Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/AWRI1631--CAT8.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.03563
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/AWRI1631--CAT8.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.064013
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/AWRI1631--CAT8.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.078468
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.023094
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/AWRI1631--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/background
Finished invoke:
  name: bg  status: 0  time: 0.020549
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 721.092122
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 21.350551
Invoking:
  centrimo -seqlen 957 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/AWRI1631--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.17166
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.177223
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/background -primary CKGRAGRTCCBSGGTTCGATYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/AWRI1631--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.411516
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/background -primary TRGYCBAGTGGKTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/AWRI1631--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.422581
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/background -primary RNGRTGTATGGRTGT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/AWRI1631--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.318038
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/background -primary AARAAAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/AWRI1631--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.379605
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/background -primary CGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/AWRI1631--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.191643
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/background --motif CKGRAGRTCCBSGGTTCGATYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/AWRI1631--CAT8.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.268215
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/background --motif TRGYCBAGTGGKTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/AWRI1631--CAT8.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.256549
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/background --motif RNGRTGTATGGRTGT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/AWRI1631--CAT8.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.26959
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/background --motif AARAAAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/AWRI1631--CAT8.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.162218
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/background --motif CGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/AWRI1631--CAT8.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.403955
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.170384
Done