******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--HAA1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71819-73263 1.0000 100 chrI:81681-82372 1.0000 100 chrI:138977-139360 1.0000 100 chrI:141643-141916 1.0000 100 chrI:142150-143487 1.0000 100 chrI:166173-166633 1.0000 100 chrI:180956-181479 1.0000 100 chrI:182156-183201 1.0000 100 chrII:9355-9988 1.0000 100 chrII:36243-36593 1.0000 100 chrII:44945-45348 1.0000 100 chrII:45669-46332 1.0000 100 chrII:59824-61288 1.0000 100 chrII:88958-90005 1.0000 100 chrII:165080-165446 1.0000 100 chrII:167893-168195 1.0000 100 chrII:181316-181724 1.0000 100 chrII:197191-197820 1.0000 100 chrII:226979-227334 1.0000 100 chrII:266185-266715 1.0000 100 chrII:326545-327133 1.0000 100 chrII:332161-333075 1.0000 100 chrII:347402-347930 1.0000 100 chrII:350607-351041 1.0000 100 chrII:405659-406229 1.0000 100 chrII:415579-416113 1.0000 100 chrII:444757-445210 1.0000 100 chrII:476901-477745 1.0000 100 chrII:592285-593432 1.0000 100 chrII:603837-606113 1.0000 100 chrII:642862-643246 1.0000 100 chrII:644963-645418 1.0000 100 chrIII:74-1023 1.0000 100 chrIII:81663-82700 1.0000 100 chrIII:83038-83209 1.0000 100 chrIII:90862-91080 1.0000 100 chrIII:123353-123802 1.0000 100 chrIII:127584-127884 1.0000 100 chrIII:137775-138986 1.0000 100 chrIII:142485-142982 1.0000 100 chrIII:149573-150232 1.0000 100 chrIII:151130-151577 1.0000 100 chrIII:162534-163252 1.0000 100 chrIII:163478-163885 1.0000 100 chrIII:168018-168534 1.0000 100 chrIII:177103-178726 1.0000 100 chrIII:227775-228212 1.0000 100 chrIII:262739-263134 1.0000 100 chrIII:295310-296034 1.0000 100 chrIII:315613-316001 1.0000 100 chrIV:83436-83821 1.0000 100 chrIV:117159-117926 1.0000 100 chrIV:129929-130972 1.0000 100 chrIV:217088-217514 1.0000 100 chrIV:220563-220743 1.0000 100 chrIV:221143-222313 1.0000 100 chrIV:229553-230703 1.0000 100 chrIV:308027-309373 1.0000 100 chrIV:321701-321943 1.0000 100 chrIV:338852-341939 1.0000 100 chrIV:354226-356883 1.0000 100 chrIV:358025-358492 1.0000 100 chrIV:359208-359781 1.0000 100 chrIV:382027-384826 1.0000 100 chrIV:410187-410790 1.0000 100 chrIV:411136-411997 1.0000 100 chrIV:434101-435133 1.0000 100 chrIV:437536-439015 1.0000 100 chrIV:488474-489105 1.0000 100 chrIV:490947-491237 1.0000 100 chrIV:519656-520248 1.0000 100 chrIV:520684-521108 1.0000 100 chrIV:525453-527471 1.0000 100 chrIV:568479-569209 1.0000 100 chrIV:578924-580682 1.0000 100 chrIV:619713-620218 1.0000 100 chrIV:645011-645376 1.0000 100 chrIV:667652-668207 1.0000 100 chrIV:758798-759646 1.0000 100 chrIV:802571-803012 1.0000 100 chrIV:835769-836257 1.0000 100 chrIV:884259-884623 1.0000 100 chrIV:915120-916162 1.0000 100 chrIV:946152-946590 1.0000 100 chrIV:974359-975127 1.0000 100 chrIV:980740-981169 1.0000 100 chrIV:992685-993184 1.0000 100 chrIV:1013760-1013924 1.0000 100 chrIV:1016962-1017489 1.0000 100 chrIV:1075305-1075743 1.0000 100 chrIV:1094915-1095673 1.0000 100 chrIV:1150725-1151173 1.0000 100 chrIV:1175595-1176093 1.0000 100 chrIV:1201514-1202002 1.0000 100 chrIV:1233398-1234266 1.0000 100 chrIV:1236451-1238005 1.0000 100 chrIV:1256885-1257282 1.0000 100 chrIV:1300066-1300357 1.0000 100 chrIV:1300558-1301320 1.0000 100 chrIV:1305114-1305796 1.0000 100 chrIV:1352143-1353412 1.0000 100 chrIV:1354577-1355553 1.0000 100 chrIV:1355763-1356005 1.0000 100 chrIV:1359335-1361233 1.0000 100 chrIV:1401019-1402056 1.0000 100 chrIV:1450605-1451207 1.0000 100 chrIV:1461492-1461839 1.0000 100 chrIV:1489090-1489907 1.0000 100 chrIX:68265-68480 1.0000 100 chrIX:68675-68976 1.0000 100 chrIX:99644-100123 1.0000 100 chrIX:174564-175908 1.0000 100 chrIX:183289-183700 1.0000 100 chrIX:197256-198010 1.0000 100 chrIX:210511-211278 1.0000 100 chrIX:248572-248998 1.0000 100 chrIX:254236-254541 1.0000 100 chrIX:257372-257759 1.0000 100 chrIX:299970-300513 1.0000 100 chrIX:315999-317643 1.0000 100 chrIX:323620-323809 1.0000 100 chrIX:323986-324380 1.0000 100 chrIX:325742-326185 1.0000 100 chrIX:336078-336620 1.0000 100 chrIX:370224-370630 1.0000 100 chrV:27700-29867 1.0000 100 chrV:53529-53960 1.0000 100 chrV:61103-62154 1.0000 100 chrV:67121-68874 1.0000 100 chrV:69136-69305 1.0000 100 chrV:85131-86929 1.0000 100 chrV:99898-100326 1.0000 100 chrV:117621-118318 1.0000 100 chrV:130803-131375 1.0000 100 chrV:135182-136046 1.0000 100 chrV:138447-140904 1.0000 100 chrV:176852-177424 1.0000 100 chrV:249367-249526 1.0000 100 chrV:249683-250522 1.0000 100 chrV:270396-270820 1.0000 100 chrV:288143-288739 1.0000 100 chrV:305823-306928 1.0000 100 chrV:311724-312309 1.0000 100 chrV:322130-323065 1.0000 100 chrV:354672-355454 1.0000 100 chrV:362194-362466 1.0000 100 chrV:396127-396571 1.0000 100 chrV:423048-424322 1.0000 100 chrV:430994-432021 1.0000 100 chrV:434396-434997 1.0000 100 chrV:435623-436168 1.0000 100 chrV:438496-438962 1.0000 100 chrV:441777-442668 1.0000 100 chrV:442965-443382 1.0000 100 chrV:469257-469666 1.0000 100 chrV:486941-487579 1.0000 100 chrV:492223-492554 1.0000 100 chrV:550950-551589 1.0000 100 chrVI:64153-65383 1.0000 100 chrVI:95477-95933 1.0000 100 chrVI:101123-101563 1.0000 100 chrVI:136733-137703 1.0000 100 chrVI:157897-158494 1.0000 100 chrVI:161990-162688 1.0000 100 chrVI:166780-167708 1.0000 100 chrVI:180692-181253 1.0000 100 chrVI:191101-191783 1.0000 100 chrVI:210474-211120 1.0000 100 chrVI:221743-222297 1.0000 100 chrVI:223950-224143 1.0000 100 chrVI:226440-227241 1.0000 100 chrVII:295-2316 1.0000 100 chrVII:110266-110784 1.0000 100 chrVII:115332-115719 1.0000 100 chrVII:121967-122473 1.0000 100 chrVII:148101-149490 1.0000 100 chrVII:185202-185910 1.0000 100 chrVII:205313-205764 1.0000 100 chrVII:205926-206107 1.0000 100 chrVII:254118-254725 1.0000 100 chrVII:277047-277357 1.0000 100 chrVII:277559-278603 1.0000 100 chrVII:287239-287708 1.0000 100 chrVII:310428-312513 1.0000 100 chrVII:319232-320133 1.0000 100 chrVII:328373-328959 1.0000 100 chrVII:364921-366650 1.0000 100 chrVII:371257-371474 1.0000 100 chrVII:398670-400153 1.0000 100 chrVII:401393-401611 1.0000 100 chrVII:405462-405967 1.0000 100 chrVII:412063-412603 1.0000 100 chrVII:422429-422581 1.0000 100 chrVII:422732-423360 1.0000 100 chrVII:438593-438880 1.0000 100 chrVII:440320-441104 1.0000 100 chrVII:481456-482889 1.0000 100 chrVII:531312-531811 1.0000 100 chrVII:531986-532152 1.0000 100 chrVII:533817-535187 1.0000 100 chrVII:541716-542155 1.0000 100 chrVII:544415-544900 1.0000 100 chrVII:555197-556682 1.0000 100 chrVII:561433-561656 1.0000 100 chrVII:648775-649397 1.0000 100 chrVII:661531-661947 1.0000 100 chrVII:700337-701270 1.0000 100 chrVII:706926-707181 1.0000 100 chrVII:726182-726747 1.0000 100 chrVII:730955-731431 1.0000 100 chrVII:731585-731803 1.0000 100 chrVII:736202-736551 1.0000 100 chrVII:738803-739550 1.0000 100 chrVII:771752-772167 1.0000 100 chrVII:774114-774607 1.0000 100 chrVII:779365-779905 1.0000 100 chrVII:788123-788724 1.0000 100 chrVII:794097-794553 1.0000 100 chrVII:823340-823690 1.0000 100 chrVII:828417-828984 1.0000 100 chrVII:845250-846174 1.0000 100 chrVII:857090-857854 1.0000 100 chrVII:876016-878083 1.0000 100 chrVII:878590-879301 1.0000 100 chrVII:882466-883324 1.0000 100 chrVII:914878-915181 1.0000 100 chrVII:930869-931625 1.0000 100 chrVII:1004040-1004418 1.0000 100 chrVIII:34399-35146 1.0000 100 chrVIII:35323-36171 1.0000 100 chrVIII:62460-62911 1.0000 100 chrVIII:74825-75916 1.0000 100 chrVIII:103192-105270 1.0000 100 chrVIII:115969-116421 1.0000 100 chrVIII:125904-126308 1.0000 100 chrVIII:132773-133087 1.0000 100 chrVIII:133965-135069 1.0000 100 chrVIII:145718-146460 1.0000 100 chrVIII:148980-149301 1.0000 100 chrVIII:174805-175730 1.0000 100 chrVIII:236611-236876 1.0000 100 chrVIII:237757-238134 1.0000 100 chrVIII:296777-297281 1.0000 100 chrVIII:358285-358797 1.0000 100 chrVIII:375230-376247 1.0000 100 chrVIII:381469-382489 1.0000 100 chrVIII:382686-383331 1.0000 100 chrVIII:388666-389002 1.0000 100 chrVIII:411026-411715 1.0000 100 chrVIII:466698-467300 1.0000 100 chrVIII:475508-475912 1.0000 100 chrVIII:504767-505046 1.0000 100 chrVIII:505825-506179 1.0000 100 chrVIII:554142-554723 1.0000 100 chrVIII:556611-556765 1.0000 100 chrX:59024-59381 1.0000 100 chrX:73378-75716 1.0000 100 chrX:90053-90421 1.0000 100 chrX:115793-116215 1.0000 100 chrX:120347-121911 1.0000 100 chrX:122190-122959 1.0000 100 chrX:138965-140186 1.0000 100 chrX:157484-157877 1.0000 100 chrX:196439-197439 1.0000 100 chrX:204547-205048 1.0000 100 chrX:227772-228627 1.0000 100 chrX:233693-234717 1.0000 100 chrX:354007-354503 1.0000 100 chrX:355186-355735 1.0000 100 chrX:374211-374914 1.0000 100 chrX:378188-378564 1.0000 100 chrX:390659-391340 1.0000 100 chrX:391795-392094 1.0000 100 chrX:396618-396950 1.0000 100 chrX:414757-415220 1.0000 100 chrX:415714-416236 1.0000 100 chrX:422447-423308 1.0000 100 chrX:424295-424720 1.0000 100 chrX:517655-518076 1.0000 100 chrX:523918-524359 1.0000 100 chrX:531493-532219 1.0000 100 chrX:538018-538749 1.0000 100 chrX:540862-542015 1.0000 100 chrX:542764-543269 1.0000 100 chrX:607918-608125 1.0000 100 chrX:617723-618127 1.0000 100 chrX:651205-651582 1.0000 100 chrX:651965-652811 1.0000 100 chrX:702998-703679 1.0000 100 chrX:745041-745522 1.0000 100 chrXI:46721-47028 1.0000 100 chrXI:67813-68008 1.0000 100 chrXI:74411-75003 1.0000 100 chrXI:83978-84421 1.0000 100 chrXI:107507-109060 1.0000 100 chrXI:140673-141478 1.0000 100 chrXI:158215-159837 1.0000 100 chrXI:162018-162769 1.0000 100 chrXI:202323-203287 1.0000 100 chrXI:219581-220123 1.0000 100 chrXI:244477-245490 1.0000 100 chrXI:282854-284487 1.0000 100 chrXI:302703-303209 1.0000 100 chrXI:307925-308420 1.0000 100 chrXI:313243-314040 1.0000 100 chrXI:326102-327523 1.0000 100 chrXI:379694-380567 1.0000 100 chrXI:382196-382448 1.0000 100 chrXI:431359-431651 1.0000 100 chrXI:457607-459019 1.0000 100 chrXI:490687-491199 1.0000 100 chrXI:513188-513607 1.0000 100 chrXI:517791-518068 1.0000 100 chrXI:578767-579321 1.0000 100 chrXI:617765-619370 1.0000 100 chrXI:666621-666775 1.0000 100 chrXII:11254-11496 1.0000 100 chrXII:47210-49209 1.0000 100 chrXII:65480-66068 1.0000 100 chrXII:87735-88425 1.0000 100 chrXII:92244-92731 1.0000 100 chrXII:97188-97808 1.0000 100 chrXII:167719-168234 1.0000 100 chrXII:201940-202679 1.0000 100 chrXII:214730-215064 1.0000 100 chrXII:232156-234205 1.0000 100 chrXII:241612-242008 1.0000 100 chrXII:366046-366591 1.0000 100 chrXII:369674-370206 1.0000 100 chrXII:373852-374675 1.0000 100 chrXII:424184-424444 1.0000 100 chrXII:426929-427444 1.0000 100 chrXII:448524-448851 1.0000 100 chrXII:459613-460683 1.0000 100 chrXII:498449-499771 1.0000 100 chrXII:591816-592087 1.0000 100 chrXII:592290-592968 1.0000 100 chrXII:605157-605624 1.0000 100 chrXII:628143-628635 1.0000 100 chrXII:636774-639948 1.0000 100 chrXII:656839-657209 1.0000 100 chrXII:673522-674585 1.0000 100 chrXII:713147-713529 1.0000 100 chrXII:731269-732294 1.0000 100 chrXII:734543-734927 1.0000 100 chrXII:780445-781868 1.0000 100 chrXII:783888-784506 1.0000 100 chrXII:793724-795369 1.0000 100 chrXII:795659-797381 1.0000 100 chrXII:809756-814258 1.0000 100 chrXII:818502-819140 1.0000 100 chrXII:874860-875678 1.0000 100 chrXII:897671-899020 1.0000 100 chrXII:921723-923944 1.0000 100 chrXII:932090-932490 1.0000 100 chrXII:962815-963321 1.0000 100 chrXII:975711-976184 1.0000 100 chrXII:1017759-1019545 1.0000 100 chrXII:1028200-1028561 1.0000 100 chrXII:1051925-1052213 1.0000 100 chrXIII:19013-19481 1.0000 100 chrXIII:19642-20524 1.0000 100 chrXIII:91394-92069 1.0000 100 chrXIII:131576-132120 1.0000 100 chrXIII:145543-146253 1.0000 100 chrXIII:168215-169043 1.0000 100 chrXIII:195932-196303 1.0000 100 chrXIII:225326-225714 1.0000 100 chrXIII:253380-253564 1.0000 100 chrXIII:259000-259445 1.0000 100 chrXIII:290473-291106 1.0000 100 chrXIII:296630-298815 1.0000 100 chrXIII:320984-321678 1.0000 100 chrXIII:352089-352483 1.0000 100 chrXIII:362938-363315 1.0000 100 chrXIII:372188-372656 1.0000 100 chrXIII:378804-379621 1.0000 100 chrXIII:420326-420897 1.0000 100 chrXIII:463322-464196 1.0000 100 chrXIII:480410-480821 1.0000 100 chrXIII:499021-500686 1.0000 100 chrXIII:504913-505239 1.0000 100 chrXIII:549987-553100 1.0000 100 chrXIII:572614-573298 1.0000 100 chrXIII:586379-586909 1.0000 100 chrXIII:652099-652892 1.0000 100 chrXIII:671300-674724 1.0000 100 chrXIII:732000-732522 1.0000 100 chrXIII:747758-748145 1.0000 100 chrXIII:753002-754216 1.0000 100 chrXIII:754458-755149 1.0000 100 chrXIII:768188-768440 1.0000 100 chrXIII:807983-808570 1.0000 100 chrXIII:837686-838236 1.0000 100 chrXIII:861203-861402 1.0000 100 chrXIII:887046-889059 1.0000 100 chrXIV:25204-26198 1.0000 100 chrXIV:62002-64533 1.0000 100 chrXIV:96043-96517 1.0000 100 chrXIV:102577-103253 1.0000 100 chrXIV:104614-105101 1.0000 100 chrXIV:172570-174599 1.0000 100 chrXIV:229710-230680 1.0000 100 chrXIV:241047-241250 1.0000 100 chrXIV:241416-241749 1.0000 100 chrXIV:302647-303963 1.0000 100 chrXIV:330358-331078 1.0000 100 chrXIV:374661-375097 1.0000 100 chrXIV:392333-392727 1.0000 100 chrXIV:442807-444319 1.0000 100 chrXIV:444477-444794 1.0000 100 chrXIV:495214-495627 1.0000 100 chrXIV:499221-500695 1.0000 100 chrXIV:518587-519125 1.0000 100 chrXIV:525070-525288 1.0000 100 chrXIV:546579-547354 1.0000 100 chrXIV:560289-560860 1.0000 100 chrXIV:568050-568653 1.0000 100 chrXIV:569697-570164 1.0000 100 chrXIV:575118-576086 1.0000 100 chrXIV:576675-577690 1.0000 100 chrXIV:602083-602552 1.0000 100 chrXIV:619748-620001 1.0000 100 chrXIV:631531-632136 1.0000 100 chrXIV:632422-632878 1.0000 100 chrXIV:716005-716595 1.0000 100 chrXIV:725652-726334 1.0000 100 chrXIV:783535-784324 1.0000 100 chrXV:79766-80129 1.0000 100 chrXV:92744-94784 1.0000 100 chrXV:110218-110667 1.0000 100 chrXV:110861-111206 1.0000 100 chrXV:113477-113884 1.0000 100 chrXV:114088-114463 1.0000 100 chrXV:159282-160119 1.0000 100 chrXV:161146-161718 1.0000 100 chrXV:167939-168469 1.0000 100 chrXV:216290-216701 1.0000 100 chrXV:226436-226895 1.0000 100 chrXV:228012-228562 1.0000 100 chrXV:253828-254095 1.0000 100 chrXV:274472-274959 1.0000 100 chrXV:281962-282941 1.0000 100 chrXV:288020-288396 1.0000 100 chrXV:300914-301729 1.0000 100 chrXV:340172-340700 1.0000 100 chrXV:353908-354312 1.0000 100 chrXV:380711-381040 1.0000 100 chrXV:438447-439056 1.0000 100 chrXV:444660-446193 1.0000 100 chrXV:464089-464807 1.0000 100 chrXV:465012-465485 1.0000 100 chrXV:487444-487752 1.0000 100 chrXV:504894-505484 1.0000 100 chrXV:571606-572129 1.0000 100 chrXV:594316-594639 1.0000 100 chrXV:662994-663194 1.0000 100 chrXV:663472-664254 1.0000 100 chrXV:678518-679139 1.0000 100 chrXV:710122-710595 1.0000 100 chrXV:779702-780915 1.0000 100 chrXV:853963-854841 1.0000 100 chrXV:866507-867070 1.0000 100 chrXV:877248-878034 1.0000 100 chrXV:925217-925404 1.0000 100 chrXV:968153-968597 1.0000 100 chrXV:976276-976702 1.0000 100 chrXV:978846-979113 1.0000 100 chrXV:979819-981357 1.0000 100 chrXV:1003928-1004954 1.0000 100 chrXV:1025742-1026160 1.0000 100 chrXV:1027885-1029083 1.0000 100 chrXVI:55860-56421 1.0000 100 chrXVI:75481-76771 1.0000 100 chrXVI:172891-174103 1.0000 100 chrXVI:188679-189239 1.0000 100 chrXVI:210013-210784 1.0000 100 chrXVI:282053-282964 1.0000 100 chrXVI:302675-302942 1.0000 100 chrXVI:303102-304637 1.0000 100 chrXVI:338483-339151 1.0000 100 chrXVI:378667-378986 1.0000 100 chrXVI:406216-407738 1.0000 100 chrXVI:435613-436273 1.0000 100 chrXVI:519678-520520 1.0000 100 chrXVI:559910-560290 1.0000 100 chrXVI:572015-572536 1.0000 100 chrXVI:581847-582355 1.0000 100 chrXVI:622027-622838 1.0000 100 chrXVI:640619-641539 1.0000 100 chrXVI:689340-689851 1.0000 100 chrXVI:699629-700380 1.0000 100 chrXVI:731912-732668 1.0000 100 chrXVI:744081-744588 1.0000 100 chrXVI:769019-769465 1.0000 100 chrXVI:775663-776140 1.0000 100 chrXVI:794436-794825 1.0000 100 chrXVI:810579-811718 1.0000 100 chrXVI:819314-820249 1.0000 100 chrXVI:856741-857112 1.0000 100 chrXVI:860121-860699 1.0000 100 chrXVI:879923-880729 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--HAA1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--HAA1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--HAA1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 502 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 50200 N= 502 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.304 C 0.196 G 0.196 T 0.304 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--HAA1/background): A 0.312 C 0.188 G 0.188 T 0.312 ******************************************************************************** ******************************************************************************** MOTIF MBSRGRATCGAACYSVKGACCTYMNGVTTR MEME-1 width = 30 sites = 77 llr = 1619 E-value = 1.4e-359 ******************************************************************************** -------------------------------------------------------------------------------- Motif MBSRGRATCGAACYSVKGACCTYMNGVTTR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3::3:55:::aa::13:27:11132:5115 pos.-specific C 554:::1:8:::a6532::76345433:11 probability G 2356a52::a::::44581:21:1273224 matrix T :2::::2a2::::3::3:2316523::761 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * **** * Relative 1.4 * ****** * * Entropy 1.2 * * ****** * * * (30.3 bits) 1.0 **** ******** * * * 0.7 ****** ******** ** ** * * 0.5 ****** ***************** **** 0.2 ****** *********************** 0.0 ------------------------------ Multilevel CCGGGGATCGAACCCGGGACCTTCCGATTA consensus AGCA AG T TGCT T CCATCC GG sequence T A G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSRGRATCGAACYSVKGACCTYMNGVTTR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXV:663472-664254 + 7 4.49e-13 ATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXIII:586379-586909 + 50 4.49e-13 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXIII:420326-420897 + 35 4.49e-13 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXI:307925-308420 + 30 4.49e-13 ATTGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrX:378188-378564 - 70 4.49e-13 G CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrVII:823340-823690 - 53 4.49e-13 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrVII:412063-412603 + 19 4.49e-13 CTTGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrV:438496-438962 - 57 4.49e-13 ATTGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXVI:860121-860699 - 52 5.28e-13 TCTGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrXV:226436-226895 + 4 5.28e-13 AAG CCCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrX:531493-532219 - 55 5.28e-13 ACTGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrVII:845250-846174 - 20 5.28e-13 ATTGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrVI:180692-181253 + 60 5.28e-13 ACTGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrIV:83436-83821 - 3 5.28e-13 CTTGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATGG CA chrIII:142485-142982 + 26 5.28e-13 GATGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrVIII:475508-475912 + 54 9.91e-13 AATGTTCCAA CCGAGGATCGAACTCGGGACCTTTGCCGTG TGAAGGCAAC chrIV:1075305-1075743 + 6 9.91e-13 TCCAA CCGAGGATCGAACTCGGGACCTTTGCCGTG TGAAGGCAAC chrXVI:879923-880729 + 28 2.41e-12 AATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXIV:631531-632136 + 71 2.41e-12 TGGGGGCGAG CCGGGACTCGAACCCGGGACCTCCCGCACC chrXII:1051925-1052213 + 60 2.41e-12 AATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrVII:738803-739550 - 32 2.41e-12 AATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrIX:183289-183700 + 4 2.41e-12 TCT AGCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrIV:488474-489105 + 66 2.41e-12 TCTGATCCAA CCGAGGTTCGAACTCGGGATCTTCGCCGTG TAAAG chrIII:123353-123802 + 58 2.41e-12 GTGGGGCGAG CCGGGACTCGAACCCGGGACCTCCCGCACC CTAAGCGAGA chrII:326545-327133 + 11 2.41e-12 TTTGATCCAA CCGAGGTTCGAACTCGGGATCTTCGCCGTG TAAAGGCGAC chrXI:140673-141478 + 1 4.23e-12 . CGGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrVII:328373-328959 - 1 4.23e-12 AACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTGA chrV:176852-177424 - 45 4.23e-12 TACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrIX:197256-198010 - 43 4.23e-12 AACTCCGAAG CGGGGAGTCGAACCCCGGTCTCCACGGTGA GAACGTGATG chrIV:1016962-1017489 + 40 4.23e-12 AACTCCGAAG CGGGGAGTCGAACCCCGGTCTCCACGGTGA GAACGTGATG chrII:644963-645418 - 61 4.23e-12 AACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrXII:214730-215064 + 44 5.56e-12 AATGGACGCA ACCGGAATCGAACCGATGACCTCTTCCTTG CAAGGGAAGC chrV:311724-312309 + 65 5.56e-12 ATTGGACGCA ACCGGAATCGAACCGATGACCTCTTCCTTG CAAGGG chrXVI:581847-582355 - 46 7.25e-12 AAAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrXIII:480410-480821 + 64 7.25e-12 GAAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCA chrX:414757-415220 - 63 7.25e-12 AGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrIX:299970-300513 + 45 7.25e-12 ATAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrXII:448524-448851 + 21 9.41e-12 GAAGGTCCTA CCCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrIV:645011-645376 + 18 9.41e-12 AAAGGTCCTA CCCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrV:130803-131375 + 51 1.22e-11 ATAGGTCTTA CCCGGATTCGAACCGGGGTTGTTCGGATCA AAACCGAAAG chrXIII:131576-132120 + 35 3.21e-11 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrX:374211-374914 + 2 3.21e-11 G ATGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrVII:736202-736551 - 48 3.21e-11 AACACTCACG ATGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrII:405659-406229 - 18 3.21e-11 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrXIII:807983-808570 + 28 4.54e-11 GAAGGTCCCA CCCGGATTCGAACTGGGGTTGTTCGGATCA GAACCGAAAG chrXIII:195932-196303 + 9 1.09e-10 GGGGCGAG CTGGGAATTGAACCCAGGGCCTCTCGCATG CTTTGTCTTC chrXV:976276-976702 - 17 1.65e-10 ATTGCTCCAG GGGAGGTTCGAACTCTCGACCTTCAGATTA TGAGACTGAC chrIV:1175595-1176093 - 70 1.65e-10 G GGGAGGTTCGAACTCTCGACCTTCAGATTA TGAGACTGAC chrXIV:96043-96517 + 19 2.02e-10 TTTGAGCGGT ACGAGAATCGAACCCGTGTCCCCACCTTGG AAGGGTGGGA chrVII:779365-779905 - 65 2.02e-10 AGCGGT ACGAGAATCGAACCCGTGTCCCCACCTTGG AAGGGTGGGA chrXIV:104614-105101 - 33 4.80e-10 TATGCTTCCA ATCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrII:266185-266715 - 13 4.80e-10 AATGCTTCCA ATCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrIV:884259-884623 - 65 5.26e-10 CTCGAG GTGGGGTTTGAACCCACGACGGTCGCGTTG CTTTTAAAGG chrXIV:632422-632878 - 35 9.83e-10 AACGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXI:74411-75003 - 3 9.83e-10 AGCGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATTA AC chrVII:730955-731431 - 30 9.83e-10 AACGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrIII:127584-127884 - 68 9.83e-10 CCA GTGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXVI:769019-769465 + 23 1.27e-09 AACTCCTCAT AGGGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrXI:578767-579321 - 29 1.27e-09 AACTCCTCAT AGGGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrVII:115332-115719 - 71 1.27e-09 . AGGGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrXVI:435613-436273 + 8 3.88e-09 GCTCGCA CTCAGGATCGAACTAAGGACCAACAGATTT GCAATCTGCT chrII:642862-643246 + 11 3.88e-09 GAAGCTCGCA CTCAGGATCGAACTAAGGACCAACAGATTT GCAATCTGCT chrXVI:856741-857112 - 61 4.51e-09 AATGGACGAG TCCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrVII:440320-441104 + 62 4.86e-09 TATGCGAATT CTGTGGATCGAACACAGGACCTCCAGATAA CTTGACCGA chrX:415714-416236 + 14 5.62e-09 ATTGAAACGG ACAGGAATTGAACCTGCAACCCTTCGATTG CAATCTTATT chrV:492223-492554 + 22 5.62e-09 TCCTTCCCCG CCAGGACTTGAACCTGGAATCTTCTGGTTC GTAGCCAGAC chrIV:619713-620218 + 62 5.62e-09 ATCTTCCCCG CCAGGACTTGAACCTGGAATCTTCTGGTTC GTAGCCAGA chrXIII:837686-838236 - 68 7.48e-09 CGG GGGCGAGTCGAACGCCCGATCTCAAGATTT CGTAGTGGTA chrIV:946152-946590 - 42 7.48e-09 AATCTCCCGG GGGCGAGTCGAACGCCCGATCTCAAGATTT CGTAGTGATA chrXVI:744081-744588 - 34 8.02e-09 TTTGCCACCT GTCAGAATTGAACTAACGACCTTTGCATTA CAAGTGCAAC chrVII:1004040-1004418 - 71 8.02e-09 . GTCAGAATTGAACTAACGACCTTTGCATTA CAAGTGCAAC chrX:517655-518076 + 6 1.90e-08 CGCCG CTCGGTTTCGATCCGAGGACATCAGGGTTA TGAGCCCTGC chrXII:426929-427444 - 30 4.16e-08 TTCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrX:204547-205048 - 22 4.16e-08 ATCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrIX:336078-336620 + 58 4.16e-08 ATCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrII:347402-347930 - 33 1.21e-07 ACTGAAGGAT GCGAGGTTCGAACTCGCGCGGACAACCGTC CAACAGATCT chrII:9355-9988 - 8 1.21e-07 ACTGAAGGAT GCGAGGTTCGAACTCGCGCGGACAACCGTC CAACAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSRGRATCGAACYSVKGACCTYMNGVTTR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:663472-664254 4.5e-13 6_[+1]_64 chrXIII:586379-586909 4.5e-13 49_[+1]_21 chrXIII:420326-420897 4.5e-13 34_[+1]_36 chrXI:307925-308420 4.5e-13 29_[+1]_41 chrX:378188-378564 4.5e-13 69_[-1]_1 chrVII:823340-823690 4.5e-13 52_[-1]_18 chrVII:412063-412603 4.5e-13 18_[+1]_52 chrV:438496-438962 4.5e-13 56_[-1]_14 chrXVI:860121-860699 5.3e-13 51_[-1]_19 chrXV:226436-226895 5.3e-13 3_[+1]_67 chrX:531493-532219 5.3e-13 54_[-1]_16 chrVII:845250-846174 5.3e-13 19_[-1]_51 chrVI:180692-181253 5.3e-13 59_[+1]_11 chrIV:83436-83821 5.3e-13 2_[-1]_68 chrIII:142485-142982 5.3e-13 25_[+1]_45 chrVIII:475508-475912 9.9e-13 53_[+1]_17 chrIV:1075305-1075743 9.9e-13 5_[+1]_65 chrXVI:879923-880729 2.4e-12 27_[+1]_43 chrXIV:631531-632136 2.4e-12 70_[+1] chrXII:1051925-1052213 2.4e-12 59_[+1]_11 chrVII:738803-739550 2.4e-12 31_[-1]_39 chrIX:183289-183700 2.4e-12 3_[+1]_67 chrIV:488474-489105 2.4e-12 65_[+1]_5 chrIII:123353-123802 2.4e-12 57_[+1]_13 chrII:326545-327133 2.4e-12 10_[+1]_60 chrXI:140673-141478 4.2e-12 [+1]_70 chrVII:328373-328959 4.2e-12 [-1]_70 chrV:176852-177424 4.2e-12 44_[-1]_26 chrIX:197256-198010 4.2e-12 42_[-1]_28 chrIV:1016962-1017489 4.2e-12 39_[+1]_31 chrII:644963-645418 4.2e-12 60_[-1]_10 chrXII:214730-215064 5.6e-12 43_[+1]_27 chrV:311724-312309 5.6e-12 64_[+1]_6 chrXVI:581847-582355 7.3e-12 45_[-1]_25 chrXIII:480410-480821 7.3e-12 63_[+1]_7 chrX:414757-415220 7.3e-12 62_[-1]_8 chrIX:299970-300513 7.3e-12 44_[+1]_26 chrXII:448524-448851 9.4e-12 20_[+1]_50 chrIV:645011-645376 9.4e-12 17_[+1]_53 chrV:130803-131375 1.2e-11 50_[+1]_20 chrXIII:131576-132120 3.2e-11 34_[+1]_36 chrX:374211-374914 3.2e-11 1_[+1]_69 chrVII:736202-736551 3.2e-11 47_[-1]_23 chrII:405659-406229 3.2e-11 17_[-1]_53 chrXIII:807983-808570 4.5e-11 27_[+1]_43 chrXIII:195932-196303 1.1e-10 8_[+1]_62 chrXV:976276-976702 1.7e-10 16_[-1]_54 chrIV:1175595-1176093 1.7e-10 69_[-1]_1 chrXIV:96043-96517 2e-10 18_[+1]_52 chrVII:779365-779905 2e-10 64_[-1]_6 chrXIV:104614-105101 4.8e-10 32_[-1]_38 chrII:266185-266715 4.8e-10 12_[-1]_58 chrIV:884259-884623 5.3e-10 64_[-1]_6 chrXIV:632422-632878 9.8e-10 34_[-1]_36 chrXI:74411-75003 9.8e-10 2_[-1]_68 chrVII:730955-731431 9.8e-10 29_[-1]_41 chrIII:127584-127884 9.8e-10 67_[-1]_3 chrXVI:769019-769465 1.3e-09 22_[+1]_48 chrXI:578767-579321 1.3e-09 28_[-1]_42 chrVII:115332-115719 1.3e-09 70_[-1] chrXVI:435613-436273 3.9e-09 7_[+1]_63 chrII:642862-643246 3.9e-09 10_[+1]_60 chrXVI:856741-857112 4.5e-09 60_[-1]_10 chrVII:440320-441104 4.9e-09 61_[+1]_9 chrX:415714-416236 5.6e-09 13_[+1]_57 chrV:492223-492554 5.6e-09 21_[+1]_49 chrIV:619713-620218 5.6e-09 61_[+1]_9 chrXIII:837686-838236 7.5e-09 67_[-1]_3 chrIV:946152-946590 7.5e-09 41_[-1]_29 chrXVI:744081-744588 8e-09 33_[-1]_37 chrVII:1004040-1004418 8e-09 70_[-1] chrX:517655-518076 1.9e-08 5_[+1]_65 chrXII:426929-427444 4.2e-08 29_[-1]_41 chrX:204547-205048 4.2e-08 21_[-1]_49 chrIX:336078-336620 4.2e-08 57_[+1]_13 chrII:347402-347930 1.2e-07 32_[-1]_38 chrII:9355-9988 1.2e-07 7_[-1]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSRGRATCGAACYSVKGACCTYMNGVTTR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MBSRGRATCGAACYSVKGACCTYMNGVTTR width=30 seqs=77 chrXV:663472-664254 ( 7) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXIII:586379-586909 ( 50) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXIII:420326-420897 ( 35) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXI:307925-308420 ( 30) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrX:378188-378564 ( 70) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrVII:823340-823690 ( 53) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrVII:412063-412603 ( 19) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrV:438496-438962 ( 57) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXVI:860121-860699 ( 52) CCCGGAATCGAACCGGGGGCCCAACGATGG 1 chrXV:226436-226895 ( 4) CCCGGAATCGAACCGGGGGCCCAACGATGG 1 chrX:531493-532219 ( 55) CCCGGAATCGAACCGGGGGCCCAACGATGG 1 chrVII:845250-846174 ( 20) CCCGGAATCGAACCGGGGGCCCAACGATGG 1 chrVI:180692-181253 ( 60) CCCGGAATCGAACCGGGGGCCCAACGATGG 1 chrIV:83436-83821 ( 3) CCCGGAATCGAACCGGGGGCCCAACGATGG 1 chrIII:142485-142982 ( 26) CCCGGAATCGAACCGGGGGCCCAACGATGG 1 chrVIII:475508-475912 ( 54) CCGAGGATCGAACTCGGGACCTTTGCCGTG 1 chrIV:1075305-1075743 ( 6) CCGAGGATCGAACTCGGGACCTTTGCCGTG 1 chrXVI:879923-880729 ( 28) AGCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrXIV:631531-632136 ( 71) CCGGGACTCGAACCCGGGACCTCCCGCACC 1 chrXII:1051925-1052213 ( 60) AGCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrVII:738803-739550 ( 32) AGCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrIX:183289-183700 ( 4) AGCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrIV:488474-489105 ( 66) CCGAGGTTCGAACTCGGGATCTTCGCCGTG 1 chrIII:123353-123802 ( 58) CCGGGACTCGAACCCGGGACCTCCCGCACC 1 chrII:326545-327133 ( 11) CCGAGGTTCGAACTCGGGATCTTCGCCGTG 1 chrXI:140673-141478 ( 1) CGGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrVII:328373-328959 ( 1) CGGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrV:176852-177424 ( 45) CGGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrIX:197256-198010 ( 43) CGGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrIV:1016962-1017489 ( 40) CGGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrII:644963-645418 ( 61) CGGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrXII:214730-215064 ( 44) ACCGGAATCGAACCGATGACCTCTTCCTTG 1 chrV:311724-312309 ( 65) ACCGGAATCGAACCGATGACCTCTTCCTTG 1 chrXVI:581847-582355 ( 46) AGGGGGCTCGAACCCCTAACCTTATGATTA 1 chrXIII:480410-480821 ( 64) AGGGGGCTCGAACCCCTAACCTTATGATTA 1 chrX:414757-415220 ( 63) AGGGGGCTCGAACCCCTAACCTTATGATTA 1 chrIX:299970-300513 ( 45) AGGGGGCTCGAACCCCTAACCTTATGATTA 1 chrXII:448524-448851 ( 21) CCCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrIV:645011-645376 ( 18) CCCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrV:130803-131375 ( 51) CCCGGATTCGAACCGGGGTTGTTCGGATCA 1 chrXIII:131576-132120 ( 35) ATGGGGGTCGAACCCATAATCTTCTGATTA 1 chrX:374211-374914 ( 2) ATGGGGGTCGAACCCATAATCTTCTGATTA 1 chrVII:736202-736551 ( 48) ATGGGGGTCGAACCCATAATCTTCTGATTA 1 chrII:405659-406229 ( 18) ATGGGGGTCGAACCCATAATCTTCTGATTA 1 chrXIII:807983-808570 ( 28) CCCGGATTCGAACTGGGGTTGTTCGGATCA 1 chrXIII:195932-196303 ( 9) CTGGGAATTGAACCCAGGGCCTCTCGCATG 1 chrXV:976276-976702 ( 17) GGGAGGTTCGAACTCTCGACCTTCAGATTA 1 chrIV:1175595-1176093 ( 70) GGGAGGTTCGAACTCTCGACCTTCAGATTA 1 chrXIV:96043-96517 ( 19) ACGAGAATCGAACCCGTGTCCCCACCTTGG 1 chrVII:779365-779905 ( 65) ACGAGAATCGAACCCGTGTCCCCACCTTGG 1 chrXIV:104614-105101 ( 33) ATCGGATTTGAACCGATGATCTCCACATTA 1 chrII:266185-266715 ( 13) ATCGGATTTGAACCGATGATCTCCACATTA 1 chrIV:884259-884623 ( 65) GTGGGGTTTGAACCCACGACGGTCGCGTTG 1 chrXIV:632422-632878 ( 35) GTGAGGGTTGAACTCACGATCTTGCGATTA 1 chrXI:74411-75003 ( 3) GTGAGGGTTGAACTCACGATCTTGCGATTA 1 chrVII:730955-731431 ( 30) GTGAGGGTTGAACTCACGATCTTGCGATTA 1 chrIII:127584-127884 ( 68) GTGAGGGTTGAACTCACGATCTTGCGATTA 1 chrXVI:769019-769465 ( 23) AGGGGGCTCGAACCCCTGACATTTCGGTAT 1 chrXI:578767-579321 ( 29) AGGGGGCTCGAACCCCTGACATTTCGGTAT 1 chrVII:115332-115719 ( 71) AGGGGGCTCGAACCCCTGACATTTCGGTAT 1 chrXVI:435613-436273 ( 8) CTCAGGATCGAACTAAGGACCAACAGATTT 1 chrII:642862-643246 ( 11) CTCAGGATCGAACTAAGGACCAACAGATTT 1 chrXVI:856741-857112 ( 61) TCCGGAATCGAACCGGAGACCTCTCCCATG 1 chrVII:440320-441104 ( 62) CTGTGGATCGAACACAGGACCTCCAGATAA 1 chrX:415714-416236 ( 14) ACAGGAATTGAACCTGCAACCCTTCGATTG 1 chrV:492223-492554 ( 22) CCAGGACTTGAACCTGGAATCTTCTGGTTC 1 chrIV:619713-620218 ( 62) CCAGGACTTGAACCTGGAATCTTCTGGTTC 1 chrXIII:837686-838236 ( 68) GGGCGAGTCGAACGCCCGATCTCAAGATTT 1 chrIV:946152-946590 ( 42) GGGCGAGTCGAACGCCCGATCTCAAGATTT 1 chrXVI:744081-744588 ( 34) GTCAGAATTGAACTAACGACCTTTGCATTA 1 chrVII:1004040-1004418 ( 71) GTCAGAATTGAACTAACGACCTTTGCATTA 1 chrX:517655-518076 ( 6) CTCGGTTTCGATCCGAGGACATCAGGGTTA 1 chrXII:426929-427444 ( 30) CGGGGAATTGAACCCCGATCTGGCACGCGA 1 chrX:204547-205048 ( 22) CGGGGAATTGAACCCCGATCTGGCACGCGA 1 chrIX:336078-336620 ( 58) CGGGGAATTGAACCCCGATCTGGCACGCGA 1 chrII:347402-347930 ( 33) GCGAGGTTCGAACTCGCGCGGACAACCGTC 1 chrII:9355-9988 ( 8) GCGAGGTTCGAACTCGCGCGGACAACCGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSRGRATCGAACYSVKGACCTYMNGVTTR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 35642 bayes= 7.32968 E= 1.4e-359 -13 150 -16 -458 -1291 127 73 -41 -300 119 150 -1291 12 -286 173 -458 -1291 -1291 241 -1291 62 -1291 143 -458 59 -40 14 -78 -1291 -1291 -1291 168 -1291 207 -1291 -58 -1291 -1291 241 -1291 168 -1291 -1291 -1291 166 -1291 -1291 -458 -1291 241 -1291 -1291 -458 176 -286 6 -258 150 100 -300 -26 60 119 -358 -458 -5 150 -19 -78 -1291 212 -1291 112 -286 -86 -68 -1291 181 -286 0 -258 176 5 -141 -258 46 -186 103 -141 95 -227 62 0 135 -186 -100 -78 90 14 -26 -1291 66 190 -1291 54 46 46 -358 -258 -227 -5 122 -258 -127 31 103 62 -127 90 -178 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSRGRATCGAACYSVKGACCTYMNGVTTR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 77 E= 1.4e-359 0.285714 0.532468 0.168831 0.012987 0.000000 0.454545 0.311688 0.233766 0.038961 0.428571 0.532468 0.000000 0.337662 0.025974 0.623377 0.012987 0.000000 0.000000 1.000000 0.000000 0.480519 0.000000 0.506494 0.012987 0.467532 0.142857 0.207792 0.181818 0.000000 0.000000 0.000000 1.000000 0.000000 0.792208 0.000000 0.207792 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.987013 0.000000 0.000000 0.012987 0.000000 1.000000 0.000000 0.000000 0.012987 0.636364 0.025974 0.324675 0.051948 0.532468 0.376623 0.038961 0.259740 0.285714 0.428571 0.025974 0.012987 0.181818 0.532468 0.272727 0.181818 0.000000 0.818182 0.000000 0.675325 0.025974 0.103896 0.194805 0.000000 0.662338 0.025974 0.311688 0.051948 0.636364 0.194805 0.116883 0.051948 0.259740 0.051948 0.636364 0.116883 0.363636 0.038961 0.480519 0.311688 0.480519 0.051948 0.155844 0.181818 0.350649 0.207792 0.259740 0.000000 0.298701 0.701299 0.000000 0.454545 0.259740 0.259740 0.025974 0.051948 0.038961 0.181818 0.727273 0.051948 0.077922 0.233766 0.636364 0.480519 0.077922 0.350649 0.090909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSRGRATCGAACYSVKGACCTYMNGVTTR MEME-1 regular expression -------------------------------------------------------------------------------- [CA][CGT][GC][GA]G[GA][AG]T[CT]GAAC[CT][CG][GCA][GT]GA[CT]C[TC][TC][CA][CTG][GC][ACG]T[TG][AG] -------------------------------------------------------------------------------- Time 235.76 secs. ******************************************************************************** ******************************************************************************** MOTIF SSCYYWWMCCACTRVRCYAMV MEME-2 width = 21 sites = 96 llr = 1306 E-value = 1.9e-189 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCYYWWMCCACTRVRCYAMV MEME-2 Description -------------------------------------------------------------------------------- Simplified A 21111355:2a::434::a33 pos.-specific C 44633114a6:8:23:a7:43 probability G 44221:1::2:::346::::3 matrix T ::25553::::2a1:::3:21 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * ** * * Relative 1.4 * *** * * Entropy 1.2 * *** **** (19.6 bits) 1.0 * *** **** 0.7 ** ****** ***** 0.5 *** ****** ****** 0.2 ********************* 0.0 --------------------- Multilevel GCCTTTAACCACTAGGCCACG consensus CG CCATC A GAA T AA sequence C TC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWWMCCACTRVRCYAMV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIII:259000-259445 + 42 1.20e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCATACT chrXII:167719-168234 + 74 1.20e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCA chrXV:274472-274959 - 13 5.17e-10 AGCAGGGCAT CGCCTTAACCACTCGGCCACT GGGACACGAT chrIV:1150725-1151173 + 17 5.17e-10 TAGCAGGCAT CGCCTTAACCACTCGGCCACT GGGACTGAAA chrXVI:879923-880729 + 68 8.00e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCATTAT chrXIV:602083-602552 - 50 8.00e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCATTGT chrXIV:569697-570164 + 35 8.00e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCACTGT chrVII:738803-739550 - 1 8.00e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAAG chrIX:183289-183700 + 44 8.00e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCAGGAA chrII:197191-197820 - 44 8.00e-10 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCTTGAT chrXVI:689340-689851 - 25 1.22e-09 TCAAGTCTGT CGCCTTAACCACTCGGCCATA GTGCCCAAAA chrXII:592290-592968 + 15 1.22e-09 TAAATCTGAC GCCTTAAACCACTCGGCCAAA CTCCCATTGT chrX:617723-618127 - 49 1.22e-09 TAAATCTGAC GCCTTAAACCACTCGGCCAAA CTCCCATTGT chrIII:227775-228212 - 4 1.22e-09 TCGAGTCTCT CGCCTTAACCACTCGGCCATA GTG chrXVI:856741-857112 - 31 2.69e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCGAATC chrXII:962815-963321 + 12 2.69e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCGTCGA chrXII:656839-657209 + 7 2.69e-09 AGGGAG CGCGCTACCGACTACGCCACA CGCCCAATTT chrX:424295-424720 + 33 2.69e-09 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCATCTT chrVII:774114-774607 - 44 2.69e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCAATTA chrXI:490687-491199 - 80 9.34e-09 . CGCCGTGACCATTGGGCCACG AGGAACAAGA chrV:492223-492554 + 61 9.34e-09 CGTAGCCAGA CGCCGTGACCATTGGGCCACG AGGAATAGGA chrXV:663472-664254 + 47 1.77e-08 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCACTAT chrXIII:420326-420897 + 75 1.77e-08 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACC chrXI:307925-308420 + 70 1.77e-08 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCACTTA chrX:378188-378564 - 39 1.77e-08 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCTATTA chrVII:823340-823690 - 22 1.77e-08 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCACTCT chrVII:412063-412603 + 59 1.77e-08 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCAGTTT chrV:469257-469666 - 51 1.77e-08 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCAATTA chrV:438496-438962 - 26 1.77e-08 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCTAATT chrXII:605157-605624 + 67 2.07e-08 ATAAGCACGA AGCTCTAACCACTGAGCTACA CGAGCATTTT chrXIV:632422-632878 - 4 2.40e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAG chrIII:127584-127884 - 37 2.40e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCATTTT chrVII:115332-115719 - 18 2.79e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrXV:353908-354312 + 28 3.22e-08 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCAGTAA chrXIV:104614-105101 - 3 3.22e-08 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GA chrVIII:115969-116421 + 9 3.22e-08 TAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCTCTAA chrXI:83978-84421 - 64 7.34e-08 TAAGTCTGCC GCATTAGACCACTCGGCCAAC CCTCCATACA chrXVI:581847-582355 - 16 8.35e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTCTTT chrX:414757-415220 - 33 8.35e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTAATT chrIV:1201514-1202002 - 47 8.35e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTATTT chrIII:151130-151577 + 28 8.35e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTCTTT chrXIV:374661-375097 - 45 1.55e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAG TCCGCTTATT chrXII:628143-628635 - 49 2.18e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrVII:857090-857854 + 44 2.18e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrVII:205313-205764 - 38 2.18e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrIII:74-1023 + 49 2.44e-07 CCTCCAATTA CCCGTATCCAACTCCACTACC GCTTACCCTA chrXVI:860121-860699 - 24 3.04e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTTGTT chrXVI:572015-572536 - 49 3.04e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCGAAGT chrXV:226436-226895 + 41 3.04e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTGAAT chrXIII:352089-352483 - 49 3.04e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTATA chrX:531493-532219 - 27 3.04e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTCACT chrX:396618-396950 + 37 3.04e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTTACT chrVIII:358285-358797 + 53 3.04e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTACT chrVIII:237757-238134 + 19 3.04e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTACT chrIII:142485-142982 + 63 3.04e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTAGTA chrII:36243-36593 - 35 3.04e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTACA chrXV:464089-464807 - 57 3.75e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCTTGTT chrXIII:195932-196303 + 78 3.75e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CG chrI:138977-139360 - 39 3.75e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCGTACT chrX:517655-518076 + 44 5.08e-07 TATGAGCCCT GCGCGCTTCCACTGCGCCACG GCGCTTAACT chrV:99898-100326 - 76 5.08e-07 CCCT GCGCGCTTCCACTGCGCCACG GCGCTTAGCC chrIII:149573-150232 - 73 5.08e-07 GAGCCCT GCGCGCTTCCACTGCGCCACG GCGCTCAACA chrVIII:556611-556765 - 21 6.17e-07 CCTCCAATTA CCCATATCCAACTCCACTACC ATTACCCTGC chrXVI:744081-744588 - 5 6.79e-07 TACAAGTGCA ACGCTCTACCACTAAGCTAAG GAGG chrVIII:466698-467300 - 46 6.79e-07 TACAAGTGCA ACGCTCTACCACTAAGCTAAG GAGGCTAAAA chrVII:1004040-1004418 - 42 6.79e-07 TACAAGTGCA ACGCTCTACCACTAAGCTAAG GAGGCAAACC chrVII:661531-661947 - 65 6.79e-07 TACAAGTGCA ACGCTCTACCACTAAGCTAAG GAGGCAAATT chrXV:288020-288396 - 39 8.17e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGAAGCT chrXIII:837686-838236 - 22 8.17e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTCAAT chrX:542764-543269 + 53 8.17e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTATTT chrX:354007-354503 - 44 8.17e-07 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTGATA chrXIII:572614-573298 + 24 8.95e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTACT GAAGCTATCT chrIV:1175595-1176093 - 40 8.95e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTACT GAAGCTTTGT chrIV:1256885-1257282 + 21 1.16e-06 GGGAAGCATG AATTCTAACCACTGAACCACT TTCGCTAAGA chrXIII:747758-748145 + 37 2.05e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGAGCTAGTC chrXIII:131576-132120 + 73 2.05e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGAGCTA chrX:374211-374914 + 40 2.05e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGAGCTACTA chrVII:736202-736551 - 19 2.05e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGAGCTATTG chrXI:302703-303209 - 17 2.39e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCACC GCTTCATCTT chrVII:287239-287708 + 7 2.39e-06 AGTCGA AAGCTCTACCATTGAGCCACC GCTTCATCTT chrXV:110861-111206 + 25 2.57e-06 GGAAGGGTGG GATGATAACCACTACACTAAC CGCCCGGGTT chrXIV:96043-96517 + 57 2.57e-06 GGAAGGGTGG GATGATAACCACTACACTAAC CGCCCATGTG chrVII:779365-779905 - 36 2.57e-06 GGAAGGGTGG GATGATAACCACTACACTAAC CGCCCGGGGT chrXVI:435613-436273 + 46 2.97e-06 TTGCAATCTG CTGCGCTACCACTGCGCCATA CGAGCTTTTG chrII:642862-643246 + 49 2.97e-06 TTGCAATCTG CTGCGCTACCACTGCGCCATA CGAGCTTTCT chrXIII:807983-808570 + 66 4.17e-06 CAGAACCGAA AGTGATAACCACTACACTATA GGACCTTTTT chrXII:448524-448851 + 59 4.17e-06 CAAAACCGAA AGTGATAACCACTACACTATA GGACCGGAAC chrIV:802571-803012 + 36 4.17e-06 CAAAACCGAA AGTGATAACCACTACACTATA GGACCGACAA chrIV:645011-645376 + 56 4.17e-06 CAAAACCGAA AGTGATAACCACTACACTATA GGACCGTAAC chrII:350607-351041 - 58 4.17e-06 CAAAACCGAA AGTGATAACCACTACACTATA AAACCCTTTT chrII:326545-327133 + 51 5.37e-06 TAAAGGCGAC GTCTTGAACCACTGGACCATT GGACCCGGAA chrXII:426929-427444 - 1 7.61e-06 GACAAGCGCC CATTCTGACCATTAAACTATC chrXI:513188-513607 + 31 7.61e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGAACGTT chrX:355186-355735 - 51 7.61e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGAAGAAA chrVII:544415-544900 + 16 7.61e-06 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGAAGAAA chrII:405659-406229 - 71 7.61e-06 ACAAGCGCC CATTCTGACCATTAAACTATC ACGGAAGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWWMCCACTRVRCYAMV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:259000-259445 1.2e-10 41_[+2]_38 chrXII:167719-168234 1.2e-10 73_[+2]_6 chrXV:274472-274959 5.2e-10 12_[-2]_67 chrIV:1150725-1151173 5.2e-10 16_[+2]_63 chrXVI:879923-880729 8e-10 67_[+2]_12 chrXIV:602083-602552 8e-10 49_[-2]_30 chrXIV:569697-570164 8e-10 34_[+2]_45 chrVII:738803-739550 8e-10 [-2]_79 chrIX:183289-183700 8e-10 43_[+2]_36 chrII:197191-197820 8e-10 43_[-2]_36 chrXVI:689340-689851 1.2e-09 24_[-2]_55 chrXII:592290-592968 1.2e-09 14_[+2]_65 chrX:617723-618127 1.2e-09 48_[-2]_31 chrIII:227775-228212 1.2e-09 3_[-2]_76 chrXVI:856741-857112 2.7e-09 30_[-2]_49 chrXII:962815-963321 2.7e-09 11_[+2]_68 chrXII:656839-657209 2.7e-09 6_[+2]_73 chrX:424295-424720 2.7e-09 32_[+2]_47 chrVII:774114-774607 2.7e-09 43_[-2]_36 chrXI:490687-491199 9.3e-09 79_[-2] chrV:492223-492554 9.3e-09 60_[+2]_19 chrXV:663472-664254 1.8e-08 46_[+2]_33 chrXIII:420326-420897 1.8e-08 74_[+2]_5 chrXI:307925-308420 1.8e-08 69_[+2]_10 chrX:378188-378564 1.8e-08 38_[-2]_41 chrVII:823340-823690 1.8e-08 21_[-2]_58 chrVII:412063-412603 1.8e-08 58_[+2]_21 chrV:469257-469666 1.8e-08 50_[-2]_29 chrV:438496-438962 1.8e-08 25_[-2]_54 chrXII:605157-605624 2.1e-08 66_[+2]_13 chrXIV:632422-632878 2.4e-08 3_[-2]_76 chrIII:127584-127884 2.4e-08 36_[-2]_43 chrVII:115332-115719 2.8e-08 17_[-2]_62 chrXV:353908-354312 3.2e-08 27_[+2]_52 chrXIV:104614-105101 3.2e-08 2_[-2]_77 chrVIII:115969-116421 3.2e-08 8_[+2]_71 chrXI:83978-84421 7.3e-08 63_[-2]_16 chrXVI:581847-582355 8.4e-08 15_[-2]_64 chrX:414757-415220 8.4e-08 32_[-2]_47 chrIV:1201514-1202002 8.4e-08 46_[-2]_33 chrIII:151130-151577 8.4e-08 27_[+2]_52 chrXIV:374661-375097 1.5e-07 44_[-2]_35 chrXII:628143-628635 2.2e-07 48_[-2]_31 chrVII:857090-857854 2.2e-07 43_[+2]_36 chrVII:205313-205764 2.2e-07 37_[-2]_42 chrIII:74-1023 2.4e-07 48_[+2]_31 chrXVI:860121-860699 3e-07 23_[-2]_56 chrXVI:572015-572536 3e-07 48_[-2]_31 chrXV:226436-226895 3e-07 40_[+2]_39 chrXIII:352089-352483 3e-07 48_[-2]_31 chrX:531493-532219 3e-07 26_[-2]_53 chrX:396618-396950 3e-07 36_[+2]_43 chrVIII:358285-358797 3e-07 52_[+2]_27 chrVIII:237757-238134 3e-07 18_[+2]_61 chrIII:142485-142982 3e-07 62_[+2]_17 chrII:36243-36593 3e-07 34_[-2]_45 chrXV:464089-464807 3.7e-07 56_[-2]_23 chrXIII:195932-196303 3.7e-07 77_[+2]_2 chrI:138977-139360 3.7e-07 38_[-2]_41 chrX:517655-518076 5.1e-07 43_[+2]_36 chrV:99898-100326 5.1e-07 75_[-2]_4 chrIII:149573-150232 5.1e-07 72_[-2]_7 chrVIII:556611-556765 6.2e-07 20_[-2]_59 chrXVI:744081-744588 6.8e-07 4_[-2]_75 chrVIII:466698-467300 6.8e-07 45_[-2]_34 chrVII:1004040-1004418 6.8e-07 41_[-2]_38 chrVII:661531-661947 6.8e-07 64_[-2]_15 chrXV:288020-288396 8.2e-07 38_[-2]_41 chrXIII:837686-838236 8.2e-07 21_[-2]_58 chrX:542764-543269 8.2e-07 52_[+2]_27 chrX:354007-354503 8.2e-07 43_[-2]_36 chrXIII:572614-573298 8.9e-07 23_[+2]_56 chrIV:1175595-1176093 8.9e-07 39_[-2]_40 chrIV:1256885-1257282 1.2e-06 20_[+2]_59 chrXIII:747758-748145 2.1e-06 36_[+2]_43 chrXIII:131576-132120 2.1e-06 72_[+2]_7 chrX:374211-374914 2.1e-06 39_[+2]_40 chrVII:736202-736551 2.1e-06 18_[-2]_61 chrXI:302703-303209 2.4e-06 16_[-2]_63 chrVII:287239-287708 2.4e-06 6_[+2]_73 chrXV:110861-111206 2.6e-06 24_[+2]_55 chrXIV:96043-96517 2.6e-06 56_[+2]_23 chrVII:779365-779905 2.6e-06 35_[-2]_44 chrXVI:435613-436273 3e-06 45_[+2]_34 chrII:642862-643246 3e-06 48_[+2]_31 chrXIII:807983-808570 4.2e-06 65_[+2]_14 chrXII:448524-448851 4.2e-06 58_[+2]_21 chrIV:802571-803012 4.2e-06 35_[+2]_44 chrIV:645011-645376 4.2e-06 55_[+2]_24 chrII:350607-351041 4.2e-06 57_[-2]_22 chrII:326545-327133 5.4e-06 50_[+2]_29 chrXII:426929-427444 7.6e-06 [-2]_79 chrXI:513188-513607 7.6e-06 30_[+2]_49 chrX:355186-355735 7.6e-06 50_[-2]_29 chrVII:544415-544900 7.6e-06 15_[+2]_64 chrII:405659-406229 7.6e-06 70_[-2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWWMCCACTRVRCYAMV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCYYWWMCCACTRVRCYAMV width=21 seqs=96 chrXIII:259000-259445 ( 42) CGCCTTAACCACTCGGCCAAG 1 chrXII:167719-168234 ( 74) CGCCTTAACCACTCGGCCAAG 1 chrXV:274472-274959 ( 13) CGCCTTAACCACTCGGCCACT 1 chrIV:1150725-1151173 ( 17) CGCCTTAACCACTCGGCCACT 1 chrXVI:879923-880729 ( 68) GCCTTAACCAACTGGGCCAAG 1 chrXIV:602083-602552 ( 50) GCCTTAACCAACTGGGCCAAG 1 chrXIV:569697-570164 ( 35) GCCTTAACCAACTGGGCCAAG 1 chrVII:738803-739550 ( 1) GCCTTAACCAACTGGGCCAAG 1 chrIX:183289-183700 ( 44) GCCTTAACCAACTGGGCCAAG 1 chrII:197191-197820 ( 44) GCCTTAACCAACTGGGCCAAG 1 chrXVI:689340-689851 ( 25) CGCCTTAACCACTCGGCCATA 1 chrXII:592290-592968 ( 15) GCCTTAAACCACTCGGCCAAA 1 chrX:617723-618127 ( 49) GCCTTAAACCACTCGGCCAAA 1 chrIII:227775-228212 ( 4) CGCCTTAACCACTCGGCCATA 1 chrXVI:856741-857112 ( 31) CGCGCTACCGACTACGCCACA 1 chrXII:962815-963321 ( 12) GCCTTAGACCACTCGGCCAAC 1 chrXII:656839-657209 ( 7) CGCGCTACCGACTACGCCACA 1 chrX:424295-424720 ( 33) GCCTTAGACCACTCGGCCAAC 1 chrVII:774114-774607 ( 44) CGCGCTACCGACTACGCCACA 1 chrXI:490687-491199 ( 80) CGCCGTGACCATTGGGCCACG 1 chrV:492223-492554 ( 61) CGCCGTGACCATTGGGCCACG 1 chrXV:663472-664254 ( 47) GCCATAACCGACTAGACCACG 1 chrXIII:420326-420897 ( 75) GCCATAACCGACTAGACCACG 1 chrXI:307925-308420 ( 70) GCCATAACCGACTAGACCACG 1 chrX:378188-378564 ( 39) GCCATAACCGACTAGACCACG 1 chrVII:823340-823690 ( 22) GCCATAACCGACTAGACCACG 1 chrVII:412063-412603 ( 59) GCCATAACCGACTAGACCACG 1 chrV:469257-469666 ( 51) GCCATAACCGACTAGACCACG 1 chrV:438496-438962 ( 26) GCCATAACCGACTAGACCACG 1 chrXII:605157-605624 ( 67) AGCTCTAACCACTGAGCTACA 1 chrXIV:632422-632878 ( 4) GCCTTAACCAACTTGGCCATG 1 chrIII:127584-127884 ( 37) GCCTTAACCAACTTGGCCATG 1 chrVII:115332-115719 ( 18) CGCTCTACCAACTGAGCTAAC 1 chrXV:353908-354312 ( 28) CGCCTTACCAACTTGGCCATA 1 chrXIV:104614-105101 ( 3) CGCCTTACCAACTTGGCCATA 1 chrVIII:115969-116421 ( 9) CGCCTTACCAACTTGGCCATA 1 chrXI:83978-84421 ( 64) GCATTAGACCACTCGGCCAAC 1 chrXVI:581847-582355 ( 16) CGCGCTACCGATTGCGCCAAC 1 chrX:414757-415220 ( 33) CGCGCTACCGATTGCGCCAAC 1 chrIV:1201514-1202002 ( 47) CGCGCTACCGATTGCGCCAAC 1 chrIII:151130-151577 ( 28) CGCGCTACCGATTGCGCCAAC 1 chrXIV:374661-375097 ( 45) CGCTCTCCCAACTGAGCTAAG 1 chrXII:628143-628635 ( 49) GCCTTAGACCGCTCGGCCAAA 1 chrVII:857090-857854 ( 44) GCCTTAGACCGCTCGGCCAAA 1 chrVII:205313-205764 ( 38) GCCTTAGACCGCTCGGCCAAA 1 chrIII:74-1023 ( 49) CCCGTATCCAACTCCACTACC 1 chrXVI:860121-860699 ( 24) GGATTTTACCACTAAACCACT 1 chrXVI:572015-572536 ( 49) GGATTTTACCACTAAACCACT 1 chrXV:226436-226895 ( 41) GGATTTTACCACTAAACCACT 1 chrXIII:352089-352483 ( 49) CGCTCTCCCAACTGAGCTAAA 1 chrX:531493-532219 ( 27) GGATTTTACCACTAAACCACT 1 chrX:396618-396950 ( 37) GGATTTTACCACTAAACCACT 1 chrVIII:358285-358797 ( 53) CGCTCTCCCAACTGAGCTAAA 1 chrVIII:237757-238134 ( 19) CGCTCTCCCAACTGAGCTAAA 1 chrIII:142485-142982 ( 63) GGATTTTACCACTAAACCACT 1 chrII:36243-36593 ( 35) CGCTCTCCCAACTGAGCTAAA 1 chrXV:464089-464807 ( 57) GAATCATACCACTAGACCACA 1 chrXIII:195932-196303 ( 78) GAATCATACCACTAGACCACA 1 chrI:138977-139360 ( 39) GAATCATACCACTAGACCACA 1 chrX:517655-518076 ( 44) GCGCGCTTCCACTGCGCCACG 1 chrV:99898-100326 ( 76) GCGCGCTTCCACTGCGCCACG 1 chrIII:149573-150232 ( 73) GCGCGCTTCCACTGCGCCACG 1 chrVIII:556611-556765 ( 21) CCCATATCCAACTCCACTACC 1 chrXVI:744081-744588 ( 5) ACGCTCTACCACTAAGCTAAG 1 chrVIII:466698-467300 ( 46) ACGCTCTACCACTAAGCTAAG 1 chrVII:1004040-1004418 ( 42) ACGCTCTACCACTAAGCTAAG 1 chrVII:661531-661947 ( 65) ACGCTCTACCACTAAGCTAAG 1 chrXV:288020-288396 ( 39) CCTTAAACCAACTTGGCTACC 1 chrXIII:837686-838236 ( 22) CCTTAAACCAACTTGGCTACC 1 chrX:542764-543269 ( 53) CCTTAAACCAACTTGGCTACC 1 chrX:354007-354503 ( 44) CCTTAAACCAACTTGGCTACC 1 chrXIII:572614-573298 ( 24) CGCTCTTCCTACTGAGCTACT 1 chrIV:1175595-1176093 ( 40) CGCTCTTCCTACTGAGCTACT 1 chrIV:1256885-1257282 ( 21) AATTCTAACCACTGAACCACT 1 chrXIII:747758-748145 ( 37) ACGCGTTGCCATTACGCCACG 1 chrXIII:131576-132120 ( 73) ACGCGTTGCCATTACGCCACG 1 chrX:374211-374914 ( 40) ACGCGTTGCCATTACGCCACG 1 chrVII:736202-736551 ( 19) ACGCGTTGCCATTACGCCACG 1 chrXI:302703-303209 ( 17) AAGCTCTACCATTGAGCCACC 1 chrVII:287239-287708 ( 7) AAGCTCTACCATTGAGCCACC 1 chrXV:110861-111206 ( 25) GATGATAACCACTACACTAAC 1 chrXIV:96043-96517 ( 57) GATGATAACCACTACACTAAC 1 chrVII:779365-779905 ( 36) GATGATAACCACTACACTAAC 1 chrXVI:435613-436273 ( 46) CTGCGCTACCACTGCGCCATA 1 chrII:642862-643246 ( 49) CTGCGCTACCACTGCGCCATA 1 chrXIII:807983-808570 ( 66) AGTGATAACCACTACACTATA 1 chrXII:448524-448851 ( 59) AGTGATAACCACTACACTATA 1 chrIV:802571-803012 ( 36) AGTGATAACCACTACACTATA 1 chrIV:645011-645376 ( 56) AGTGATAACCACTACACTATA 1 chrII:350607-351041 ( 58) AGTGATAACCACTACACTATA 1 chrII:326545-327133 ( 51) GTCTTGAACCACTGGACCATT 1 chrXII:426929-427444 ( 1) CATTCTGACCATTAAACTATC 1 chrXI:513188-513607 ( 31) CATTCTGACCATTAAACTATC 1 chrX:355186-355735 ( 51) CATTCTGACCATTAAACTATC 1 chrVII:544415-544900 ( 16) CATTCTGACCATTAAACTATC 1 chrII:405659-406229 ( 71) CATTCTGACCATTAAACTATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWWMCCACTRVRCYAMV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 40160 bayes= 8.3631 E= 1.9e-189 -82 111 115 -1323 -110 118 107 -332 -158 155 -27 -73 -173 52 -18 59 -132 47 -72 68 14 -72 -417 77 74 -185 -48 -10 71 115 -218 -332 -1323 241 -1323 -1323 -38 163 -27 -390 164 -1323 -259 -1323 -1323 213 -1323 -82 -1323 -1323 -1323 168 45 -18 73 -173 -15 52 125 -1323 18 -1323 178 -1323 -1323 241 -1323 -1323 -1323 182 -1323 10 168 -1323 -1323 -1323 14 125 -1323 -58 -10 41 82 -132 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWWMCCACTRVRCYAMV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 96 E= 1.9e-189 0.177083 0.406250 0.416667 0.000000 0.145833 0.427083 0.395833 0.031250 0.104167 0.552083 0.156250 0.187500 0.093750 0.270833 0.166667 0.468750 0.125000 0.260417 0.114583 0.500000 0.343750 0.114583 0.010417 0.531250 0.520833 0.052083 0.135417 0.291667 0.510417 0.416667 0.041667 0.031250 0.000000 1.000000 0.000000 0.000000 0.239583 0.583333 0.156250 0.020833 0.968750 0.000000 0.031250 0.000000 0.000000 0.822917 0.000000 0.177083 0.000000 0.000000 0.000000 1.000000 0.427083 0.166667 0.312500 0.093750 0.281250 0.270833 0.447917 0.000000 0.354167 0.000000 0.645833 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.343750 0.447917 0.000000 0.208333 0.291667 0.250000 0.333333 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYWWMCCACTRVRCYAMV MEME-2 regular expression -------------------------------------------------------------------------------- [GC][CG]C[TC][TC][TA][AT][AC]C[CA]ACT[AG][GAC][GA]C[CT]A[CAT][GAC] -------------------------------------------------------------------------------- Time 446.58 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGATGTGATAGCCGTTACACTATAT MEME-3 width = 26 sites = 9 llr = 297 E-value = 4.6e-045 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGATGTGATAGCCGTTACACTATAT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::1a::::a:a::::::a:a::a:9: pos.-specific C :1::1:::::::aa:1::a:a::2:: probability G a:9::a:a:::a::a::::::::::1 matrix T :9::9:a::a:::::9a::::a:819 bits 2.4 * * * **** * * 2.2 * * * **** * * 1.9 * * * * **** * * 1.7 * ** ********** ******* Relative 1.4 * ** ********** ******* Entropy 1.2 *********************** ** (47.6 bits) 1.0 ************************** 0.7 ************************** 0.5 ************************** 0.2 ************************** 0.0 -------------------------- Multilevel GTGATGTGATAGCCGTTACACTATAT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGATGTGATAGCCGTTACACTATAT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------- chrXIII:290473-291106 - 66 4.45e-16 GGTGAAAGC GTGATGTGATAGCCGTTACACTATAT CGGATTATAT chrXI:140673-141478 + 35 4.45e-16 CGGTGAAAGC GTGATGTGATAGCCGTTACACTATAT CGGATTACAA chrX:115793-116215 + 27 4.45e-16 CGGTGAAAGC GTGATGTGATAGCCGTTACACTATAT CGGATTATAA chrV:176852-177424 - 15 4.45e-16 CGGTGAAAGC GTGATGTGATAGCCGTTACACTATAT CGGATCAAAG chrIX:370224-370630 - 44 4.45e-16 CGGTGAAAGC GTGATGTGATAGCCGTTACACTATAT CGGATTATAA chrII:644963-645418 - 31 4.45e-16 CGGTGAAAGC GTGATGTGATAGCCGTTACACTATAT CGGATAATAA chrIX:197256-198010 - 13 7.13e-16 CGGTGAGAAC GTGATGTGATAGCCGTTACACTACAT CGGATTTGAT chrIV:1016962-1017489 + 74 7.13e-16 CGGTGAGAAC GTGATGTGATAGCCGTTACACTACAT C chrIV:1075305-1075743 + 41 3.16e-13 CCGTGTGAAG GCAACGTGATAGCCGCTACACTATTG GAACAATATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGATGTGATAGCCGTTACACTATAT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:290473-291106 4.4e-16 65_[-3]_9 chrXI:140673-141478 4.4e-16 34_[+3]_40 chrX:115793-116215 4.4e-16 26_[+3]_48 chrV:176852-177424 4.4e-16 14_[-3]_60 chrIX:370224-370630 4.4e-16 43_[-3]_31 chrII:644963-645418 4.4e-16 30_[-3]_44 chrIX:197256-198010 7.1e-16 12_[-3]_62 chrIV:1016962-1017489 7.1e-16 73_[+3]_1 chrIV:1075305-1075743 3.2e-13 40_[+3]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGATGTGATAGCCGTTACACTATAT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGATGTGATAGCCGTTACACTATAT width=26 seqs=9 chrXIII:290473-291106 ( 66) GTGATGTGATAGCCGTTACACTATAT 1 chrXI:140673-141478 ( 35) GTGATGTGATAGCCGTTACACTATAT 1 chrX:115793-116215 ( 27) GTGATGTGATAGCCGTTACACTATAT 1 chrV:176852-177424 ( 15) GTGATGTGATAGCCGTTACACTATAT 1 chrIX:370224-370630 ( 44) GTGATGTGATAGCCGTTACACTATAT 1 chrII:644963-645418 ( 31) GTGATGTGATAGCCGTTACACTATAT 1 chrIX:197256-198010 ( 13) GTGATGTGATAGCCGTTACACTACAT 1 chrIV:1016962-1017489 ( 74) GTGATGTGATAGCCGTTACACTACAT 1 chrIV:1075305-1075743 ( 41) GCAACGTGATAGCCGCTACACTATTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGATGTGATAGCCGTTACACTATAT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 26 n= 37650 bayes= 12.1644 E= 4.6e-045 -982 -982 241 -982 -982 -76 -982 151 -148 -982 224 -982 168 -982 -982 -982 -982 -76 -982 151 -982 -982 241 -982 -982 -982 -982 168 -982 -982 241 -982 168 -982 -982 -982 -982 -982 -982 168 168 -982 -982 -982 -982 -982 241 -982 -982 241 -982 -982 -982 241 -982 -982 -982 -982 241 -982 -982 -76 -982 151 -982 -982 -982 168 168 -982 -982 -982 -982 241 -982 -982 168 -982 -982 -982 -982 241 -982 -982 -982 -982 -982 168 168 -982 -982 -982 -982 24 -982 132 151 -982 -982 -148 -982 -982 -76 151 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGATGTGATAGCCGTTACACTATAT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 26 nsites= 9 E= 4.6e-045 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.888889 0.111111 0.000000 0.888889 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.888889 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.222222 0.000000 0.777778 0.888889 0.000000 0.000000 0.111111 0.000000 0.000000 0.111111 0.888889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGATGTGATAGCCGTTACACTATAT MEME-3 regular expression -------------------------------------------------------------------------------- GTGATGTGATAGCCGTTACACTA[TC]AT -------------------------------------------------------------------------------- Time 652.96 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71819-73263 7.32e-01 100 chrI:81681-82372 4.00e-01 100 chrI:138977-139360 2.89e-04 38_[-2(3.75e-07)]_41 chrI:141643-141916 2.33e-01 100 chrI:142150-143487 5.02e-01 100 chrI:166173-166633 5.48e-02 100 chrI:180956-181479 1.77e-01 100 chrI:182156-183201 9.24e-01 100 chrII:9355-9988 4.62e-04 7_[-1(1.21e-07)]_63 chrII:36243-36593 8.02e-05 34_[-2(3.04e-07)]_45 chrII:44945-45348 9.29e-01 100 chrII:45669-46332 3.31e-01 100 chrII:59824-61288 2.68e-01 100 chrII:88958-90005 8.34e-01 100 chrII:165080-165446 4.97e-01 100 chrII:167893-168195 5.96e-01 100 chrII:181316-181724 3.38e-01 100 chrII:197191-197820 6.06e-06 43_[-2(8.00e-10)]_36 chrII:226979-227334 4.54e-02 12_[-1(3.55e-05)]_58 chrII:266185-266715 9.03e-07 12_[-1(4.80e-10)]_58 chrII:326545-327133 7.37e-11 10_[+1(2.41e-12)]_10_[+2(5.37e-06)]_\ 29 chrII:332161-333075 4.48e-01 100 chrII:347402-347930 6.05e-04 32_[-1(1.21e-07)]_38 chrII:350607-351041 6.88e-06 56_[-3(7.24e-07)]_18 chrII:405659-406229 1.27e-09 17_[-1(3.21e-11)]_23_[-2(7.61e-06)]_\ 9 chrII:415579-416113 7.12e-01 100 chrII:444757-445210 6.18e-01 100 chrII:476901-477745 6.71e-01 100 chrII:592285-593432 6.93e-01 100 chrII:603837-606113 8.78e-01 100 chrII:642862-643246 1.97e-08 10_[+1(3.88e-09)]_8_[+2(2.97e-06)]_\ 31 chrII:644963-645418 6.53e-21 30_[-3(4.45e-16)]_4_[-1(4.23e-12)]_\ 10 chrIII:74-1023 3.74e-04 48_[+2(2.44e-07)]_31 chrIII:81663-82700 8.81e-01 100 chrIII:83038-83209 6.27e-01 100 chrIII:90862-91080 1.75e-01 100 chrIII:123353-123802 3.76e-08 57_[+1(2.41e-12)]_13 chrIII:127584-127884 2.13e-10 36_[-2(2.40e-08)]_10_[-1(9.83e-10)]_\ 3 chrIII:137775-138986 1.65e-01 100 chrIII:142485-142982 1.96e-12 25_[+1(5.28e-13)]_7_[+2(3.04e-07)]_\ 17 chrIII:149573-150232 1.74e-03 72_[-2(5.08e-07)]_7 chrIII:151130-151577 1.56e-04 27_[+2(8.35e-08)]_52 chrIII:162534-163252 9.34e-02 100 chrIII:163478-163885 2.87e-01 100 chrIII:168018-168534 1.74e-01 100 chrIII:177103-178726 7.08e-01 100 chrIII:227775-228212 2.35e-07 3_[-2(1.22e-09)]_37_[-1(5.17e-05)]_\ 9 chrIII:262739-263134 1.00e+00 100 chrIII:295310-296034 9.11e-01 100 chrIII:315613-316001 2.18e-01 100 chrIV:83436-83821 1.08e-08 2_[-1(5.28e-13)]_68 chrIV:117159-117926 3.52e-01 100 chrIV:129929-130972 4.91e-01 100 chrIV:217088-217514 4.72e-01 100 chrIV:220563-220743 4.01e-01 100 chrIV:221143-222313 5.00e-01 100 chrIV:229553-230703 8.70e-01 100 chrIV:308027-309373 4.89e-01 100 chrIV:321701-321943 8.41e-01 100 chrIV:338852-341939 6.65e-01 100 chrIV:354226-356883 9.88e-01 100 chrIV:358025-358492 9.53e-01 100 chrIV:359208-359781 1.45e-01 100 chrIV:382027-384826 3.50e-02 100 chrIV:410187-410790 3.30e-01 100 chrIV:411136-411997 9.67e-01 100 chrIV:434101-435133 5.09e-01 100 chrIV:437536-439015 6.03e-01 100 chrIV:488474-489105 6.80e-08 65_[+1(2.41e-12)]_5 chrIV:490947-491237 2.75e-01 100 chrIV:519656-520248 7.65e-01 100 chrIV:520684-521108 9.39e-01 100 chrIV:525453-527471 5.92e-01 100 chrIV:568479-569209 8.90e-01 100 chrIV:578924-580682 7.99e-01 100 chrIV:619713-620218 7.54e-05 61_[+1(5.62e-09)]_9 chrIV:645011-645376 1.34e-14 17_[+1(9.41e-12)]_4_[+3(1.27e-07)]_\ 23 chrIV:667652-668207 7.09e-01 100 chrIV:758798-759646 5.69e-01 100 chrIV:802571-803012 2.17e-07 31_[+3(1.27e-07)]_43 chrIV:835769-836257 4.80e-01 100 chrIV:884259-884623 7.00e-06 64_[-1(5.26e-10)]_6 chrIV:915120-916162 9.10e-01 100 chrIV:946152-946590 2.00e-05 41_[-1(7.48e-09)]_29 chrIV:974359-975127 7.38e-01 100 chrIV:980740-981169 3.55e-01 100 chrIV:992685-993184 9.40e-01 100 chrIV:1013760-1013924 5.19e-01 100 chrIV:1016962-1017489 7.64e-21 39_[+1(4.23e-12)]_4_[+3(7.13e-16)]_\ 1 chrIV:1075305-1075743 4.12e-20 5_[+1(9.91e-13)]_5_[+3(3.16e-13)]_\ 34 chrIV:1094915-1095673 4.35e-01 100 chrIV:1150725-1151173 3.02e-06 16_[+2(5.17e-10)]_63 chrIV:1175595-1176093 7.29e-10 39_[-2(8.95e-07)]_9_[-1(1.65e-10)]_\ 1 chrIV:1201514-1202002 3.38e-04 46_[-2(8.35e-08)]_33 chrIV:1233398-1234266 5.93e-01 100 chrIV:1236451-1238005 6.61e-01 100 chrIV:1256885-1257282 4.97e-03 20_[+2(1.16e-06)]_59 chrIV:1300066-1300357 7.66e-01 100 chrIV:1300558-1301320 3.84e-01 100 chrIV:1305114-1305796 6.73e-01 100 chrIV:1352143-1353412 8.54e-02 100 chrIV:1354577-1355553 2.20e-01 100 chrIV:1355763-1356005 9.55e-01 100 chrIV:1359335-1361233 7.55e-01 100 chrIV:1401019-1402056 6.69e-01 100 chrIV:1450605-1451207 9.81e-01 100 chrIV:1461492-1461839 2.44e-01 100 chrIV:1489090-1489907 9.13e-01 100 chrIX:68265-68480 7.75e-01 100 chrIX:68675-68976 3.46e-01 100 chrIX:99644-100123 3.49e-01 100 chrIX:174564-175908 9.90e-01 100 chrIX:183289-183700 1.34e-14 3_[+1(2.41e-12)]_10_[+2(8.00e-10)]_\ 36 chrIX:197256-198010 7.64e-21 12_[-3(7.13e-16)]_4_[-1(4.23e-12)]_\ 28 chrIX:210511-211278 6.83e-01 100 chrIX:248572-248998 6.65e-01 100 chrIX:254236-254541 5.20e-01 100 chrIX:257372-257759 2.44e-01 100 chrIX:299970-300513 4.84e-09 44_[+1(7.25e-12)]_26 chrIX:315999-317643 8.85e-01 100 chrIX:323620-323809 1.40e-01 100 chrIX:323986-324380 1.17e-01 100 chrIX:325742-326185 7.03e-01 100 chrIX:336078-336620 4.03e-06 1_[+2(3.34e-05)]_35_[+1(4.16e-08)]_\ 13 chrIX:370224-370630 7.93e-13 43_[-3(4.45e-16)]_31 chrV:27700-29867 5.16e-02 52_[+3(3.06e-05)]_22 chrV:53529-53960 7.90e-01 100 chrV:61103-62154 1.83e-01 100 chrV:67121-68874 2.06e-01 100 chrV:69136-69305 4.56e-02 55_[-1(9.28e-05)]_15 chrV:85131-86929 2.64e-01 100 chrV:99898-100326 3.26e-03 75_[-2(5.08e-07)]_4 chrV:117621-118318 6.08e-01 100 chrV:130803-131375 2.49e-08 50_[+1(1.22e-11)]_20 chrV:135182-136046 1.27e-01 100 chrV:138447-140904 6.46e-02 100 chrV:176852-177424 6.53e-21 14_[-3(4.45e-16)]_4_[-1(4.23e-12)]_\ 26 chrV:249367-249526 7.52e-01 100 chrV:249683-250522 1.63e-01 100 chrV:270396-270820 9.63e-01 100 chrV:288143-288739 9.38e-02 59_[+1(5.17e-05)]_11 chrV:305823-306928 7.98e-01 100 chrV:311724-312309 1.16e-07 64_[+1(5.56e-12)]_6 chrV:322130-323065 9.89e-01 100 chrV:354672-355454 1.72e-01 100 chrV:362194-362466 4.88e-01 100 chrV:396127-396571 9.09e-01 100 chrV:423048-424322 3.75e-01 100 chrV:430994-432021 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chrXV:1027885-1029083 2.10e-01 100 chrXVI:55860-56421 1.32e-01 100 chrXVI:75481-76771 7.96e-01 100 chrXVI:172891-174103 9.81e-01 100 chrXVI:188679-189239 9.92e-01 100 chrXVI:210013-210784 9.36e-01 100 chrXVI:282053-282964 4.28e-01 100 chrXVI:302675-302942 9.69e-01 100 chrXVI:303102-304637 2.27e-01 100 chrXVI:338483-339151 7.68e-01 100 chrXVI:378667-378986 2.47e-01 100 chrXVI:406216-407738 9.67e-01 100 chrXVI:435613-436273 1.97e-08 7_[+1(3.88e-09)]_8_[+2(2.97e-06)]_\ 34 chrXVI:519678-520520 5.45e-01 100 chrXVI:559910-560290 8.64e-01 100 chrXVI:572015-572536 1.16e-03 48_[-2(3.04e-07)]_31 chrXVI:581847-582355 6.32e-12 15_[-2(8.35e-08)]_9_[-1(7.25e-12)]_\ 25 chrXVI:622027-622838 3.15e-01 100 chrXVI:640619-641539 3.58e-01 100 chrXVI:689340-689851 1.49e-07 24_[-2(1.22e-09)]_18_[-1(5.17e-05)]_\ 7 chrXVI:699629-700380 5.17e-01 100 chrXVI:731912-732668 8.37e-01 100 chrXVI:744081-744588 5.05e-09 4_[-2(6.79e-07)]_8_[-1(8.02e-09)]_\ 37 chrXVI:769019-769465 1.06e-05 22_[+1(1.27e-09)]_48 chrXVI:775663-776140 5.11e-01 100 chrXVI:794436-794825 9.92e-01 100 chrXVI:810579-811718 2.20e-01 100 chrXVI:819314-820249 8.92e-01 100 chrXVI:856741-857112 2.14e-11 30_[-2(2.69e-09)]_9_[-1(4.51e-09)]_\ 10 chrXVI:860121-860699 2.10e-12 23_[-2(3.04e-07)]_7_[-1(5.28e-13)]_\ 19 chrXVI:879923-880729 3.03e-14 27_[+1(2.41e-12)]_10_[+2(8.00e-10)]_\ 12 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************