# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--HSF1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--HSF1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--HSF1/seqs-shuffled
#   positives: 521 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--HSF1/seqs-centered (Sun Jan 19 11:29:17 PST 2020)
#   negatives: 521 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--HSF1/seqs-shuffled (Sun Jan 19 11:29:17 PST 2020)
#        host: kali.stanford.edu
#        when: Sun Jan 19 11:41:34 PST 2020

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.302 C 0.201 G 0.198 T 0.299


MOTIF TCGAACCB DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCGAACCB   VGGTTCGA         54          1   3.8e-016   1.2e-011
#         TCGAACCC   GGGTTCGA         24          0   4.5e-008   1.4e-003
#         TCGAACCG   CGGTTCGA         19          1   1.7e-005   5.3e-001
#         TCGAACCT   AGGTTCGA         11          0   4.6e-004   1.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 1.2e-011
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.444444 0.351852 0.203704


MOTIF CGGTAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CGGTAG     CTACCG         29          2   1.6e-007   5.0e-003
#           CGGTAG     CTACCG         29          2   1.6e-007   5.0e-003

letter-probability matrix: alength= 4 w= 6 nsites= 29 E= 5.0e-003
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GTATGGS DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GTATGGS    SCCATAC         21          0   3.9e-007   1.2e-002
#          GTATGGG    CCCATAC         13          0   1.1e-004   3.5e+000
#          GTATGGC    GCCATAC          8          0   3.8e-003   1.2e+002

letter-probability matrix: alength= 4 w= 7 nsites= 24 E= 1.2e-002
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.333333 0.666667 0.000000


MOTIF ATTTTTY DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     ATTTTTY    RAAAAAT        119         60   8.0e-007   2.4e-002
#          ATTTTTT    AAAAAAT         94         50   5.1e-005   1.6e+000
#          ATTTTTC    GAAAAAT         31         13   4.1e-003   1.2e+002

letter-probability matrix: alength= 4 w= 7 nsites= 133 E= 2.4e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.233083 0.000000 0.766917


MOTIF ACCACT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      ACCACT     AGTGGT         55         16   8.6e-007   2.6e-002
#           ACCACT     AGTGGT         55         16   8.6e-007   2.6e-002

letter-probability matrix: alength= 4 w= 6 nsites= 60 E= 2.6e-002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 20.91 seconds