******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--GAL11/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:347416-347929 1.0000 100 chrVIII:410958-411786 1.0000 100 chrXIV:721150-723208 1.0000 100 chrVII:310415-312947 1.0000 100 chrXI:490781-491226 1.0000 100 chrI:166164-166560 1.0000 100 chrIV:1352329-1353418 1.0000 100 chrXVI:821557-824278 1.0000 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100 chrX:348825-348925 1.0000 100 chrIV:117164-118227 1.0000 100 chrXIII:650745-652999 1.0000 100 chrX:540945-541045 1.0000 100 chrVII:371207-371600 1.0000 100 chrXII:241327-241471 1.0000 100 chrVII:882423-884593 1.0000 100 chrIII:82148-82685 1.0000 100 chrIII:177073-179449 1.0000 100 chrV:354693-355199 1.0000 100 chrVIII:105015-105580 1.0000 100 chrXII:1051927-1052231 1.0000 100 chrXI:518789-521058 1.0000 100 chrXII:300086-300904 1.0000 100 chrX:517683-517783 1.0000 100 chrXV:79746-80121 1.0000 100 chrXVI:66943-67512 1.0000 100 chrXIII:123002-124218 1.0000 100 chrX:622322-622422 1.0000 100 chrIV:1354494-1356081 1.0000 100 chrV:152054-153261 1.0000 100 chrXII:645870-646283 1.0000 100 chrXI:379683-380050 1.0000 100 chrXV:274489-274979 1.0000 100 chrXIII:631841-634875 1.0000 100 chrVII:23794-25804 1.0000 100 chrXII:592346-592969 1.0000 100 chrXVI:581856-582494 1.0000 100 chrXIII:145858-147229 1.0000 100 chrXV:234201-234846 1.0000 100 chrXII:252997-255256 1.0000 100 chrI:71614-73639 1.0000 100 chrV:434388-435123 1.0000 100 chrXV:300851-301309 1.0000 100 chrV:135204-136033 1.0000 100 chrVII:786767-788718 1.0000 100 chrXIV:61373-64537 1.0000 100 chrXI:463434-463822 1.0000 100 chrVII:766125-766401 1.0000 100 chrXIV:715245-717166 1.0000 100 chrXV:977210-979172 1.0000 100 chrV:491051-491487 1.0000 100 chrX:354028-354128 1.0000 100 chrXVI:811033-811328 1.0000 100 chrIX:316154-317630 1.0000 100 chrIV:928558-929085 1.0000 100 chrXIV:215492-217115 1.0000 100 chrVII:185505-185793 1.0000 100 chrVII:316460-317665 1.0000 100 chrXII:875213-875667 1.0000 100 chrVII:411657-412565 1.0000 100 chrXIII:195927-196298 1.0000 100 chrXVI:828862-829355 1.0000 100 chrV:298739-299831 1.0000 100 chrVII:973112-973977 1.0000 100 chrXV:446682-447306 1.0000 100 chrXII:214655-215064 1.0000 100 chrXIII:463342-463899 1.0000 100 chrVII:440239-441131 1.0000 100 chrV:438491-439011 1.0000 100 chrVII:857074-857594 1.0000 100 chrIV:1256878-1257286 1.0000 100 chrVIII:20942-21308 1.0000 100 chrVII:930885-931607 1.0000 100 chrXIV:241203-241770 1.0000 100 chrXV:216290-216688 1.0000 100 chrVII:328379-329262 1.0000 100 chrIV:930505-930929 1.0000 100 chrXVI:404532-408276 1.0000 100 chrII:326569-327195 1.0000 100 chrVI:30170-30546 1.0000 100 chrIX:68661-69590 1.0000 100 chrXI:163354-164756 1.0000 100 chrIV:129283-130952 1.0000 100 chrX:90017-90117 1.0000 100 chrX:424276-424376 1.0000 100 chrXV:464079-464849 1.0000 100 chrII:477050-477764 1.0000 100 chrXIII:378775-379586 1.0000 100 chrXI:83974-84403 1.0000 100 chrVII:828466-828985 1.0000 100 chrXIII:808069-808522 1.0000 100 chrXIV:569528-570153 1.0000 100 chrXIV:619747-620036 1.0000 100 chrX:378232-378332 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--GAL11/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--GAL11/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--GAL11/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.303 C 0.197 G 0.197 T 0.303 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--GAL11/background): A 0.309 C 0.191 G 0.191 T 0.309 ******************************************************************************** ******************************************************************************** MOTIF YCDKRRGRTCMSSGGTTCGATYCC MEME-1 width = 24 sites = 68 llr = 1246 E-value = 2.4e-235 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCDKRRGRTCMSSGGTTCGATYCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::2246132:3112::::2a2::: pos.-specific C 381:::1:185441:::a::24a7 probability G 23445377::2457a:::8:1::1 matrix T 5:241:1:7212:::aa:::56:2 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * ** * * Relative 1.4 * * ****** * Entropy 1.2 * * * ****** * (26.4 bits) 1.0 * ** * ******** ** 0.7 * *** * ******** *** 0.5 ** ***************** *** 0.2 ************************ 0.0 ------------------------ Multilevel TCGGGAGGTCCCGGGTTCGATTCC consensus CGTTAG AATAGC A CC sequence A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRRGRTCMSSGGTTCGATYCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------ chrXII:1051927-1052231 - 53 3.23e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCC GCTAGAGACC chrVII:738909-739481 + 16 3.23e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCC GCTAGAGACC chrXIV:602111-602545 + 73 3.23e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCC GCTA chrV:550868-551692 - 66 3.23e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCC GCTAGAGACC chrXVI:819285-819937 + 7 3.23e-11 TAATAA CGCGGGGATCAGCGGTTCGATCCC GCTAGAGACC chrV:354693-355199 + 75 3.76e-11 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCC CC chrXI:140677-141471 - 5 3.76e-11 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCC CCGT chrV:487134-487564 - 43 3.76e-11 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCC CCGTATCGGA chrXIII:290537-291113 + 63 3.76e-11 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCC CCGTATCGGA chrIV:1017004-1017477 - 28 3.76e-11 CACGTTCTCA CCGTGGAGACCGGGGTTCGACTCC CCGCTTCGGA chrV:176915-177449 + 4 3.76e-11 TCA CCGTGGAGACCGGGGTTCGACTCC CCGTATCGGA chrIV:992699-993078 + 30 5.90e-11 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrX:396495-396595 - 66 5.90e-11 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrXV:281979-282402 + 60 5.90e-11 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrIV:83433-83800 + 18 5.90e-11 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrX:531616-531716 + 8 5.90e-11 GTTGCCA TCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrVI:180675-181373 - 11 5.90e-11 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrVII:774164-774608 + 51 2.04e-10 CCCTTAGCAT GGGAGAGGTCTCCGGTTCGATTCC GGACTCGTCC chrXVI:856726-857189 + 33 2.04e-10 CCCTTAGCAT GGGAGAGGTCTCCGGTTCGATTCC GGACTCGTCC chrXI:517783-518282 + 44 2.04e-10 CCCTTAGCAT GGGAGAGGTCTCCGGTTCGATTCC GGACTCGTCC chrXI:219785-220115 + 33 2.04e-10 CCCTTAGCAT GGGAGAGGTCTCCGGTTCGATTCC GGACTCGTCC chrV:435587-435997 - 21 2.64e-10 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrIX:299993-300521 - 32 2.64e-10 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrXIII:480414-480814 - 68 2.64e-10 GACTCTTAA TCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrXII:875213-875667 + 47 3.40e-10 AGCAAGGATA CCGAAATGTCAGGGGTTCGAGCCC CCTATGAGGA chrXV:438461-438956 + 46 3.40e-10 AGCAAGGATA CCGAAATGTCAGGGGTTCGAGCCC CCTATGAGGA chrXVI:768989-769448 - 50 3.40e-10 AGCAAGGATA CCGAAATGTCAGGGGTTCGAGCCC CCTATGAGGA chrIII:168078-168519 - 64 3.85e-10 TCGGTTTTGA TCCGGACAACCCCGGTTCGAATCC GGGTAGGACC chrX:233696-233796 + 58 4.92e-10 TGGCTACGAA CCAGGAGATTCCAGGTTCGAGTCC TGGCGGGGAA chrXV:853571-854869 - 28 4.92e-10 TCCCTTGCAA GGAAGAGGTCATCGGTTCGATTCC GGTTGCGTCC chrXIII:195927-196298 - 17 5.54e-10 GACAAAGCAT GCGAGAGGCCCTGGGTTCAATTCC CAGCTCGCCC chrV:130795-131396 - 48 7.88e-10 TCGGTTTTGA TCCGAACAACCCCGGTTCGAATCC GGGTAAGACC chrVII:828466-828985 - 59 9.90e-10 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrX:374200-374300 - 23 9.90e-10 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrX:378232-378332 + 48 1.71e-09 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCT GGGCGAAATC chrV:438491-439011 + 38 1.71e-09 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCT GGGCGAAATC chrXI:307980-308423 - 4 1.71e-09 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCT GGG chrV:469267-469720 + 53 1.71e-09 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCT GGGCGAAATC chrVII:823336-823694 + 56 1.71e-09 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCT GGGCGAAATC chrXV:353818-354292 - 47 4.29e-09 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCC GATTGGAAGC chrII:266194-266684 + 27 4.29e-09 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCC GATTGGAAGC chrX:354028-354128 + 73 4.72e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCG CCCC chrVI:167249-167721 + 56 4.72e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCG CCCCCGGGAG chrXIII:168681-169052 + 33 4.72e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCG CCCCCGGGAG chrXIII:837727-838193 + 72 4.72e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCG CCCCC chrIV:946143-946603 + 43 4.72e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCG CCCCCGGGAG chrXIII:808069-808522 - 12 5.20e-09 TCGGTTCTGA TCCGAACAACCCCAGTTCGAATCC GGGTGGGACC chrVII:287057-287719 - 23 5.20e-09 AAGATTGCAA TCGAAGGGTTGCAGGTTCAATTCC TGTCCGTTTC chrX:415730-415830 - 20 5.20e-09 AAGATTGCAA TCGAAGGGTTGCAGGTTCAATTCC TGTCCGTTTC chrXI:302736-303213 + 65 5.20e-09 AAGATTGCAA TCGAAGGGTTGCAGGTTCAATTCC TGTCCGTTTC chrXIV:95993-96510 - 51 5.71e-09 CACCCTTCCA AGGTGGGGACACGGGTTCGATTCT CGTACCGCTC chrVII:779409-779928 + 35 5.71e-09 CACCCTTCCA AGGTGGGGACACGGGTTCGATTCT CGTACCGCTC chrIV:619727-620243 - 45 6.27e-09 TGGCTACGAA CCAGAAGATTCCAGGTTCAAGTCC TGGCGGGGAA chrV:492165-492551 - 55 6.27e-09 TGGCTACGAA CCAGAAGATTCCAGGTTCAAGTCC TGGCGGGGAA chrXI:490781-491226 + 53 6.27e-09 TGGCTACGAA CCAGAAGATTCCAGGTTCAAGTCC TGGCGGGGAA chrXV:976276-976735 + 4 9.88e-09 TAA TCTGAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrIV:1175630-1176141 + 32 9.88e-09 AGTCTCATAA TCTGAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrX:390850-390950 - 51 9.88e-09 AGTCTCATAA TCTGAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrIV:1095175-1095677 - 5 9.88e-09 GGTCAAGATA TCTGGAGGTCCTGTGTTCGATCCA CAGA chrVIII:358286-358747 - 23 9.88e-09 GGTCAAGTTA TCTGGAGGTCCTGTGTTCGATCCA CAGAATTCGC chrXIII:572625-573142 - 61 9.88e-09 AGTCTCATAA TCTGAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrVII:730972-731433 + 24 7.89e-08 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCT CACTGGGGTC chrXIV:632444-632842 + 45 7.89e-08 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCT CACTGGGGTC chrXVI:338475-339317 - 13 1.16e-07 GGGCTCATAA CCCTGATGTCCTCGGATCGAAACC GAGCGGCGCT chrIII:149733-150198 + 42 1.16e-07 GGGCTCATAA CCCTGATGTCCTCGGATCGAAACC GAGCGGCGCT chrXIII:463342-463899 + 21 1.67e-07 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCC CCGTCGCGGA chrIV:568721-569255 + 63 1.67e-07 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCC CCGTCACGGA chrIX:336117-336638 - 33 1.67e-07 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCC CCGTCGCGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRRGRTCMSSGGTTCGATYCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:1051927-1052231 3.2e-11 52_[-1]_24 chrVII:738909-739481 3.2e-11 15_[+1]_61 chrXIV:602111-602545 3.2e-11 72_[+1]_4 chrV:550868-551692 3.2e-11 65_[-1]_11 chrXVI:819285-819937 3.2e-11 6_[+1]_70 chrV:354693-355199 3.8e-11 74_[+1]_2 chrXI:140677-141471 3.8e-11 4_[-1]_72 chrV:487134-487564 3.8e-11 42_[-1]_34 chrXIII:290537-291113 3.8e-11 62_[+1]_14 chrIV:1017004-1017477 3.8e-11 27_[-1]_49 chrV:176915-177449 3.8e-11 3_[+1]_73 chrIV:992699-993078 5.9e-11 29_[+1]_47 chrX:396495-396595 5.9e-11 65_[-1]_11 chrXV:281979-282402 5.9e-11 59_[+1]_17 chrIV:83433-83800 5.9e-11 17_[+1]_59 chrX:531616-531716 5.9e-11 7_[+1]_69 chrVI:180675-181373 5.9e-11 10_[-1]_66 chrVII:774164-774608 2e-10 50_[+1]_26 chrXVI:856726-857189 2e-10 32_[+1]_44 chrXI:517783-518282 2e-10 43_[+1]_33 chrXI:219785-220115 2e-10 32_[+1]_44 chrV:435587-435997 2.6e-10 20_[-1]_56 chrIX:299993-300521 2.6e-10 31_[-1]_45 chrXIII:480414-480814 2.6e-10 67_[-1]_9 chrXII:875213-875667 3.4e-10 46_[+1]_30 chrXV:438461-438956 3.4e-10 45_[+1]_31 chrXVI:768989-769448 3.4e-10 49_[-1]_27 chrIII:168078-168519 3.8e-10 63_[-1]_13 chrX:233696-233796 4.9e-10 57_[+1]_19 chrXV:853571-854869 4.9e-10 27_[-1]_49 chrXIII:195927-196298 5.5e-10 16_[-1]_60 chrV:130795-131396 7.9e-10 47_[-1]_29 chrVII:828466-828985 9.9e-10 58_[-1]_18 chrX:374200-374300 9.9e-10 22_[-1]_54 chrX:378232-378332 1.7e-09 47_[+1]_29 chrV:438491-439011 1.7e-09 37_[+1]_39 chrXI:307980-308423 1.7e-09 3_[-1]_73 chrV:469267-469720 1.7e-09 52_[+1]_24 chrVII:823336-823694 1.7e-09 55_[+1]_21 chrXV:353818-354292 4.3e-09 46_[-1]_30 chrII:266194-266684 4.3e-09 26_[+1]_50 chrX:354028-354128 4.7e-09 72_[+1]_4 chrVI:167249-167721 4.7e-09 55_[+1]_21 chrXIII:168681-169052 4.7e-09 32_[+1]_44 chrXIII:837727-838193 4.7e-09 71_[+1]_5 chrIV:946143-946603 4.7e-09 42_[+1]_34 chrXIII:808069-808522 5.2e-09 11_[-1]_65 chrVII:287057-287719 5.2e-09 22_[-1]_54 chrX:415730-415830 5.2e-09 19_[-1]_57 chrXI:302736-303213 5.2e-09 64_[+1]_12 chrXIV:95993-96510 5.7e-09 50_[-1]_26 chrVII:779409-779928 5.7e-09 34_[+1]_42 chrIV:619727-620243 6.3e-09 44_[-1]_32 chrV:492165-492551 6.3e-09 54_[-1]_22 chrXI:490781-491226 6.3e-09 52_[+1]_24 chrXV:976276-976735 9.9e-09 3_[+1]_73 chrIV:1175630-1176141 9.9e-09 31_[+1]_45 chrX:390850-390950 9.9e-09 50_[-1]_26 chrIV:1095175-1095677 9.9e-09 4_[-1]_72 chrVIII:358286-358747 9.9e-09 22_[-1]_54 chrXIII:572625-573142 9.9e-09 60_[-1]_16 chrVII:730972-731433 7.9e-08 23_[+1]_53 chrXIV:632444-632842 7.9e-08 44_[+1]_32 chrXVI:338475-339317 1.2e-07 12_[-1]_64 chrIII:149733-150198 1.2e-07 41_[+1]_35 chrXIII:463342-463899 1.7e-07 20_[+1]_56 chrIV:568721-569255 1.7e-07 62_[+1]_14 chrIX:336117-336638 1.7e-07 32_[-1]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRRGRTCMSSGGTTCGATYCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCDKRRGRTCMSSGGTTCGATYCC width=24 seqs=68 chrXII:1051927-1052231 ( 53) CGCGGGGATCAGCGGTTCGATCCC 1 chrVII:738909-739481 ( 16) CGCGGGGATCAGCGGTTCGATCCC 1 chrXIV:602111-602545 ( 73) CGCGGGGATCAGCGGTTCGATCCC 1 chrV:550868-551692 ( 66) CGCGGGGATCAGCGGTTCGATCCC 1 chrXVI:819285-819937 ( 7) CGCGGGGATCAGCGGTTCGATCCC 1 chrV:354693-355199 ( 75) CCGTGGAGACCGGGGTTCGACTCC 1 chrXI:140677-141471 ( 5) CCGTGGAGACCGGGGTTCGACTCC 1 chrV:487134-487564 ( 43) CCGTGGAGACCGGGGTTCGACTCC 1 chrXIII:290537-291113 ( 63) CCGTGGAGACCGGGGTTCGACTCC 1 chrIV:1017004-1017477 ( 28) CCGTGGAGACCGGGGTTCGACTCC 1 chrV:176915-177449 ( 4) CCGTGGAGACCGGGGTTCGACTCC 1 chrIV:992699-993078 ( 30) TCGTTGGGCCCCCGGTTCGATTCC 1 chrX:396495-396595 ( 66) TCGTTGGGCCCCCGGTTCGATTCC 1 chrXV:281979-282402 ( 60) TCGTTGGGCCCCCGGTTCGATTCC 1 chrIV:83433-83800 ( 18) TCGTTGGGCCCCCGGTTCGATTCC 1 chrX:531616-531716 ( 8) TCGTTGGGCCCCCGGTTCGATTCC 1 chrVI:180675-181373 ( 11) TCGTTGGGCCCCCGGTTCGATTCC 1 chrVII:774164-774608 ( 51) GGGAGAGGTCTCCGGTTCGATTCC 1 chrXVI:856726-857189 ( 33) GGGAGAGGTCTCCGGTTCGATTCC 1 chrXI:517783-518282 ( 44) GGGAGAGGTCTCCGGTTCGATTCC 1 chrXI:219785-220115 ( 33) GGGAGAGGTCTCCGGTTCGATTCC 1 chrV:435587-435997 ( 21) TCATAAGGTTAGGGGTTCGAGCCC 1 chrIX:299993-300521 ( 32) TCATAAGGTTAGGGGTTCGAGCCC 1 chrXIII:480414-480814 ( 68) TCATAAGGTTAGGGGTTCGAGCCC 1 chrXII:875213-875667 ( 47) CCGAAATGTCAGGGGTTCGAGCCC 1 chrXV:438461-438956 ( 46) CCGAAATGTCAGGGGTTCGAGCCC 1 chrXVI:768989-769448 ( 50) CCGAAATGTCAGGGGTTCGAGCCC 1 chrIII:168078-168519 ( 64) TCCGGACAACCCCGGTTCGAATCC 1 chrX:233696-233796 ( 58) CCAGGAGATTCCAGGTTCGAGTCC 1 chrXV:853571-854869 ( 28) GGAAGAGGTCATCGGTTCGATTCC 1 chrXIII:195927-196298 ( 17) GCGAGAGGCCCTGGGTTCAATTCC 1 chrV:130795-131396 ( 48) TCCGAACAACCCCGGTTCGAATCC 1 chrVII:828466-828985 ( 59) TCAGAAGATTATGGGTTCGACCCC 1 chrX:374200-374300 ( 23) TCAGAAGATTATGGGTTCGACCCC 1 chrX:378232-378332 ( 48) GCAGAACGTCCCCAGTTCGATCCT 1 chrV:438491-439011 ( 38) GCAGAACGTCCCCAGTTCGATCCT 1 chrXI:307980-308423 ( 4) GCAGAACGTCCCCAGTTCGATCCT 1 chrV:469267-469720 ( 53) GCAGAACGTCCCCAGTTCGATCCT 1 chrVII:823336-823694 ( 56) GCAGAACGTCCCCAGTTCGATCCT 1 chrXV:353818-354292 ( 47) TGTGGAGATCATCGGTTCAAATCC 1 chrII:266194-266684 ( 27) TGTGGAGATCATCGGTTCAAATCC 1 chrX:354028-354128 ( 73) TCTTGAGATCGGGCGTTCGACTCG 1 chrVI:167249-167721 ( 56) TCTTGAGATCGGGCGTTCGACTCG 1 chrXIII:168681-169052 ( 33) TCTTGAGATCGGGCGTTCGACTCG 1 chrXIII:837727-838193 ( 72) TCTTGAGATCGGGCGTTCGACTCG 1 chrIV:946143-946603 ( 43) TCTTGAGATCGGGCGTTCGACTCG 1 chrXIII:808069-808522 ( 12) TCCGAACAACCCCAGTTCGAATCC 1 chrVII:287057-287719 ( 23) TCGAAGGGTTGCAGGTTCAATTCC 1 chrX:415730-415830 ( 20) TCGAAGGGTTGCAGGTTCAATTCC 1 chrXI:302736-303213 ( 65) TCGAAGGGTTGCAGGTTCAATTCC 1 chrXIV:95993-96510 ( 51) AGGTGGGGACACGGGTTCGATTCT 1 chrVII:779409-779928 ( 35) AGGTGGGGACACGGGTTCGATTCT 1 chrIV:619727-620243 ( 45) CCAGAAGATTCCAGGTTCAAGTCC 1 chrV:492165-492551 ( 55) CCAGAAGATTCCAGGTTCAAGTCC 1 chrXI:490781-491226 ( 53) CCAGAAGATTCCAGGTTCAAGTCC 1 chrXV:976276-976735 ( 4) TCTGAAGGTCGAGAGTTCGAACCT 1 chrIV:1175630-1176141 ( 32) TCTGAAGGTCGAGAGTTCGAACCT 1 chrX:390850-390950 ( 51) TCTGAAGGTCGAGAGTTCGAACCT 1 chrIV:1095175-1095677 ( 5) TCTGGAGGTCCTGTGTTCGATCCA 1 chrVIII:358286-358747 ( 23) TCTGGAGGTCCTGTGTTCGATCCA 1 chrXIII:572625-573142 ( 61) TCTGAAGGTCGAGAGTTCGAACCT 1 chrVII:730972-731433 ( 24) TCGCAAGATCGTGAGTTCAACCCT 1 chrXIV:632444-632842 ( 45) TCGCAAGATCGTGAGTTCAACCCT 1 chrXVI:338475-339317 ( 13) CCCTGATGTCCTCGGATCGAAACC 1 chrIII:149733-150198 ( 42) CCCTGATGTCCTCGGATCGAAACC 1 chrXIII:463342-463899 ( 21) CGTGCCAGATCGGGGTTCAATTCC 1 chrIV:568721-569255 ( 63) CGTGCCAGATCGGGGTTCAATTCC 1 chrIX:336117-336638 ( 33) CGTGCCAGATCGGGGTTCAATTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRRGRTCMSSGGTTCGATYCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 46200 bayes= 8.634 E= 2.4e-235 -339 83 -24 61 -1273 198 39 -1273 -49 -37 106 -39 -81 -270 121 19 36 -211 130 -181 103 -211 76 -1273 -122 -70 183 -207 13 -1273 179 -1273 -59 -89 -1273 116 -1273 203 -1273 -49 -22 130 11 -239 -239 106 95 -81 -159 111 135 -1273 -81 -137 192 -339 -1273 -1273 239 -1273 -339 -1273 -1273 165 -1273 -1273 -1273 169 -1273 239 -1273 -1273 -59 -1273 206 -1273 169 -1273 -1273 -1273 -93 21 -37 61 -339 100 -1273 93 -1273 239 -1273 -1273 -339 189 -137 -69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRRGRTCMSSGGTTCGATYCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 68 E= 2.4e-235 0.029412 0.338235 0.161765 0.470588 0.000000 0.750000 0.250000 0.000000 0.220588 0.147059 0.397059 0.235294 0.176471 0.029412 0.441176 0.352941 0.397059 0.044118 0.470588 0.088235 0.632353 0.044118 0.323529 0.000000 0.132353 0.117647 0.676471 0.073529 0.338235 0.000000 0.661765 0.000000 0.205882 0.102941 0.000000 0.691176 0.000000 0.779412 0.000000 0.220588 0.264706 0.470588 0.205882 0.058824 0.058824 0.397059 0.367647 0.176471 0.102941 0.411765 0.485294 0.000000 0.176471 0.073529 0.720588 0.029412 0.000000 0.000000 1.000000 0.000000 0.029412 0.000000 0.000000 0.970588 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.205882 0.000000 0.794118 0.000000 1.000000 0.000000 0.000000 0.000000 0.161765 0.220588 0.147059 0.470588 0.029412 0.382353 0.000000 0.588235 0.000000 1.000000 0.000000 0.000000 0.029412 0.705882 0.073529 0.191176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRRGRTCMSSGGTTCGATYCC MEME-1 regular expression -------------------------------------------------------------------------------- [TC][CG][GTA][GT][GA][AG]G[GA][TA][CT][CAG][CG][GC]GGTTC[GA]A[TC][TC]CC -------------------------------------------------------------------------------- Time 356.64 secs. ******************************************************************************** ******************************************************************************** MOTIF CSNNSSCYYWWMCCACTVSGCCAMRNRVCC MEME-2 width = 30 sites = 59 llr = 968 E-value = 6.6e-136 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSNNSSCYYWWMCCACTVSGCCAMRNRVCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 223321111455:29::323::a3224311 pos.-specific C 532245623114a6:9:23:a8:5232368 probability G 253254122:2::21::457::::434431 matrix T 2123::155431:::1a1:::2:2121111 bits 2.4 * 2.2 * * 1.9 * * 1.7 * * * * Relative 1.4 * *** *** * Entropy 1.2 * *** **** * (23.7 bits) 1.0 * *** **** * 0.7 *** ***** ****** ** 0.5 * *** ****** ****** ** 0.2 ** ************************** 0.0 ------------------------------ Multilevel CGATGCCTTAAACCACTGGGCCACGGGGCC consensus TCGACG CCTTC A ACA T AACAAG sequence CC C CA C TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSNNSSCYYWWMCCACTVSGCCAMRNRVCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIV:602111-602545 - 34 3.25e-13 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC ATTGTTATCT chrIX:183287-183713 + 34 3.25e-13 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC AGGAATTTGT chrVII:774164-774608 - 13 7.58e-12 CCATGCTAAG GGAGCGCGCTACCGACTACGCCACACGCCC AATTAATTGA chrXI:517783-518282 - 6 7.58e-12 CCATGCTAAG GGAGCGCGCTACCGACTACGCCACACGCCC ATAGT chrXII:656810-657200 + 22 7.58e-12 CCATGCTAAG GGAGCGCGCTACCGACTACGCCACACGCCC AATTTTCTTG chrIV:1150721-1151163 + 20 4.72e-11 GAAATAGCAG GCATCGCCTTAACCACTCGGCCACTGGGAC TGAAACACTT chrX:617727-617827 - 25 5.51e-11 CACCTAAATC TGACGCCTTAAACCACTCGGCCAAACTCCC ATTGTTTGTT chrX:424276-424376 + 51 2.39e-10 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC ATCTTATTTA chrXII:962775-963358 + 10 2.39e-10 TCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC GTCGATAATA chrX:378232-378332 - 9 4.13e-10 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC TATTAATT chrXI:307980-308423 + 37 4.13e-10 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ACTTAATTGT chrV:469267-469720 - 14 4.13e-10 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC AATTATTTCT chrXIII:586447-586957 + 28 4.13e-10 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ATAGTAAGTT chrVII:823336-823694 - 17 4.13e-10 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ACTCTTATTG chrXV:853571-854869 + 60 6.14e-10 CCTTGCAAGG GAAGCGCGCTACCAACTGCGCCATGTGCCC TGATGACTGT chrIV:437564-437993 - 44 6.99e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC TTACTAATGA chrXII:167814-168225 + 27 6.99e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC ATATGACTAT chrVII:205329-205794 - 10 1.31e-09 TTCTTGAATC AGGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTG chrVII:422904-423363 - 9 1.31e-09 TTCTTGAATC AGGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATCT chrXII:628137-628643 - 43 1.31e-09 TTCTTGAATC AGGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrXIV:632444-632842 - 6 2.40e-09 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC ACTTT chrXI:74431-74833 - 42 2.40e-09 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC TAATTGCTAT chrIII:127579-127874 - 40 2.40e-09 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC ATTTTATCTT chrXI:83974-84403 - 70 3.03e-09 C TGCCGCATTAGACCACTCGGCCAACCCTCC ATACAAATTT chrXV:464079-464849 - 36 4.26e-09 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC TTGTTAACTT chrXV:300851-301309 - 67 4.26e-09 CAAA GCGAGAATCATACCACTAGACCACACGCCC GATCTTTTCT chrXII:92404-92718 - 37 4.26e-09 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC TTATTAACTT chrX:517683-517783 + 25 5.95e-09 GGGTTATGAG CCCTGCGCGCTTCCACTGCGCCACGGCGCT TAACTTTTAT chrXVI:338475-339317 + 44 5.95e-09 GGGTTATGAG CCCTGCGCGCTTCCACTGCGCCACGGCGCT GCTAAATCAT chrV:99919-100354 - 47 5.95e-09 GGGTTATGAG CCCTGCGCGCTTCCACTGCGCCACGGCGCT TAGCCAACTT chrIII:149733-150198 - 5 5.95e-09 GGGTTATGAG CCCTGCGCGCTTCCACTGCGCCACGGCGCT CAAC chrXV:281979-282402 - 24 9.15e-09 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC GCTTTCATGT chrVI:162038-162385 - 67 9.15e-09 GCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTGTTTTCTT chrVI:180675-181373 + 41 9.15e-09 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTATTTCTTG chrII:326569-327195 + 4 1.54e-08 AGG CGACGTCTTGAACCACTGGACCATTGGACC CGGAACTCGA chrV:435587-435997 + 53 1.54e-08 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TCTTATTGTT chrIX:299993-300521 + 64 1.54e-08 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TATTTCG chrVI:226328-227171 + 32 1.54e-08 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC ATTTTAATCT chrVII:1004010-1004414 - 54 3.71e-08 GCATTACAAG TGCAACGCTCTACCACTAAGCTAAGGAGGC AAACCCTTGA chrVII:661540-661919 - 70 3.71e-08 G TGCAACGCTCTACCACTAAGCTAAGGAGGC AAATTTTTAC chrX:233696-233796 - 20 4.47e-08 GGTTCGTAGC CAGACGCCGTGACCATTGGGCCACGAGGAA CAAGAATATA chrXV:340162-340577 + 23 4.47e-08 GGTTCGTAGC CAGACGCCGTGACCATTGGGCCACGAGGAA CAGATCTTGA chrXI:490781-491226 - 15 4.47e-08 GGTTCGTAGC CAGACGCCGTGACCATTGGGCCACGAGGAA CAAGAATTAT chrXIV:374622-375113 - 52 4.90e-08 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAGTCCGC TTATTTTTCT chrIV:1095175-1095677 + 56 4.90e-08 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAGTCCGC TAACATAAGA chrXIII:808069-808522 + 43 1.40e-07 GGATCAGAAC CGAAAGTGATAACCACTACACTATAGGACC TTTTTCTTCT chrV:249794-250789 - 45 1.40e-07 GGATCAAAAC CGAAAGTGATAACCACTACACTATAGGACC AGTACAACTG chrIV:802572-803021 + 27 1.40e-07 GGATCAAAAC CGAAAGTGATAACCACTACACTATAGGACC GACAATTCAT chrX:422659-422759 - 54 1.80e-07 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC ATACAAAGGA chrX:374200-374300 + 54 2.48e-07 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TACTATTTGT chrXVI:435661-436177 + 66 2.48e-07 AGATTTGCAA TCTGCTGCGCTACCACTGCGCCATACGAGC TTTTG chrXV:594225-594623 + 22 3.65e-07 GCTTGGGAAG CATAAATTCTAACCACTGAACCACTTGCGC GTTTCAATCA chrX:354028-354128 - 19 6.11e-07 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TGATAAATGA chrVI:167249-167721 - 2 6.11e-07 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG T chrXIII:837727-838193 - 18 6.11e-07 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TCAATTAACT chrVIII:120237-122668 + 59 7.56e-07 TCGTATGGCT TCATACCGTACACAACAGCACTACCGACCC ATGGAATCCA chrIV:1256878-1257286 + 18 1.30e-06 GCTTGGGAAG CATGAATTCTAACCACTGAACCACTTTCGC TAAGAAGATC chrXV:216290-216688 + 24 1.48e-06 ATCCGAGCAC CCGCGCCTTCCTCAACCCAGGCACCGCCCC CAGGTAACCG chrVIII:556612-556763 - 17 6.43e-06 TTACCCTCCA ATTACCCATATCCAACTCCACTACCATTAC CCTGCTATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSNNSSCYYWWMCCACTVSGCCAMRNRVCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:602111-602545 3.2e-13 33_[-2]_37 chrIX:183287-183713 3.2e-13 33_[+2]_37 chrVII:774164-774608 7.6e-12 12_[-2]_58 chrXI:517783-518282 7.6e-12 5_[-2]_65 chrXII:656810-657200 7.6e-12 21_[+2]_49 chrIV:1150721-1151163 4.7e-11 19_[+2]_51 chrX:617727-617827 5.5e-11 24_[-2]_46 chrX:424276-424376 2.4e-10 50_[+2]_20 chrXII:962775-963358 2.4e-10 9_[+2]_61 chrX:378232-378332 4.1e-10 8_[-2]_62 chrXI:307980-308423 4.1e-10 36_[+2]_34 chrV:469267-469720 4.1e-10 13_[-2]_57 chrXIII:586447-586957 4.1e-10 27_[+2]_43 chrVII:823336-823694 4.1e-10 16_[-2]_54 chrXV:853571-854869 6.1e-10 59_[+2]_11 chrIV:437564-437993 7e-10 43_[-2]_27 chrXII:167814-168225 7e-10 26_[+2]_44 chrVII:205329-205794 1.3e-09 9_[-2]_61 chrVII:422904-423363 1.3e-09 8_[-2]_62 chrXII:628137-628643 1.3e-09 42_[-2]_28 chrXIV:632444-632842 2.4e-09 5_[-2]_65 chrXI:74431-74833 2.4e-09 41_[-2]_29 chrIII:127579-127874 2.4e-09 39_[-2]_31 chrXI:83974-84403 3e-09 69_[-2]_1 chrXV:464079-464849 4.3e-09 35_[-2]_35 chrXV:300851-301309 4.3e-09 66_[-2]_4 chrXII:92404-92718 4.3e-09 36_[-2]_34 chrX:517683-517783 5.9e-09 24_[+2]_46 chrXVI:338475-339317 5.9e-09 43_[+2]_27 chrV:99919-100354 5.9e-09 46_[-2]_24 chrIII:149733-150198 5.9e-09 4_[-2]_66 chrXV:281979-282402 9.1e-09 23_[-2]_47 chrVI:162038-162385 9.1e-09 66_[-2]_4 chrVI:180675-181373 9.1e-09 40_[+2]_30 chrII:326569-327195 1.5e-08 3_[+2]_67 chrV:435587-435997 1.5e-08 52_[+2]_18 chrIX:299993-300521 1.5e-08 63_[+2]_7 chrVI:226328-227171 1.5e-08 31_[+2]_39 chrVII:1004010-1004414 3.7e-08 53_[-2]_17 chrVII:661540-661919 3.7e-08 69_[-2]_1 chrX:233696-233796 4.5e-08 19_[-2]_51 chrXV:340162-340577 4.5e-08 22_[+2]_48 chrXI:490781-491226 4.5e-08 14_[-2]_56 chrXIV:374622-375113 4.9e-08 51_[-2]_19 chrIV:1095175-1095677 4.9e-08 55_[+2]_15 chrXIII:808069-808522 1.4e-07 42_[+2]_28 chrV:249794-250789 1.4e-07 44_[-2]_26 chrIV:802572-803021 1.4e-07 26_[+2]_44 chrX:422659-422759 1.8e-07 53_[-2]_17 chrX:374200-374300 2.5e-07 53_[+2]_17 chrXVI:435661-436177 2.5e-07 65_[+2]_5 chrXV:594225-594623 3.6e-07 21_[+2]_49 chrX:354028-354128 6.1e-07 18_[-2]_52 chrVI:167249-167721 6.1e-07 1_[-2]_69 chrXIII:837727-838193 6.1e-07 17_[-2]_53 chrVIII:120237-122668 7.6e-07 58_[+2]_12 chrIV:1256878-1257286 1.3e-06 17_[+2]_53 chrXV:216290-216688 1.5e-06 23_[+2]_47 chrVIII:556612-556763 6.4e-06 16_[-2]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSNNSSCYYWWMCCACTVSGCCAMRNRVCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSNNSSCYYWWMCCACTVSGCCAMRNRVCC width=30 seqs=59 chrXIV:602111-602545 ( 34) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrIX:183287-183713 ( 34) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrVII:774164-774608 ( 13) GGAGCGCGCTACCGACTACGCCACACGCCC 1 chrXI:517783-518282 ( 6) GGAGCGCGCTACCGACTACGCCACACGCCC 1 chrXII:656810-657200 ( 22) GGAGCGCGCTACCGACTACGCCACACGCCC 1 chrIV:1150721-1151163 ( 20) GCATCGCCTTAACCACTCGGCCACTGGGAC 1 chrX:617727-617827 ( 25) TGACGCCTTAAACCACTCGGCCAAACTCCC 1 chrX:424276-424376 ( 51) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXII:962775-963358 ( 10) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrX:378232-378332 ( 9) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXI:307980-308423 ( 37) AGATGCCATAACCGACTAGACCACGAAACC 1 chrV:469267-469720 ( 14) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXIII:586447-586957 ( 28) AGATGCCATAACCGACTAGACCACGAAACC 1 chrVII:823336-823694 ( 17) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXV:853571-854869 ( 60) GAAGCGCGCTACCAACTGCGCCATGTGCCC 1 chrIV:437564-437993 ( 44) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXII:167814-168225 ( 27) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrVII:205329-205794 ( 10) AGGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrVII:422904-423363 ( 9) AGGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXII:628137-628643 ( 43) AGGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXIV:632444-632842 ( 6) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXI:74431-74833 ( 42) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrIII:127579-127874 ( 40) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXI:83974-84403 ( 70) TGCCGCATTAGACCACTCGGCCAACCCTCC 1 chrXV:464079-464849 ( 36) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXV:300851-301309 ( 67) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXII:92404-92718 ( 37) GCGAGAATCATACCACTAGACCACACGCCC 1 chrX:517683-517783 ( 25) CCCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrXVI:338475-339317 ( 44) CCCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrV:99919-100354 ( 47) CCCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrIII:149733-150198 ( 5) CCCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrXV:281979-282402 ( 24) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrVI:162038-162385 ( 67) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrVI:180675-181373 ( 41) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrII:326569-327195 ( 4) CGACGTCTTGAACCACTGGACCATTGGACC 1 chrV:435587-435997 ( 53) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIX:299993-300521 ( 64) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrVI:226328-227171 ( 32) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrVII:1004010-1004414 ( 54) TGCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrVII:661540-661919 ( 70) TGCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrX:233696-233796 ( 20) CAGACGCCGTGACCATTGGGCCACGAGGAA 1 chrXV:340162-340577 ( 23) CAGACGCCGTGACCATTGGGCCACGAGGAA 1 chrXI:490781-491226 ( 15) CAGACGCCGTGACCATTGGGCCACGAGGAA 1 chrXIV:374622-375113 ( 52) CTGGCGCTCTCCCAACTGAGCTAAGTCCGC 1 chrIV:1095175-1095677 ( 56) CTGGCGCTCTCCCAACTGAGCTAAGTCCGC 1 chrXIII:808069-808522 ( 43) CGAAAGTGATAACCACTACACTATAGGACC 1 chrV:249794-250789 ( 45) CGAAAGTGATAACCACTACACTATAGGACC 1 chrIV:802572-803021 ( 27) CGAAAGTGATAACCACTACACTATAGGACC 1 chrX:422659-422759 ( 54) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrX:374200-374300 ( 54) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrXVI:435661-436177 ( 66) TCTGCTGCGCTACCACTGCGCCATACGAGC 1 chrXV:594225-594623 ( 22) CATAAATTCTAACCACTGAACCACTTGCGC 1 chrX:354028-354128 ( 19) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrVI:167249-167721 ( 2) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrXIII:837727-838193 ( 18) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrVIII:120237-122668 ( 59) TCATACCGTACACAACAGCACTACCGACCC 1 chrIV:1256878-1257286 ( 18) CATGAATTCTAACCACTGAACCACTTTCGC 1 chrXV:216290-216688 ( 24) CCGCGCCTTCCTCAACCCAGGCACCGCCCC 1 chrVIII:556612-556763 ( 17) ATTACCCATATCCAACTCCACTACCATTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSNNSSCYYWWMCCACTVSGCCAMRNRVCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 8.53927 E= 6.6e-136 -102 126 -3 -60 -102 41 137 -160 13 9 41 -60 -10 9 9 -2 -102 90 137 -1253 -187 141 97 -319 -138 168 -49 -119 -160 32 -3 62 -160 41 -32 67 45 -49 -349 45 72 -149 -32 -19 67 109 -349 -187 -1253 239 -1253 -1253 -38 155 -3 -419 162 -1253 -191 -1253 -1253 221 -1253 -138 -419 -349 -1253 164 13 9 90 -160 -73 68 141 -1253 6 -1253 183 -1253 -1253 237 -349 -1253 -1253 203 -1253 -49 169 -1253 -1253 -1253 -2 151 -1253 -102 -38 9 115 -119 -38 41 83 -87 20 -17 103 -187 -10 60 90 -219 -119 155 41 -260 -260 212 -191 -219 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSNNSSCYYWWMCCACTVSGCCAMRNRVCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 59 E= 6.6e-136 0.152542 0.457627 0.186441 0.203390 0.152542 0.254237 0.491525 0.101695 0.338983 0.203390 0.254237 0.203390 0.288136 0.203390 0.203390 0.305085 0.152542 0.355932 0.491525 0.000000 0.084746 0.508475 0.372881 0.033898 0.118644 0.610169 0.135593 0.135593 0.101695 0.237288 0.186441 0.474576 0.101695 0.254237 0.152542 0.491525 0.423729 0.135593 0.016949 0.423729 0.508475 0.067797 0.152542 0.271186 0.491525 0.406780 0.016949 0.084746 0.000000 1.000000 0.000000 0.000000 0.237288 0.559322 0.186441 0.016949 0.949153 0.000000 0.050847 0.000000 0.000000 0.881356 0.000000 0.118644 0.016949 0.016949 0.000000 0.966102 0.338983 0.203390 0.355932 0.101695 0.186441 0.305085 0.508475 0.000000 0.322034 0.000000 0.677966 0.000000 0.000000 0.983051 0.016949 0.000000 0.000000 0.779661 0.000000 0.220339 1.000000 0.000000 0.000000 0.000000 0.305085 0.542373 0.000000 0.152542 0.237288 0.203390 0.423729 0.135593 0.237288 0.254237 0.338983 0.169492 0.355932 0.169492 0.389831 0.084746 0.288136 0.288136 0.355932 0.067797 0.135593 0.559322 0.254237 0.050847 0.050847 0.830508 0.050847 0.067797 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSNNSSCYYWWMCCACTVSGCCAMRNRVCC MEME-2 regular expression -------------------------------------------------------------------------------- [CT][GC][AGCT][TACG][GC][CG]C[TC][TC][AT][AT][AC]C[CA]ACT[GAC][GC][GA]C[CT]A[CA][GAC][GCA][GA][GAC][CG]C -------------------------------------------------------------------------------- Time 685.16 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTTCGAWYCYKGBHGVKDBCATTTTTTTT MEME-3 width = 30 sites = 17 llr = 384 E-value = 1.5e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTTCGAWYCYKGBHGVKDBCATTTTTTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2::::2a3:::1113:2121:6232311:1 pos.-specific C ::::a::14a6213413112a:1:1:11:: probability G 8a:::8:1:::483164442:31::::::: matrix T ::aa:::66:43:4331534:1677798a9 bits 2.4 * * * * 2.2 * * * * 1.9 * * * * 1.7 **** * * * * Relative 1.4 ******* * * * ** Entropy 1.2 ******* ** * * * ** (32.6 bits) 1.0 ******* *** * * * * ** 0.7 ******* *** * * ** ******* 0.5 ******* *** * * * ** ******* 0.2 ****************************** 0.0 ------------------------------ Multilevel GGTTCGATTCCGGTCGGTGTCATTTTTTTT consensus A A AC TT CATCGTC GAA A sequence GT A AG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGAWYCYKGBHGVKDBCATTTTTTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXII:214655-215064 - 66 1.76e-14 TCATC GGTTCGATTCCGGTTGCGTCCATTTATTTT TTACTTTTAT chrI:166164-166560 + 6 9.52e-14 TCATC GGTTCGATTCCGGTTGCGTCCAAATTTTTT TGTTAATCCA chrV:288126-288728 - 58 2.36e-13 TGCCCGCGCT GGTTCAAATCCTGCTGGTGTCGTTTTTTTT ATTGTTAGAG chrXIII:183796-183965 - 60 1.53e-12 TTGGGCCCCC GGTTCGATTCCGGGCTTGCGCATATTTTTT TTTAATTCAC chrVIII:62609-63081 + 10 1.53e-12 TGAAACCCT GGTTCGATTCTAGGAGATGGCATTTATTTT TTTGAAATTT chrII:226972-227348 + 25 6.78e-12 TGCCCGCGCA GGTTCGAGTCCTGCAGTTGTCGTTATTTTT TGGACAGTAA chrXIV:569528-570153 - 69 8.37e-12 GC GGTTCGATCCCGCTAGAGACCATTCTTTTT TTTTGCATTG chrX:197144-197244 - 65 1.26e-11 GTCTCC GGTTCGATTCCGGACTCGTCCAATTTCTTT TTGTTCTCAA chrV:207351-207523 + 20 1.54e-11 ATGAAACCCT GGTTCGATTCTAGGAGATGGCATATTTATT TTTTATATTC chrXV:274489-274979 + 68 3.91e-11 TACCTGCGCA GGTTCGAATCCTGTCTGTGACGCATTTCTT TTT chrVI:191287-191770 - 27 3.91e-11 TACCTGCGCA GGTTCGAATCCTGTCTGTGACGCATTTCTT TTTTAAATTC chrVII:700226-701242 + 51 4.27e-11 CGGAGGCGCG GGTTCAAACCCCGCGGGTATCAATATTTTT TTGAATCTAC chrXIII:372201-372660 - 57 1.16e-10 GAACGTCCCC AGTTCGATCCTGGGCGAAATCATTTTTTTA GCACTTTATC chrXVI:55868-56424 - 65 2.61e-10 GTTGCA GGTTCAATTCCTGTCCGTTTCAATTAATTT TTTTCCCCAT chrXVI:435661-436177 - 16 3.00e-10 GTTGGTCCTT AGTTCGATCCTGAGTGCGAGCTTTCTTTTT TTCCAAAGAA chrXII:975717-976195 - 69 4.19e-10 TG AGTTCAACCCTCACTGGGGTCGTTTATTTT TTTTGCATTA chrII:347416-347929 + 43 3.99e-09 TGTCCGCGCG AGTTCGAACCTCGCATCCTTCAGTAATATT TTTTTAATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGAWYCYKGBHGVKDBCATTTTTTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:214655-215064 1.8e-14 65_[-3]_5 chrI:166164-166560 9.5e-14 5_[+3]_65 chrV:288126-288728 2.4e-13 57_[-3]_13 chrXIII:183796-183965 1.5e-12 59_[-3]_11 chrVIII:62609-63081 1.5e-12 9_[+3]_61 chrII:226972-227348 6.8e-12 24_[+3]_46 chrXIV:569528-570153 8.4e-12 68_[-3]_2 chrX:197144-197244 1.3e-11 64_[-3]_6 chrV:207351-207523 1.5e-11 19_[+3]_51 chrXV:274489-274979 3.9e-11 67_[+3]_3 chrVI:191287-191770 3.9e-11 26_[-3]_44 chrVII:700226-701242 4.3e-11 50_[+3]_20 chrXIII:372201-372660 1.2e-10 56_[-3]_14 chrXVI:55868-56424 2.6e-10 64_[-3]_6 chrXVI:435661-436177 3e-10 15_[-3]_55 chrXII:975717-976195 4.2e-10 68_[-3]_2 chrII:347416-347929 4e-09 42_[+3]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGAWYCYKGBHGVKDBCATTTTTTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTTCGAWYCYKGBHGVKDBCATTTTTTTT width=30 seqs=17 chrXII:214655-215064 ( 66) GGTTCGATTCCGGTTGCGTCCATTTATTTT 1 chrI:166164-166560 ( 6) GGTTCGATTCCGGTTGCGTCCAAATTTTTT 1 chrV:288126-288728 ( 58) GGTTCAAATCCTGCTGGTGTCGTTTTTTTT 1 chrXIII:183796-183965 ( 60) GGTTCGATTCCGGGCTTGCGCATATTTTTT 1 chrVIII:62609-63081 ( 10) GGTTCGATTCTAGGAGATGGCATTTATTTT 1 chrII:226972-227348 ( 25) GGTTCGAGTCCTGCAGTTGTCGTTATTTTT 1 chrXIV:569528-570153 ( 69) GGTTCGATCCCGCTAGAGACCATTCTTTTT 1 chrX:197144-197244 ( 65) GGTTCGATTCCGGACTCGTCCAATTTCTTT 1 chrV:207351-207523 ( 20) GGTTCGATTCTAGGAGATGGCATATTTATT 1 chrXV:274489-274979 ( 68) GGTTCGAATCCTGTCTGTGACGCATTTCTT 1 chrVI:191287-191770 ( 27) GGTTCGAATCCTGTCTGTGACGCATTTCTT 1 chrVII:700226-701242 ( 51) GGTTCAAACCCCGCGGGTATCAATATTTTT 1 chrXIII:372201-372660 ( 57) AGTTCGATCCTGGGCGAAATCATTTTTTTA 1 chrXVI:55868-56424 ( 65) GGTTCAATTCCTGTCCGTTTCAATTAATTT 1 chrXVI:435661-436177 ( 16) AGTTCGATCCTGAGTGCGAGCTTTCTTTTT 1 chrXII:975717-976195 ( 69) AGTTCAACCCTCACTGGGGTCGTTTATTTT 1 chrII:347416-347929 ( 43) AGTTCGAACCTCGCATCCTTCAGTAATATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGAWYCYKGBHGVKDBCATTTTTTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.5196 E= 1.5e-040 -39 -1073 200 -1073 -1073 -1073 239 -1073 -1073 -1073 -1073 169 -1073 -1073 -1073 169 -1073 239 -1073 -1073 -39 -1073 200 -1073 169 -1073 -1073 -1073 -7 -169 -169 93 -1073 89 -1073 106 -1073 239 -1073 -1073 -1073 176 -1073 19 -139 -11 111 -7 -139 -169 211 -1073 -239 62 62 19 -7 89 -169 -7 -1073 -169 176 -7 -39 62 89 -139 -239 -169 111 61 -39 -169 111 -7 -139 30 30 41 -1073 239 -1073 -1073 106 -1073 62 -239 -39 -70 -169 93 -7 -1073 -1073 119 -81 -70 -1073 119 -7 -1073 -1073 119 -239 -169 -1073 151 -139 -70 -1073 131 -1073 -1073 -1073 169 -239 -1073 -1073 160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGAWYCYKGBHGVKDBCATTTTTTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 17 E= 1.5e-040 0.235294 0.000000 0.764706 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.235294 0.000000 0.764706 0.000000 1.000000 0.000000 0.000000 0.000000 0.294118 0.058824 0.058824 0.588235 0.000000 0.352941 0.000000 0.647059 0.000000 1.000000 0.000000 0.000000 0.000000 0.647059 0.000000 0.352941 0.117647 0.176471 0.411765 0.294118 0.117647 0.058824 0.823529 0.000000 0.058824 0.294118 0.294118 0.352941 0.294118 0.352941 0.058824 0.294118 0.000000 0.058824 0.647059 0.294118 0.235294 0.294118 0.352941 0.117647 0.058824 0.058824 0.411765 0.470588 0.235294 0.058824 0.411765 0.294118 0.117647 0.235294 0.235294 0.411765 0.000000 1.000000 0.000000 0.000000 0.647059 0.000000 0.294118 0.058824 0.235294 0.117647 0.058824 0.588235 0.294118 0.000000 0.000000 0.705882 0.176471 0.117647 0.000000 0.705882 0.294118 0.000000 0.000000 0.705882 0.058824 0.058824 0.000000 0.882353 0.117647 0.117647 0.000000 0.764706 0.000000 0.000000 0.000000 1.000000 0.058824 0.000000 0.000000 0.941176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGAWYCYKGBHGVKDBCATTTTTTTT MEME-3 regular expression -------------------------------------------------------------------------------- [GA]GTTC[GA]A[TA][TC]C[CT][GT]G[TCG][CAT][GT][GCA][TG][GTA][TCG]C[AG][TA][TA]T[TA]TTTT -------------------------------------------------------------------------------- Time 998.36 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:347416-347929 3.72e-06 42_[+3(3.99e-09)]_28 chrVIII:410958-411786 1.18e-01 100 chrXIV:721150-723208 8.10e-01 100 chrVII:310415-312947 6.83e-02 100 chrXI:490781-491226 5.57e-15 14_[-2(4.47e-08)]_8_[+1(6.27e-09)]_\ 24 chrI:166164-166560 7.91e-10 5_[+3(9.52e-14)]_65 chrIV:1352329-1353418 6.13e-01 100 chrXVI:821557-824278 5.22e-02 100 chrXIII:609306-609786 6.99e-01 100 chrVII:561284-561703 7.74e-01 100 chrVII:479183-483014 5.90e-01 100 chrXI:613218-613595 3.43e-01 100 chrIV:599507-600328 4.09e-01 100 chrIII:149733-150198 1.02e-11 4_[-2(5.95e-09)]_7_[+1(1.16e-07)]_\ 35 chrXVI:431750-434405 7.98e-02 100 chrIV:976177-976773 4.30e-01 100 chrXII:97090-97870 7.39e-01 100 chrIX:336117-336638 1.16e-10 13_[-3(3.82e-08)]_20_[+2(1.30e-05)]_\ 7 chrXIV:493736-495061 8.49e-01 100 chrIV:913939-916238 1.01e-01 100 chrXII:521815-523734 8.33e-01 100 chrIX:325737-326127 5.21e-01 100 chrII:266194-266684 1.69e-10 26_[+1(4.29e-09)]_50 chrXII:86871-87246 4.43e-01 100 chrXVI:172863-174111 8.42e-01 100 chrVII:515967-518968 6.75e-02 100 chrXV:710121-710635 3.90e-01 100 chrXII:261536-264141 9.97e-01 100 chrVII:959335-959567 5.79e-02 100 chrXV:853571-854869 2.91e-18 27_[-1(4.92e-10)]_8_[+2(6.14e-10)]_\ 11 chrXIII:161953-162654 4.36e-02 [+1(3.96e-05)]_76 chrV:176915-177449 4.12e-10 3_[+1(3.76e-11)]_73 chrXVI:640711-641751 5.94e-01 100 chrII:563213-564515 3.36e-01 100 chrIV:667572-668208 7.98e-01 100 chrXV:663276-664084 9.65e-01 100 chrIV:835759-836234 2.59e-01 100 chrXIII:754452-756219 9.09e-01 100 chrVII:227225-228384 9.59e-01 100 chrXII:809285-811893 6.28e-02 49_[+1(5.42e-05)]_27 chrVIII:450944-453065 5.52e-01 100 chrXI:46716-46994 9.50e-01 100 chrVII:401344-401608 9.34e-01 100 chrX:73405-73505 2.97e-02 100 chrXII:932108-932471 7.87e-01 100 chrXIII:267691-269190 1.13e-01 100 chrXIV:107130-107491 1.95e-01 100 chrXIV:585298-586530 2.23e-01 100 chrII:255005-257089 8.77e-01 100 chrXVI:794495-795975 7.98e-01 100 chrXIII:116425-119925 6.26e-01 100 chrIX:68259-68477 4.19e-01 100 chrXV:594225-594623 1.18e-03 21_[+2(3.65e-07)]_49 chrXIII:253136-253711 3.11e-01 100 chrVII:1057040-1059388 7.93e-01 100 chrXII:167814-168225 4.47e-06 26_[+2(6.99e-10)]_44 chrX:542749-542849 9.65e-01 100 chrVII:122006-122753 7.42e-01 100 chrXVI:302479-304342 1.26e-02 17_[+2(3.27e-05)]_53 chrVI:220225-222050 2.65e-01 100 chrXI:578555-579268 6.78e-01 100 chrXII:897693-899723 4.12e-01 100 chrXII:242156-243545 2.24e-01 100 chrXI:302736-303213 1.27e-05 64_[+1(5.20e-09)]_12 chrV:305820-307476 1.31e-01 100 chrIV:946143-946603 8.07e-08 42_[+1(4.72e-09)]_34 chrVII:345579-346965 1.54e-01 100 chrXIII:362939-363547 8.43e-01 100 chrXIV:65251-65659 5.63e-02 43_[+1(5.57e-05)]_33 chrIII:28551-31168 8.63e-01 100 chrXII:656810-657200 1.14e-07 21_[+2(7.58e-12)]_49 chrVIII:114554-116397 9.98e-01 100 chrXI:364099-365251 8.32e-01 100 chrIII:107158-107794 8.87e-01 100 chrXII:1017698-1019386 7.38e-01 100 chrIII:137263-139376 9.63e-02 100 chrV:361968-363263 2.88e-01 100 chrXII:568018-571210 8.69e-01 100 chrIV:1078799-1080870 9.77e-01 100 chrXII:366046-366887 1.44e-02 100 chrVII:363748-364438 9.23e-01 100 chrXVI:559939-560300 8.89e-01 100 chrVI:180675-181373 6.14e-12 10_[-1(5.90e-11)]_6_[+2(9.15e-09)]_\ 30 chrXIV:575080-577610 7.91e-01 100 chrVII:914835-915317 9.67e-01 100 chrII:167540-169634 1.92e-01 100 chrII:45536-46712 5.50e-01 100 chrXII:953997-954364 8.65e-01 100 chrXV:925202-925413 6.11e-01 100 chrVIII:175011-175376 5.49e-01 100 chrII:444726-445053 8.20e-03 100 chrIII:168078-168519 2.29e-10 63_[-1(3.85e-10)]_13 chrXV:1027806-1029081 4.90e-01 100 chrIV:234204-234668 1.47e-01 100 chrXV:161049-161859 1.44e-01 100 chrVII:794231-795124 4.03e-01 100 chrXVI:297044-297369 2.29e-01 100 chrXII:673473-674684 5.32e-01 100 chrXVI:819285-819937 6.07e-16 19_[+3(4.90e-12)]_51 chrII:592272-593498 5.95e-01 100 chrVI:63988-65323 6.91e-01 100 chrIII:161991-163939 2.53e-01 100 chrXVI:645129-646282 9.47e-01 100 chrXIII:67281-68054 5.95e-01 100 chrXII:449271-450498 7.07e-01 100 chrIII:179-1021 8.99e-01 100 chrVIII:148974-149325 9.96e-01 100 chrXVI:880120-880747 9.92e-01 100 chrXIII:91785-92108 1.00e+00 100 chrXV:92729-94788 7.56e-01 100 chrII:332328-333072 6.03e-01 100 chrIX:127410-128916 4.41e-01 100 chrIV:468840-469194 3.78e-01 100 chrIII:127579-127874 2.29e-06 39_[-2(2.40e-09)]_31 chrV:60911-62150 3.66e-01 100 chrXVI:927818-928245 7.17e-01 100 chrXV:504863-505480 6.67e-01 100 chrXII:975717-976195 1.28e-06 68_[-3(4.19e-10)]_2 chrIX:84213-85455 3.65e-02 49_[+1(2.48e-05)]_27 chrXV:408421-408656 7.22e-02 100 chrVII:823336-823694 3.75e-17 16_[-2(4.13e-10)]_9_[+1(1.71e-09)]_\ 21 chrI:182264-183124 5.54e-01 100 chrVIII:401052-401334 7.95e-01 100 chrIV:555402-556654 6.83e-02 100 chrV:431003-431489 5.81e-02 100 chrVII:648037-648478 8.22e-01 100 chrXV:1003887-1006095 2.28e-01 100 chrXIII:760455-761199 4.78e-02 100 chrXV:877173-878119 1.58e-01 100 chrII:392522-394685 2.57e-01 100 chrVII:736200-736710 9.15e-01 100 chrX:617727-617827 1.49e-07 24_[-2(5.51e-11)]_46 chrXII:713145-713515 4.23e-01 100 chrXII:416472-417057 3.60e-01 100 chrIV:539382-539589 3.61e-01 100 chrXIII:625832-626999 5.66e-01 100 chrXIV:413501-414873 2.24e-01 100 chrIV:1243116-1243300 8.88e-01 100 chrVII:661540-661919 5.36e-05 69_[-2(3.71e-08)]_1 chrXII:88197-88425 3.70e-01 100 chrII:45018-45344 4.01e-01 100 chrV:288126-288728 2.17e-09 57_[-3(2.36e-13)]_13 chrXII:125105-125328 1.69e-01 100 chrXV:671083-671592 8.15e-01 100 chrIV:1017004-1017477 5.01e-11 27_[-1(3.76e-11)]_49 chrIV:892882-893353 4.58e-01 100 chrI:222931-223090 8.65e-01 100 chrXI:74431-74833 4.63e-06 41_[-2(2.40e-09)]_29 chrXI:313247-314034 2.53e-01 100 chrVIII:120237-122668 3.92e-03 58_[+2(7.56e-07)]_12 chrXIII:886609-889031 2.85e-02 100 chrVIII:62609-63081 3.36e-08 9_[+3(1.53e-12)]_61 chrXIII:499004-501059 5.05e-01 100 chrIV:519650-521180 9.92e-01 100 chrII:544475-544848 1.31e-01 100 chrIV:1269883-1271165 4.13e-01 100 chrVII:726392-726746 7.90e-01 100 chrX:290866-290966 1.80e-01 100 chrIV:321577-321969 7.10e-01 100 chrXII:605134-605603 4.28e-01 100 chrVIII:145758-146462 8.93e-01 100 chrXIII:290537-291113 1.64e-07 62_[+1(3.76e-11)]_14 chrVI:136685-137697 5.51e-01 100 chrVII:384691-384946 1.47e-01 100 chrIV:568721-569255 6.43e-06 25_[-2(1.30e-05)]_7_[+1(1.67e-07)]_\ 14 chrIV:308023-310223 9.69e-01 100 chrXII:1028185-1028610 9.29e-01 100 chrVIII:296762-297194 6.95e-02 100 chrX:745037-745137 7.97e-01 100 chrXV:109539-110688 8.79e-01 100 chrX:414754-414854 6.15e-01 100 chrXV:159268-160748 5.05e-01 100 chrXI:617612-618431 3.63e-01 100 chrXIV:102568-103201 3.38e-01 100 chrVIII:237463-238131 8.91e-02 10_[+2(5.24e-05)]_60 chrXIV:506921-507563 2.55e-01 100 chrX:569951-570051 2.60e-01 100 chrXIV:415121-416193 4.85e-01 100 chrX:531616-531716 3.24e-14 20_[+3(5.09e-11)]_50 chrIX:138471-139120 3.73e-01 100 chrXII:948961-953821 4.68e-01 100 chrXVI:830124-830580 5.61e-01 100 chrV:441814-442654 4.96e-01 100 chrVIII:375463-375766 6.80e-02 100 chrI:180944-181449 1.35e-01 100 chrIV:1301538-1302599 2.39e-01 100 chrIV:359133-359796 5.62e-01 100 chrIV:579050-580753 6.23e-01 100 chrIX:386189-387132 3.23e-01 100 chrXII:710531-711445 9.69e-01 100 chrXII:628137-628643 1.60e-05 42_[-2(1.31e-09)]_28 chrVII:1004010-1004414 1.01e-05 53_[-2(3.71e-08)]_17 chrXII:855352-856282 5.85e-01 100 chrXII:201652-202760 1.09e-01 100 chrXVI:135193-135873 9.62e-01 100 chrVIII:133964-135229 1.87e-01 100 chrI:81939-82268 7.90e-01 100 chrIX:248584-249384 7.57e-01 100 chrVIII:382232-383540 5.63e-01 100 chrX:525859-525959 5.34e-01 100 chrXIV:738317-741914 3.19e-02 100 chrXIII:837727-838193 2.77e-09 17_[-2(6.11e-07)]_24_[+1(4.72e-09)]_\ 5 chrXIII:159246-160195 6.70e-01 100 chrII:159827-160014 1.07e-01 100 chrVII:610395-611495 3.04e-01 100 chrXII:198261-199712 5.75e-02 100 chrV:550868-551692 2.00e-16 46_[-3(1.53e-12)]_24 chrX:422659-422759 3.97e-04 53_[-2(1.80e-07)]_17 chrVII:533253-535196 7.99e-01 100 chrII:181347-181595 8.99e-01 100 chrIV:218340-218777 3.47e-01 100 chrXII:939552-941170 4.07e-01 100 chrXVI:435661-436177 3.57e-12 15_[-3(3.00e-10)]_20_[+2(2.48e-07)]_\ 5 chrIV:538916-539242 6.10e-01 100 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chrXI:463434-463822 4.03e-01 100 chrVII:766125-766401 2.35e-01 100 chrXIV:715245-717166 4.11e-01 100 chrXV:977210-979172 7.61e-01 100 chrV:491051-491487 8.43e-02 21_[-1(9.00e-05)]_55 chrX:354028-354128 2.77e-09 18_[-2(6.11e-07)]_24_[+1(4.72e-09)]_\ 4 chrXVI:811033-811328 8.69e-01 100 chrIX:316154-317630 9.26e-01 100 chrIV:928558-929085 1.01e-01 100 chrXIV:215492-217115 9.61e-01 100 chrVII:185505-185793 5.40e-01 100 chrVII:316460-317665 6.54e-02 100 chrXII:875213-875667 2.14e-09 46_[+1(3.40e-10)]_30 chrVII:411657-412565 9.97e-01 100 chrXIII:195927-196298 1.04e-07 16_[-1(5.54e-10)]_60 chrXVI:828862-829355 8.64e-01 100 chrV:298739-299831 2.44e-01 100 chrVII:973112-973977 7.86e-01 100 chrXV:446682-447306 3.08e-02 100 chrXII:214655-215064 3.24e-10 65_[-3(1.76e-14)]_5 chrXIII:463342-463899 2.44e-08 33_[+3(3.82e-08)]_37 chrVII:440239-441131 5.65e-01 100 chrV:438491-439011 1.30e-13 50_[+3(2.05e-11)]_20 chrVII:857074-857594 6.81e-01 100 chrIV:1256878-1257286 6.83e-03 17_[+2(1.30e-06)]_53 chrVIII:20942-21308 1.30e-01 100 chrVII:930885-931607 4.67e-01 100 chrXIV:241203-241770 4.99e-01 100 chrXV:216290-216688 4.08e-03 23_[+2(1.48e-06)]_47 chrVII:328379-329262 8.79e-01 100 chrIV:930505-930929 6.91e-01 100 chrXVI:404532-408276 2.94e-01 100 chrII:326569-327195 7.85e-06 3_[+2(1.54e-08)]_67 chrVI:30170-30546 2.55e-01 100 chrIX:68661-69590 9.92e-01 100 chrXI:163354-164756 8.41e-02 4_[-2(5.87e-05)]_66 chrIV:129283-130952 5.63e-01 100 chrX:90017-90117 9.90e-02 100 chrX:424276-424376 5.68e-07 50_[+2(2.39e-10)]_20 chrXV:464079-464849 1.00e-06 35_[-2(4.26e-09)]_35 chrII:477050-477764 3.18e-01 100 chrXIII:378775-379586 3.28e-01 100 chrXI:83974-84403 8.63e-06 69_[-2(3.03e-09)]_1 chrVII:828466-828985 1.58e-10 58_[-1(9.90e-10)]_18 chrXIII:808069-808522 3.26e-09 11_[-1(5.20e-09)]_7_[+2(1.40e-07)]_\ 28 chrXIV:569528-570153 3.80e-08 68_[-3(8.37e-12)]_2 chrXIV:619747-620036 9.38e-01 100 chrX:378232-378332 1.72e-17 8_[-2(4.13e-10)]_9_[+1(1.71e-09)]_\ 29 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************