Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.106985 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.068734 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.090363 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.03222 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.078756 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/background Finished invoke: name: bg status: 0 time: 0.027859 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 1179.695403 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/seqs-shuffled Finished invoke: name: dreme status: 0 time: 36.336793 Invoking: centrimo -seqlen 466 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.147495 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.262647 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/background -primary VSSGGRDTCGAACCSSSGAYCYYMN /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.55359 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/background -primary TRGYYYAGTGGKTWRARSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.528049 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/background -primary TNHWTTTTTTTYTTYTTTTYT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.503803 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/background -primary TCTTCB /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.531996 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/background -primary CAACTTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.304711 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/background -primary CGHTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.28249 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/background -primary ACRATGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.328798 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/background --motif VSSGGRDTCGAACCSSSGAYCYYMN /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa Finished invoke: name: fimo1 status: 0 time: 0.379456 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/background --motif TRGYYYAGTGGKTWRARSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa Finished invoke: name: fimo2 status: 0 time: 0.353617 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/background --motif TNHWTTTTTTTYTTYTTTTYT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa Finished invoke: name: fimo3 status: 0 time: 0.388672 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/background --motif TCTTCB /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa Finished invoke: name: fimo4 status: 0 time: 0.264712 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/background --motif CAACTTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa Finished invoke: name: fimo5 status: 0 time: 0.270864 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/background --motif CGHTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa Finished invoke: name: fimo6 status: 0 time: 0.268907 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/background --motif ACRATGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/AWRI1631--CUP9.fa Finished invoke: name: fimo7 status: 0 time: 0.261785 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CUP9/summary.tsv Finished invoke: name: summary status: 0 time: 0.217745 Done