******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CIN5/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71774-74126 1.0000 100 chrI:81871-82399 1.0000 100 chrI:138900-139346 1.0000 100 chrI:141522-141939 1.0000 100 chrI:166178-166780 1.0000 100 chrI:180961-181434 1.0000 100 chrI:182158-183189 1.0000 100 chrII:9355-9955 1.0000 100 chrII:36245-36561 1.0000 100 chrII:44947-45360 1.0000 100 chrII:59837-61268 1.0000 100 chrII:87950-88579 1.0000 100 chrII:88949-90169 1.0000 100 chrII:135984-136244 1.0000 100 chrII:165078-165609 1.0000 100 chrII:167841-168225 1.0000 100 chrII:181291-181694 1.0000 100 chrII:197164-197810 1.0000 100 chrII:226993-227326 1.0000 100 chrII:255124-255730 1.0000 100 chrII:266209-266660 1.0000 100 chrII:326389-327189 1.0000 100 chrII:332141-333087 1.0000 100 chrII:342491-342891 1.0000 100 chrII:347403-347908 1.0000 100 chrII:350574-351040 1.0000 100 chrII:391059-391895 1.0000 100 chrII:405593-406159 1.0000 100 chrII:415515-416067 1.0000 100 chrII:444736-445543 1.0000 100 chrII:477039-477739 1.0000 100 chrII:544002-544812 1.0000 100 chrII:592884-593562 1.0000 100 chrII:603942-607123 1.0000 100 chrII:642858-643244 1.0000 100 chrII:644971-645408 1.0000 100 chrII:680369-682393 1.0000 100 chrIII:101-1021 1.0000 100 chrIII:13973-16938 1.0000 100 chrIII:82458-82693 1.0000 100 chrIII:90879-91061 1.0000 100 chrIII:123332-123783 1.0000 100 chrIII:127590-127869 1.0000 100 chrIII:142429-142989 1.0000 100 chrIII:149398-150193 1.0000 100 chrIII:151147-151616 1.0000 100 chrIII:163473-163868 1.0000 100 chrIII:168068-168512 1.0000 100 chrIII:177170-178787 1.0000 100 chrIII:227784-228189 1.0000 100 chrIII:295317-296005 1.0000 100 chrIV:83442-83798 1.0000 100 chrIV:117163-117949 1.0000 100 chrIV:130068-130987 1.0000 100 chrIV:159050-159968 1.0000 100 chrIV:216664-218074 1.0000 100 chrIV:220955-222368 1.0000 100 chrIV:229443-229824 1.0000 100 chrIV:230002-230985 1.0000 100 chrIV:308022-309407 1.0000 100 chrIV:321651-321969 1.0000 100 chrIV:341253-341659 1.0000 100 chrIV:357976-358443 1.0000 100 chrIV:359189-359740 1.0000 100 chrIV:386217-386896 1.0000 100 chrIV:410027-410779 1.0000 100 chrIV:410995-411667 1.0000 100 chrIV:434113-435134 1.0000 100 chrIV:437555-438607 1.0000 100 chrIV:465271-465513 1.0000 100 chrIV:488499-489106 1.0000 100 chrIV:490545-491259 1.0000 100 chrIV:509059-509477 1.0000 100 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chrXV:1027910-1029435 1.0000 100 chrXV:1053899-1054670 1.0000 100 chrXVI:16626-16782 1.0000 100 chrXVI:17020-17517 1.0000 100 chrXVI:55883-56417 1.0000 100 chrXVI:75010-75240 1.0000 100 chrXVI:75592-76802 1.0000 100 chrXVI:135027-135838 1.0000 100 chrXVI:172871-174111 1.0000 100 chrXVI:188546-189279 1.0000 100 chrXVI:210061-210541 1.0000 100 chrXVI:239184-239529 1.0000 100 chrXVI:279958-280236 1.0000 100 chrXVI:281572-281926 1.0000 100 chrXVI:302625-304625 1.0000 100 chrXVI:338618-339342 1.0000 100 chrXVI:340522-340782 1.0000 100 chrXVI:378651-378991 1.0000 100 chrXVI:406203-407748 1.0000 100 chrXVI:432291-434527 1.0000 100 chrXVI:435693-436267 1.0000 100 chrXVI:520024-520523 1.0000 100 chrXVI:559909-560270 1.0000 100 chrXVI:571980-572515 1.0000 100 chrXVI:581853-582170 1.0000 100 chrXVI:588470-588866 1.0000 100 chrXVI:622233-622827 1.0000 100 chrXVI:641996-643384 1.0000 100 chrXVI:678931-679402 1.0000 100 chrXVI:689392-689828 1.0000 100 chrXVI:699889-700637 1.0000 100 chrXVI:718379-719374 1.0000 100 chrXVI:731637-732294 1.0000 100 chrXVI:744096-744574 1.0000 100 chrXVI:769011-769463 1.0000 100 chrXVI:775700-776179 1.0000 100 chrXVI:794450-794848 1.0000 100 chrXVI:810589-810833 1.0000 100 chrXVI:819344-819850 1.0000 100 chrXVI:856745-857111 1.0000 100 chrXVI:860131-860660 1.0000 100 chrXVI:880205-880564 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CIN5/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CIN5/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CIN5/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 559 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 55900 N= 559 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.305 C 0.195 G 0.195 T 0.305 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CIN5/background): A 0.311 C 0.189 G 0.189 T 0.311 ******************************************************************************** ******************************************************************************** MOTIF SSGGRWTCGAACCSGSGAYCY MEME-1 width = 21 sites = 88 llr = 1465 E-value = 7.4e-277 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSGGRWTCGAACCSGSGAYCY MEME-1 Description -------------------------------------------------------------------------------- Simplified A :13:65:::aa::12116::: pos.-specific C 64:::1:8:::a7433:1663 probability G 347a42::a::::45491131 matrix T 1::::2a2::::31:2:2315 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * **** * Relative 1.4 * ****** * Entropy 1.2 * ******* * (24.0 bits) 1.0 * *** ******* * 0.7 ***** ******* * * ** 0.5 ***** *********** *** 0.2 ***** *************** 0.0 --------------------- Multilevel CGGGAATCGAACCCGGGACCT consensus GCA GT T TGCC TTGC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRWTCGAACCSGSGAYCY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIII:123332-123783 + 79 1.26e-12 TGGGGCGAGC CGGGACTCGAACCCGGGACCT C chrXVI:860131-860660 - 75 1.55e-11 CAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrX:531582-532165 - 46 1.55e-11 CTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrVI:180728-181249 + 45 1.55e-11 CTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrIV:992701-993001 - 72 1.55e-11 GCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrIV:83442-83798 - 19 1.55e-11 TTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrIII:142429-142989 + 51 1.55e-11 ATGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrXVI:856745-857111 - 67 6.39e-11 ATGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrXIII:321068-321319 + 13 6.39e-11 ATGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrX:197256-197431 + 29 6.39e-11 TTGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrVII:774137-774636 - 56 6.39e-11 TTGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrIV:1075323-1075725 + 7 6.39e-11 TCCAAC CGAGGATCGAACTCGGGACCT TTGCCGTGTG chrIV:410027-410779 - 69 6.39e-11 TTGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrXV:853650-854827 + 8 1.11e-10 GACGCAA CCGGAATCGAACCGATGACCT CTTCCTTGCA chrV:311753-312279 + 66 1.11e-10 TTGGACGCAA CCGGAATCGAACCGATGACCT CTTCCTTGCA chrXIII:420317-420869 + 54 2.57e-10 ATGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXI:307973-308429 + 2 2.57e-10 C CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrX:378267-378529 - 56 2.57e-10 TTGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrVII:823354-823676 - 61 2.57e-10 ATGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrV:469247-469723 - 66 2.57e-10 ATGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrV:438471-438974 - 72 2.57e-10 GATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXII:448524-448841 + 27 3.02e-10 AAGGTCCTAC CCGGATTCGAACCGGGGTTGT CCGGATCAAA chrV:249707-250922 - 64 3.02e-10 AAGGTCCTAC CCGGATTCGAACCGGGGTTGT CCGGATCAAA chrV:130817-131363 + 51 3.02e-10 TAGGTCTTAC CCGGATTCGAACCGGGGTTGT TCGGATCAAA chrIV:644928-645360 + 68 3.02e-10 AAGGTCCTAC CCGGATTCGAACCGGGGTTGT CCGGATCAAA chrIII:168068-168512 + 70 3.02e-10 AAGGTCCTAC CCGGATTCGAACCGGGGTTGT CCGGATCAAA chrXIV:96061-96521 + 9 3.54e-10 GAGCGGTA CGAGAATCGAACCCGTGTCCC CACCTTGGAA chrVII:779405-779927 - 42 3.54e-10 TTGAGCGGTA CGAGAATCGAACCCGTGTCCC CACCTTGGAA chrXVI:819344-819850 - 26 4.13e-10 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrXIV:569683-570167 + 1 4.13e-10 . GCGGGATCGAACCGCTGATCC CCGCGTTATT chrXII:1051989-1052193 + 39 4.13e-10 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrVII:738895-739490 - 24 4.13e-10 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrV:443012-443372 + 69 4.13e-10 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrIX:183293-183701 + 2 4.13e-10 A GCGGGATCGAACCGCTGATCC CCGCGTTATT chrIV:488499-489106 + 54 8.63e-10 CTGATCCAAC CGAGGTTCGAACTCGGGATCT TCGCCGTGTA chrII:326389-327189 + 62 8.63e-10 TTGATCCAAC CGAGGTTCGAACTCGGGATCT TCGCCGTGTA chrXIII:807904-808547 + 80 2.21e-09 AAGGTCCCAC CCGGATTCGAACTGGGGTTGT chrXIII:290467-291165 - 77 2.21e-09 TAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrVII:541724-542114 - 23 2.21e-09 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrVII:328359-328976 - 8 2.21e-09 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTG chrV:487093-487588 + 50 2.21e-09 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrIV:1016933-1017517 + 41 2.21e-09 ACTCCGAAGC GGGGAGTCGAACCCCGGTCTC CACGGTGAGA chrII:644971-645408 - 70 2.21e-09 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrXIII:480428-480795 + 69 3.23e-09 AAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrVI:226420-226934 + 70 3.23e-09 AAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrXVI:769011-769463 + 29 1.01e-08 ACTCCTCATA GGGGGCTCGAACCCCTGACAT TTCGGTATCC chrXV:438402-438985 - 66 1.01e-08 ACTCCTCATA GGGGGCTCGAACCCCTGACAT TTCGGTATCC chrVII:115342-115725 - 71 1.01e-08 CTCCTCATA GGGGGCTCGAACCCCTGACAT TTCGGTATCC chrXIII:195956-196286 + 6 1.25e-08 CGAGC TGGGAATTGAACCCAGGGCCT CTCGCATGCT chrVIII:466806-467329 - 15 1.71e-08 ATGCCACCTG CCAGAATTGAACTAGCGACCT TTGCATTACA chrXV:976285-976724 - 10 3.06e-08 TTGCTCCAGG GGAGGTTCGAACTCTCGACCT TCAGATTAT chrX:422654-423352 - 27 3.06e-08 GTGCTCCAGG GGAGGTTCGAACTCTCGACCT TCAGATTATG chrX:390801-391323 + 40 3.06e-08 ATGCTCCAGG GGAGGTTCGAACTCTCGACCT TCAGATTATG chrIV:884279-884625 - 62 3.36e-08 GTGCTCGAGG TGGGGTTTGAACCCACGACGG TCGCGTTGCT chrXVI:55883-56417 + 78 4.82e-08 TTGAAACGGA CAGGAATTGAACCTGCAACCC TT chrXI:302719-303230 - 70 4.82e-08 ATGAAACGGA CAGGAATTGAACCTGCAACCC TTCGATTGCA chrXI:162268-162742 + 41 4.82e-08 ACACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrX:415724-416234 + 11 4.82e-08 TTGAAACGGA CAGGAATTGAACCTGCAACCC TTCGATTGCA chrX:355183-355740 - 5 4.82e-08 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTG chrIV:568358-569507 - 42 4.82e-08 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrII:266209-266660 - 37 4.82e-08 ATGCTTCCAA TCGGATTTGAACCGATGATCT CCACATTACT chrXIII:259047-259369 + 9 1.03e-07 GACAACTG CAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrIV:980766-981168 + 66 1.03e-07 ACGACAACTG CAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrII:226993-227326 - 18 1.03e-07 ACGACAACTG CAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrXII:426832-427581 - 18 1.20e-07 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrX:204550-205002 - 51 1.20e-07 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrV:492203-492544 + 38 1.20e-07 CCTTCCCCGC CAGGACTTGAACCTGGAATCT TCTGGTTCGT chrIX:336139-336623 + 27 1.20e-07 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrIV:619711-620233 + 56 1.20e-07 TCTTCCCCGC CAGGACTTGAACCTGGAATCT TCTGGTTCGT chrIV:519662-519904 - 64 1.40e-07 TTGAAGGATG CGAGGTTCGAACTCGCGCGGA CAACCGTCCA chrII:347403-347908 - 52 1.40e-07 CTGAAGGATG CGAGGTTCGAACTCGCGCGGA CAACCGTCCA chrII:9355-9955 - 32 1.40e-07 CTGAAGGATG CGAGGTTCGAACTCGCGCGGA CAACCGTCCA chrXVI:810589-810833 - 59 1.51e-07 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrXIV:632453-632796 - 69 1.51e-07 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrXII:975806-976172 + 53 1.51e-07 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrVII:730970-731416 - 38 1.51e-07 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrXIII:837718-838342 - 7 2.03e-07 ATCTCCCGGG GGCGAGTCGAACGCCCGATCT CAAGAT chrIV:946166-946569 - 54 2.03e-07 ATCTCCCGGG GGCGAGTCGAACGCCCGATCT CAAGATTTCG chrXVI:744096-744574 - 41 2.52e-07 TTGCCACCTG TCAGAATTGAACTAACGACCT TTGCATTACA chrII:642858-643244 + 15 2.70e-07 AAGCTCGCAC TCAGGATCGAACTAAGGACCA ACAGATTTGC chrXVI:689392-689828 - 57 3.31e-07 ACGACACCAG CAGGATTTGAACCAGCGCGGG CAGAGCCCAA chrV:288140-288785 + 40 3.31e-07 ACGACACCAG CAGGATTTGAACCAGCGCGGG CAGAGCCCAA chrIII:227784-228189 - 77 3.31e-07 CAG CAGGATTTGAACCAGCGCGGG CAGAGCCCAA chrXIII:362948-363286 - 39 3.78e-07 ATGCCATCTC CTAGAATCGAACCAGGGTTTC ATCGGCCACA chrV:434408-434756 + 18 3.78e-07 ATGCCATCTC CTAGAATCGAACCAGGGTTTC ATCGGCCACA chrXII:784101-784757 - 45 5.55e-07 GCGTCACAGA CAGGATTCGAACCTGCGCAGG TAAAACCCAA chrXVI:622233-622827 + 69 7.95e-07 ATGCGAATTC TGTGGATCGAACACAGGACCT CCAGATAACT chrXIV:631515-632133 - 76 1.11e-06 GGTC CCGGGTTCGAGTCCCGGCTCG CCCCCATTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRWTCGAACCSGSGAYCY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123332-123783 1.3e-12 78_[+1]_1 chrXVI:860131-860660 1.5e-11 74_[-1]_5 chrX:531582-532165 1.5e-11 45_[-1]_34 chrVI:180728-181249 1.5e-11 44_[+1]_35 chrIV:992701-993001 1.5e-11 71_[-1]_8 chrIV:83442-83798 1.5e-11 18_[-1]_61 chrIII:142429-142989 1.5e-11 50_[+1]_29 chrXVI:856745-857111 6.4e-11 66_[-1]_13 chrXIII:321068-321319 6.4e-11 12_[+1]_67 chrX:197256-197431 6.4e-11 28_[+1]_51 chrVII:774137-774636 6.4e-11 55_[-1]_24 chrIV:1075323-1075725 6.4e-11 6_[+1]_73 chrIV:410027-410779 6.4e-11 68_[-1]_11 chrXV:853650-854827 1.1e-10 7_[+1]_72 chrV:311753-312279 1.1e-10 65_[+1]_14 chrXIII:420317-420869 2.6e-10 53_[+1]_26 chrXI:307973-308429 2.6e-10 1_[+1]_78 chrX:378267-378529 2.6e-10 55_[-1]_24 chrVII:823354-823676 2.6e-10 60_[-1]_19 chrV:469247-469723 2.6e-10 65_[-1]_14 chrV:438471-438974 2.6e-10 71_[-1]_8 chrXII:448524-448841 3e-10 26_[+1]_53 chrV:249707-250922 3e-10 63_[-1]_16 chrV:130817-131363 3e-10 50_[+1]_29 chrIV:644928-645360 3e-10 67_[+1]_12 chrIII:168068-168512 3e-10 69_[+1]_10 chrXIV:96061-96521 3.5e-10 8_[+1]_71 chrVII:779405-779927 3.5e-10 41_[-1]_38 chrXVI:819344-819850 4.1e-10 25_[-1]_54 chrXIV:569683-570167 4.1e-10 [+1]_79 chrXII:1051989-1052193 4.1e-10 38_[+1]_41 chrVII:738895-739490 4.1e-10 23_[-1]_56 chrV:443012-443372 4.1e-10 68_[+1]_11 chrIX:183293-183701 4.1e-10 1_[+1]_78 chrIV:488499-489106 8.6e-10 53_[+1]_26 chrII:326389-327189 8.6e-10 61_[+1]_18 chrXIII:807904-808547 2.2e-09 79_[+1] chrXIII:290467-291165 2.2e-09 76_[-1]_3 chrVII:541724-542114 2.2e-09 22_[-1]_57 chrVII:328359-328976 2.2e-09 7_[-1]_72 chrV:487093-487588 2.2e-09 49_[+1]_30 chrIV:1016933-1017517 2.2e-09 40_[+1]_39 chrII:644971-645408 2.2e-09 69_[-1]_10 chrXIII:480428-480795 3.2e-09 68_[+1]_11 chrVI:226420-226934 3.2e-09 69_[+1]_10 chrXVI:769011-769463 1e-08 28_[+1]_51 chrXV:438402-438985 1e-08 65_[-1]_14 chrVII:115342-115725 1e-08 70_[-1]_9 chrXIII:195956-196286 1.3e-08 5_[+1]_74 chrVIII:466806-467329 1.7e-08 14_[-1]_65 chrXV:976285-976724 3.1e-08 9_[-1]_70 chrX:422654-423352 3.1e-08 26_[-1]_53 chrX:390801-391323 3.1e-08 39_[+1]_40 chrIV:884279-884625 3.4e-08 61_[-1]_18 chrXVI:55883-56417 4.8e-08 77_[+1]_2 chrXI:302719-303230 4.8e-08 69_[-1]_10 chrXI:162268-162742 4.8e-08 40_[+1]_39 chrX:415724-416234 4.8e-08 10_[+1]_69 chrX:355183-355740 4.8e-08 4_[-1]_75 chrIV:568358-569507 4.8e-08 41_[-1]_38 chrII:266209-266660 4.8e-08 36_[-1]_43 chrXIII:259047-259369 1e-07 8_[+1]_71 chrIV:980766-981168 1e-07 65_[+1]_14 chrII:226993-227326 1e-07 17_[-1]_62 chrXII:426832-427581 1.2e-07 17_[-1]_62 chrX:204550-205002 1.2e-07 50_[-1]_29 chrV:492203-492544 1.2e-07 37_[+1]_42 chrIX:336139-336623 1.2e-07 26_[+1]_53 chrIV:619711-620233 1.2e-07 55_[+1]_24 chrIV:519662-519904 1.4e-07 63_[-1]_16 chrII:347403-347908 1.4e-07 51_[-1]_28 chrII:9355-9955 1.4e-07 31_[-1]_48 chrXVI:810589-810833 1.5e-07 58_[-1]_21 chrXIV:632453-632796 1.5e-07 68_[-1]_11 chrXII:975806-976172 1.5e-07 52_[+1]_27 chrVII:730970-731416 1.5e-07 37_[-1]_42 chrXIII:837718-838342 2e-07 6_[-1]_73 chrIV:946166-946569 2e-07 53_[-1]_26 chrXVI:744096-744574 2.5e-07 40_[-1]_39 chrII:642858-643244 2.7e-07 14_[+1]_65 chrXVI:689392-689828 3.3e-07 56_[-1]_23 chrV:288140-288785 3.3e-07 39_[+1]_40 chrIII:227784-228189 3.3e-07 76_[-1]_3 chrXIII:362948-363286 3.8e-07 38_[-1]_41 chrV:434408-434756 3.8e-07 17_[+1]_62 chrXII:784101-784757 5.5e-07 44_[-1]_35 chrXVI:622233-622827 7.9e-07 68_[+1]_11 chrXIV:631515-632133 1.1e-06 75_[-1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRWTCGAACCSGSGAYCY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSGGRWTCGAACCSGSGAYCY width=21 seqs=88 chrIII:123332-123783 ( 79) CGGGACTCGAACCCGGGACCT 1 chrXVI:860131-860660 ( 75) CCGGAATCGAACCGGGGGCCC 1 chrX:531582-532165 ( 46) CCGGAATCGAACCGGGGGCCC 1 chrVI:180728-181249 ( 45) CCGGAATCGAACCGGGGGCCC 1 chrIV:992701-993001 ( 72) CCGGAATCGAACCGGGGGCCC 1 chrIV:83442-83798 ( 19) CCGGAATCGAACCGGGGGCCC 1 chrIII:142429-142989 ( 51) CCGGAATCGAACCGGGGGCCC 1 chrXVI:856745-857111 ( 67) CCGGAATCGAACCGGAGACCT 1 chrXIII:321068-321319 ( 13) CCGGAATCGAACCGGAGACCT 1 chrX:197256-197431 ( 29) CCGGAATCGAACCGGAGACCT 1 chrVII:774137-774636 ( 56) CCGGAATCGAACCGGAGACCT 1 chrIV:1075323-1075725 ( 7) CGAGGATCGAACTCGGGACCT 1 chrIV:410027-410779 ( 69) CCGGAATCGAACCGGAGACCT 1 chrXV:853650-854827 ( 8) CCGGAATCGAACCGATGACCT 1 chrV:311753-312279 ( 66) CCGGAATCGAACCGATGACCT 1 chrXIII:420317-420869 ( 54) CCAGGATCGAACTGGGGACGT 1 chrXI:307973-308429 ( 2) CCAGGATCGAACTGGGGACGT 1 chrX:378267-378529 ( 56) CCAGGATCGAACTGGGGACGT 1 chrVII:823354-823676 ( 61) CCAGGATCGAACTGGGGACGT 1 chrV:469247-469723 ( 66) CCAGGATCGAACTGGGGACGT 1 chrV:438471-438974 ( 72) CCAGGATCGAACTGGGGACGT 1 chrXII:448524-448841 ( 27) CCGGATTCGAACCGGGGTTGT 1 chrV:249707-250922 ( 64) CCGGATTCGAACCGGGGTTGT 1 chrV:130817-131363 ( 51) CCGGATTCGAACCGGGGTTGT 1 chrIV:644928-645360 ( 68) CCGGATTCGAACCGGGGTTGT 1 chrIII:168068-168512 ( 70) CCGGATTCGAACCGGGGTTGT 1 chrXIV:96061-96521 ( 9) CGAGAATCGAACCCGTGTCCC 1 chrVII:779405-779927 ( 42) CGAGAATCGAACCCGTGTCCC 1 chrXVI:819344-819850 ( 26) GCGGGATCGAACCGCTGATCC 1 chrXIV:569683-570167 ( 1) GCGGGATCGAACCGCTGATCC 1 chrXII:1051989-1052193 ( 39) GCGGGATCGAACCGCTGATCC 1 chrVII:738895-739490 ( 24) GCGGGATCGAACCGCTGATCC 1 chrV:443012-443372 ( 69) GCGGGATCGAACCGCTGATCC 1 chrIX:183293-183701 ( 2) GCGGGATCGAACCGCTGATCC 1 chrIV:488499-489106 ( 54) CGAGGTTCGAACTCGGGATCT 1 chrII:326389-327189 ( 62) CGAGGTTCGAACTCGGGATCT 1 chrXIII:807904-808547 ( 80) CCGGATTCGAACTGGGGTTGT 1 chrXIII:290467-291165 ( 77) GGGGAGTCGAACCCCGGTCTC 1 chrVII:541724-542114 ( 23) GGGGAGTCGAACCCCGGTCTC 1 chrVII:328359-328976 ( 8) GGGGAGTCGAACCCCGGTCTC 1 chrV:487093-487588 ( 50) GGGGAGTCGAACCCCGGTCTC 1 chrIV:1016933-1017517 ( 41) GGGGAGTCGAACCCCGGTCTC 1 chrII:644971-645408 ( 70) GGGGAGTCGAACCCCGGTCTC 1 chrXIII:480428-480795 ( 69) GGGGGCTCGAACCCCTAACCT 1 chrVI:226420-226934 ( 70) GGGGGCTCGAACCCCTAACCT 1 chrXVI:769011-769463 ( 29) GGGGGCTCGAACCCCTGACAT 1 chrXV:438402-438985 ( 66) GGGGGCTCGAACCCCTGACAT 1 chrVII:115342-115725 ( 71) GGGGGCTCGAACCCCTGACAT 1 chrXIII:195956-196286 ( 6) TGGGAATTGAACCCAGGGCCT 1 chrVIII:466806-467329 ( 15) CCAGAATTGAACTAGCGACCT 1 chrXV:976285-976724 ( 10) GGAGGTTCGAACTCTCGACCT 1 chrX:422654-423352 ( 27) GGAGGTTCGAACTCTCGACCT 1 chrX:390801-391323 ( 40) GGAGGTTCGAACTCTCGACCT 1 chrIV:884279-884625 ( 62) TGGGGTTTGAACCCACGACGG 1 chrXVI:55883-56417 ( 78) CAGGAATTGAACCTGCAACCC 1 chrXI:302719-303230 ( 70) CAGGAATTGAACCTGCAACCC 1 chrXI:162268-162742 ( 41) TGGGGGTCGAACCCATAATCT 1 chrX:415724-416234 ( 11) CAGGAATTGAACCTGCAACCC 1 chrX:355183-355740 ( 5) TGGGGGTCGAACCCATAATCT 1 chrIV:568358-569507 ( 42) TGGGGGTCGAACCCATAATCT 1 chrII:266209-266660 ( 37) TCGGATTTGAACCGATGATCT 1 chrXIII:259047-259369 ( 9) CAGGACTCGAACCTGCGCGGG 1 chrIV:980766-981168 ( 66) CAGGACTCGAACCTGCGCGGG 1 chrII:226993-227326 ( 18) CAGGACTCGAACCTGCGCGGG 1 chrXII:426832-427581 ( 18) GGGGAATTGAACCCCGATCTG 1 chrX:204550-205002 ( 51) GGGGAATTGAACCCCGATCTG 1 chrV:492203-492544 ( 38) CAGGACTTGAACCTGGAATCT 1 chrIX:336139-336623 ( 27) GGGGAATTGAACCCCGATCTG 1 chrIV:619711-620233 ( 56) CAGGACTTGAACCTGGAATCT 1 chrIV:519662-519904 ( 64) CGAGGTTCGAACTCGCGCGGA 1 chrII:347403-347908 ( 52) CGAGGTTCGAACTCGCGCGGA 1 chrII:9355-9955 ( 32) CGAGGTTCGAACTCGCGCGGA 1 chrXVI:810589-810833 ( 59) TGAGGGTTGAACTCACGATCT 1 chrXIV:632453-632796 ( 69) TGAGGGTTGAACTCACGATCT 1 chrXII:975806-976172 ( 53) TGAGGGTTGAACTCACGATCT 1 chrVII:730970-731416 ( 38) TGAGGGTTGAACTCACGATCT 1 chrXIII:837718-838342 ( 7) GGCGAGTCGAACGCCCGATCT 1 chrIV:946166-946569 ( 54) GGCGAGTCGAACGCCCGATCT 1 chrXVI:744096-744574 ( 41) TCAGAATTGAACTAACGACCT 1 chrII:642858-643244 ( 15) TCAGGATCGAACTAAGGACCA 1 chrXVI:689392-689828 ( 57) CAGGATTTGAACCAGCGCGGG 1 chrV:288140-288785 ( 40) CAGGATTTGAACCAGCGCGGG 1 chrIII:227784-228189 ( 77) CAGGATTTGAACCAGCGCGGG 1 chrXIII:362948-363286 ( 39) CTAGAATCGAACCAGGGTTTC 1 chrV:434408-434756 ( 18) CTAGAATCGAACCAGGGTTTC 1 chrXII:784101-784757 ( 45) CAGGATTCGAACCTGCGCAGG 1 chrXVI:622233-622827 ( 69) TGTGGATCGAACACAGGACCT 1 chrXIV:631515-632133 ( 76) CCGGGTTCGAGTCCCGGCTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRWTCGAACCSGSGAYCY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 44720 bayes= 8.53787 E= 7.4e-277 -1310 159 59 -107 -119 111 119 -377 -7 -306 182 -477 -1310 -1310 240 -1310 90 -1310 115 -1310 58 -60 -15 -38 -1310 -1310 -1310 169 -1310 203 -1310 -45 -1310 -1310 240 -1310 169 -1310 -1310 -1310 167 -1310 -406 -1310 -1310 238 -1310 -477 -477 190 -306 -25 -177 123 94 -160 -87 47 150 -319 -245 59 123 -53 -107 -1310 217 -1310 90 -60 -125 -53 -477 156 -89 8 -319 161 47 -131 -277 59 -47 78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRWTCGAACCSGSGAYCY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 88 E= 7.4e-277 0.000000 0.568182 0.284091 0.147727 0.136364 0.409091 0.431818 0.022727 0.295455 0.022727 0.670455 0.011364 0.000000 0.000000 1.000000 0.000000 0.579545 0.000000 0.420455 0.000000 0.465909 0.125000 0.170455 0.238636 0.000000 0.000000 0.000000 1.000000 0.000000 0.772727 0.000000 0.227273 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.988636 0.000000 0.011364 0.000000 0.000000 0.988636 0.000000 0.011364 0.011364 0.704545 0.022727 0.261364 0.090909 0.443182 0.363636 0.102273 0.170455 0.261364 0.534091 0.034091 0.056818 0.284091 0.443182 0.215909 0.147727 0.000000 0.852273 0.000000 0.579545 0.125000 0.079545 0.215909 0.011364 0.556818 0.102273 0.329545 0.034091 0.579545 0.261364 0.125000 0.045455 0.284091 0.136364 0.534091 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRWTCGAACCSGSGAYCY MEME-1 regular expression -------------------------------------------------------------------------------- [CG][GC][GA]G[AG][AT]T[CT]GAAC[CT][CG][GC][GCT]G[AT][CT][CG][TC] -------------------------------------------------------------------------------- Time 302.73 secs. ******************************************************************************** ******************************************************************************** MOTIF GSBYNBKTGGCSYAGTKGKTWRAGSSHHC MEME-2 width = 29 sites = 71 llr = 1253 E-value = 2.8e-221 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBYNBKTGGCSYAGTKGKTWRAGSSHHC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::1212:3:::1a1::::26552::322 pos.-specific C 133523::::753:::2::1:12154435 probability G 9531325:7a:32:9:5a51:32745112 matrix T 1143333a::324::a3:47411111241 bits 2.4 * * 2.2 * * 1.9 * * * 1.7 * * * *** * Relative 1.4 * **** *** * Entropy 1.2 * **** *** * (25.5 bits) 1.0 * **** *** ** ** 0.7 ** ***** *** ** * *** 0.5 ** * ****** ******** *** * 0.2 **** ********************** * 0.0 ----------------------------- Multilevel GGTCGCGTGGCCTAGTGGGTAAAGCGCTC consensus CGTTTT A TGC T T TGC GCAC sequence C C C G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNBKTGGCSYAGTKGKTWRAGSSHHC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXVI:856745-857111 + 24 1.15e-14 AACAAGATTC GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrXIII:321068-321319 - 48 1.15e-14 AATACAAATC GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrXII:656855-657197 - 2 1.15e-14 CAAGAAAATT GGGCGTGTGGCGTAGTCGGTAGCGCGCTC C chrX:197256-197431 - 64 1.15e-14 TAATATTA GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrVII:774137-774636 + 13 1.15e-14 TCAATTAATT GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrIV:410027-410779 + 26 1.15e-14 TACAAATATT GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrXVI:880205-880564 - 7 6.75e-13 ACAATATAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTA chrXIV:602117-602526 + 41 6.75e-13 AGATAACAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXIV:569683-570167 - 37 6.75e-13 AGATAACAGT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrIX:183293-183701 - 38 6.75e-13 ACAAATTCCT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrII:197164-197810 + 57 6.75e-13 CAGTAATCAA GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXV:853650-854827 - 43 1.80e-11 ACAGTCATCA GGGCACATGGCGCAGTTGGTAGCGCGCTT CCCTTGCAAG chrXV:274491-274856 + 50 5.36e-11 AAGTAATCGT GTCCCAGTGGCCGAGTGGTTAAGGCGATG CCCTGCTATT chrIV:1150721-1151171 - 17 5.36e-11 AAGTGTTTCA GTCCCAGTGGCCGAGTGGTTAAGGCGATG CCTGCTATTT chrX:617711-618134 + 47 8.33e-11 AACAAACAAT GGGAGTTTGGCCGAGTGGTTTAAGGCGTC AGATTTAGGT chrXV:353915-354287 - 34 1.27e-10 ACGGTTTACT GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrXIV:104611-105021 + 39 1.27e-10 CAAGTTCTCA GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrXVI:689392-689828 + 5 1.46e-10 TTTG GGCACTATGGCCGAGTGGTTAAGGCGACA GACTTGAAAT chrXI:307973-308429 - 38 1.93e-10 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrX:378267-378529 + 12 1.93e-10 TAAATTAATA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrVII:823354-823676 + 17 1.93e-10 CAATAAGAGT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrVII:412163-412589 - 13 1.93e-10 TCAAAAAACT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrV:469247-469723 + 22 1.93e-10 AGAAATAATT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrV:438471-438974 + 28 1.93e-10 CAACAAATTA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXIII:259047-259369 - 53 2.52e-10 AAGTTAGTAT GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrXII:167785-168249 - 30 2.52e-10 ATAGTCATAT GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrX:523823-524355 - 26 2.52e-10 AGAGATTAAA GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrIII:227784-228189 + 6 4.80e-10 GAAAT GGCACTATGGCCGAGTGGTTAAGGCGAGA GACTCGAATG chrXII:605150-605615 - 72 5.44e-10 . GCTCGTGTAGCTCAGTGGTTAGAGCTTCG TGCTTATAGC chrXIV:374640-375084 + 57 5.75e-09 AGAAAAATAA GCGGACTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrV:435675-436009 - 4 7.76e-09 AACAATAAGA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GAC chrIX:300059-300521 - 32 7.76e-09 CAACGAAATA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrIV:1201557-1201944 + 50 7.76e-09 CAAATAAATA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrXVI:810589-810833 + 15 8.55e-09 CATTATTTGC GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrXIV:632453-632796 + 25 8.55e-09 AATTTAAAGT GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrIII:127590-127869 + 37 8.55e-09 AAGATAAAAT GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrXII:875225-875583 + 22 9.43e-09 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTC GGCTTTTAAG chrVIII:358307-358788 - 44 9.43e-09 CAAATAGTAA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrVIII:237777-238136 - 5 9.43e-09 CAAATAGTAA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACT chrVII:422879-423306 + 50 9.43e-09 ACAGATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrVII:115342-115725 + 5 9.43e-09 CTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTC GGCTTTTAAG chrII:36245-36561 + 45 9.43e-09 TCAGTTGTAA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrX:424306-424717 - 26 1.04e-08 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrIV:519662-519904 + 10 1.04e-08 TGATTTTAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrXVI:860131-860660 + 34 1.14e-08 TAAATAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXVI:571980-572515 + 72 1.14e-08 ACAATACTTC GCGCAAGTGGTTTAGTGGTAAAATCCAAC chrXV:226475-226914 - 9 1.14e-08 AAGAAATTCA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCAT chrX:531582-532165 + 5 1.14e-08 GTGA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrIV:992701-993001 + 31 1.14e-08 ACAATTGTGA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXV:300923-301294 + 39 1.25e-08 AGAAAAGATC GGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrXIII:195956-196286 - 71 1.25e-08 A GGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrXII:448524-448841 - 61 4.30e-08 AAGAAGTTCC GGTCCTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrV:249707-250922 + 22 4.30e-08 CAGTTGTACT GGTCCTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrIV:802606-803026 - 8 4.30e-08 ATGAATTGTC GGTCCTATAGTGTAGTGGTTATCACTTTC GGTTTTG chrXV:110867-111190 - 27 4.67e-08 CAATTAACCC GGGCGGTTAGTGTAGTGGTTATCATCCCA CCCTTCCAAG chrXIV:96061-96521 - 43 4.67e-08 TCCAACACAT GGGCGGTTAGTGTAGTGGTTATCATCCCA CCCTTCCAAG chrXI:84006-84430 + 40 6.43e-08 AAATTTGTAT GGAGGGTTGGCCGAGTGGTCTAATGCGGC AGACTTAAGA chrIV:1175585-1176041 + 66 7.51e-08 ACAAAACAAA GCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTCTCA chrII:350574-351040 + 70 1.02e-07 TCAATAAAAG GGTTTTATAGTGTAGTGGTTATCACTTTC GG chrXI:490753-491189 + 47 1.46e-07 ATAATTCTTG TTCCTCGTGGCCCAATGGTCACGGCGTCT GGCTACGAAC chrX:374300-374885 - 7 1.46e-07 ACAAATAGTA GCTCGCGTGGCGTAATGGCAACGCGTCTG ACTTCT chrX:233051-234797 + 65 1.46e-07 TATATTCTTG TTCCTCGTGGCCCAATGGTCACGGCGTCT GGCTACG chrVII:828452-829158 - 11 1.46e-07 ACAAACAGTA GCTCGCGTGGCGTAATGGCAACGCGTCTG ACTTCTAATC chrII:405593-406159 + 52 1.46e-07 ACAAATAGTA GCTCGCGTGGCGTAATGGCAACGCGTCTG ACTTCTAATC chrX:542826-543268 - 19 1.68e-07 CAATTAAATA CTCTCGGTAGCCAAGTTGGTTTAAGGCGC AAGACTGTAA chrX:354005-354466 + 59 1.68e-07 TCATTTATCA CTCTCGGTAGCCAAGTTGGTTTAAGGCGC AAGACTGTAA chrVI:210489-210893 - 38 1.68e-07 ACAAAAACGA CTCTCGGTAGCCAAGTTGGTTTAAGGCGC AAGACTGTAA chrVI:167004-167841 + 65 1.68e-07 ACAAAAACGA CTCTCGGTAGCCAAGTTGGTTTAAGGCGC AAGACTG chrXVI:435693-436267 - 6 4.46e-07 TACAACAAAA GCTCGTATGGCGCAGTGGTAGCGCAGCAG ATTGC chrII:642858-643244 - 49 4.46e-07 GTAATAGAAA GCTCGTATGGCGCAGTGGTAGCGCAGCAG ATTGCAAATC chrIV:1256885-1257287 - 15 7.11e-07 GATCTTCTTA GCGAAAGTGGTTCAGTGGTTAGAATTCAT GCTTCCCAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNBKTGGCSYAGTKGKTWRAGSSHHC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:856745-857111 1.1e-14 23_[+2]_48 chrXIII:321068-321319 1.1e-14 47_[-2]_24 chrXII:656855-657197 1.1e-14 1_[-2]_70 chrX:197256-197431 1.1e-14 63_[-2]_8 chrVII:774137-774636 1.1e-14 12_[+2]_59 chrIV:410027-410779 1.1e-14 25_[+2]_46 chrXVI:880205-880564 6.8e-13 6_[-2]_65 chrXIV:602117-602526 6.8e-13 40_[+2]_31 chrXIV:569683-570167 6.8e-13 36_[-2]_35 chrIX:183293-183701 6.8e-13 37_[-2]_34 chrII:197164-197810 6.8e-13 56_[+2]_15 chrXV:853650-854827 1.8e-11 42_[-2]_29 chrXV:274491-274856 5.4e-11 49_[+2]_22 chrIV:1150721-1151171 5.4e-11 16_[-2]_55 chrX:617711-618134 8.3e-11 46_[+2]_25 chrXV:353915-354287 1.3e-10 33_[-2]_38 chrXIV:104611-105021 1.3e-10 38_[+2]_33 chrXVI:689392-689828 1.5e-10 4_[+2]_67 chrXI:307973-308429 1.9e-10 37_[-2]_34 chrX:378267-378529 1.9e-10 11_[+2]_60 chrVII:823354-823676 1.9e-10 16_[+2]_55 chrVII:412163-412589 1.9e-10 12_[-2]_59 chrV:469247-469723 1.9e-10 21_[+2]_50 chrV:438471-438974 1.9e-10 27_[+2]_44 chrXIII:259047-259369 2.5e-10 52_[-2]_19 chrXII:167785-168249 2.5e-10 29_[-2]_42 chrX:523823-524355 2.5e-10 25_[-2]_46 chrIII:227784-228189 4.8e-10 5_[+2]_66 chrXII:605150-605615 5.4e-10 71_[-2] chrXIV:374640-375084 5.7e-09 56_[+2]_15 chrV:435675-436009 7.8e-09 3_[-2]_68 chrIX:300059-300521 7.8e-09 31_[-2]_40 chrIV:1201557-1201944 7.8e-09 49_[+2]_22 chrXVI:810589-810833 8.6e-09 14_[+2]_57 chrXIV:632453-632796 8.6e-09 24_[+2]_47 chrIII:127590-127869 8.6e-09 36_[+2]_35 chrXII:875225-875583 9.4e-09 21_[+2]_50 chrVIII:358307-358788 9.4e-09 43_[-2]_28 chrVIII:237777-238136 9.4e-09 4_[-2]_67 chrVII:422879-423306 9.4e-09 49_[+2]_22 chrVII:115342-115725 9.4e-09 4_[+2]_67 chrII:36245-36561 9.4e-09 44_[+2]_27 chrX:424306-424717 1e-08 25_[-2]_46 chrIV:519662-519904 1e-08 9_[+2]_62 chrXVI:860131-860660 1.1e-08 33_[+2]_38 chrXVI:571980-572515 1.1e-08 71_[+2] chrXV:226475-226914 1.1e-08 8_[-2]_63 chrX:531582-532165 1.1e-08 4_[+2]_67 chrIV:992701-993001 1.1e-08 30_[+2]_41 chrXV:300923-301294 1.3e-08 38_[+2]_33 chrXIII:195956-196286 1.3e-08 70_[-2]_1 chrXII:448524-448841 4.3e-08 60_[-2]_11 chrV:249707-250922 4.3e-08 21_[+2]_50 chrIV:802606-803026 4.3e-08 7_[-2]_64 chrXV:110867-111190 4.7e-08 26_[-2]_45 chrXIV:96061-96521 4.7e-08 42_[-2]_29 chrXI:84006-84430 6.4e-08 39_[+2]_32 chrIV:1175585-1176041 7.5e-08 65_[+2]_6 chrII:350574-351040 1e-07 69_[+2]_2 chrXI:490753-491189 1.5e-07 46_[+2]_25 chrX:374300-374885 1.5e-07 6_[-2]_65 chrX:233051-234797 1.5e-07 64_[+2]_7 chrVII:828452-829158 1.5e-07 10_[-2]_61 chrII:405593-406159 1.5e-07 51_[+2]_20 chrX:542826-543268 1.7e-07 18_[-2]_53 chrX:354005-354466 1.7e-07 58_[+2]_13 chrVI:210489-210893 1.7e-07 37_[-2]_34 chrVI:167004-167841 1.7e-07 64_[+2]_7 chrXVI:435693-436267 4.5e-07 5_[-2]_66 chrII:642858-643244 4.5e-07 48_[-2]_23 chrIV:1256885-1257287 7.1e-07 14_[-2]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNBKTGGCSYAGTKGKTWRAGSSHHC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBYNBKTGGCSYAGTKGKTWRAGSSHHC width=29 seqs=71 chrXVI:856745-857111 ( 24) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrXIII:321068-321319 ( 48) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrXII:656855-657197 ( 2) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrX:197256-197431 ( 64) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrVII:774137-774636 ( 13) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrIV:410027-410779 ( 26) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrXVI:880205-880564 ( 7) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXIV:602117-602526 ( 41) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXIV:569683-570167 ( 37) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrIX:183293-183701 ( 38) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrII:197164-197810 ( 57) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXV:853650-854827 ( 43) GGGCACATGGCGCAGTTGGTAGCGCGCTT 1 chrXV:274491-274856 ( 50) GTCCCAGTGGCCGAGTGGTTAAGGCGATG 1 chrIV:1150721-1151171 ( 17) GTCCCAGTGGCCGAGTGGTTAAGGCGATG 1 chrX:617711-618134 ( 47) GGGAGTTTGGCCGAGTGGTTTAAGGCGTC 1 chrXV:353915-354287 ( 34) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrXIV:104611-105021 ( 39) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrXVI:689392-689828 ( 5) GGCACTATGGCCGAGTGGTTAAGGCGACA 1 chrXI:307973-308429 ( 38) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrX:378267-378529 ( 12) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrVII:823354-823676 ( 17) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrVII:412163-412589 ( 13) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrV:469247-469723 ( 22) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrV:438471-438974 ( 28) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXIII:259047-259369 ( 53) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrXII:167785-168249 ( 30) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrX:523823-524355 ( 26) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrIII:227784-228189 ( 6) GGCACTATGGCCGAGTGGTTAAGGCGAGA 1 chrXII:605150-605615 ( 72) GCTCGTGTAGCTCAGTGGTTAGAGCTTCG 1 chrXIV:374640-375084 ( 57) GCGGACTTAGCTCAGTTGGGAGAGCGCCA 1 chrV:435675-436009 ( 4) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrIX:300059-300521 ( 32) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrIV:1201557-1201944 ( 50) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrXVI:810589-810833 ( 15) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXIV:632453-632796 ( 25) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrIII:127590-127869 ( 37) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXII:875225-875583 ( 22) TCCTTGTTAGCTCAGTTGGTAGAGCGTTC 1 chrVIII:358307-358788 ( 44) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrVIII:237777-238136 ( 5) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrVII:422879-423306 ( 50) GGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrVII:115342-115725 ( 5) TCCTTGTTAGCTCAGTTGGTAGAGCGTTC 1 chrII:36245-36561 ( 45) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrX:424306-424717 ( 26) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrIV:519662-519904 ( 10) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrXVI:860131-860660 ( 34) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXVI:571980-572515 ( 72) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXV:226475-226914 ( 9) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrX:531582-532165 ( 5) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrIV:992701-993001 ( 31) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXV:300923-301294 ( 39) GGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrXIII:195956-196286 ( 71) GGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrXII:448524-448841 ( 61) GGTCCTATAGTGTAGTGGTTATCACTTTC 1 chrV:249707-250922 ( 22) GGTCCTATAGTGTAGTGGTTATCACTTTC 1 chrIV:802606-803026 ( 8) GGTCCTATAGTGTAGTGGTTATCACTTTC 1 chrXV:110867-111190 ( 27) GGGCGGTTAGTGTAGTGGTTATCATCCCA 1 chrXIV:96061-96521 ( 43) GGGCGGTTAGTGTAGTGGTTATCATCCCA 1 chrXI:84006-84430 ( 40) GGAGGGTTGGCCGAGTGGTCTAATGCGGC 1 chrIV:1175585-1176041 ( 66) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrII:350574-351040 ( 70) GGTTTTATAGTGTAGTGGTTATCACTTTC 1 chrXI:490753-491189 ( 47) TTCCTCGTGGCCCAATGGTCACGGCGTCT 1 chrX:374300-374885 ( 7) GCTCGCGTGGCGTAATGGCAACGCGTCTG 1 chrX:233051-234797 ( 65) TTCCTCGTGGCCCAATGGTCACGGCGTCT 1 chrVII:828452-829158 ( 11) GCTCGCGTGGCGTAATGGCAACGCGTCTG 1 chrII:405593-406159 ( 52) GCTCGCGTGGCGTAATGGCAACGCGTCTG 1 chrX:542826-543268 ( 19) CTCTCGGTAGCCAAGTTGGTTTAAGGCGC 1 chrX:354005-354466 ( 59) CTCTCGGTAGCCAAGTTGGTTTAAGGCGC 1 chrVI:210489-210893 ( 38) CTCTCGGTAGCCAAGTTGGTTTAAGGCGC 1 chrVI:167004-167841 ( 65) CTCTCGGTAGCCAAGTTGGTTTAAGGCGC 1 chrXVI:435693-436267 ( 6) GCTCGTATGGCGCAGTGGTAGCGCAGCAG 1 chrII:642858-643244 ( 49) GCTCGTATGGCGCAGTGGTAGCGCAGCAG 1 chrIV:1256885-1257287 ( 15) GCGAAAGTGGTTCAGTGGTTAGAATTCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNBKTGGCSYAGTKGKTWRAGSSHHC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 40248 bayes= 9.98051 E= 2.8e-221 -1279 -175 223 -246 -288 84 142 -146 -288 64 71 18 -166 134 -94 6 -66 34 64 -22 -129 84 6 12 -66 -1279 130 12 -1279 -1279 -1279 169 -29 -1279 198 -1279 -1279 -1279 240 -1279 -1279 192 -1279 -14 -1279 142 64 -66 -129 71 -16 34 169 -1279 -1279 -1279 -146 -1279 223 -1279 -1279 -375 -1279 167 -446 16 134 -7 -1279 -1279 240 -1279 -1279 -216 146 49 -76 -116 -175 112 100 -1279 -275 18 58 -94 64 -114 58 25 25 -188 -100 -143 181 -146 -346 150 95 -214 -1279 106 134 -129 6 90 -75 -56 -66 64 -75 34 -66 146 -5 -166 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNBKTGGCSYAGTKGKTWRAGSSHHC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 71 E= 2.8e-221 0.000000 0.056338 0.887324 0.056338 0.042254 0.338028 0.507042 0.112676 0.042254 0.295775 0.309859 0.352113 0.098592 0.478873 0.098592 0.323944 0.197183 0.239437 0.295775 0.267606 0.126761 0.338028 0.197183 0.338028 0.197183 0.000000 0.464789 0.338028 0.000000 0.000000 0.000000 1.000000 0.253521 0.000000 0.746479 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.718310 0.000000 0.281690 0.000000 0.507042 0.295775 0.197183 0.126761 0.309859 0.169014 0.394366 1.000000 0.000000 0.000000 0.000000 0.112676 0.000000 0.887324 0.000000 0.000000 0.014085 0.000000 0.985915 0.014085 0.211268 0.478873 0.295775 0.000000 0.000000 1.000000 0.000000 0.000000 0.042254 0.521127 0.436620 0.183099 0.084507 0.056338 0.676056 0.619718 0.000000 0.028169 0.352113 0.464789 0.098592 0.295775 0.140845 0.464789 0.225352 0.225352 0.084507 0.154930 0.070423 0.661972 0.112676 0.028169 0.535211 0.366197 0.070423 0.000000 0.394366 0.478873 0.126761 0.323944 0.352113 0.112676 0.211268 0.197183 0.295775 0.112676 0.394366 0.197183 0.521127 0.183099 0.098592 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNBKTGGCSYAGTKGKTWRAGSSHHC MEME-2 regular expression -------------------------------------------------------------------------------- G[GC][TGC][CT][GTC][CT][GT]T[GA]G[CT][CG][TC]AGT[GTC]G[GT]T[AT][AG][ACG]G[CG][GC][CAT][TC]C -------------------------------------------------------------------------------- Time 576.67 secs. ******************************************************************************** ******************************************************************************** MOTIF WRCAYCCRTACAYH MEME-3 width = 14 sites = 50 llr = 596 E-value = 3.3e-041 ******************************************************************************** -------------------------------------------------------------------------------- Motif WRCAYCCRTACAYH MEME-3 Description -------------------------------------------------------------------------------- Simplified A 551a:::418:a:2 pos.-specific C 1:9:5a9:1:a:45 probability G :3:::::512:::: matrix T 41::5:1:7:::63 bits 2.4 * 2.2 * * 1.9 * ** * 1.7 * ** * Relative 1.4 ** ** ** Entropy 1.2 ** ** *** (17.2 bits) 1.0 ****** **** 0.7 ****** **** 0.5 ************* 0.2 ************** 0.0 -------------- Multilevel AACACCCGTACATC consensus TG T A G CT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAYCCRTACAYH MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------- chrXV:639135-639475 - 62 8.63e-09 TGACTACTTT TACACCCGTACACC ACACATACAG chrIV:229443-229824 + 70 2.82e-08 TCTTACACAA AACATCCGTACATC AGAAGGATTA chrXII:932090-932527 - 9 6.53e-08 TATACATCCG TACATCCGTACATC TGTACATC chrXV:79763-80145 - 44 8.73e-08 ACTCCATGTA AACACCCGTACATA TTAAATAAGT chrVII:149117-149518 - 51 1.05e-07 CTGTGCTTAC AGCATCCATACACC CACCCATACA chrXVI:378651-378991 - 69 1.83e-07 ATTCAGAGAA AACATCCGTACATT CGAGTTCTCA chrXII:522146-522458 + 50 2.22e-07 TTATTAACTA AACATCCGTACACA AAAGGTTTTC chrX:703251-703735 - 8 2.22e-07 GACGCGTGGA AGCACCCATGCATC CACTATT chrII:181291-181694 + 52 2.22e-07 CCCTTTACAA AGCACCCATACATT ACATTGAATA chrI:81871-82399 - 25 2.54e-07 AAACTGTTGG TACATCCGTGCACC TCCGCTAGAT chrXVI:794450-794848 + 55 3.02e-07 AACATCTCCA AACACCCATACATA TTTATATTAT chrII:44947-45360 + 66 3.02e-07 GAGACAATCA TGCATCCGTACATT CTATGTATGT chrXII:241613-242010 + 45 3.76e-07 TTTCCCTTTT TACATCCGTACATA TAAAATGTAA chrXVI:279958-280236 + 66 4.23e-07 AGGAGAAGTC CGCATCCGTGCACC TCACAATTCC chrIV:1355726-1356010 - 45 4.82e-07 AGCTCCCTGT AACATCCATACATT CGGTTAAAAT chrIV:1062768-1063094 - 76 4.82e-07 GAAAATAAAT AGCACCCACACATC GCATGATGGC chrXIII:549848-553293 - 8 5.27e-07 CTGTACATTA CGCACCCATACATT TATAGTT chrVII:483411-483755 - 15 5.27e-07 CATTGCTGGG ATCACCCATACATC ACTCTGTTTT chrIV:1300914-1301322 + 40 5.27e-07 TTTTCCTTCA AACATCCGTGCACT GTGGATGTTT chrXII:713150-713585 - 55 6.04e-07 TGCAGACTAT CACATCCGTACATA TGTATAAAAA chrVI:95426-95887 - 30 6.04e-07 CAATCAGTCA TGCACCCACACACC GGATTGCGTA chrV:53524-53966 - 40 6.04e-07 TACCCTGTTT AACATCCGAACACC AAATATGTGT chrVIII:505809-506202 - 46 6.81e-07 GAGACAATTA TGCATCCATACATT TCACCCAGAC chrVII:1000346-1000631 + 19 6.81e-07 CCACTAAGAT AGCACCCAAACACC TGCATATTTG chrXV:901419-901662 - 50 9.03e-07 TTCGGGACTG TTCACCCGTACATT TTACGTTTCC chrXI:382181-382467 + 30 9.90e-07 TTGCTGCTGT TGCATCCGGACATC ACACCCAACA chrXII:1028189-1028576 + 65 1.21e-06 AAGACAAAAT ATCACCCATGCACC AAAATGTATG chrXII:921702-922964 + 61 1.21e-06 GTTTGAAATT GACACCCGTACATA TTCCAATTCT chrXV:216293-216693 + 7 1.45e-06 TATCGG AACATCCGAGCACC CGCGCCTTCC chrV:270389-270658 + 13 1.59e-06 AAAAAAATTT ATCACCCATACATA CCACTAAATG chrVII:371212-371508 + 44 1.74e-06 AAAAAATACC GGCACCCATGCACC TCACACCGCC chrIV:321651-321969 + 38 1.74e-06 TTCATACCTT TACCTCCGTACACC AATCTTTATT chrX:607910-608137 + 22 2.12e-06 ATGCCAACCC TCCATCCATACATC CTATTTAACC chrIII:163473-163868 - 27 2.12e-06 GTTAAATTAC CGCACCCACGCACC CAACCGCGGC chrIX:254247-254550 - 10 2.31e-06 GGCGAGCTTC CGCACCCACACATT CTAATTGCC chrXIV:330801-331122 + 38 2.51e-06 TCAGATATCT TACATCCTTACATC TAAAGTAAAA chrXII:11254-11479 + 21 2.51e-06 ACACCACACC CACACCCACACACA CCCACACAGT chrIV:341253-341659 - 37 2.51e-06 AGTCTACTTT TCCATCCGTACATT TTAACACCCA chrXVI:281572-281926 + 66 2.98e-06 CTTACCTCTT TACACCCTTACACT TCCTTTGATT chrIV:1450734-1451474 - 29 3.24e-06 TTTAGACATT AACACCTGTACATA TTTGTATTTT chrXIII:650731-651237 + 46 3.52e-06 TAGACTGTTT TACACCTGTACATT TCACAGTTTT chrXVI:699889-700637 + 46 4.14e-06 ACCACTTCAA AACACCCAAGCACA GCATACTAAA chrXV:167986-168468 - 11 4.83e-06 GGTGGCTTTG AACACCCGTGCCTA TATTTAAGTT chrXIV:444246-445027 - 19 5.62e-06 CGTACCTCTT TAAATCCGTACATT ATTGTTTTGC chrXV:253798-254124 - 67 8.46e-06 CAAAACTTTT TTAATCCGTACACC GCGCGTATAA chrXII:424013-424557 + 72 8.46e-06 CGTAAGTCGC TACACACGTACATT GCTGTGGTGC chrXIV:241395-241779 + 25 9.06e-06 CCCAACATCC AGCACCTAAACACC ATCAATACAC chrX:391812-392128 + 73 1.26e-05 GCACACGCCC CACACCCAGACCTC CCTGCGAGCG chrII:167841-168225 + 51 2.08e-05 ACAGTGTTTT AAAACCCAGACATA TTTTTCACCA chrV:141074-141320 + 66 4.57e-05 TTTTCCTCTC AGTCTCCGTACATT TCTTATTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAYCCRTACAYH MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:639135-639475 8.6e-09 61_[-3]_25 chrIV:229443-229824 2.8e-08 69_[+3]_17 chrXII:932090-932527 6.5e-08 8_[-3]_78 chrXV:79763-80145 8.7e-08 43_[-3]_43 chrVII:149117-149518 1e-07 50_[-3]_36 chrXVI:378651-378991 1.8e-07 68_[-3]_18 chrXII:522146-522458 2.2e-07 49_[+3]_37 chrX:703251-703735 2.2e-07 7_[-3]_79 chrII:181291-181694 2.2e-07 51_[+3]_35 chrI:81871-82399 2.5e-07 24_[-3]_62 chrXVI:794450-794848 3e-07 54_[+3]_32 chrII:44947-45360 3e-07 65_[+3]_21 chrXII:241613-242010 3.8e-07 44_[+3]_42 chrXVI:279958-280236 4.2e-07 65_[+3]_21 chrIV:1355726-1356010 4.8e-07 44_[-3]_42 chrIV:1062768-1063094 4.8e-07 75_[-3]_11 chrXIII:549848-553293 5.3e-07 7_[-3]_79 chrVII:483411-483755 5.3e-07 14_[-3]_72 chrIV:1300914-1301322 5.3e-07 39_[+3]_47 chrXII:713150-713585 6e-07 54_[-3]_32 chrVI:95426-95887 6e-07 29_[-3]_57 chrV:53524-53966 6e-07 39_[-3]_47 chrVIII:505809-506202 6.8e-07 45_[-3]_41 chrVII:1000346-1000631 6.8e-07 18_[+3]_68 chrXV:901419-901662 9e-07 49_[-3]_37 chrXI:382181-382467 9.9e-07 29_[+3]_57 chrXII:1028189-1028576 1.2e-06 64_[+3]_22 chrXII:921702-922964 1.2e-06 60_[+3]_26 chrXV:216293-216693 1.5e-06 6_[+3]_80 chrV:270389-270658 1.6e-06 12_[+3]_74 chrVII:371212-371508 1.7e-06 43_[+3]_43 chrIV:321651-321969 1.7e-06 37_[+3]_49 chrX:607910-608137 2.1e-06 21_[+3]_65 chrIII:163473-163868 2.1e-06 26_[-3]_60 chrIX:254247-254550 2.3e-06 9_[-3]_77 chrXIV:330801-331122 2.5e-06 37_[+3]_49 chrXII:11254-11479 2.5e-06 20_[+3]_66 chrIV:341253-341659 2.5e-06 36_[-3]_50 chrXVI:281572-281926 3e-06 65_[+3]_21 chrIV:1450734-1451474 3.2e-06 28_[-3]_58 chrXIII:650731-651237 3.5e-06 45_[+3]_41 chrXVI:699889-700637 4.1e-06 45_[+3]_41 chrXV:167986-168468 4.8e-06 10_[-3]_76 chrXIV:444246-445027 5.6e-06 18_[-3]_68 chrXV:253798-254124 8.5e-06 66_[-3]_20 chrXII:424013-424557 8.5e-06 71_[+3]_15 chrXIV:241395-241779 9.1e-06 24_[+3]_62 chrX:391812-392128 1.3e-05 72_[+3]_14 chrII:167841-168225 2.1e-05 50_[+3]_36 chrV:141074-141320 4.6e-05 65_[+3]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAYCCRTACAYH MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WRCAYCCRTACAYH width=14 seqs=50 chrXV:639135-639475 ( 62) TACACCCGTACACC 1 chrIV:229443-229824 ( 70) AACATCCGTACATC 1 chrXII:932090-932527 ( 9) TACATCCGTACATC 1 chrXV:79763-80145 ( 44) AACACCCGTACATA 1 chrVII:149117-149518 ( 51) AGCATCCATACACC 1 chrXVI:378651-378991 ( 69) AACATCCGTACATT 1 chrXII:522146-522458 ( 50) AACATCCGTACACA 1 chrX:703251-703735 ( 8) AGCACCCATGCATC 1 chrII:181291-181694 ( 52) AGCACCCATACATT 1 chrI:81871-82399 ( 25) TACATCCGTGCACC 1 chrXVI:794450-794848 ( 55) AACACCCATACATA 1 chrII:44947-45360 ( 66) TGCATCCGTACATT 1 chrXII:241613-242010 ( 45) TACATCCGTACATA 1 chrXVI:279958-280236 ( 66) CGCATCCGTGCACC 1 chrIV:1355726-1356010 ( 45) AACATCCATACATT 1 chrIV:1062768-1063094 ( 76) AGCACCCACACATC 1 chrXIII:549848-553293 ( 8) CGCACCCATACATT 1 chrVII:483411-483755 ( 15) ATCACCCATACATC 1 chrIV:1300914-1301322 ( 40) AACATCCGTGCACT 1 chrXII:713150-713585 ( 55) CACATCCGTACATA 1 chrVI:95426-95887 ( 30) TGCACCCACACACC 1 chrV:53524-53966 ( 40) AACATCCGAACACC 1 chrVIII:505809-506202 ( 46) TGCATCCATACATT 1 chrVII:1000346-1000631 ( 19) AGCACCCAAACACC 1 chrXV:901419-901662 ( 50) TTCACCCGTACATT 1 chrXI:382181-382467 ( 30) TGCATCCGGACATC 1 chrXII:1028189-1028576 ( 65) ATCACCCATGCACC 1 chrXII:921702-922964 ( 61) GACACCCGTACATA 1 chrXV:216293-216693 ( 7) AACATCCGAGCACC 1 chrV:270389-270658 ( 13) ATCACCCATACATA 1 chrVII:371212-371508 ( 44) GGCACCCATGCACC 1 chrIV:321651-321969 ( 38) TACCTCCGTACACC 1 chrX:607910-608137 ( 22) TCCATCCATACATC 1 chrIII:163473-163868 ( 27) CGCACCCACGCACC 1 chrIX:254247-254550 ( 10) CGCACCCACACATT 1 chrXIV:330801-331122 ( 38) TACATCCTTACATC 1 chrXII:11254-11479 ( 21) CACACCCACACACA 1 chrIV:341253-341659 ( 37) TCCATCCGTACATT 1 chrXVI:281572-281926 ( 66) TACACCCTTACACT 1 chrIV:1450734-1451474 ( 29) AACACCTGTACATA 1 chrXIII:650731-651237 ( 46) TACACCTGTACATT 1 chrXVI:699889-700637 ( 46) AACACCCAAGCACA 1 chrXV:167986-168468 ( 11) AACACCCGTGCCTA 1 chrXIV:444246-445027 ( 19) TAAATCCGTACATT 1 chrXV:253798-254124 ( 67) TTAATCCGTACACC 1 chrXII:424013-424557 ( 72) TACACACGTACATT 1 chrXIV:241395-241779 ( 25) AGCACCTAAACACC 1 chrX:391812-392128 ( 73) CACACCCAGACCTC 1 chrII:167841-168225 ( 51) AAAACCCAGACATA 1 chrV:141074-141320 ( 66) AGTCTCCGTACATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAYCCRTACAYH MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 48633 bayes= 10.4148 E= 3.3e-041 57 -44 -224 21 80 -224 76 -163 -237 228 -1229 -395 163 -224 -1229 -1229 -1229 151 -1229 57 -395 237 -1229 -1229 -1229 231 -1229 -237 50 -1229 146 -296 -163 -92 -166 125 136 -1229 8 -1229 -1229 240 -1229 -1229 163 -224 -1229 -1229 -1229 101 -1229 100 -37 128 -1229 -5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAYCCRTACAYH MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 50 E= 3.3e-041 0.460000 0.140000 0.040000 0.360000 0.540000 0.040000 0.320000 0.100000 0.060000 0.920000 0.000000 0.020000 0.960000 0.040000 0.000000 0.000000 0.000000 0.540000 0.000000 0.460000 0.020000 0.980000 0.000000 0.000000 0.000000 0.940000 0.000000 0.060000 0.440000 0.000000 0.520000 0.040000 0.100000 0.100000 0.060000 0.740000 0.800000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.960000 0.040000 0.000000 0.000000 0.000000 0.380000 0.000000 0.620000 0.240000 0.460000 0.000000 0.300000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAYCCRTACAYH MEME-3 regular expression -------------------------------------------------------------------------------- [AT][AG]CA[CT]CC[GA]T[AG]CA[TC][CTA] -------------------------------------------------------------------------------- Time 840.69 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71774-74126 7.33e-01 100 chrI:81871-82399 1.54e-04 24_[-3(2.54e-07)]_62 chrI:138900-139346 4.01e-02 100 chrI:141522-141939 5.93e-01 100 chrI:166178-166780 2.57e-01 100 chrI:180961-181434 6.22e-02 100 chrI:182158-183189 3.90e-01 100 chrII:9355-9955 6.65e-04 31_[-1(1.40e-07)]_48 chrII:36245-36561 1.04e-04 44_[+2(9.43e-09)]_27 chrII:44947-45360 9.73e-04 65_[+3(3.02e-07)]_5_[-3(2.75e-06)]_\ 2 chrII:59837-61268 9.34e-01 100 chrII:87950-88579 8.72e-01 100 chrII:88949-90169 7.59e-02 100 chrII:135984-136244 6.54e-01 100 chrII:165078-165609 4.29e-02 100 chrII:167841-168225 3.40e-02 50_[+3(2.08e-05)]_36 chrII:181291-181694 1.97e-03 51_[+3(2.22e-07)]_35 chrII:197164-197810 1.46e-08 56_[+2(6.75e-13)]_15 chrII:226993-227326 1.95e-04 17_[-1(1.03e-07)]_62 chrII:255124-255730 3.83e-01 100 chrII:266209-266660 5.47e-04 36_[-1(4.82e-08)]_43 chrII:326389-327189 1.93e-06 61_[+1(8.63e-10)]_18 chrII:332141-333087 2.20e-01 100 chrII:342491-342891 9.21e-01 100 chrII:347403-347908 4.67e-04 51_[-1(1.40e-07)]_28 chrII:350574-351040 7.43e-04 69_[+2(1.02e-07)]_2 chrII:391059-391895 4.63e-01 100 chrII:405593-406159 4.62e-04 51_[+2(1.46e-07)]_20 chrII:415515-416067 9.85e-01 100 chrII:444736-445543 6.38e-02 23_[+3(9.62e-05)]_63 chrII:477039-477739 1.81e-01 100 chrII:544002-544812 7.61e-01 100 chrII:592884-593562 5.02e-01 100 chrII:603942-607123 9.38e-01 100 chrII:642858-643244 3.22e-07 14_[+1(2.70e-07)]_13_[-2(4.46e-07)]_\ 23 chrII:644971-645408 2.13e-06 69_[-1(2.21e-09)]_10 chrII:680369-682393 3.72e-01 100 chrIII:101-1021 2.30e-03 32_[-2(5.20e-06)]_39 chrIII:13973-16938 9.67e-01 100 chrIII:82458-82693 5.26e-01 100 chrIII:90879-91061 4.54e-02 100 chrIII:123332-123783 7.60e-09 78_[+1(1.26e-12)]_1 chrIII:127590-127869 6.14e-05 36_[+2(8.55e-09)]_35 chrIII:142429-142989 1.43e-07 50_[+1(1.55e-11)]_29 chrIII:149398-150193 9.48e-01 100 chrIII:151147-151616 9.07e-01 100 chrIII:163473-163868 1.94e-03 26_[-3(2.12e-06)]_24_[-3(7.19e-05)]_\ 22 chrIII:168068-168512 2.52e-06 69_[+1(3.02e-10)]_10 chrIII:177170-178787 8.19e-01 100 chrIII:227784-228189 9.78e-10 5_[+2(4.80e-10)]_42_[-1(3.31e-07)]_\ 3 chrIII:295317-296005 9.29e-01 100 chrIV:83442-83798 7.49e-08 18_[-1(1.55e-11)]_61 chrIV:117163-117949 3.84e-01 100 chrIV:130068-130987 4.96e-01 100 chrIV:159050-159968 4.73e-01 100 chrIV:216664-218074 3.59e-01 100 chrIV:220955-222368 7.87e-01 100 chrIV:229443-229824 6.68e-05 45_[+3(6.92e-06)]_10_[+3(2.82e-08)]_\ 17 chrIV:230002-230985 5.29e-01 100 chrIV:308022-309407 4.61e-01 100 chrIV:321651-321969 9.90e-03 37_[+3(1.74e-06)]_12_[+3(2.60e-05)]_\ 23 chrIV:341253-341659 2.49e-03 36_[-3(2.51e-06)]_50 chrIV:357976-358443 8.02e-01 100 chrIV:359189-359740 4.03e-01 100 chrIV:386217-386896 7.41e-01 100 chrIV:410027-410779 7.03e-18 25_[+2(1.15e-14)]_14_[-1(6.39e-11)]_\ 11 chrIV:410995-411667 9.35e-01 100 chrIV:434113-435134 5.91e-02 100 chrIV:437555-438607 2.39e-01 100 chrIV:465271-465513 5.41e-01 100 chrIV:488499-489106 1.68e-05 53_[+1(8.63e-10)]_26 chrIV:490545-491259 9.92e-01 100 chrIV:509059-509477 8.84e-01 100 chrIV:509632-511228 3.34e-01 100 chrIV:519662-519904 7.74e-09 9_[+2(1.04e-08)]_25_[-1(1.40e-07)]_\ 16 chrIV:520727-521105 5.14e-01 100 chrIV:538858-539269 5.13e-01 100 chrIV:555410-556642 8.59e-02 100 chrIV:568358-569507 4.19e-04 41_[-1(4.82e-08)]_38 chrIV:578832-580680 7.17e-02 5_[+2(3.80e-05)]_66 chrIV:600695-602415 2.23e-01 100 chrIV:619711-620233 7.81e-04 55_[+1(1.20e-07)]_24 chrIV:644928-645360 3.31e-06 67_[+1(3.02e-10)]_12 chrIV:667708-668187 4.11e-01 100 chrIV:758464-759641 3.80e-01 100 chrIV:802606-803026 2.24e-05 7_[-2(4.30e-08)]_64 chrIV:835734-836299 6.57e-01 100 chrIV:884279-884625 1.27e-04 61_[-1(3.36e-08)]_18 chrIV:892005-892667 4.56e-01 100 chrIV:929290-930322 8.05e-01 100 chrIV:946166-946569 2.14e-04 53_[-1(2.03e-07)]_26 chrIV:974056-974908 7.32e-01 100 chrIV:980766-981168 3.03e-04 65_[+1(1.03e-07)]_14 chrIV:992701-993001 1.65e-12 30_[+2(1.14e-08)]_12_[-1(1.55e-11)]_\ 8 chrIV:1013746-1013957 2.08e-01 100 chrIV:1016933-1017517 3.79e-05 40_[+1(2.21e-09)]_39 chrIV:1062768-1063094 3.58e-03 75_[-3(4.82e-07)]_11 chrIV:1075323-1075725 1.21e-09 6_[+1(6.39e-11)]_14_[-2(3.35e-06)]_\ 30 chrIV:1094992-1095664 4.39e-01 100 chrIV:1150721-1151171 7.88e-07 16_[-2(5.36e-11)]_55 chrIV:1165539-1165798 4.89e-01 100 chrIV:1166223-1166749 4.90e-01 100 chrIV:1175585-1176041 4.10e-04 65_[+2(7.51e-08)]_6 chrIV:1201557-1201944 6.74e-05 49_[+2(7.76e-09)]_22 chrIV:1233689-1234286 3.29e-01 100 chrIV:1236469-1238847 6.68e-01 100 chrIV:1256885-1257287 1.83e-03 14_[-2(7.11e-07)]_57 chrIV:1300914-1301322 1.33e-03 39_[+3(5.27e-07)]_3_[-3(3.40e-05)]_\ 30 chrIV:1305373-1305762 9.74e-01 100 chrIV:1344932-1345949 2.15e-01 100 chrIV:1352396-1353436 6.37e-02 100 chrIV:1355726-1356010 2.75e-03 20_[-3(3.38e-07)]_10_[-3(4.82e-07)]_\ 42 chrIV:1359222-1361419 5.14e-01 100 chrIV:1401214-1403366 2.94e-01 100 chrIV:1450734-1451474 8.36e-03 28_[-3(3.24e-06)]_58 chrIV:1461469-1461832 3.76e-01 100 chrIV:1489053-1489821 9.85e-01 100 chrIX:67505-68503 6.78e-01 100 chrIX:99623-100188 5.85e-01 100 chrIX:138559-139142 7.60e-01 100 chrIX:174912-175561 9.87e-01 100 chrIX:183293-183701 2.77e-15 1_[+1(4.13e-10)]_15_[-2(6.75e-13)]_\ 34 chrIX:197252-197780 7.79e-01 100 chrIX:210531-211346 9.55e-01 100 chrIX:248551-248993 1.91e-01 100 chrIX:254247-254550 2.89e-03 9_[-3(2.31e-06)]_77 chrIX:255067-257079 2.95e-01 100 chrIX:257339-258179 1.79e-01 100 chrIX:300059-300521 1.13e-05 31_[-2(7.76e-09)]_40 chrIX:316123-317638 1.91e-01 100 chrIX:325756-326075 8.44e-01 100 chrIX:336139-336623 4.39e-06 26_[+1(1.20e-07)]_13_[-2(9.36e-06)]_\ 11 chrIX:370224-370607 1.93e-01 100 chrIX:388125-388515 6.73e-01 100 chrIX:394821-395186 3.67e-01 100 chrM:73740-74395 9.68e-01 100 chrM:75113-75387 9.48e-01 100 chrV:42137-42559 7.31e-01 100 chrV:53524-53966 2.28e-03 22_[+3(7.40e-06)]_3_[-3(6.04e-07)]_\ 47 chrV:61169-62153 7.99e-01 100 chrV:67135-69734 1.79e-01 100 chrV:85131-86917 3.18e-01 100 chrV:99806-100318 9.93e-01 100 chrV:117649-118319 5.24e-01 100 chrV:130817-131363 9.42e-07 50_[+1(3.02e-10)]_29 chrV:135204-136214 4.99e-01 100 chrV:138462-140888 6.96e-01 100 chrV:141074-141320 5.49e-02 65_[+3(4.57e-05)]_21 chrV:176640-177365 6.09e-01 100 chrV:242001-242299 1.78e-01 100 chrV:249707-250922 8.35e-11 21_[+2(4.30e-08)]_13_[-1(3.02e-10)]_\ 16 chrV:270389-270658 1.16e-02 12_[+3(1.59e-06)]_25_[+3(1.26e-05)]_\ 35 chrV:288140-288785 1.26e-03 39_[+1(3.31e-07)]_40 chrV:305819-306933 5.34e-02 10_[-3(6.59e-05)]_76 chrV:311753-312279 1.95e-06 65_[+1(1.11e-10)]_14 chrV:322026-323273 9.82e-01 100 chrV:354678-355184 1.14e-01 100 chrV:362103-362506 1.17e-01 71_[+3(5.26e-05)]_15 chrV:364214-364517 8.53e-01 100 chrV:396178-397991 8.40e-01 100 chrV:422795-423481 7.09e-01 100 chrV:431002-432020 9.29e-01 100 chrV:434408-434756 1.35e-04 17_[+1(3.78e-07)]_62 chrV:435675-436009 3.10e-05 3_[-2(7.76e-09)]_68 chrV:438471-438974 5.60e-13 27_[+2(1.93e-10)]_15_[-1(2.57e-10)]_\ 8 chrV:441774-442682 8.15e-01 100 chrV:443012-443372 2.71e-06 68_[+1(4.13e-10)]_11 chrV:469247-469723 5.70e-13 21_[+2(1.93e-10)]_15_[-1(2.57e-10)]_\ 14 chrV:487093-487588 1.13e-05 49_[+1(2.21e-09)]_30 chrV:492203-492544 5.60e-04 37_[+1(1.20e-07)]_42 chrV:550883-551583 9.26e-01 100 chrVI:64144-65557 9.94e-01 100 chrVI:82477-83846 7.75e-01 100 chrVI:95426-95887 4.27e-04 29_[-3(6.04e-07)]_57 chrVI:101148-101479 4.13e-01 100 chrVI:136391-137679 8.14e-01 100 chrVI:157904-158264 9.78e-01 100 chrVI:162015-162364 6.86e-01 100 chrVI:167004-167841 6.16e-04 64_[+2(1.68e-07)]_7 chrVI:180728-181249 1.43e-07 44_[+1(1.55e-11)]_35 chrVI:190595-191775 1.16e-01 100 chrVI:210489-210893 9.78e-04 37_[-2(1.68e-07)]_34 chrVI:220799-222082 3.29e-01 100 chrVI:223249-224152 2.65e-01 100 chrVI:224314-225375 9.01e-02 13_[-3(7.84e-05)]_73 chrVI:226420-226934 7.09e-06 69_[+1(3.23e-09)]_10 chrVII:273-2258 1.98e-01 100 chrVII:110397-110774 4.79e-01 100 chrVII:115342-115725 6.02e-11 4_[+2(9.43e-09)]_37_[-1(1.01e-08)]_\ 9 chrVII:121893-122403 2.06e-01 100 chrVII:149117-149518 1.16e-03 50_[-3(1.05e-07)]_36 chrVII:168321-168704 9.63e-01 100 chrVII:168863-169316 4.31e-01 100 chrVII:205028-205752 9.34e-01 100 chrVII:254125-254716 6.91e-01 100 chrVII:277035-278699 5.82e-01 100 chrVII:287237-287865 9.29e-01 100 chrVII:310376-313010 1.11e-01 100 chrVII:319200-320117 3.89e-01 100 chrVII:323405-324092 6.19e-01 100 chrVII:328359-328976 2.66e-06 7_[-1(2.21e-09)]_72 chrVII:364911-366644 9.99e-01 100 chrVII:371212-371508 1.58e-03 43_[+3(1.74e-06)]_43 chrVII:371693-371920 9.05e-01 100 chrVII:405481-405905 8.20e-01 100 chrVII:411685-411995 5.49e-03 100 chrVII:412163-412589 1.95e-06 12_[-2(1.93e-10)]_59 chrVII:422879-423306 9.80e-05 49_[+2(9.43e-09)]_22 chrVII:438575-439825 7.34e-01 100 chrVII:440519-441183 2.40e-01 100 chrVII:483411-483755 2.69e-03 14_[-3(5.27e-07)]_72 chrVII:531262-531775 8.03e-01 100 chrVII:533843-535188 9.42e-01 100 chrVII:541724-542114 6.94e-06 22_[-1(2.21e-09)]_57 chrVII:544418-544944 9.99e-01 100 chrVII:555177-556690 6.51e-01 100 chrVII:556866-557885 7.23e-01 100 chrVII:648777-649397 6.06e-01 100 chrVII:661487-661928 5.91e-01 100 chrVII:681561-681766 8.28e-01 100 chrVII:682107-682675 9.51e-01 100 chrVII:700375-701277 8.56e-01 100 chrVII:703000-703468 7.74e-01 100 chrVII:706941-707170 8.98e-01 100 chrVII:726005-728248 8.61e-01 100 chrVII:730970-731416 2.50e-04 37_[-1(1.51e-07)]_42 chrVII:736202-736933 7.05e-01 100 chrVII:738895-739490 1.35e-06 23_[-1(4.13e-10)]_56 chrVII:766228-766691 1.30e-01 100 chrVII:771883-772331 7.35e-01 100 chrVII:774137-774636 1.46e-17 12_[+2(1.15e-14)]_14_[-1(6.39e-11)]_\ 24 chrVII:779405-779927 5.39e-07 41_[-1(3.54e-10)]_38 chrVII:780375-780825 8.90e-01 100 chrVII:786917-788739 8.41e-01 100 chrVII:794064-794500 9.92e-01 100 chrVII:823354-823676 5.70e-13 16_[+2(1.93e-10)]_15_[-1(2.57e-10)]_\ 19 chrVII:828452-829158 2.64e-04 10_[-2(1.46e-07)]_61 chrVII:845282-845875 9.35e-01 100 chrVII:856469-857591 7.44e-01 100 chrVII:876171-878146 4.01e-01 100 chrVII:878606-879043 1.03e-02 12_[-2(1.47e-05)]_59 chrVII:882448-884093 4.74e-01 100 chrVII:914840-915350 3.92e-01 100 chrVII:930884-931698 9.66e-01 100 chrVII:968765-969445 5.10e-01 100 chrVII:986619-987108 3.92e-01 100 chrVII:1000346-1000631 4.98e-04 18_[+3(6.81e-07)]_68 chrVII:1003986-1004389 3.92e-01 100 chrVIII:34403-36275 1.66e-01 100 chrVIII:62396-62896 9.74e-01 100 chrVIII:74756-75887 6.84e-01 100 chrVIII:103817-104765 3.07e-01 100 chrVIII:116010-116399 8.79e-01 100 chrVIII:125920-127499 6.46e-01 100 chrVIII:133924-135318 3.14e-01 100 chrVIII:145904-146450 9.05e-01 100 chrVIII:148921-149374 7.41e-01 100 chrVIII:175019-175737 2.39e-01 100 chrVIII:237777-238136 7.75e-05 4_[-2(9.43e-09)]_67 chrVIII:296677-297266 5.47e-01 100 chrVIII:358307-358788 6.31e-05 43_[-2(9.43e-09)]_28 chrVIII:375241-375922 3.42e-01 100 chrVIII:382689-383356 1.41e-01 100 chrVIII:388547-388992 8.52e-02 100 chrVIII:451370-453125 1.36e-01 100 chrVIII:455299-455827 7.92e-01 100 chrVIII:466806-467329 9.99e-05 14_[-1(1.71e-08)]_65 chrVIII:475452-475894 3.43e-01 100 chrVIII:505809-506202 5.65e-03 45_[-3(6.81e-07)]_41 chrX:59090-59452 6.63e-01 100 chrX:72993-75722 5.96e-01 100 chrX:89846-90436 6.77e-01 100 chrX:115887-116192 6.56e-01 100 chrX:120504-121912 6.08e-01 100 chrX:157444-157914 3.75e-01 100 chrX:197256-197431 1.44e-17 28_[+1(6.39e-11)]_14_[-2(1.15e-14)]_\ 8 chrX:204550-205002 4.39e-06 8_[+2(9.36e-06)]_13_[-1(1.20e-07)]_\ 29 chrX:227794-228627 2.86e-01 100 chrX:233051-234797 9.34e-04 64_[+2(1.46e-07)]_7 chrX:354005-354466 1.33e-03 58_[+2(1.68e-07)]_13 chrX:355183-355740 1.46e-06 4_[-1(4.82e-08)]_19_[+2(9.36e-06)]_\ 27 chrX:374300-374885 4.07e-04 6_[-2(1.46e-07)]_65 chrX:377603-377833 3.59e-01 100 chrX:378267-378529 5.60e-13 11_[+2(1.93e-10)]_15_[-1(2.57e-10)]_\ 24 chrX:390801-391323 1.78e-04 39_[+1(3.06e-08)]_40 chrX:391812-392128 3.90e-03 72_[+3(1.26e-05)]_14 chrX:396093-396932 9.92e-01 100 chrX:414784-415371 6.67e-01 100 chrX:415724-416234 6.56e-05 10_[+1(4.82e-08)]_69 chrX:422654-423352 2.31e-04 26_[-1(3.06e-08)]_22_[+1(9.85e-05)]_\ 10 chrX:424306-424717 2.03e-05 25_[-2(1.04e-08)]_46 chrX:453359-454725 5.53e-01 100 chrX:459211-459708 8.80e-01 100 chrX:517686-518094 2.45e-01 100 chrX:523823-524355 4.87e-06 25_[-2(2.52e-10)]_46 chrX:531582-532165 1.65e-12 4_[+2(1.14e-08)]_12_[-1(1.55e-11)]_\ 34 chrX:538023-538753 6.37e-02 100 chrX:540756-541929 9.15e-01 100 chrX:542115-542277 3.02e-01 100 chrX:542826-543268 3.72e-04 18_[-2(1.68e-07)]_53 chrX:545441-545771 4.60e-03 [-3(9.06e-06)]_86 chrX:607910-608137 5.05e-03 21_[+3(2.12e-06)]_4_[+3(1.96e-05)]_\ 47 chrX:617711-618134 1.22e-06 46_[+2(8.33e-11)]_25 chrX:620378-620657 9.80e-01 100 chrX:650879-651600 8.90e-01 100 chrX:669239-669708 9.76e-01 100 chrX:702548-703081 7.23e-01 100 chrX:703251-703735 6.84e-04 7_[-3(2.22e-07)]_79 chrX:745058-745516 2.74e-01 100 chrXI:46716-47032 7.36e-01 100 chrXI:67746-68355 6.36e-02 100 chrXI:74380-75228 9.51e-01 100 chrXI:84006-84430 2.04e-05 39_[+2(6.43e-08)]_32 chrXI:99668-99958 1.01e-01 100 chrXI:108458-109078 8.39e-01 100 chrXI:109252-109405 2.98e-01 100 chrXI:140771-141471 5.70e-01 100 chrXI:158234-159859 1.10e-01 100 chrXI:162268-162742 2.50e-04 40_[+1(4.82e-08)]_39 chrXI:163270-164414 4.71e-01 100 chrXI:202204-203292 8.07e-01 100 chrXI:302719-303230 6.56e-05 69_[-1(4.82e-08)]_10 chrXI:307973-308429 5.70e-13 1_[+1(2.57e-10)]_15_[-2(1.93e-10)]_\ 34 chrXI:313227-314099 9.30e-01 100 chrXI:322455-322672 4.38e-01 100 chrXI:325878-327484 2.65e-01 100 chrXI:334155-334929 2.06e-01 100 chrXI:355925-356557 2.30e-01 100 chrXI:382181-382467 4.14e-04 29_[+3(9.90e-07)]_57 chrXI:430825-431655 9.54e-01 100 chrXI:457556-459019 6.88e-01 100 chrXI:490753-491189 2.19e-04 46_[+2(1.46e-07)]_25 chrXI:513262-513602 1.55e-01 100 chrXI:514051-514438 2.60e-01 100 chrXI:517799-518060 9.41e-01 100 chrXI:519315-521047 3.49e-01 100 chrXI:578767-579621 2.58e-01 100 chrXI:617728-619249 5.11e-01 100 chrXII:11254-11479 3.83e-04 20_[+3(2.51e-06)]_46_[+3(9.24e-05)]_\ 6 chrXII:35176-35387 9.43e-01 100 chrXII:36726-36943 1.70e-01 100 chrXII:47227-49195 1.07e-01 100 chrXII:64314-64653 4.73e-01 100 chrXII:87591-88466 2.80e-01 100 chrXII:92242-92707 1.02e-01 100 chrXII:97285-97850 9.39e-01 100 chrXII:136521-136800 4.36e-01 100 chrXII:167785-168249 3.61e-06 29_[-2(2.52e-10)]_42 chrXII:198690-199684 3.73e-01 100 chrXII:214644-215055 4.41e-01 100 chrXII:232189-234215 1.48e-01 100 chrXII:241613-242010 1.68e-03 44_[+3(3.76e-07)]_7_[+3(1.10e-05)]_\ 21 chrXII:262827-263948 5.97e-02 100 chrXII:282594-284072 9.92e-02 100 chrXII:366036-367370 7.74e-01 100 chrXII:369662-370240 8.22e-01 100 chrXII:374218-374800 6.88e-01 100 chrXII:390555-391193 1.95e-01 100 chrXII:424013-424557 1.09e-02 71_[+3(8.46e-06)]_15 chrXII:426832-427581 9.76e-04 17_[-1(1.20e-07)]_62 chrXII:448524-448841 8.35e-11 26_[+1(3.02e-10)]_13_[-2(4.30e-08)]_\ 11 chrXII:449685-449878 6.63e-01 100 chrXII:459638-460676 4.37e-01 100 chrXII:498368-499637 4.84e-02 8_[+1(8.66e-05)]_71 chrXII:515313-516719 2.78e-01 100 chrXII:522146-522458 2.33e-03 24_[+3(4.48e-06)]_11_[+3(2.22e-07)]_\ 37 chrXII:589069-589268 4.59e-01 100 chrXII:592360-593006 8.38e-01 100 chrXII:602473-602714 8.30e-01 100 chrXII:605150-605615 4.06e-07 71_[-2(5.44e-10)] chrXII:628048-628626 9.00e-01 100 chrXII:636731-639975 9.08e-02 2_[-1(5.25e-05)]_77 chrXII:656855-657197 4.36e-10 1_[-2(1.15e-14)]_70 chrXII:673516-675222 7.41e-01 100 chrXII:712271-712890 6.62e-01 100 chrXII:713150-713585 1.16e-03 54_[-3(6.04e-07)]_32 chrXII:730936-732285 9.94e-01 100 chrXII:734426-737531 2.07e-01 100 chrXII:780486-781869 8.90e-01 100 chrXII:784101-784757 1.54e-03 44_[-1(5.55e-07)]_35 chrXII:793724-795363 1.32e-01 100 chrXII:796006-796178 9.75e-01 100 chrXII:796409-797542 6.58e-01 100 chrXII:818509-820332 8.69e-01 100 chrXII:821775-822930 9.98e-01 100 chrXII:837894-839372 1.99e-01 100 chrXII:875225-875583 8.84e-06 21_[+2(9.43e-09)]_50 chrXII:897675-898980 7.67e-01 100 chrXII:903163-904770 2.26e-01 100 chrXII:921702-922964 3.32e-03 34_[+3(4.79e-05)]_12_[+3(1.21e-06)]_\ 26 chrXII:932090-932527 6.51e-04 8_[-3(6.53e-08)]_19_[-3(8.29e-07)]_\ 45 chrXII:949047-950243 2.73e-01 100 chrXII:962844-963323 2.20e-01 100 chrXII:975806-976172 1.15e-03 52_[+1(1.51e-07)]_27 chrXII:1017674-1019533 3.61e-01 100 chrXII:1028189-1028576 4.95e-03 64_[+3(1.21e-06)]_22 chrXII:1051989-1052193 3.81e-06 38_[+1(4.13e-10)]_41 chrXIII:9746-10604 2.68e-01 100 chrXIII:91389-92075 1.83e-01 100 chrXIII:131661-132417 4.31e-01 100 chrXIII:145759-146280 5.39e-01 100 chrXIII:168118-169021 1.85e-01 100 chrXIII:195956-196286 2.22e-10 5_[+1(1.25e-08)]_44_[-2(1.25e-08)]_\ 1 chrXIII:225336-226626 7.89e-01 100 chrXIII:253380-253590 7.13e-01 100 chrXIII:259047-259369 2.45e-10 8_[+1(1.03e-07)]_23_[-2(2.52e-10)]_\ 19 chrXIII:267609-268340 4.90e-01 100 chrXIII:290467-291165 2.13e-06 76_[-1(2.21e-09)]_3 chrXIII:296741-298848 1.52e-01 100 chrXIII:302819-303331 4.67e-01 100 chrXIII:321068-321319 1.75e-17 12_[+1(6.39e-11)]_14_[-2(1.15e-14)]_\ 24 chrXIII:352110-352978 3.23e-01 100 chrXIII:362948-363286 2.14e-03 38_[-1(3.78e-07)]_41 chrXIII:372188-372651 4.85e-01 100 chrXIII:378775-379633 5.65e-01 100 chrXIII:420317-420869 2.06e-06 53_[+1(2.57e-10)]_26 chrXIII:431903-432963 3.71e-01 100 chrXIII:463199-463889 1.92e-02 59_[+2(9.36e-06)]_12 chrXIII:480428-480795 7.09e-06 68_[+1(3.23e-09)]_11 chrXIII:499010-500716 1.07e-01 100 chrXIII:504932-505228 3.13e-01 100 chrXIII:549848-553293 3.68e-03 7_[-3(5.27e-07)]_1_[-3(3.23e-05)]_\ 64 chrXIII:572247-572419 6.87e-01 100 chrXIII:572585-573581 9.84e-02 100 chrXIII:586430-587430 3.04e-01 100 chrXIII:631562-634790 1.37e-01 100 chrXIII:650731-651237 7.16e-03 45_[+3(3.52e-06)]_41 chrXIII:731921-733389 8.31e-01 100 chrXIII:747797-748174 9.41e-01 100 chrXIII:754455-754820 1.20e-01 1_[-3(5.51e-05)]_85 chrXIII:768190-768426 9.91e-01 100 chrXIII:797745-798192 9.93e-01 100 chrXIII:807904-808547 4.27e-05 79_[+1(2.21e-09)] chrXIII:837718-838342 1.17e-03 6_[-1(2.03e-07)]_73 chrXIII:861196-861414 1.58e-01 100 chrXIII:872704-872924 1.90e-01 100 chrXIII:892899-895274 5.52e-01 100 chrXIV:61955-64552 9.81e-01 100 chrXIV:96061-96521 3.16e-11 8_[+1(3.54e-10)]_13_[-2(4.67e-08)]_\ 29 chrXIV:102589-103170 9.44e-01 100 chrXIV:104611-105021 2.81e-06 38_[+2(1.27e-10)]_33 chrXIV:241395-241779 3.59e-02 24_[+3(9.06e-06)]_62 chrXIV:301473-302385 5.07e-01 100 chrXIV:302707-303997 5.21e-01 100 chrXIV:330801-331122 6.92e-03 37_[+3(2.51e-06)]_6_[+3(8.52e-05)]_\ 29 chrXIV:374640-375084 6.98e-05 56_[+2(5.75e-09)]_15 chrXIV:392314-392712 9.27e-01 100 chrXIV:413625-414895 2.63e-01 100 chrXIV:442843-443273 6.79e-01 100 chrXIV:444246-445027 2.72e-02 18_[-3(5.62e-06)]_2_[-3(9.67e-06)]_\ 52 chrXIV:461624-462397 9.14e-01 100 chrXIV:495196-495770 4.42e-01 100 chrXIV:499287-500733 8.30e-01 100 chrXIV:525074-525295 9.05e-01 100 chrXIV:546553-547350 2.67e-01 100 chrXIV:560202-560846 9.83e-01 100 chrXIV:568058-568788 8.72e-01 100 chrXIV:569683-570167 2.77e-15 [+1(4.13e-10)]_15_[-2(6.75e-13)]_35 chrXIV:576689-577539 5.01e-01 100 chrXIV:602117-602526 6.48e-09 40_[+2(6.75e-13)]_31 chrXIV:619728-620092 8.85e-01 100 chrXIV:631515-632133 3.16e-03 75_[-1(1.11e-06)]_4 chrXIV:632453-632796 4.92e-09 24_[+2(8.55e-09)]_15_[-1(1.51e-07)]_\ 11 chrXIV:725706-726333 9.76e-01 100 chrXIV:739300-739556 7.95e-01 100 chrXIV:783564-784323 1.47e-01 100 chrXV:79763-80145 5.07e-04 43_[-3(8.73e-08)]_43 chrXV:92764-94790 9.73e-01 100 chrXV:109518-110046 4.62e-01 100 chrXV:110867-111190 3.45e-04 26_[-2(4.67e-08)]_45 chrXV:113459-113877 4.04e-01 100 chrXV:159284-160137 8.02e-01 100 chrXV:161133-161766 1.63e-01 100 chrXV:167986-168468 7.10e-04 10_[-3(4.83e-06)]_4_[+3(1.43e-05)]_\ 58 chrXV:216293-216693 1.23e-03 6_[+3(1.45e-06)]_10_[+3(6.03e-05)]_\ 56 chrXV:226475-226914 7.21e-05 8_[-2(1.14e-08)]_63 chrXV:228062-228509 9.78e-01 100 chrXV:253798-254124 2.79e-02 66_[-3(8.46e-06)]_20 chrXV:274491-274856 5.11e-07 49_[+2(5.36e-11)]_22 chrXV:281828-282337 1.68e-01 100 chrXV:287769-288379 2.64e-01 100 chrXV:300923-301294 2.74e-05 38_[+2(1.25e-08)]_33 chrXV:340199-340672 9.96e-01 100 chrXV:348738-349381 4.37e-01 100 chrXV:353915-354287 2.50e-06 33_[-2(1.27e-10)]_38 chrXV:380604-381166 3.13e-01 100 chrXV:383019-383478 7.18e-01 100 chrXV:424097-424614 6.53e-01 100 chrXV:438402-438985 2.94e-06 65_[-1(1.01e-08)]_14 chrXV:444636-446156 8.12e-01 100 chrXV:464290-465206 7.37e-02 100 chrXV:504981-505492 7.83e-01 100 chrXV:571451-572123 8.79e-01 100 chrXV:580287-581407 5.61e-01 100 chrXV:594314-594680 4.44e-01 100 chrXV:619291-624667 2.37e-01 100 chrXV:639135-639475 2.24e-05 61_[-3(8.63e-09)]_25 chrXV:663324-664524 7.57e-01 100 chrXV:671123-671723 1.45e-01 100 chrXV:677996-679142 5.24e-01 100 chrXV:710133-710664 1.75e-01 100 chrXV:779678-780951 4.40e-01 100 chrXV:796995-797633 9.09e-01 100 chrXV:853650-854827 7.57e-15 7_[+1(1.11e-10)]_14_[-2(1.80e-11)]_\ 29 chrXV:866505-868109 9.91e-01 100 chrXV:877247-878055 1.47e-01 100 chrXV:882059-882444 9.32e-01 100 chrXV:892248-892565 2.14e-01 100 chrXV:901419-901662 2.56e-03 49_[-3(9.03e-07)]_37 chrXV:903988-904670 2.38e-01 100 chrXV:925182-925437 4.75e-02 100 chrXV:968119-968848 3.25e-01 100 chrXV:976285-976724 2.83e-04 9_[-1(3.06e-08)]_70 chrXV:978615-981191 9.81e-01 100 chrXV:986767-987518 9.10e-01 100 chrXV:1003953-1004993 8.74e-01 100 chrXV:1025719-1026247 7.62e-01 100 chrXV:1027910-1029435 3.46e-01 100 chrXV:1053899-1054670 9.39e-01 100 chrXVI:16626-16782 7.33e-01 100 chrXVI:17020-17517 9.89e-01 100 chrXVI:55883-56417 1.61e-04 77_[+1(4.82e-08)]_2 chrXVI:75010-75240 1.49e-01 100 chrXVI:75592-76802 2.97e-02 7_[+2(3.10e-05)]_64 chrXVI:135027-135838 9.76e-01 100 chrXVI:172871-174111 9.23e-01 100 chrXVI:188546-189279 9.09e-01 100 chrXVI:210061-210541 3.32e-01 100 chrXVI:239184-239529 2.68e-01 100 chrXVI:279958-280236 1.37e-03 65_[+3(4.23e-07)]_21 chrXVI:281572-281926 1.35e-02 49_[+3(1.43e-05)]_2_[+3(2.98e-06)]_\ 21 chrXVI:302625-304625 3.37e-01 100 chrXVI:338618-339342 3.92e-01 100 chrXVI:340522-340782 1.14e-02 100 chrXVI:378651-378991 5.69e-05 43_[-3(6.00e-06)]_11_[-3(1.83e-07)]_\ 18 chrXVI:406203-407748 9.63e-01 100 chrXVI:432291-434527 3.75e-01 100 chrXVI:435693-436267 5.81e-04 5_[-2(4.46e-07)]_66 chrXVI:520024-520523 9.54e-01 100 chrXVI:559909-560270 9.25e-01 100 chrXVI:571980-572515 5.33e-05 71_[+2(1.14e-08)] chrXVI:581853-582170 3.72e-01 100 chrXVI:588470-588866 1.94e-01 100 chrXVI:622233-622827 1.66e-03 68_[+1(7.95e-07)]_11 chrXVI:641996-643384 5.65e-01 100 chrXVI:678931-679402 3.11e-01 100 chrXVI:689392-689828 3.25e-10 4_[+2(1.46e-10)]_23_[-1(3.31e-07)]_\ 23 chrXVI:699889-700637 4.75e-03 45_[+3(4.14e-06)]_41 chrXVI:718379-719374 8.89e-01 100 chrXVI:731637-732294 7.23e-01 100 chrXVI:744096-744574 1.43e-04 40_[-1(2.52e-07)]_39 chrXVI:769011-769463 2.94e-06 28_[+1(1.01e-08)]_51 chrXVI:775700-776179 8.34e-01 100 chrXVI:794450-794848 2.85e-03 36_[+3(6.81e-07)]_4_[+3(3.02e-07)]_\ 32 chrXVI:810589-810833 5.23e-09 14_[+2(8.55e-09)]_15_[-1(1.51e-07)]_\ 21 chrXVI:819344-819850 3.81e-06 25_[-1(4.13e-10)]_54 chrXVI:856745-857111 1.45e-17 23_[+2(1.15e-14)]_14_[-1(6.39e-11)]_\ 13 chrXVI:860131-860660 1.65e-12 33_[+2(1.14e-08)]_12_[-1(1.55e-11)]_\ 5 chrXVI:880205-880564 1.46e-08 6_[-2(6.75e-13)]_65 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************