:581837-582484 8.4e-12 2_[-1]_68 chrX:396451-397015 8.4e-12 34_[+1]_36 chrIII:151045-151588 8.4e-12 9_[+1]_61 chrXII:214759-215066 9.6e-12 12_[+1]_58 chrXIII:480392-480843 1.7e-11 45_[+1]_25 chrVI:162011-162590 2.2e-11 26_[-1]_44 chrXIII:463321-463872 2.9e-11 57_[-1]_13 chrVII:544316-544886 2.9e-11 17_[+1]_53 chrIX:336016-336641 2.9e-11 62_[+1]_8 chrVII:185271-186156 3.3e-11 42_[+1]_28 chrXI:307897-308453 3.8e-11 10_[+1]_60 chrII:266168-266676 5.6e-11 56_[-1]_14 chrXIII:572655-573168 6.3e-11 13_[+1]_57 chrX:422663-423363 6.3e-11 24_[-1]_46 chrV:288127-288769 6.3e-11 36_[+1]_34 chrXVI:860136-860761 7.2e-11 29_[-1]_41 chrXII:592207-592855 7.2e-11 29_[+1]_41 chrXVI:435634-436207 8.1e-11 14_[+1]_56 chrXII:426912-427468 9.2e-11 41_[-1]_29 chrXIII:586322-586906 1e-10 63_[+1]_7 chrXIII:131607-132098 1.3e-10 14_[+1]_56 chrXI:162217-162760 1.3e-10 40_[+1]_30 chrX:374205-374826 1.3e-10 32_[+1]_38 chrII:405641-406294 1.3e-10 10_[-1]_60 chrXIII:747642-748162 1.5e-10 31_[+1]_39 chrII:642814-643259 1.5e-10 12_[+1]_58 chrXVI:571987-572607 1.7e-10 70_[-1] chrII:350589-351141 1.7e-10 61_[-1]_9 chrIV:1016958-1017503 1.9e-10 18_[+1]_52 chrII:226976-227363 3.4e-10 15_[-1]_55 chrX:617709-618371 3.8e-10 7_[-1]_63 chrIII:168109-168561 3.8e-10 7_[+1]_63 chrXII:975733-976195 4.2e-10 60_[+1]_10 chrXIII:320938-321323 4.7e-10 58_[+1]_12 chrXI:490743-491350 4.7e-10 22_[-1]_48 chrVII:774140-774707 4.7e-10 26_[-1]_44 chrVIII:115831-116401 8.1e-10 32_[+1]_38 chrXIII:420288-420870 1.2e-09 50_[+1]_20 chrIV:619740-620274 1.4e-09 3_[+1]_67 chrXI:74383-74982 1.5e-09 43_[-1]_27 chrXII:92339-92910 1.7e-09 54_[-1]_16 chrVII:823337-823736 1.7e-09 47_[-1]_23 chrIII:127574-127921 1.9e-09 70_[-1] chrXVI:689375-689880 2.1e-09 47_[-1]_23 chrIV:644899-645387 2.1e-09 51_[+1]_19 chrXII:628130-628886 2.3e-09 17_[-1]_53 chrIII:90858-91123 2.3e-09 10_[-1]_60 chrI:180927-181508 2.3e-09 65_[-1]_5 chrXIII:290549-291154 3e-09 49_[-1]_21 chrXI:140649-141394 3.3e-09 38_[+1]_32 chrXVI:744077-744615 4.5e-09 37_[-1]_33 chrXV:710125-710352 5.9e-09 62_[-1]_8 chrIV:488438-489139 6.5e-09 50_[+1]_20 chrV:492191-492562 7.7e-09 17_[+1]_53 chrXV:663456-664113 8.5e-09 69_[+1]_1 chrIX:370221-370782 2.2e-08 15_[-1]_55 chrIV:1150538-1151165 2.2e-08 32_[+1]_38 chrXVI:55855-56434 3.8e-08 66_[+1]_4 chrXIII:837705-838282 3.8e-08 51_[-1]_19 chrIV:946095-946654 8.2e-08 54_[-1]_16 chrVIII:358267-358770 1e-07 1_[+1]_69 chrIII:149722-150194 2.1e-07 61_[-1]_9 chrVII:779378-779923 2.2e-07 65_[-1]_5 chrIV:1201510-1202096 2.4e-07 47_[-1]_23 chrIII:141957-142163 6.1e-07 36_[+1]_34 chrIV:216557-218076 1.3e-06 22_[+1]_48 chrVII:115331-115721 1.5e-06 65_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVYCHCDMBSGGRWTCGAACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAAYGVYCHCDMBSGGRWTCGAACC width=30 seqs=73 chrV:551003-551588 ( 32) AAAAAAAATGGTCTCTAGCGGGATCGAACC 1 chrV:443035-443382 ( 36) AAAAAATATGGTCTCTAGCGGGATCGAACC 1 chrXII:1051943-1052215 ( 34) AAAAATAATGGTCTCTAGCGGGATCGAACC 1 chrXIV:602104-602588 ( 68) AAAAAGAATGGTCTCTAGCGGGATCGAACC 1 chrII:197264-197870 ( 29) CAAAAAAATGGTCTCTAGCGGGATCGAACC 1 chrIV:667692-668290 ( 58) AATAAAAATGGTCTCTAGCGGGATCGAACC 1 chrXVI:581837-582484 ( 3) AAAAAGAAAGCCCTGTAGGGGGCTCGAACC 1 chrX:396451-397015 ( 35) AAAAGAAATGCGCAAGCCCGGAATCGAACC 1 chrIII:151045-151588 ( 10) AAAAAGAAAGCCCTGTAGGGGGCTCGAACC 1 chrXII:214759-215066 ( 13) AAAATAAATGGACGCAACCGGAATCGAACC 1 chrXIII:480392-480843 ( 46) AAAAAAGAAGCCCTGTAGGGGGCTCGAACC 1 chrVI:162011-162590 ( 27) AAAGAAACTGCGCAAGCCCGGAATCGAACC 1 chrXIII:463321-463872 ( 58) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrVII:544316-544886 ( 18) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrIX:336016-336641 ( 63) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrVII:185271-186156 ( 43) AAAAAGATAGCCCTGTAGGGGGCTCGAACC 1 chrXI:307897-308453 ( 11) AAAAAAATTGATTTCGCCCAGGATCGAACT 1 chrII:266168-266676 ( 57) CAAAAAAATGCTTCCAATCGGATTTGAACC 1 chrXIII:572655-573168 ( 14) AAAAAATGTGCTCCAGGGGAGGTTCGAACT 1 chrX:422663-423363 ( 25) AAAAAATGTGCTCCAGGGGAGGTTCGAACT 1 chrV:288127-288769 ( 37) AAAAAAAACGACACCAGCAGGATTTGAACC 1 chrXVI:860136-860761 ( 30) ATAAAATCTGCGCAAGCCCGGAATCGAACC 1 chrXII:592207-592855 ( 30) AAAAAAAATGAGAGCTAAGGGATTCGAACC 1 chrXVI:435634-436207 ( 15) AAAAAGAAAGCTCGCACTCAGGATCGAACT 1 chrXII:426912-427468 ( 42) AAAAAATTCTCCGCGACGGGGAATTGAACC 1 chrXIII:586322-586906 ( 64) CAAAAAAATGATTTCGCCCAGGATCGAACT 1 chrXIII:131607-132098 ( 15) AAACAAAGCACTCACGATGGGGGTCGAACC 1 chrXI:162217-162760 ( 41) GTAAAAAACACTCACGATGGGGGTCGAACC 1 chrX:374205-374826 ( 33) AAACAAAGCACTCACGATGGGGGTCGAACC 1 chrII:405641-406294 ( 11) AAACAAAGCACTCACGATGGGGGTCGAACC 1 chrXIII:747642-748162 ( 32) CTAAAAAACACTCACGATGGGGGTCGAACC 1 chrII:642814-643259 ( 13) AAAAAAGAAGCTCGCACTCAGGATCGAACT 1 chrXVI:571987-572607 ( 71) GGAAAAATTGCGCAAGCCCGGAATCGAACC 1 chrII:350589-351141 ( 62) TAAAAATAAGGTCTTACCCGGATTCGAACC 1 chrIV:1016958-1017503 ( 19) AAAAGAAACTCCGAAGCGGGGAGTCGAACC 1 chrII:226976-227363 ( 16) AAAAATAACGACAACTGCAGGACTCGAACC 1 chrX:617709-618371 ( 8) AAAAATAATGAGAGCTAAGGGATTCGAACC 1 chrIII:168109-168561 ( 8) TCAAAAAAAGGTCCTACCCGGATTCGAACC 1 chrXII:975733-976195 ( 61) AAAATAAACGACCCCAGTGAGGGTTGAACT 1 chrXIII:320938-321323 ( 59) ATAAAAAATGGACGAGTCCGGAATCGAACC 1 chrXI:490743-491350 ( 23) AAAAAATTCTTCCCCGCCAGGACTTGAACC 1 chrVII:774140-774707 ( 27) AAAAAATTTGGACGAGTCCGGAATCGAACC 1 chrVIII:115831-116401 ( 33) GCAAAAAATGCTTCCAATCGGATTTGAACC 1 chrXIII:420288-420870 ( 51) GATAAAAATGATTTCGCCCAGGATCGAACT 1 chrIV:619740-620274 ( 4) TAAAAAATCTTCCCCGCCAGGACTTGAACC 1 chrXI:74383-74982 ( 44) AAAATAAGCGACCCCAGTGAGGGTTGAACT 1 chrXII:92339-92910 ( 55) AAAATAAAGGGGCGAGCTGGGAATTGAACC 1 chrVII:823337-823736 ( 48) TCAAAAAATGATTTCGCCCAGGATCGAACT 1 chrIII:127574-127921 ( 71) AAAATTAACGACCCCAGTGAGGGTTGAACT 1 chrXVI:689375-689880 ( 48) AAATAATACGACACCAGCAGGATTTGAACC 1 chrIV:644899-645387 ( 52) GTTAAAAAAGGTCCTACCCGGATTCGAACC 1 chrXII:628130-628886 ( 18) AAAAATAATGGTTGCTAAGAGATTCGAACT 1 chrIII:90858-91123 ( 11) AAAAATAATGGTTGCTAAGAGATTCGAACT 1 chrI:180927-181508 ( 66) AAAAATAATGGTTGCTAAGAGATTCGAACT 1 chrXIII:290549-291154 ( 50) AAAGAAGACTCCGATACGGGGAGTCGAACC 1 chrXI:140649-141394 ( 39) AATGAAAACTCCGATACGGGGAGTCGAACC 1 chrXVI:744077-744615 ( 38) AAAAATTTTGCCACCTGTCAGAATTGAACT 1 chrXV:710125-710352 ( 63) AAAAAAATTAGCGCCGCTCGGTTTCGATCC 1 chrIV:488438-489139 ( 51) AAAGATTCTGATCCAACCGAGGTTCGAACT 1 chrV:492191-492562 ( 18) AAATAATCCTTCCCCGCCAGGACTTGAACC 1 chrXV:663456-664113 ( 70) CTTAAAAATGATTTCGCCCAGGATCGAACT 1 chrIX:370221-370782 ( 16) TAAACATACTCCGATACGGGGAGTCGAACC 1 chrIV:1150538-1151165 ( 33) ATAAAGTGCGTCACAGACAGGATTCGAACC 1 chrXVI:55855-56434 ( 67) AAATTAATTGAAACGGACAGGAATTGAACC 1 chrXIII:837705-838282 ( 52) AAAAAATATCTCCCGGGGGCGAGTCGAACG 1 chrIV:946095-946654 ( 55) TAAAAAAATCTCCCGGGGGCGAGTCGAACG 1 chrVIII:358267-358770 ( 2) AAAAAATATGCGAATTCTGTGGATCGAACA 1 chrIII:149722-150194 ( 62) AAATTTAATAGCGCCGCTCGGTTTCGATCC 1 chrVII:779378-779923 ( 66) AGTAATCTTGAGCGGTACGAGAATCGAACC 1 chrIV:1201510-1202096 ( 48) GTGTTATTAGCCCTGTAGGGGGCTCGAACC 1 chrIII:141957-142163 ( 37) TGGTAAAATGACCCCACTCAGGTTTCAACC 1 chrIV:216557-218076 ( 23) AAAAAATGAAAAGAGGCCCTGCTTTGAACC 1 chrVII:115331-115721 ( 66) AAGGATACCGAAATGTCAGGGGTTCGAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVYCHCDMBSGGRWTCGAACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 36991 bayes= 7.38888 E= 6.4e-269 131 -152 -125 -166 141 -225 -225 -147 153 -1283 -225 -189 141 -225 -152 -189 148 -384 -284 -147 131 -1283 -125 -89 120 -384 -225 -30 102 -152 -84 -56 -101 74 -384 74 -147 -284 186 -101 -22 107 33 -189 -189 102 -67 39 -115 155 -38 -115 -47 91 -26 -30 -89 145 7 -166 -1 -1283 107 -8 28 120 -38 -347 -189 86 68 -30 -147 107 129 -1283 -22 -284 180 -347 -1283 -1283 235 -1283 78 -384 116 -347 39 -67 -3 -8 -1283 -1283 -1283 172 -1283 191 -1283 -22 -1283 -384 233 -1283 172 -1283 -1283 -1283 166 -1283 -384 -347 -1283 235 -1283 -1283 -447 189 -284 -38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVYCHCDMBSGGRWTCGAACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 73 E= 6.4e-269 0.753425 0.068493 0.082192 0.095890 0.808219 0.041096 0.041096 0.109589 0.876712 0.000000 0.041096 0.082192 0.808219 0.041096 0.068493 0.082192 0.849315 0.013699 0.027397 0.109589 0.753425 0.000000 0.082192 0.164384 0.698630 0.013699 0.041096 0.246575 0.616438 0.068493 0.109589 0.205479 0.150685 0.328767 0.013699 0.506849 0.109589 0.027397 0.712329 0.150685 0.260274 0.410959 0.246575 0.082192 0.082192 0.397260 0.123288 0.397260 0.136986 0.575342 0.150685 0.136986 0.219178 0.369863 0.164384 0.246575 0.164384 0.534247 0.205479 0.095890 0.301370 0.000000 0.410959 0.287671 0.369863 0.452055 0.150685 0.027397 0.082192 0.356164 0.315068 0.246575 0.109589 0.410959 0.479452 0.000000 0.260274 0.027397 0.684932 0.027397 0.000000 0.000000 1.000000 0.000000 0.520548 0.013699 0.438356 0.027397 0.397260 0.123288 0.191781 0.287671 0.000000 0.000000 0.000000 1.000000 0.000000 0.739726 0.000000 0.260274 0.000000 0.013699 0.986301 0.000000 1.000000 0.000000 0.000000 0.000000 0.958904 0.000000 0.013699 0.027397 0.000000 1.000000 0.000000 0.000000 0.013699 0.726027 0.027397 0.232877 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVYCHCDMBSGGRWTCGAACC MEME-1 regular expression -------------------------------------------------------------------------------- AAAAAA[AT][AT][TC]G[CAG][CT]C[CTA][CG][GAT][CA][CGT][GC][GA]G[AG][AT]T[CT]GAAC[CT] -------------------------------------------------------------------------------- Time 262.40 secs. ******************************************************************************** ******************************************************************************** MOTIF BDTRGCBYAGTKGKWARRGSS MEME-2 width = 21 sites = 79 llr = 1056 E-value = 7.8e-132 ******************************************************************************** -------------------------------------------------------------------------------- Motif BDTRGCBYAGTKGKWARRGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 13:4:::2a2::::36442:: pos.-specific C 3::::744:::2::2:12253 probability G 44:6a:31:8:5a51233635 matrix T 33a::333::a3:55211122 bits 2.3 * * 2.1 * * 1.9 * * 1.6 * * * * Relative 1.4 * ** *** * Entropy 1.2 **** *** * (19.3 bits) 0.9 **** *** * 0.7 **** *** ** ** 0.5 ****** ****** * *** 0.2 ********************* 0.0 --------------------- Multilevel GGTGGCCCAGTGGGTAAAGCG consensus CT A TTT A T TATGGAGC sequence TA G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTRGCBYAGTKGKWARRGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIII:259018-259393 - 59 2.86e-10 AGTATGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:167774-168278 - 24 2.86e-10 CATATGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:437538-437999 + 59 2.86e-10 AGTAAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:214759-215066 - 68 5.78e-10 TTTTAGGGCA CATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrVII:794213-794575 + 78 5.78e-10 ATTGCGGGCA CATGGCGCAGTTGGTAGCGCG CT chrXVI:856694-857161 + 30 1.12e-09 GATTCGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXI:219631-220113 + 78 1.12e-09 AAATAGGGCG TGTGGCGTAGTCGGTAGCGCG CT chrIV:409945-410789 + 67 1.12e-09 ATATTGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXVI:769031-769508 - 58 2.51e-09 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrVII:115331-115721 + 17 2.51e-09 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXV:340173-340596 - 12 3.05e-09 ATCTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrV:492191-492562 - 73 3.05e-09 TATTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrIV:619740-620274 - 59 3.05e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXV:353894-354359 - 12 6.34e-09 TTACTGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXV:113582-113997 + 68 6.34e-09 ATTTAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXIV:104572-105048 + 50 6.34e-09 TCTCAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrX:58980-59393 - 11 6.34e-09 TAGAAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrII:266168-266676 + 11 6.34e-09 AAACTGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXIV:602104-602588 + 21 7.55e-09 ACAATGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrX:414771-415179 + 46 8.96e-09 AATTAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrV:435572-436036 - 45 8.96e-09 TAAGAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:1201510-1202096 + 2 8.96e-09 T GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIII:151045-151588 - 65 8.96e-09 AAAGAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXII:605144-605643 - 64 1.06e-08 AAAATGCTCG TGTAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrXIV:726024-726345 - 58 2.35e-08 TCTTTGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXII:962826-963277 - 29 2.35e-08 TCGACGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrX:424261-424734 - 43 2.35e-08 AAGATGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrIV:519657-519909 + 15 2.35e-08 TTTACGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXIV:374588-375117 + 72 5.57e-08 AATAAGCGGA CTTAGCTCAGTTGGGAGAGCG CCAGACTG chrXIV:632399-632836 + 37 6.37e-08 AAAGTGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrIII:127574-127921 + 24 6.37e-08 AAAATGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXVI:622311-622874 - 64 1.07e-07 GATATGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:358267-358770 - 76 1.07e-07 CGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:237752-238149 - 14 1.07e-07 AGTAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXV:976269-976626 + 29 3.77e-07 TGTGCGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrXIII:572655-573168 - 69 3.77e-07 AGATAGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrIV:1175579-1176070 + 60 3.77e-07 ACAAAGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrIII:83-1057 - 27 4.18e-07 TAGGGTAAGC GGTAGTGGAGTTGGATACGGG TAATTGGAGG chrXI:307897-308453 - 67 4.62e-07 TAAGTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrX:378139-378571 + 60 4.62e-07 TAATAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:823337-823736 + 1 4.62e-07 . CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:438466-438962 + 41 4.62e-07 AATTAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:168241-169360 + 50 6.21e-07 AGTCACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrX:542766-543271 - 51 6.21e-07 AAATACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrX:353998-354501 + 50 6.21e-07 TATCACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVI:167239-167682 + 32 6.21e-07 AACGACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXV:710125-710352 + 18 7.51e-07 TTAGCAGCGC CGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrX:517689-518104 - 13 7.51e-07 AGTTAAGCGC CGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrIII:149722-150194 + 17 7.51e-07 TGTTGAGCGC CGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrVII:1003986-1004425 + 66 1.08e-06 GGTTTGCCTC CTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrVII:661500-661970 + 69 1.08e-06 AATTTGCCTC CTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrXVI:571987-572607 + 27 1.17e-06 ACTTCGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:226450-226935 - 14 1.17e-06 ATTCAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrV:61715-62152 - 52 1.17e-06 AGTAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIII:142365-143172 - 28 1.17e-06 TACTAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXIII:379035-379676 - 78 1.39e-06 GC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrXI:302703-303236 + 4 1.39e-06 AGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrVII:878513-879091 - 38 1.39e-06 AAGATGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrVII:287159-287683 - 59 1.39e-06 AAGATGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrVII:422704-423514 + 38 1.51e-06 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:205302-205794 + 28 1.51e-06 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXVI:435634-436207 - 69 2.24e-06 CAAAAGCTCG TATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrXIII:195948-196303 - 70 2.24e-06 CACAAGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrII:642814-643259 - 67 2.24e-06 AGAAAGCTCG TATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrXIV:96044-96527 - 52 3.01e-06 CACATGGGCG GTTAGTGTAGTGGTTATCATC CCACCCTTCC chrVII:779378-779923 + 21 3.01e-06 ACCCCGGGCG GTTAGTGTAGTGGTTATCATC CCACCCTTCC chrV:130879-131403 - 37 3.47e-06 TAAGAGGTTT TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIV:802561-803049 - 22 3.47e-06 TTGTCGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIII:168109-168561 - 62 3.47e-06 GTCCTGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrII:350589-351141 + 17 3.47e-06 AAAAGGGTTT TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrXII:902293-904515 - 2 3.71e-06 AGGAGGTGTA GGTGGTGTAGGTGGTGCAGCT G chrXIII:463321-463872 + 13 4.54e-06 ATTTGTCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrX:374205-374826 - 5 4.54e-06 TTTCTTCCGT GATAGTTTAATGGTCAGAATG GGCG chrX:204548-204953 + 40 4.54e-06 AAAAATCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrVII:544316-544886 - 72 4.54e-06 TCTTCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrII:405641-406294 + 48 4.54e-06 TTTCTTCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrIV:1300820-1302497 + 62 5.17e-06 GAGAGCTGTC GGTGGTGAAGTCGGTGCTTCC GCCGCCTTGG chrXIII:131607-132098 - 69 6.62e-06 ATTTAGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrVIII:126818-127502 - 72 9.36e-06 AACCAAAG CGTGACCAAATGGGTGAGACT TGGAACCTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTRGCBYAGTKGKWARRGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:259018-259393 2.9e-10 58_[-2]_21 chrXII:167774-168278 2.9e-10 23_[-2]_56 chrIV:437538-437999 2.9e-10 58_[+2]_21 chrXII:214759-215066 5.8e-10 67_[-2]_12 chrVII:794213-794575 5.8e-10 77_[+2]_2 chrXVI:856694-857161 1.1e-09 29_[+2]_50 chrXI:219631-220113 1.1e-09 77_[+2]_2 chrIV:409945-410789 1.1e-09 66_[+2]_13 chrXVI:769031-769508 2.5e-09 57_[-2]_22 chrVII:115331-115721 2.5e-09 16_[+2]_63 chrXV:340173-340596 3e-09 11_[-2]_68 chrV:492191-492562 3e-09 72_[-2]_7 chrIV:619740-620274 3e-09 58_[-2]_21 chrXV:353894-354359 6.3e-09 11_[-2]_68 chrXV:113582-113997 6.3e-09 67_[+2]_12 chrXIV:104572-105048 6.3e-09 49_[+2]_30 chrX:58980-59393 6.3e-09 10_[-2]_69 chrII:266168-266676 6.3e-09 10_[+2]_69 chrXIV:602104-602588 7.5e-09 20_[+2]_59 chrX:414771-415179 9e-09 45_[+2]_34 chrV:435572-436036 9e-09 44_[-2]_35 chrIV:1201510-1202096 9e-09 1_[+2]_78 chrIII:151045-151588 9e-09 64_[-2]_15 chrXII:605144-605643 1.1e-08 63_[-2]_16 chrXIV:726024-726345 2.3e-08 57_[-2]_22 chrXII:962826-963277 2.3e-08 28_[-2]_51 chrX:424261-424734 2.3e-08 42_[-2]_37 chrIV:519657-519909 2.3e-08 14_[+2]_65 chrXIV:374588-375117 5.6e-08 71_[+2]_8 chrXIV:632399-632836 6.4e-08 36_[+2]_43 chrIII:127574-127921 6.4e-08 23_[+2]_56 chrXVI:622311-622874 1.1e-07 63_[-2]_16 chrVIII:358267-358770 1.1e-07 75_[-2]_4 chrVIII:237752-238149 1.1e-07 13_[-2]_66 chrXV:976269-976626 3.8e-07 28_[+2]_51 chrXIII:572655-573168 3.8e-07 68_[-2]_11 chrIV:1175579-1176070 3.8e-07 59_[+2]_20 chrIII:83-1057 4.2e-07 26_[-2]_53 chrXI:307897-308453 4.6e-07 66_[-2]_13 chrX:378139-378571 4.6e-07 59_[+2]_20 chrVII:823337-823736 4.6e-07 [+2]_79 chrV:438466-438962 4.6e-07 40_[+2]_39 chrXIII:168241-169360 6.2e-07 49_[+2]_30 chrX:542766-543271 6.2e-07 50_[-2]_29 chrX:353998-354501 6.2e-07 49_[+2]_30 chrVI:167239-167682 6.2e-07 31_[+2]_48 chrXV:710125-710352 7.5e-07 17_[+2]_62 chrX:517689-518104 7.5e-07 12_[-2]_67 chrIII:149722-150194 7.5e-07 16_[+2]_63 chrVII:1003986-1004425 1.1e-06 65_[+2]_14 chrVII:661500-661970 1.1e-06 68_[+2]_11 chrXVI:571987-572607 1.2e-06 26_[+2]_53 chrXV:226450-226935 1.2e-06 13_[-2]_66 chrV:61715-62152 1.2e-06 51_[-2]_28 chrIII:142365-143172 1.2e-06 27_[-2]_52 chrXIII:379035-379676 1.4e-06 77_[-2]_2 chrXI:302703-303236 1.4e-06 3_[+2]_76 chrVII:878513-879091 1.4e-06 37_[-2]_42 chrVII:287159-287683 1.4e-06 58_[-2]_21 chrVII:422704-423514 1.5e-06 37_[+2]_42 chrVII:205302-205794 1.5e-06 27_[+2]_52 chrXVI:435634-436207 2.2e-06 68_[-2]_11 chrXIII:195948-196303 2.2e-06 69_[-2]_10 chrII:642814-643259 2.2e-06 66_[-2]_13 chrXIV:96044-96527 3e-06 51_[-2]_28 chrVII:779378-779923 3e-06 20_[+2]_59 chrV:130879-131403 3.5e-06 36_[-2]_43 chrIV:802561-803049 3.5e-06 21_[-2]_58 chrIII:168109-168561 3.5e-06 61_[-2]_18 chrII:350589-351141 3.5e-06 16_[+2]_63 chrXII:902293-904515 3.7e-06 1_[-2]_78 chrXIII:463321-463872 4.5e-06 12_[+2]_67 chrX:374205-374826 4.5e-06 4_[-2]_75 chrX:204548-204953 4.5e-06 39_[+2]_40 chrVII:544316-544886 4.5e-06 71_[-2]_8 chrII:405641-406294 4.5e-06 47_[+2]_32 chrIV:1300820-1302497 5.2e-06 61_[+2]_18 chrXIII:131607-132098 6.6e-06 68_[-2]_11 chrVIII:126818-127502 9.4e-06 71_[-2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTRGCBYAGTKGKWARRGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BDTRGCBYAGTKGKWARRGSS width=21 seqs=79 chrXIII:259018-259393 ( 59) CTTGGCCGAGTGGTTAAGGCG 1 chrXII:167774-168278 ( 24) CTTGGCCGAGTGGTTAAGGCG 1 chrIV:437538-437999 ( 59) CTTGGCCGAGTGGTTAAGGCG 1 chrXII:214759-215066 ( 68) CATGGCGCAGTTGGTAGCGCG 1 chrVII:794213-794575 ( 78) CATGGCGCAGTTGGTAGCGCG 1 chrXVI:856694-857161 ( 30) TGTGGCGTAGTCGGTAGCGCG 1 chrXI:219631-220113 ( 78) TGTGGCGTAGTCGGTAGCGCG 1 chrIV:409945-410789 ( 67) TGTGGCGTAGTCGGTAGCGCG 1 chrXVI:769031-769508 ( 58) GTTAGCTCAGTTGGTAGAGCG 1 chrVII:115331-115721 ( 17) GTTAGCTCAGTTGGTAGAGCG 1 chrXV:340173-340596 ( 12) CGTGGCCCAATGGTCACGGCG 1 chrV:492191-492562 ( 73) CGTGGCCCAATGGTCACGGCG 1 chrIV:619740-620274 ( 59) CGTGGCCCAATGGTCACGGCG 1 chrXV:353894-354359 ( 12) TATGGCCAAGTTGGTAAGGCG 1 chrXV:113582-113997 ( 68) TATGGCCAAGTTGGTAAGGCG 1 chrXIV:104572-105048 ( 50) TATGGCCAAGTTGGTAAGGCG 1 chrX:58980-59393 ( 11) TATGGCCAAGTTGGTAAGGCG 1 chrII:266168-266676 ( 11) TATGGCCAAGTTGGTAAGGCG 1 chrXIV:602104-602588 ( 21) CTTGGCCCAGTTGGTTAAGGC 1 chrX:414771-415179 ( 46) GTTGGCGCAATCGGTAGCGCG 1 chrV:435572-436036 ( 45) GTTGGCGCAATCGGTAGCGCG 1 chrIV:1201510-1202096 ( 2) GTTGGCGCAATCGGTAGCGCG 1 chrIII:151045-151588 ( 65) GTTGGCGCAATCGGTAGCGCG 1 chrXII:605144-605643 ( 64) TGTAGCTCAGTGGTTAGAGCT 1 chrXIV:726024-726345 ( 58) GTTGGCCGAGTGGTCTAAGGC 1 chrXII:962826-963277 ( 29) GTTGGCCGAGTGGTCTAAGGC 1 chrX:424261-424734 ( 43) GTTGGCCGAGTGGTCTAAGGC 1 chrIV:519657-519909 ( 15) GTTGGCCGAGTGGTCTAAGGC 1 chrXIV:374588-375117 ( 72) CTTAGCTCAGTTGGGAGAGCG 1 chrXIV:632399-632836 ( 37) CATGGCCAAGTTGGTTAAGGC 1 chrIII:127574-127921 ( 24) CATGGCCAAGTTGGTTAAGGC 1 chrXVI:622311-622874 ( 64) TTTAGCTCAGTTGGGAGAGCG 1 chrVIII:358267-358770 ( 76) TTTAGCTCAGTTGGGAGAGCG 1 chrVIII:237752-238149 ( 14) TTTAGCTCAGTTGGGAGAGCG 1 chrXV:976269-976626 ( 29) AGTAGCTCAGTAGGAAGAGCG 1 chrXIII:572655-573168 ( 69) AGTAGCTCAGTAGGAAGAGCG 1 chrIV:1175579-1176070 ( 60) AGTAGCTCAGTAGGAAGAGCG 1 chrIII:83-1057 ( 27) GGTAGTGGAGTTGGATACGGG 1 chrXI:307897-308453 ( 67) CGTGGTCTAGTCGGTTATGGC 1 chrX:378139-378571 ( 60) CGTGGTCTAGTCGGTTATGGC 1 chrVII:823337-823736 ( 1) CGTGGTCTAGTCGGTTATGGC 1 chrV:438466-438962 ( 41) CGTGGTCTAGTCGGTTATGGC 1 chrXIII:168241-169360 ( 50) GGTAGCCAAGTTGGTTTAAGG 1 chrX:542766-543271 ( 51) GGTAGCCAAGTTGGTTTAAGG 1 chrX:353998-354501 ( 50) GGTAGCCAAGTTGGTTTAAGG 1 chrVI:167239-167682 ( 32) GGTAGCCAAGTTGGTTTAAGG 1 chrXV:710125-710352 ( 18) CGTGGCGCAGTGGAAGCGCGC 1 chrX:517689-518104 ( 13) CGTGGCGCAGTGGAAGCGCGC 1 chrIII:149722-150194 ( 17) CGTGGCGCAGTGGAAGCGCGC 1 chrVII:1003986-1004425 ( 66) CTTAGCTTAGTGGTAGAGCGT 1 chrVII:661500-661970 ( 69) CTTAGCTTAGTGGTAGAGCGT 1 chrXVI:571987-572607 ( 27) AGTGGTTTAGTGGTAAAATCC 1 chrXV:226450-226935 ( 14) AGTGGTTTAGTGGTAAAATCC 1 chrV:61715-62152 ( 52) AGTGGTTTAGTGGTAAAATCC 1 chrIII:142365-143172 ( 28) AGTGGTTTAGTGGTAAAATCC 1 chrXIII:379035-379676 ( 78) GGTGGCTCAATGGTAGAGCTT 1 chrXI:302703-303236 ( 4) GGTGGCTCAATGGTAGAGCTT 1 chrVII:878513-879091 ( 38) GGTGGCTCAATGGTAGAGCTT 1 chrVII:287159-287683 ( 59) GGTGGCTCAATGGTAGAGCTT 1 chrVII:422704-423514 ( 38) TTTGGCCGAGCGGTCTAAGGC 1 chrVII:205302-205794 ( 28) TTTGGCCGAGCGGTCTAAGGC 1 chrXVI:435634-436207 ( 69) TATGGCGCAGTGGTAGCGCAG 1 chrXIII:195948-196303 ( 70) TGTGGTCTAGTGGTATGATTC 1 chrII:642814-643259 ( 67) TATGGCGCAGTGGTAGCGCAG 1 chrXIV:96044-96527 ( 52) GTTAGTGTAGTGGTTATCATC 1 chrVII:779378-779923 ( 21) GTTAGTGTAGTGGTTATCATC 1 chrV:130879-131403 ( 37) TATAGTGTAGTGGTTATCACT 1 chrIV:802561-803049 ( 22) TATAGTGTAGTGGTTATCACT 1 chrIII:168109-168561 ( 62) TATAGTGTAGTGGTTATCACT 1 chrII:350589-351141 ( 17) TATAGTGTAGTGGTTATCACT 1 chrXII:902293-904515 ( 2) GGTGGTGTAGGTGGTGCAGCT 1 chrXIII:463321-463872 ( 13) GATAGTTTAATGGTCAGAATG 1 chrX:374205-374826 ( 5) GATAGTTTAATGGTCAGAATG 1 chrX:204548-204953 ( 40) GATAGTTTAATGGTCAGAATG 1 chrVII:544316-544886 ( 72) GATAGTTTAATGGTCAGAATG 1 chrII:405641-406294 ( 48) GATAGTTTAATGGTCAGAATG 1 chrIV:1300820-1302497 ( 62) GGTGGTGAAGTCGGTGCTTCC 1 chrXIII:131607-132098 ( 69) CGTGGCGTAATGGCAACGCGT 1 chrVIII:126818-127502 ( 72) CGTGACCAAATGGGTGAGACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTRGCBYAGTKGKWARRGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 41680 bayes= 8.45788 E= 7.8e-132 -178 57 85 -19 -26 -1295 118 0 -1295 -1295 -1295 172 22 -1295 172 -1295 -458 -1295 233 -1295 -1295 185 -1295 -6 -1295 95 63 6 -88 90 -63 17 172 -1295 -1295 -1295 -41 -1295 198 -1295 -1295 -295 -395 166 -300 -37 144 -13 -1295 -1295 235 -1295 -300 -395 129 62 -19 -15 -195 74 94 -1295 -15 -34 46 -49 69 -126 50 5 63 -226 -58 -37 154 -200 -358 140 63 -100 -1295 63 140 -78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTRGCBYAGTKGKWARRGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 79 E= 7.8e-132 0.088608 0.291139 0.354430 0.265823 0.253165 0.000000 0.443038 0.303797 0.000000 0.000000 0.000000 1.000000 0.354430 0.000000 0.645570 0.000000 0.012658 0.000000 0.987342 0.000000 0.000000 0.708861 0.000000 0.291139 0.000000 0.379747 0.303797 0.316456 0.164557 0.367089 0.126582 0.341772 1.000000 0.000000 0.000000 0.000000 0.227848 0.000000 0.772152 0.000000 0.000000 0.025316 0.012658 0.962025 0.037975 0.151899 0.531646 0.278481 0.000000 0.000000 1.000000 0.000000 0.037975 0.012658 0.481013 0.468354 0.265823 0.177215 0.050633 0.506329 0.582278 0.000000 0.177215 0.240506 0.417722 0.139241 0.316456 0.126582 0.430380 0.202532 0.303797 0.063291 0.202532 0.151899 0.569620 0.075949 0.025316 0.518987 0.303797 0.151899 0.000000 0.303797 0.518987 0.177215 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTRGCBYAGTKGKWARRGSS MEME-2 regular expression -------------------------------------------------------------------------------- [GCT][GTA]T[GA]G[CT][CTG][CT]A[GA]T[GT]G[GT][TA][AT][AG][AGC][GA][CG][GC] -------------------------------------------------------------------------------- Time 499.04 secs. ******************************************************************************** ******************************************************************************** MOTIF RWGRTGTAYGGRTGT MEME-3 width = 15 sites = 57 llr = 654 E-value = 2.1e-041 ******************************************************************************** -------------------------------------------------------------------------------- Motif RWGRTGTAYGGRTGT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2324:::71::4::1 pos.-specific C 11::::315:::1:2 probability G 52762a:2:9a6182 matrix T 241:8:7:41::926 bits 2.3 * 2.1 * * 1.9 * ** 1.6 * ** Relative 1.4 * ** * Entropy 1.2 **** ***** (16.6 bits) 0.9 ****** ***** 0.7 ************ 0.5 ************* 0.2 * ************* 0.0 --------------- Multilevel GTGGTGTACGGGTGT consensus AA A CGT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RWGRTGTAYGGRTGT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrXV:639159-639449 + 61 3.37e-10 GGCTGTATGT GTGGTGTACGGGTGT AAAAGTAGTC chrXI:614207-614450 - 25 2.07e-09 CCTTCACCTT GTGGTGTGCGGGTGT TGCAGTCATT chrIV:7-337 - 15 7.06e-09 GGGGTAGTGT GTGGTGTGTGGGTGT GGGTGTGGTG chrIV:221700-222601 + 33 1.82e-08 AAATGAGATA AGGGTGTACGGGTGT GGTAACCGTC chrI:81845-82397 + 37 3.96e-08 TCATCTAGCG GAGGTGCACGGATGT ACCAACAGTT chrVIII:382893-383383 + 11 9.31e-08 ATTTATTTTC ATGATGTATGGGTGT CTCGGATGTT chrIV:538914-539289 - 54 9.31e-08 AGGATTGAAT GAGGGGTGTGGGTGT GATAATTCAT chrXVI:279961-280270 - 49 1.10e-07 TCGGAATTGT GAGGTGCACGGATGC GGACTTCTCC chrX:545375-545723 + 56 1.30e-07 ACGTGCGAGT GCGGTGCATGGGTGG CTGTCTTTTC chrV:110374-111072 - 5 2.05e-07 GTTGTCTATT GAGGTGTCTGGGTGT GTTT chrXIII:296734-297183 - 58 2.38e-07 AAAAAAGTTC TAGATGTATGGGTGT GCGGGTAATG chrXV:1070821-1071234 + 31 2.69e-07 TGCATGAGGT ATGATGCACGGGTGC ACTGTTAAAA chrIV:1259541-1259956 + 34 3.10e-07 TTTCATCATG GAGGTGCATGGGTTT CCTTCTGGTA chrXIII:731968-732505 - 20 4.09e-07 CCACACATGC GCGATGTGCGGATGT ATTATGTCTT chrVIII:125869-126342 - 47 4.09e-07 TGTAAAGATG TAGGTGTACGGATGC ATTAACGTCT chrVII:291602-291947 - 72 5.26e-07 TCTCGCGCGT GTGGTGTGTGGGTTC TTTAACATGT chrIX:68124-68520 - 78 5.98e-07 ACATCTTA GTAATGTACGGATGT AATAAACTCA chrIV:1359344-1359881 - 34 5.98e-07 GCATGGGTGC GTAATGTACGGATGT TTAATGTCTT chrXII:932061-932545 + 20 7.63e-07 TACAGATGTA CGGATGTACGGATGT ATACTATGTA chrXVI:281595-281981 - 28 8.63e-07 GTAATCAAAG GAAGTGTAAGGGTGT AAAGAGGTAA chrXV:1003991-1004436 + 82 9.66e-07 CCGTATGTTA TGGGTGCAAGGGTGT TTTT chrVIII:296824-297280 - 55 9.66e-07 AGAGCATGCA GTGATGTACTGGTGG ACGAAATTGT chrXV:1025678-1026073 - 51 1.07e-06 CCAATTACAC GTGATGAATGGGTGT TCAGCATATG chrXV:968113-968457 + 32 1.07e-06 TCAAAAGCGT GGGGTGCGTGGGCGT GCGCAGCTCG chrXV:779637-780134 - 68 1.07e-06 TAAAAGGTAT GTGGGGTATGGGGGG GTGAAAAAAT chrXIII:225303-225749 - 56 1.07e-06 ATGTACGGAT GTAATGCACGGATGT TAAACCGGAA chrV:396149-396593 - 58 1.21e-06 TGGGTTCACA AAAGTGTACGGATGT ATACAACAGG chrXI:67710-68099 - 59 1.35e-06 AAAATTTGAT GCGGTGCACGGATTT CAGCACGGGT chrIV:321609-321997 - 46 1.51e-06 AAAATAAAGA TTGGTGTACGGAGGT AAAGGTATGA chrXI:382144-382469 - 49 1.67e-06 TGTGTTGGGT GTGATGTCCGGATGC AACAGCAGCA chrXII:1028181-1028614 - 51 1.87e-06 CCCATACATT TTGGTGCATGGGTGA TATTTTGTCT chrIV:411210-411662 - 49 1.87e-06 CTTTGGGTGC CCGGGGTGTGGGTGT TTGATTTGTT chrXV:79690-80165 + 69 2.07e-06 TCACTTATTT AATATGTACGGGTGT TTACATGGAG chrXIV:444171-445052 + 58 2.53e-06 TACGGATTTA AAGAGGTACGGATGG AGACCGTAGA chrXIII:302836-303088 + 51 2.53e-06 ATCCAGGGGT GTGGGGTGTGGGCGC CCATATGCGC chrVIII:505769-506275 + 27 2.53e-06 ATGTCTGGGT GAAATGTATGGATGC ATAATTGTCT chrV:140202-141279 + 20 3.09e-06 TGCATGGGGT ATGGGGTATGGGGGC ATCATCGATT chrII:165055-165456 - 52 4.50e-06 GTGCTCTAAC GCGGTGTATGGGTTA GATTCGTAAT chrXVI:378653-379039 + 42 4.93e-06 AATGAGAACT CGAATGTACGGATGT TTTCTCTGAA chrXV:216274-216714 - 15 4.93e-06 CCTGGGTTGA GGAAGGCGCGGGTGC TCGGATGTTC chrIX:254193-254598 + 11 4.93e-06 CGCGGCAATT AGAATGTGTGGGTGC GGAAGCTCGC chrXI:618724-619318 + 38 5.40e-06 ACAAATCTGT TAGAGGCACGGATGG AAATAGTATT chrV:53501-53957 - 40 5.40e-06 CCGAACACCA AATATGTGTGGGTGT CAAACAAAGA chrIV:1074892-1075782 - 1 5.40e-06 ACCTCTTCAT GAGGGGTAAGGGTTG chrXII:924120-925028 + 56 5.89e-06 CTTTTCAAAA ATGGTGCACGGGCTT TCTGTATATT chrXII:1012125-1013264 - 39 6.97e-06 CAAAGCCTTG ATGATGTGAGGATGG CAATGGCCCT chrXII:673554-674541 - 57 8.93e-06 GGATCAATAT CTGGTGCATGGGTCT AAAAAAATTA chrX:651215-651639 - 44 1.05e-05 AGAATAATTA TGGGTATATGGGTGT TGTTGTATAA chrIX:316027-316618 - 80 1.13e-05 TGTAAA ATAATGTATGGGTTC TAGTCTGAAA chrIX:248481-249079 - 33 1.42e-05 CCCACGACTC GCGGTGTAATGATGG CATGAAATCA chrXI:158197-158690 - 7 1.52e-05 ATTTATTTCC AGTGTGCACGGGTTG AAATAA chrII:59836-61748 + 11 1.64e-05 TAGTTATATA TAGGTGTGTTGGTTT TGTATTGCTT chrIV:307974-308460 - 57 2.63e-05 ATTGCCTACA TATATGTAAGGATGT AACAGGAAAT chrIV:1489367-1489852 - 82 3.00e-05 ACGC TTTGGGTGCTGGTGT CTTCGGTGCT chrII:167651-168550 - 2 3.00e-05 TCCGTTTTCC AGGAGGTACTGGTGA A chrXV:514307-514714 + 66 3.39e-05 CCAGTCACGC CGGATGACTGGGTGT AGATAAATAG chrXII:369676-370083 + 61 4.05e-05 TGGGCACCAG GTGGTGTATTGAGTG ATAACGTCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RWGRTGTAYGGRTGT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:639159-639449 3.4e-10 60_[+3]_25 chrXI:614207-614450 2.1e-09 24_[-3]_61 chrIV:7-337 7.1e-09 14_[-3]_71 chrIV:221700-222601 1.8e-08 32_[+3]_53 chrI:81845-82397 4e-08 36_[+3]_49 chrVIII:382893-383383 9.3e-08 10_[+3]_75 chrIV:538914-539289 9.3e-08 53_[-3]_32 chrXVI:279961-280270 1.1e-07 48_[-3]_37 chrX:545375-545723 1.3e-07 55_[+3]_30 chrV:110374-111072 2.1e-07 4_[-3]_81 chrXIII:296734-297183 2.4e-07 57_[-3]_28 chrXV:1070821-1071234 2.7e-07 30_[+3]_55 chrIV:1259541-1259956 3.1e-07 33_[+3]_52 chrXIII:731968-732505 4.1e-07 19_[-3]_66 chrVIII:125869-126342 4.1e-07 46_[-3]_39 chrVII:291602-291947 5.3e-07 71_[-3]_14 chrIX:68124-68520 6e-07 77_[-3]_8 chrIV:1359344-1359881 6e-07 33_[-3]_52 chrXII:932061-932545 7.6e-07 19_[+3]_66 chrXVI:281595-281981 8.6e-07 27_[-3]_58 chrXV:1003991-1004436 9.7e-07 81_[+3]_4 chrVIII:296824-297280 9.7e-07 54_[-3]_31 chrXV:1025678-1026073 1.1e-06 50_[-3]_35 chrXV:968113-968457 1.1e-06 31_[+3]_54 chrXV:779637-780134 1.1e-06 67_[-3]_18 chrXIII:225303-225749 1.1e-06 55_[-3]_30 chrV:396149-396593 1.2e-06 57_[-3]_28 chrXI:67710-68099 1.4e-06 58_[-3]_27 chrIV:321609-321997 1.5e-06 45_[-3]_40 chrXI:382144-382469 1.7e-06 48_[-3]_37 chrXII:1028181-1028614 1.9e-06 50_[-3]_35 chrIV:411210-411662 1.9e-06 48_[-3]_37 chrXV:79690-80165 2.1e-06 68_[+3]_17 chrXIV:444171-445052 2.5e-06 57_[+3]_28 chrXIII:302836-303088 2.5e-06 50_[+3]_35 chrVIII:505769-506275 2.5e-06 26_[+3]_59 chrV:140202-141279 3.1e-06 19_[+3]_66 chrII:165055-165456 4.5e-06 51_[-3]_34 chrXVI:378653-379039 4.9e-06 41_[+3]_44 chrXV:216274-216714 4.9e-06 14_[-3]_71 chrIX:254193-254598 4.9e-06 10_[+3]_75 chrXI:618724-619318 5.4e-06 37_[+3]_48 chrV:53501-53957 5.4e-06 39_[-3]_46 chrIV:1074892-1075782 5.4e-06 [-3]_85 chrXII:924120-925028 5.9e-06 55_[+3]_30 chrXII:1012125-1013264 7e-06 38_[-3]_47 chrXII:673554-674541 8.9e-06 56_[-3]_29 chrX:651215-651639 1e-05 43_[-3]_42 chrIX:316027-316618 1.1e-05 79_[-3]_6 chrIX:248481-249079 1.4e-05 32_[-3]_53 chrXI:158197-158690 1.5e-05 6_[-3]_79 chrII:59836-61748 1.6e-05 10_[+3]_75 chrIV:307974-308460 2.6e-05 56_[-3]_29 chrIV:1489367-1489852 3e-05 81_[-3]_4 chrII:167651-168550 3e-05 1_[-3]_84 chrXV:514307-514714 3.4e-05 65_[+3]_20 chrXII:369676-370083 4.1e-05 60_[+3]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RWGRTGTAYGGRTGT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RWGRTGTAYGGRTGT width=15 seqs=57 chrXV:639159-639449 ( 61) GTGGTGTACGGGTGT 1 chrXI:614207-614450 ( 25) GTGGTGTGCGGGTGT 1 chrIV:7-337 ( 15) GTGGTGTGTGGGTGT 1 chrIV:221700-222601 ( 33) AGGGTGTACGGGTGT 1 chrI:81845-82397 ( 37) GAGGTGCACGGATGT 1 chrVIII:382893-383383 ( 11) ATGATGTATGGGTGT 1 chrIV:538914-539289 ( 54) GAGGGGTGTGGGTGT 1 chrXVI:279961-280270 ( 49) GAGGTGCACGGATGC 1 chrX:545375-545723 ( 56) GCGGTGCATGGGTGG 1 chrV:110374-111072 ( 5) GAGGTGTCTGGGTGT 1 chrXIII:296734-297183 ( 58) TAGATGTATGGGTGT 1 chrXV:1070821-1071234 ( 31) ATGATGCACGGGTGC 1 chrIV:1259541-1259956 ( 34) GAGGTGCATGGGTTT 1 chrXIII:731968-732505 ( 20) GCGATGTGCGGATGT 1 chrVIII:125869-126342 ( 47) TAGGTGTACGGATGC 1 chrVII:291602-291947 ( 72) GTGGTGTGTGGGTTC 1 chrIX:68124-68520 ( 78) GTAATGTACGGATGT 1 chrIV:1359344-1359881 ( 34) GTAATGTACGGATGT 1 chrXII:932061-932545 ( 20) CGGATGTACGGATGT 1 chrXVI:281595-281981 ( 28) GAAGTGTAAGGGTGT 1 chrXV:1003991-1004436 ( 82) TGGGTGCAAGGGTGT 1 chrVIII:296824-297280 ( 55) GTGATGTACTGGTGG 1 chrXV:1025678-1026073 ( 51) GTGATGAATGGGTGT 1 chrXV:968113-968457 ( 32) GGGGTGCGTGGGCGT 1 chrXV:779637-780134 ( 68) GTGGGGTATGGGGGG 1 chrXIII:225303-225749 ( 56) GTAATGCACGGATGT 1 chrV:396149-396593 ( 58) AAAGTGTACGGATGT 1 chrXI:67710-68099 ( 59) GCGGTGCACGGATTT 1 chrIV:321609-321997 ( 46) TTGGTGTACGGAGGT 1 chrXI:382144-382469 ( 49) GTGATGTCCGGATGC 1 chrXII:1028181-1028614 ( 51) TTGGTGCATGGGTGA 1 chrIV:411210-411662 ( 49) CCGGGGTGTGGGTGT 1 chrXV:79690-80165 ( 69) AATATGTACGGGTGT 1 chrXIV:444171-445052 ( 58) AAGAGGTACGGATGG 1 chrXIII:302836-303088 ( 51) GTGGGGTGTGGGCGC 1 chrVIII:505769-506275 ( 27) GAAATGTATGGATGC 1 chrV:140202-141279 ( 20) ATGGGGTATGGGGGC 1 chrII:165055-165456 ( 52) GCGGTGTATGGGTTA 1 chrXVI:378653-379039 ( 42) CGAATGTACGGATGT 1 chrXV:216274-216714 ( 15) GGAAGGCGCGGGTGC 1 chrIX:254193-254598 ( 11) AGAATGTGTGGGTGC 1 chrXI:618724-619318 ( 38) TAGAGGCACGGATGG 1 chrV:53501-53957 ( 40) AATATGTGTGGGTGT 1 chrIV:1074892-1075782 ( 1) GAGGGGTAAGGGTTG 1 chrXII:924120-925028 ( 56) ATGGTGCACGGGCTT 1 chrXII:1012125-1013264 ( 39) ATGATGTGAGGATGG 1 chrXII:673554-674541 ( 57) CTGGTGCATGGGTCT 1 chrX:651215-651639 ( 44) TGGGTATATGGGTGT 1 chrIX:316027-316618 ( 80) ATAATGTATGGGTTC 1 chrIX:248481-249079 ( 33) GCGGTGTAATGATGG 1 chrXI:158197-158690 ( 7) AGTGTGCACGGGTTG 1 chrII:59836-61748 ( 11) TAGGTGTGTTGGTTT 1 chrIV:307974-308460 ( 57) TATATGTAAGGATGT 1 chrIV:1489367-1489852 ( 82) TTTGGGTGCTGGTGT 1 chrII:167651-168550 ( 2) AGGAGGTACTGGTGA 1 chrXV:514307-514714 ( 66) CGGATGACTGGGTGT 1 chrXII:369676-370083 ( 61) GTGGTGTATTGAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RWGRTGTAYGGRTGT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 44806 bayes= 9.4813 E= 2.1e-041 -31 -116 132 -79 -3 -90 -2 41 -79 -1248 191 -179 47 -1248 156 -1248 -1248 -1248 -2 141 -411 -1248 232 -1248 -311 42 -1248 121 121 -190 32 -1248 -153 122 -1248 53 -1248 -1248 219 -153 -1248 -1248 235 -1248 21 -1248 173 -1248 -1248 -190 -148 153 -1248 -348 204 -79 -253 -2 -16 93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RWGRTGTAYGGRTGT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 57 E= 2.1e-041 0.245614 0.087719 0.491228 0.175439 0.298246 0.105263 0.192982 0.403509 0.175439 0.000000 0.736842 0.087719 0.421053 0.000000 0.578947 0.000000 0.000000 0.000000 0.192982 0.807018 0.017544 0.000000 0.982456 0.000000 0.035088 0.263158 0.000000 0.701754 0.701754 0.052632 0.245614 0.000000 0.105263 0.456140 0.000000 0.438596 0.000000 0.000000 0.894737 0.105263 0.000000 0.000000 1.000000 0.000000 0.350877 0.000000 0.649123 0.000000 0.000000 0.052632 0.070175 0.877193 0.000000 0.017544 0.807018 0.175439 0.052632 0.192982 0.175439 0.578947 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RWGRTGTAYGGRTGT MEME-3 regular expression -------------------------------------------------------------------------------- [GA][TA]G[GA]TG[TC][AG][CT]GG[GA]TGT -------------------------------------------------------------------------------- Time 730.70 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71816-73261 3.28e-01 100 chrI:81845-82397 7.95e-05 36_[+3(3.96e-08)]_49 chrI:138875-139361 5.51e-01 100 chrI:142365-143166 2.12e-01 100 chrI:166172-166663 7.76e-01 100 chrI:180927-181508 6.18e-06 65_[-1(2.27e-09)]_5 chrI:182077-183182 2.85e-01 100 chrII:9367-10024 5.91e-01 100 chrII:35795-36571 1.51e-01 100 chrII:44459-45369 6.26e-01 100 chrII:59836-61748 3.37e-02 10_[+3(1.64e-05)]_75 chrII:88916-89169 3.16e-01 100 chrII:89584-90215 6.63e-01 100 chrII:165055-165456 5.30e-03 51_[-3(4.50e-06)]_34 chrII:167651-168550 2.83e-02 1_[-3(3.00e-05)]_84 chrII:181025-181868 8.78e-01 100 chrII:197264-197870 1.14e-08 28_[-1(6.92e-13)]_42 chrII:226976-227363 2.61e-06 15_[-1(3.37e-10)]_55 chrII:266168-266676 4.23e-12 10_[+2(6.34e-09)]_25_[-1(5.57e-11)]_\ 14 chrII:326395-327088 9.36e-01 100 chrII:332187-332783 9.99e-01 100 chrII:347412-348137 5.23e-02 100 chrII:350589-351141 6.07e-10 16_[+2(3.47e-06)]_24_[-1(1.68e-10)]_\ 9 chrII:393133-394795 8.42e-01 100 chrII:405641-406294 2.86e-09 10_[-1(1.33e-10)]_7_[+2(4.54e-06)]_\ 32 chrII:408668-408950 4.82e-01 100 chrII:415479-416661 1.40e-01 100 chrII:592274-593400 7.00e-01 100 chrII:595002-595493 5.88e-01 100 chrII:604027-606168 8.28e-01 100 chrII:642814-643259 1.55e-09 12_[+1(1.49e-10)]_24_[-2(2.24e-06)]_\ 13 chrII:644888-645412 3.11e-01 100 chrIII:83-1057 1.21e-04 26_[-2(4.18e-07)]_53 chrIII:78502-78805 7.29e-01 100 chrIII:82372-83108 9.07e-01 100 chrIII:90858-91123 4.76e-06 10_[-1(2.27e-09)]_60 chrIII:107189-107802 6.92e-01 100 chrIII:123170-123816 8.72e-01 100 chrIII:127574-127921 3.50e-10 23_[+2(6.37e-08)]_26_[-1(1.86e-09)] chrIII:141957-142163 1.19e-03 36_[+1(6.06e-07)]_34 chrIII:142365-143172 5.95e-03 27_[-2(1.17e-06)]_52 chrIII:149722-150194 5.28e-07 16_[+2(7.51e-07)]_24_[-1(2.06e-07)]_\ 9 chrIII:151045-151588 3.49e-13 9_[+1(8.35e-12)]_25_[-2(8.96e-09)]_\ 15 chrIII:163450-164845 4.99e-01 100 chrIII:168109-168561 2.16e-09 7_[+1(3.78e-10)]_24_[-2(3.47e-06)]_\ 18 chrIII:177247-178789 5.25e-01 100 chrIII:227731-228498 5.19e-01 100 chrIII:295286-296004 8.44e-01 100 chrIII:315683-316591 5.93e-01 100 chrIV:7-337 8.12e-06 14_[-3(7.06e-09)]_71 chrIV:45189-45932 6.83e-01 100 chrIV:83439-83857 9.52e-01 100 chrIV:117135-118174 9.82e-01 100 chrIV:129742-131041 7.31e-01 100 chrIV:216557-218076 2.67e-05 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8.75e-01 100 chrXVI:794228-794846 8.68e-01 100 chrXVI:810580-811492 8.46e-01 100 chrXVI:818500-820060 8.80e-01 100 chrXVI:856694-857161 1.87e-06 29_[+2(1.12e-09)]_50 chrXVI:860136-860761 4.01e-07 29_[-1(7.17e-11)]_41 chrXVI:879465-880593 1.31e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************