******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71841-73265 1.0000 100 chrI:81887-82337 1.0000 100 chrI:138967-139360 1.0000 100 chrI:166173-166604 1.0000 100 chrI:180937-181522 1.0000 100 chrI:182107-183125 1.0000 100 chrII:9400-9820 1.0000 100 chrII:35800-36587 1.0000 100 chrII:44976-45349 1.0000 100 chrII:60768-61985 1.0000 100 chrII:89633-90247 1.0000 100 chrII:165083-165422 1.0000 100 chrII:167843-168258 1.0000 100 chrII:168536-169517 1.0000 100 chrII:180515-181719 1.0000 100 chrII:197263-197850 1.0000 100 chrII:226970-227357 1.0000 100 chrII:266187-266690 1.0000 100 chrII:326550-327053 1.0000 100 chrII:332077-332751 1.0000 100 chrII:347407-348008 1.0000 100 chrII:350595-351061 1.0000 100 chrII:405648-406216 1.0000 100 chrII:415506-416073 1.0000 100 chrII:476859-477757 1.0000 100 chrII:544542-545131 1.0000 100 chrII:545361-545709 1.0000 100 chrII:592866-593456 1.0000 100 chrII:603664-604876 1.0000 100 chrII:605070-606294 1.0000 100 chrII:612265-613705 1.0000 100 chrII:642857-643320 1.0000 100 chrII:644913-645441 1.0000 100 chrIII:65-1022 1.0000 100 chrIII:58747-59826 1.0000 100 chrIII:82376-83438 1.0000 100 chrIII:90865-91144 1.0000 100 chrIII:107117-107798 1.0000 100 chrIII:123383-123800 1.0000 100 chrIII:127575-127913 1.0000 100 chrIII:142618-143030 1.0000 100 chrIII:149721-150150 1.0000 100 chrIII:151028-151578 1.0000 100 chrIII:163472-163875 1.0000 100 chrIII:164089-164277 1.0000 100 chrIII:168070-168567 1.0000 100 chrIII:178283-178691 1.0000 100 chrIII:227751-228418 1.0000 100 chrIII:295291-296013 1.0000 100 chrIII:315644-316595 1.0000 100 chrIV:7-354 1.0000 100 chrIV:83428-84024 1.0000 100 chrIV:117144-117752 1.0000 100 chrIV:125338-126290 1.0000 100 chrIV:129822-131027 1.0000 100 chrIV:216609-217543 1.0000 100 chrIV:221758-222372 1.0000 100 chrIV:229460-230475 1.0000 100 chrIV:307992-308467 1.0000 100 chrIV:308770-309417 1.0000 100 chrIV:321630-321991 1.0000 100 chrIV:340537-341658 1.0000 100 chrIV:355649-356727 1.0000 100 chrIV:358030-358492 1.0000 100 chrIV:359357-359975 1.0000 100 chrIV:410114-410767 1.0000 100 chrIV:411247-411619 1.0000 100 chrIV:433660-434891 1.0000 100 chrIV:437545-438079 1.0000 100 chrIV:465170-465591 1.0000 100 chrIV:488439-489166 1.0000 100 chrIV:490259-492325 1.0000 100 chrIV:519657-519964 1.0000 100 chrIV:520749-521162 1.0000 100 chrIV:538905-539278 1.0000 100 chrIV:568687-569246 1.0000 100 chrIV:569430-569620 1.0000 100 chrIV:578879-580449 1.0000 100 chrIV:619732-620229 1.0000 100 chrIV:644794-645381 1.0000 100 chrIV:667701-668216 1.0000 100 chrIV:758767-759649 1.0000 100 chrIV:769725-770006 1.0000 100 chrIV:802579-803012 1.0000 100 chrIV:835774-836340 1.0000 100 chrIV:884257-884607 1.0000 100 chrIV:946124-946780 1.0000 100 chrIV:980713-981223 1.0000 100 chrIV:992687-993217 1.0000 100 chrIV:1013429-1014032 1.0000 100 chrIV:1016957-1017497 1.0000 100 chrIV:1075220-1075745 1.0000 100 chrIV:1095142-1095649 1.0000 100 chrIV:1150733-1151163 1.0000 100 chrIV:1175425-1176436 1.0000 100 chrIV:1201538-1202112 1.0000 100 chrIV:1236608-1237948 1.0000 100 chrIV:1256835-1257291 1.0000 100 chrIV:1278633-1279023 1.0000 100 chrIV:1300847-1301367 1.0000 100 chrIV:1305392-1305825 1.0000 100 chrIV:1352013-1353481 1.0000 100 chrIV:1354777-1356009 1.0000 100 chrIV:1359366-1359880 1.0000 100 chrIV:1400998-1402941 1.0000 100 chrIV:1450755-1451548 1.0000 100 chrIV:1461432-1461845 1.0000 100 chrIX:68239-68596 1.0000 100 chrIX:98181-100089 1.0000 100 chrIX:130326-134163 1.0000 100 chrIX:174870-175705 1.0000 100 chrIX:183301-183697 1.0000 100 chrIX:197347-197787 1.0000 100 chrIX:210503-211460 1.0000 100 chrIX:248505-249327 1.0000 100 chrIX:254219-254585 1.0000 100 chrIX:255142-255845 1.0000 100 chrIX:257346-257741 1.0000 100 chrIX:257934-258182 1.0000 100 chrIX:299995-300511 1.0000 100 chrIX:315672-316614 1.0000 100 chrIX:322640-324385 1.0000 100 chrIX:325744-326216 1.0000 100 chrIX:335768-336641 1.0000 100 chrIX:370161-370606 1.0000 100 chrV:53498-53983 1.0000 100 chrV:61218-62160 1.0000 100 chrV:67203-69307 1.0000 100 chrV:85103-87457 1.0000 100 chrV:99846-100306 1.0000 100 chrV:117424-118288 1.0000 100 chrV:130850-131430 1.0000 100 chrV:135120-136088 1.0000 100 chrV:138443-139835 1.0000 100 chrV:140211-140914 1.0000 100 chrV:176908-177457 1.0000 100 chrV:249770-250523 1.0000 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chrVII:555196-555854 1.0000 100 chrVII:561239-561733 1.0000 100 chrVII:648795-649369 1.0000 100 chrVII:661512-661939 1.0000 100 chrVII:700438-701244 1.0000 100 chrVII:706917-707187 1.0000 100 chrVII:726364-728329 1.0000 100 chrVII:730965-731460 1.0000 100 chrVII:736191-736798 1.0000 100 chrVII:738918-739612 1.0000 100 chrVII:774145-774681 1.0000 100 chrVII:779400-779932 1.0000 100 chrVII:788109-788790 1.0000 100 chrVII:794098-794556 1.0000 100 chrVII:823344-823726 1.0000 100 chrVII:828338-829006 1.0000 100 chrVII:845411-846070 1.0000 100 chrVII:856660-857676 1.0000 100 chrVII:876209-878135 1.0000 100 chrVII:878561-879049 1.0000 100 chrVII:902898-903111 1.0000 100 chrVII:930853-931625 1.0000 100 chrVII:1000313-1000627 1.0000 100 chrVII:1004027-1004421 1.0000 100 chrVIII:34563-35098 1.0000 100 chrVIII:35296-36114 1.0000 100 chrVIII:62511-62947 1.0000 100 chrVIII:63205-63515 1.0000 100 chrVIII:74915-75878 1.0000 100 chrVIII:103541-105312 1.0000 100 chrVIII:115863-116391 1.0000 100 chrVIII:125883-126327 1.0000 100 chrVIII:133956-134793 1.0000 100 chrVIII:145874-146473 1.0000 100 chrVIII:148889-149331 1.0000 100 chrVIII:173394-175740 1.0000 100 chrVIII:237577-238130 1.0000 100 chrVIII:296863-297248 1.0000 100 chrVIII:358284-358769 1.0000 100 chrVIII:382897-383374 1.0000 100 chrVIII:388652-388999 1.0000 100 chrVIII:451456-452650 1.0000 100 chrVIII:466810-467169 1.0000 100 chrVIII:475505-475911 1.0000 100 chrVIII:505783-506243 1.0000 100 chrX:58991-59391 1.0000 100 chrX:73334-74601 1.0000 100 chrX:74912-75721 1.0000 100 chrX:89997-90454 1.0000 100 chrX:115448-116265 1.0000 100 chrX:120497-121888 1.0000 100 chrX:157458-157887 1.0000 100 chrX:196413-197446 1.0000 100 chrX:204550-204983 1.0000 100 chrX:233666-234129 1.0000 100 chrX:265416-265771 1.0000 100 chrX:353994-354459 1.0000 100 chrX:355184-355812 1.0000 100 chrX:374169-374833 1.0000 100 chrX:378186-378550 1.0000 100 chrX:390781-392113 1.0000 100 chrX:396585-396948 1.0000 100 chrX:414600-415226 1.0000 100 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chrXIII:747318-748148 1.0000 100 chrXIII:754338-755227 1.0000 100 chrXIII:768196-768451 1.0000 100 chrXIII:807953-808553 1.0000 100 chrXIII:837701-838225 1.0000 100 chrXIII:872299-872932 1.0000 100 chrXIII:873440-874185 1.0000 100 chrXIII:887047-888760 1.0000 100 chrXIV:6616-6997 1.0000 100 chrXIV:62922-64013 1.0000 100 chrXIV:64230-64428 1.0000 100 chrXIV:96013-96530 1.0000 100 chrXIV:102582-103072 1.0000 100 chrXIV:104571-105046 1.0000 100 chrXIV:217362-218064 1.0000 100 chrXIV:240460-242158 1.0000 100 chrXIV:302749-303663 1.0000 100 chrXIV:330784-331225 1.0000 100 chrXIV:374633-375126 1.0000 100 chrXIV:442758-444001 1.0000 100 chrXIV:444252-445096 1.0000 100 chrXIV:495182-495759 1.0000 100 chrXIV:499250-500714 1.0000 100 chrXIV:518064-519139 1.0000 100 chrXIV:525070-525327 1.0000 100 chrXIV:546573-547664 1.0000 100 chrXIV:560400-560869 1.0000 100 chrXIV:568052-569113 1.0000 100 chrXIV:569453-570170 1.0000 100 chrXIV:602076-602539 1.0000 100 chrXIV:603080-604261 1.0000 100 chrXIV:631647-632123 1.0000 100 chrXIV:632410-632881 1.0000 100 chrXIV:721992-722944 1.0000 100 chrXIV:725822-726337 1.0000 100 chrXIV:783481-784326 1.0000 100 chrXV:79713-80158 1.0000 100 chrXV:80558-81147 1.0000 100 chrXV:92734-93988 1.0000 100 chrXV:94333-94802 1.0000 100 chrXV:109531-110052 1.0000 100 chrXV:110868-111213 1.0000 100 chrXV:113505-113883 1.0000 100 chrXV:159151-160140 1.0000 100 chrXV:161092-161755 1.0000 100 chrXV:167950-168899 1.0000 100 chrXV:216278-216683 1.0000 100 chrXV:226433-226898 1.0000 100 chrXV:228111-228742 1.0000 100 chrXV:253763-254152 1.0000 100 chrXV:274450-274991 1.0000 100 chrXV:281981-282881 1.0000 100 chrXV:287999-288423 1.0000 100 chrXV:300890-301704 1.0000 100 chrXV:340159-340625 1.0000 100 chrXV:353908-354333 1.0000 100 chrXV:424402-424661 1.0000 100 chrXV:438460-439057 1.0000 100 chrXV:439595-439773 1.0000 100 chrXV:444684-447156 1.0000 100 chrXV:462340-462586 1.0000 100 chrXV:464281-464975 1.0000 100 chrXV:487441-487843 1.0000 100 chrXV:504970-505511 1.0000 100 chrXV:514266-514714 1.0000 100 chrXV:571731-572891 1.0000 100 chrXV:585399-586303 1.0000 100 chrXV:592080-592922 1.0000 100 chrXV:594305-594644 1.0000 100 chrXV:639106-639457 1.0000 100 chrXV:663497-664230 1.0000 100 chrXV:678175-679204 1.0000 100 chrXV:710127-710532 1.0000 100 chrXV:722924-724728 1.0000 100 chrXV:779332-780976 1.0000 100 chrXV:853879-854758 1.0000 100 chrXV:866492-867064 1.0000 100 chrXV:901423-901712 1.0000 100 chrXV:925180-925424 1.0000 100 chrXV:968093-968423 1.0000 100 chrXV:976270-976723 1.0000 100 chrXV:978799-979179 1.0000 100 chrXV:980124-980993 1.0000 100 chrXV:1003976-1004399 1.0000 100 chrXV:1025677-1026089 1.0000 100 chrXV:1028196-1029425 1.0000 100 chrXVI:55871-56425 1.0000 100 chrXVI:75271-76132 1.0000 100 chrXVI:76323-77119 1.0000 100 chrXVI:135153-135852 1.0000 100 chrXVI:172193-173864 1.0000 100 chrXVI:188335-189351 1.0000 100 chrXVI:202888-203272 1.0000 100 chrXVI:210065-210483 1.0000 100 chrXVI:279970-280240 1.0000 100 chrXVI:280595-281218 1.0000 100 chrXVI:281605-282320 1.0000 100 chrXVI:302627-302994 1.0000 100 chrXVI:303239-304130 1.0000 100 chrXVI:338765-339149 1.0000 100 chrXVI:339927-340786 1.0000 100 chrXVI:378659-380582 1.0000 100 chrXVI:404515-404864 1.0000 100 chrXVI:405083-406655 1.0000 100 chrXVI:406901-407796 1.0000 100 chrXVI:432575-434114 1.0000 100 chrXVI:435644-436205 1.0000 100 chrXVI:519346-520537 1.0000 100 chrXVI:559973-560292 1.0000 100 chrXVI:572032-572614 1.0000 100 chrXVI:581855-582275 1.0000 100 chrXVI:622158-623100 1.0000 100 chrXVI:627282-628333 1.0000 100 chrXVI:689377-689873 1.0000 100 chrXVI:699863-700626 1.0000 100 chrXVI:731654-732569 1.0000 100 chrXVI:744088-744589 1.0000 100 chrXVI:768763-769507 1.0000 100 chrXVI:775643-776083 1.0000 100 chrXVI:794453-794845 1.0000 100 chrXVI:810582-811737 1.0000 100 chrXVI:819333-820310 1.0000 100 chrXVI:856702-857144 1.0000 100 chrXVI:860163-860731 1.0000 100 chrXVI:879403-880596 1.0000 100 chrXVI:918496-920117 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 516 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 51600 N= 516 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.299 C 0.201 G 0.201 T 0.299 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/background): A 0.303 C 0.197 G 0.197 T 0.303 ******************************************************************************** ******************************************************************************** MOTIF CKGRAGRTCCBSGGTTCGATYCCS MEME-1 width = 24 sites = 77 llr = 1372 E-value = 1.2e-266 ******************************************************************************** -------------------------------------------------------------------------------- Motif CKGRAGRTCCBSGGTTCGATYCCS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :2246242:2:12::::2a2::1: pos.-specific C 721111:18643::::a::25a75 probability G 3454376::1357a:::8:1:::4 matrix T :221:::721311:aa:::55:31 bits 2.3 * * 2.1 * * * 1.9 * * * 1.6 **** * * Relative 1.4 * ****** * Entropy 1.2 * * * ****** * (25.7 bits) 0.9 * ** * ******* **** 0.7 * *** * ******** **** 0.5 * * *************** **** 0.2 ******************* **** 0.0 ------------------------ Multilevel CGGAAGGTCCCGGGTTCGATTCCC consensus GTTGG AATAGCA A C TG sequence A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKGRAGRTCCBSGGTTCGATYCCS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------ chrXIV:631647-632123 - 21 1.09e-14 GCTTAGGGTG CGGGAGGTCCCGGGTTCGAGTCCC GGCTCGCCCC chrIII:123383-123800 - 46 1.09e-14 GCTTAGGGTG CGGGAGGTCCCGGGTTCGAGTCCC GGCTCGCCCC chrXII:1051902-1052213 - 74 4.23e-11 AAC GCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrV:551000-551589 - 51 4.23e-11 TGCTAATAAC GCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrV:443031-443384 - 55 4.23e-11 TGCTAATAAC GCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrII:197263-197850 + 28 4.23e-11 TGCTAATAAC GCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrXVI:856702-857144 + 68 8.84e-11 CCTTAGCATG GGAGAGGTCTCCGGTTCGATTCCG GACTCGTCC chrXIII:321023-321328 - 32 8.84e-11 CCTTAGCATG GGAGAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrXI:219774-220089 + 53 8.84e-11 CCTTAGCATG GGAGAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrVII:774145-774681 + 25 8.84e-11 CCTTAGCATG GGAGAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrIV:410114-410767 + 28 8.84e-11 CCTTAGCATG GGAGAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrXVI:860163-860731 + 19 1.17e-10 ACGTTGCCAT CGTTGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrXVI:572032-572614 + 33 1.17e-10 ACGTTGCCAT CGTTGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrXV:226433-226898 - 6 1.17e-10 ACGTTGCCAT CGTTGGGCCCCCGGTTCGATTCCG GGCTT chrXIII:195951-196296 - 5 1.17e-10 ACAAAGCATG CGAGAGGCCCTGGGTTCAATTCCC AGCT chrX:396585-396948 - 20 1.17e-10 ACGTTGCCAT CGTTGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrVIII:475505-475911 - 58 1.17e-10 CCTTCACACG GCAAAGGTCCCGAGTTCGATCCTC GGTTGGAACA chrVI:180656-181287 - 63 1.17e-10 ACGTTGCCAT CGTTGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrIV:1075220-1075745 - 50 1.17e-10 CCTTCACACG GCAAAGGTCCCGAGTTCGATCCTC GGTTGGAACA chrXIII:290557-291139 + 41 1.35e-10 ACGCTTTCAC CGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrV:487061-487610 - 56 1.35e-10 ACGCTTTCAC CGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrV:354686-355349 + 5 1.35e-10 TCAC CGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrV:176908-177457 + 5 1.35e-10 TCAC CGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrIV:1016957-1017497 - 40 1.35e-10 ACGTTCTCAC CGTGGAGACCGGGGTTCGACTCCC CGCTTCGGAG chrXIV:96013-96530 - 30 2.30e-10 ACCCTTCCAA GGTGGGGACACGGGTTCGATTCTC GTACCGCTCA chrVII:779400-779932 + 38 2.30e-10 ACCCTTCCAA GGTGGGGACACGGGTTCGATTCTC GTACCGCTCA chrXII:448498-448850 - 36 2.63e-10 CGGTTTTGAT CCGGACAACCCCGGTTCGAATCCG GGTAGGACCT chrVIII:133956-134793 + 35 2.63e-10 CGGTTTTGAT CCGGACAACCCCGGTTCGAATCCG GGTAGGACCT chrIV:488439-489166 - 55 2.63e-10 CCTTTACACG GCGAAGATCCCGAGTTCGAACCTC GGTTGGATCA chrIII:168070-168567 - 43 2.63e-10 CGGTTTTGAT CCGGACAACCCCGGTTCGAATCCG GGTAGGACCT chrII:326550-327053 - 51 2.63e-10 CCTTTACACG GCGAAGATCCCGAGTTCGAACCTC GGTTGGATCA chrXIII:131641-132106 - 12 4.36e-10 GACTTCTAAT CAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrX:374169-374833 - 65 4.36e-10 GACTTCTAAT CAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrV:435602-436005 - 9 4.36e-10 GACTCTTAAT CATAAGGTTAGGGGTTCGAGCCCC CTACAGGG chrIX:299995-300511 - 35 4.36e-10 GACTCTTAAT CATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIV:1201538-1202112 + 14 4.36e-10 GACTCTTAAT CATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIV:568687-569246 + 4 4.36e-10 AAT CAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrIII:151028-151578 - 41 4.36e-10 GACTCTTAAT CATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrII:405648-406216 + 34 4.36e-10 GACTTCTAAT CAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrXV:663497-664230 - 9 5.58e-10 GCTTAACACG CAGAACGTCCCCAGTTCGATCCTG GGCGAAAT chrXIII:420336-420841 - 60 5.58e-10 GCTTAACACG CAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrVII:823344-823726 + 37 5.58e-10 GCTTAACACG CAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrV:438512-438986 + 41 5.58e-10 GCTTAACACG CAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrVII:115329-115725 + 73 7.09e-10 GCAAGGATAC CGAAATGTCAGGGGTTCGAGCCCC CTAT chrIV:359357-359975 + 23 7.09e-10 GCAAGGATAC CGAAATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrVIII:358284-358769 - 12 1.58e-09 GTCAAGTTAT CTGGAGGTCCTGTGTTCGATCCAC AGAATTCGCA chrVIII:237577-238130 - 55 1.58e-09 GTCAAGTTAT CTGGAGGTCCTGTGTTCGATCCAC AGAATTCGCA chrVII:440500-441029 - 12 1.58e-09 GTCAAGTTAT CTGGAGGTCCTGTGTTCGATCCAC AGAATTCGCA chrIV:1095142-1095649 - 35 1.58e-09 GTCAAGATAT CTGGAGGTCCTGTGTTCGATCCAC AGAGTTCGCA chrIV:1256835-1257291 - 5 1.97e-09 TGCTTCCCAA GCATGGGGCCCGGGTTCGATTCCC GGCT chrXIII:807953-808553 - 53 2.19e-09 CGGTTCTGAT CCGAACAACCCCAGTTCGAATCCG GGTGGGACCT chrVIII:115863-116391 - 40 2.71e-09 CACTAGTAAT GTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIV:433660-434891 - 49 2.71e-09 CACTAGTAAT GTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrII:266187-266690 + 29 2.71e-09 CACTAGTAAT GTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrXV:976270-976723 + 14 1.18e-08 GTCTCATAAT CTGAAGGTCGAGAGTTCGAACCTC CCCTGGAGCA chrX:422734-423235 + 42 1.18e-08 GTCTCATAAT CTGAAGGTCGAGAGTTCGAACCTC CCCTGGAGCA chrXIV:632410-632881 + 44 2.60e-08 GACTGTTAAT CGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXII:975765-976184 - 69 2.60e-08 CTGTTAAT CGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrVII:730965-731460 + 15 2.60e-08 GACTGTTAAT CGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrIII:127575-127913 + 62 2.60e-08 GACTGTTAAT CGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXII:374201-374680 + 4 5.00e-08 AAC CAGAAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrV:492215-492559 - 25 5.00e-08 GGCTACGAAC CAGAAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrIV:619732-620229 - 49 5.00e-08 GGCTACGAAC CAGAAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrX:415735-416234 - 7 6.82e-08 AGATTGCAAT CGAAGGGTTGCAGGTTCAATTCCT GTCCGT chrXIII:837701-838225 + 70 1.15e-07 ACTACGAAAT CTTGAGATCGGGCGTTCGACTCGC CCCCGGG chrXIII:463332-463915 + 19 1.23e-07 CGCTTGTCGC GTGCCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrXII:426891-427489 + 30 1.23e-07 CGCTTGTCGC GTGCCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrX:355184-355812 + 46 1.23e-07 CGCTTGTCGC GTGCCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrX:204550-204983 + 57 1.23e-07 CGCTTGTCGC GTGCCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrXVI:744088-744589 + 34 1.42e-07 CACTTGTAAT GCAAAGGTCGTTAGTTCAATTCTG ACAGGTGGCA chrXVI:435644-436205 - 29 1.42e-07 GATTGCAAAT CTGTTGGTCCTTAGTTCGATCCTG AGTGCGAGCT chrXIII:362928-363338 + 19 3.60e-07 TCGTTGTGGC CGATGAAACCCTGGTTCGATTCTA GGAGATGGCA chrV:434395-434773 - 17 3.60e-07 TCGTTGTGGC CGATGAAACCCTGGTTCGATTCTA GGAGATGGCA chrIII:149721-150150 + 73 7.42e-07 GGCTCATAAC CCTGATGTCCTCGGATCGAAACCG AGCG chrIX:335768-336641 - 74 1.22e-06 AAG CTGTAAATCCTGGGTACAAATCGG GATAGCAAGT chrIV:519657-519964 - 43 1.86e-06 AATAAGTTAT TGAAGGATGCGAGGTTCGAACTCG CGCGGACAAC chrII:347407-348008 - 6 1.86e-06 AAAATATTAC TGAAGGATGCGAGGTTCGAACTCG CGCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKGRAGRTCCBSGGTTCGATYCCS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631647-632123 1.1e-14 20_[-1]_56 chrIII:123383-123800 1.1e-14 45_[-1]_31 chrXII:1051902-1052213 4.2e-11 73_[-1]_3 chrV:551000-551589 4.2e-11 50_[-1]_26 chrV:443031-443384 4.2e-11 54_[-1]_22 chrII:197263-197850 4.2e-11 27_[+1]_49 chrXVI:856702-857144 8.8e-11 67_[+1]_9 chrXIII:321023-321328 8.8e-11 31_[-1]_45 chrXI:219774-220089 8.8e-11 52_[+1]_24 chrVII:774145-774681 8.8e-11 24_[+1]_52 chrIV:410114-410767 8.8e-11 27_[+1]_49 chrXVI:860163-860731 1.2e-10 18_[+1]_58 chrXVI:572032-572614 1.2e-10 32_[+1]_44 chrXV:226433-226898 1.2e-10 5_[-1]_71 chrXIII:195951-196296 1.2e-10 4_[-1]_72 chrX:396585-396948 1.2e-10 19_[-1]_57 chrVIII:475505-475911 1.2e-10 57_[-1]_19 chrVI:180656-181287 1.2e-10 62_[-1]_14 chrIV:1075220-1075745 1.2e-10 49_[-1]_27 chrXIII:290557-291139 1.3e-10 40_[+1]_36 chrV:487061-487610 1.3e-10 55_[-1]_21 chrV:354686-355349 1.3e-10 4_[+1]_72 chrV:176908-177457 1.3e-10 4_[+1]_72 chrIV:1016957-1017497 1.3e-10 39_[-1]_37 chrXIV:96013-96530 2.3e-10 29_[-1]_47 chrVII:779400-779932 2.3e-10 37_[+1]_39 chrXII:448498-448850 2.6e-10 35_[-1]_41 chrVIII:133956-134793 2.6e-10 34_[+1]_42 chrIV:488439-489166 2.6e-10 54_[-1]_22 chrIII:168070-168567 2.6e-10 42_[-1]_34 chrII:326550-327053 2.6e-10 50_[-1]_26 chrXIII:131641-132106 4.4e-10 11_[-1]_65 chrX:374169-374833 4.4e-10 64_[-1]_12 chrV:435602-436005 4.4e-10 8_[-1]_68 chrIX:299995-300511 4.4e-10 34_[-1]_42 chrIV:1201538-1202112 4.4e-10 13_[+1]_63 chrIV:568687-569246 4.4e-10 3_[+1]_73 chrIII:151028-151578 4.4e-10 40_[-1]_36 chrII:405648-406216 4.4e-10 33_[+1]_43 chrXV:663497-664230 5.6e-10 8_[-1]_68 chrXIII:420336-420841 5.6e-10 59_[-1]_17 chrVII:823344-823726 5.6e-10 36_[+1]_40 chrV:438512-438986 5.6e-10 40_[+1]_36 chrVII:115329-115725 7.1e-10 72_[+1]_4 chrIV:359357-359975 7.1e-10 22_[+1]_54 chrVIII:358284-358769 1.6e-09 11_[-1]_65 chrVIII:237577-238130 1.6e-09 54_[-1]_22 chrVII:440500-441029 1.6e-09 11_[-1]_65 chrIV:1095142-1095649 1.6e-09 34_[-1]_42 chrIV:1256835-1257291 2e-09 4_[-1]_72 chrXIII:807953-808553 2.2e-09 52_[-1]_24 chrVIII:115863-116391 2.7e-09 39_[-1]_37 chrIV:433660-434891 2.7e-09 48_[-1]_28 chrII:266187-266690 2.7e-09 28_[+1]_48 chrXV:976270-976723 1.2e-08 13_[+1]_63 chrX:422734-423235 1.2e-08 41_[+1]_35 chrXIV:632410-632881 2.6e-08 43_[+1]_33 chrXII:975765-976184 2.6e-08 68_[-1]_8 chrVII:730965-731460 2.6e-08 14_[+1]_62 chrIII:127575-127913 2.6e-08 61_[+1]_15 chrXII:374201-374680 5e-08 3_[+1]_73 chrV:492215-492559 5e-08 24_[-1]_52 chrIV:619732-620229 5e-08 48_[-1]_28 chrX:415735-416234 6.8e-08 6_[-1]_70 chrXIII:837701-838225 1.1e-07 69_[+1]_7 chrXIII:463332-463915 1.2e-07 18_[+1]_58 chrXII:426891-427489 1.2e-07 29_[+1]_47 chrX:355184-355812 1.2e-07 45_[+1]_31 chrX:204550-204983 1.2e-07 56_[+1]_20 chrXVI:744088-744589 1.4e-07 33_[+1]_43 chrXVI:435644-436205 1.4e-07 28_[-1]_48 chrXIII:362928-363338 3.6e-07 18_[+1]_58 chrV:434395-434773 3.6e-07 16_[-1]_60 chrIII:149721-150150 7.4e-07 72_[+1]_4 chrIX:335768-336641 1.2e-06 73_[-1]_3 chrIV:519657-519964 1.9e-06 42_[-1]_34 chrII:347407-348008 1.9e-06 5_[-1]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKGRAGRTCCBSGGTTCGATYCCS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CKGRAGRTCCBSGGTTCGATYCCS width=24 seqs=77 chrXIV:631647-632123 ( 21) CGGGAGGTCCCGGGTTCGAGTCCC 1 chrIII:123383-123800 ( 46) CGGGAGGTCCCGGGTTCGAGTCCC 1 chrXII:1051902-1052213 ( 74) GCGGGGATCAGCGGTTCGATCCCG 1 chrV:551000-551589 ( 51) GCGGGGATCAGCGGTTCGATCCCG 1 chrV:443031-443384 ( 55) GCGGGGATCAGCGGTTCGATCCCG 1 chrII:197263-197850 ( 28) GCGGGGATCAGCGGTTCGATCCCG 1 chrXVI:856702-857144 ( 68) GGAGAGGTCTCCGGTTCGATTCCG 1 chrXIII:321023-321328 ( 32) GGAGAGGTCTCCGGTTCGATTCCG 1 chrXI:219774-220089 ( 53) GGAGAGGTCTCCGGTTCGATTCCG 1 chrVII:774145-774681 ( 25) GGAGAGGTCTCCGGTTCGATTCCG 1 chrIV:410114-410767 ( 28) GGAGAGGTCTCCGGTTCGATTCCG 1 chrXVI:860163-860731 ( 19) CGTTGGGCCCCCGGTTCGATTCCG 1 chrXVI:572032-572614 ( 33) CGTTGGGCCCCCGGTTCGATTCCG 1 chrXV:226433-226898 ( 6) CGTTGGGCCCCCGGTTCGATTCCG 1 chrXIII:195951-196296 ( 5) CGAGAGGCCCTGGGTTCAATTCCC 1 chrX:396585-396948 ( 20) CGTTGGGCCCCCGGTTCGATTCCG 1 chrVIII:475505-475911 ( 58) GCAAAGGTCCCGAGTTCGATCCTC 1 chrVI:180656-181287 ( 63) CGTTGGGCCCCCGGTTCGATTCCG 1 chrIV:1075220-1075745 ( 50) GCAAAGGTCCCGAGTTCGATCCTC 1 chrXIII:290557-291139 ( 41) CGTGGAGACCGGGGTTCGACTCCC 1 chrV:487061-487610 ( 56) CGTGGAGACCGGGGTTCGACTCCC 1 chrV:354686-355349 ( 5) CGTGGAGACCGGGGTTCGACTCCC 1 chrV:176908-177457 ( 5) CGTGGAGACCGGGGTTCGACTCCC 1 chrIV:1016957-1017497 ( 40) CGTGGAGACCGGGGTTCGACTCCC 1 chrXIV:96013-96530 ( 30) GGTGGGGACACGGGTTCGATTCTC 1 chrVII:779400-779932 ( 38) GGTGGGGACACGGGTTCGATTCTC 1 chrXII:448498-448850 ( 36) CCGGACAACCCCGGTTCGAATCCG 1 chrVIII:133956-134793 ( 35) CCGGACAACCCCGGTTCGAATCCG 1 chrIV:488439-489166 ( 55) GCGAAGATCCCGAGTTCGAACCTC 1 chrIII:168070-168567 ( 43) CCGGACAACCCCGGTTCGAATCCG 1 chrII:326550-327053 ( 51) GCGAAGATCCCGAGTTCGAACCTC 1 chrXIII:131641-132106 ( 12) CAGAAGATTATGGGTTCGACCCCC 1 chrX:374169-374833 ( 65) CAGAAGATTATGGGTTCGACCCCC 1 chrV:435602-436005 ( 9) CATAAGGTTAGGGGTTCGAGCCCC 1 chrIX:299995-300511 ( 35) CATAAGGTTAGGGGTTCGAGCCCC 1 chrIV:1201538-1202112 ( 14) CATAAGGTTAGGGGTTCGAGCCCC 1 chrIV:568687-569246 ( 4) CAGAAGATTATGGGTTCGACCCCC 1 chrIII:151028-151578 ( 41) CATAAGGTTAGGGGTTCGAGCCCC 1 chrII:405648-406216 ( 34) CAGAAGATTATGGGTTCGACCCCC 1 chrXV:663497-664230 ( 9) CAGAACGTCCCCAGTTCGATCCTG 1 chrXIII:420336-420841 ( 60) CAGAACGTCCCCAGTTCGATCCTG 1 chrVII:823344-823726 ( 37) CAGAACGTCCCCAGTTCGATCCTG 1 chrV:438512-438986 ( 41) CAGAACGTCCCCAGTTCGATCCTG 1 chrVII:115329-115725 ( 73) CGAAATGTCAGGGGTTCGAGCCCC 1 chrIV:359357-359975 ( 23) CGAAATGTCAGGGGTTCGAGCCCC 1 chrVIII:358284-358769 ( 12) CTGGAGGTCCTGTGTTCGATCCAC 1 chrVIII:237577-238130 ( 55) CTGGAGGTCCTGTGTTCGATCCAC 1 chrVII:440500-441029 ( 12) CTGGAGGTCCTGTGTTCGATCCAC 1 chrIV:1095142-1095649 ( 35) CTGGAGGTCCTGTGTTCGATCCAC 1 chrIV:1256835-1257291 ( 5) GCATGGGGCCCGGGTTCGATTCCC 1 chrXIII:807953-808553 ( 53) CCGAACAACCCCAGTTCGAATCCG 1 chrVIII:115863-116391 ( 40) GTGGAGATCATCGGTTCAAATCCG 1 chrIV:433660-434891 ( 49) GTGGAGATCATCGGTTCAAATCCG 1 chrII:266187-266690 ( 29) GTGGAGATCATCGGTTCAAATCCG 1 chrXV:976270-976723 ( 14) CTGAAGGTCGAGAGTTCGAACCTC 1 chrX:422734-423235 ( 42) CTGAAGGTCGAGAGTTCGAACCTC 1 chrXIV:632410-632881 ( 44) CGCAAGATCGTGAGTTCAACCCTC 1 chrXII:975765-976184 ( 69) CGCAAGATCGTGAGTTCAACCCTC 1 chrVII:730965-731460 ( 15) CGCAAGATCGTGAGTTCAACCCTC 1 chrIII:127575-127913 ( 62) CGCAAGATCGTGAGTTCAACCCTC 1 chrXII:374201-374680 ( 4) CAGAAGATTCCAGGTTCAAGTCCT 1 chrV:492215-492559 ( 25) CAGAAGATTCCAGGTTCAAGTCCT 1 chrIV:619732-620229 ( 49) CAGAAGATTCCAGGTTCAAGTCCT 1 chrX:415735-416234 ( 7) CGAAGGGTTGCAGGTTCAATTCCT 1 chrXIII:837701-838225 ( 70) CTTGAGATCGGGCGTTCGACTCGC 1 chrXIII:463332-463915 ( 19) GTGCCAGATCGGGGTTCAATTCCC 1 chrXII:426891-427489 ( 30) GTGCCAGATCGGGGTTCAATTCCC 1 chrX:355184-355812 ( 46) GTGCCAGATCGGGGTTCAATTCCC 1 chrX:204550-204983 ( 57) GTGCCAGATCGGGGTTCAATTCCC 1 chrXVI:744088-744589 ( 34) GCAAAGGTCGTTAGTTCAATTCTG 1 chrXVI:435644-436205 ( 29) CTGTTGGTCCTTAGTTCGATCCTG 1 chrXIII:362928-363338 ( 19) CGATGAAACCCTGGTTCGATTCTA 1 chrV:434395-434773 ( 17) CGATGAAACCCTGGTTCGATTCTA 1 chrIII:149721-150150 ( 73) CCTGATGTCCTCGGATCGAAACCG 1 chrIX:335768-336641 ( 74) CTGTAAATCCTGGGTACAAATCGG 1 chrIV:519657-519964 ( 43) TGAAGGATGCGAGGTTCGAACTCG 1 chrII:347407-348008 ( 6) TGAAGGATGCGAGGTTCGAACTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKGRAGRTCCBSGGTTCGATYCCS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 39732 bayes= 10.4594 E= 1.2e-266 -1291 175 66 -354 -64 -2 103 -54 -46 -192 133 -37 46 -192 103 -122 110 -192 54 -454 -96 -92 183 -296 36 -1291 163 -1291 -46 -134 -392 118 -1291 196 -292 -54 -30 154 -75 -222 -354 112 54 -22 -196 78 144 -254 -46 -392 186 -254 -1291 -1291 234 -1291 -454 -1291 -1291 170 -454 -1291 -1291 170 -1291 234 -1291 -1291 -37 -1291 196 -1291 172 -1291 -1291 -1291 -64 -11 -46 66 -454 121 -1291 81 -1291 231 -1291 -354 -254 175 -292 -22 -354 140 103 -254 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKGRAGRTCCBSGGTTCGATYCCS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 77 E= 1.2e-266 0.000000 0.662338 0.311688 0.025974 0.194805 0.194805 0.402597 0.207792 0.220779 0.051948 0.493506 0.233766 0.415584 0.051948 0.402597 0.129870 0.649351 0.051948 0.285714 0.012987 0.155844 0.103896 0.701299 0.038961 0.389610 0.000000 0.610390 0.000000 0.220779 0.077922 0.012987 0.688312 0.000000 0.766234 0.025974 0.207792 0.246753 0.571429 0.116883 0.064935 0.025974 0.428571 0.285714 0.259740 0.077922 0.337662 0.532468 0.051948 0.220779 0.012987 0.714286 0.051948 0.000000 0.000000 1.000000 0.000000 0.012987 0.000000 0.000000 0.987013 0.012987 0.000000 0.000000 0.987013 0.000000 1.000000 0.000000 0.000000 0.233766 0.000000 0.766234 0.000000 1.000000 0.000000 0.000000 0.000000 0.194805 0.181818 0.142857 0.480519 0.012987 0.454545 0.000000 0.532468 0.000000 0.974026 0.000000 0.025974 0.051948 0.662338 0.025974 0.259740 0.025974 0.519481 0.402597 0.051948 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKGRAGRTCCBSGGTTCGATYCCS MEME-1 regular expression -------------------------------------------------------------------------------- [CG][GT][GTA][AG][AG]G[GA][TA][CT][CA][CGT][GC][GA]GTTC[GA]AT[TC]C[CT][CG] -------------------------------------------------------------------------------- Time 255.31 secs. ******************************************************************************** ******************************************************************************** MOTIF TRGYCBAGTGGKTWRAGSS MEME-2 width = 19 sites = 80 llr = 1106 E-value = 7.0e-154 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRGYCBAGTGGKTWRAGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :4:::1a2::::26453:: pos.-specific C :::652:::2::2::2:54 probability G :7a:22:8:6a41:32635 matrix T a::424::a3:66421121 bits 2.3 * * 2.1 * * 1.9 * * 1.6 * * ** * Relative 1.4 * * *** * Entropy 1.2 **** *** * (19.9 bits) 0.9 **** *** ** * 0.7 ***** ****** * *** 0.5 ***** ****** * *** 0.2 ***** ************* 0.0 ------------------- Multilevel TGGCCTAGTGGTTAAAGCG consensus A TGG T G TGCAGC sequence TC G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGYCBAGTGGKTWRAGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------- chrXV:274450-274991 + 10 7.97e-11 GTGTCCCAG TGGCCGAGTGGTTAAGGCG ATGCCCTGCT chrXIII:259030-259438 - 30 7.97e-11 TATGGCAACT TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:167799-168233 - 34 7.97e-11 TATGGCAACT TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrVI:191179-191998 - 50 7.97e-11 TCTGTCCCAG TGGCCGAGTGGTTAAGGCG ATGCCCTGCT chrIV:1305392-1305825 + 79 7.97e-11 TAAGGCAACT TGGCCGAGTGGTTAAGGCG AAA chrIV:1150733-1151163 - 18 7.97e-11 TCAGTCCCAG TGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrIV:437545-438079 + 17 7.97e-11 TAAGGCAACT TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrI:182107-183125 - 12 7.97e-11 TTTGGCAACT TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:592328-592886 - 37 1.16e-09 AATGGGAGTT TGGCCGAGTGGTTTAAGGC GTCAGATTTA chrX:617702-618249 + 1 1.16e-09 . TGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXVI:856702-857144 + 36 3.38e-09 TTCGGGCGTG TGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXIII:321023-321328 - 69 3.38e-09 ATCGGGCGTG TGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXI:219774-220089 + 21 3.38e-09 ATAGGGCGTG TGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXII:962819-963326 - 8 5.00e-09 GACGGAGGGT TGGCCGAGTGGTCTAAGGC GGCAGAC chrX:424266-424711 - 52 5.00e-09 GATGGAGGGT TGGCCGAGTGGTCTAAGGC GGCAGACTTA chrII:9400-9820 + 30 5.00e-09 CGTGGAGGGT TGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXV:353908-354333 - 18 8.67e-09 ACTGCTTCTA TGGCCAAGTTGGTAAGGCG CCACACTAGT chrXIV:104571-105046 + 54 8.67e-09 TCAGCTTCTA TGGCCAAGTTGGTAAGGCG CCACACTAGT chrX:58991-59391 - 6 8.67e-09 GAAGCTTCTA TGGCCAAGTTGGTAAGGCG CCACA chrVIII:115863-116391 - 77 8.67e-09 TTCTA TGGCCAAGTTGGTAAGGCG CCACACTAGT chrXIV:602076-602539 + 62 1.23e-08 AATGGTCTCT TGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIX:183301-183697 - 39 1.23e-08 CCTGGTCTCT TGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrVII:115329-115725 + 18 3.18e-08 TCATCCTTGT TAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXIV:632410-632881 + 11 4.26e-08 AGTGACTCCA TGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXI:74414-74811 + 69 4.26e-08 TTAGACTCCA TGGCCAAGTTGGTTAAGGC GTGCGACTGT chrIII:127575-127913 + 29 4.26e-08 AATGACTCCA TGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXII:605132-605633 - 75 6.45e-08 GCTCGTG TAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrXI:83991-84396 + 72 8.39e-08 TATGGAGGGT TGGCCGAGTGGTCTAATGC GGCAGACTTA chrXVI:581855-582275 + 54 1.08e-07 AGAGCCTTGT TGGCGCAATCGGTAGCGCG TATGACTCTT chrV:435602-436005 - 46 1.08e-07 AGAGCCTTGT TGGCGCAATCGGTAGCGCG TATGACTCTT chrIX:299995-300511 - 72 1.08e-07 ATAGCCTTGT TGGCGCAATCGGTAGCGCG TATGACTCTT chrIII:151028-151578 - 78 1.08e-07 TTGT TGGCGCAATCGGTAGCGCG TATGACTCTT chrXV:663497-664230 - 47 2.41e-07 AGTGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:307975-308448 - 31 2.41e-07 AGTGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrX:378186-378550 + 49 2.41e-07 ATAGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:823344-823726 + 4 2.41e-07 TCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:438512-438986 + 8 2.41e-07 GGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXVI:622158-623100 - 27 2.68e-07 TATGCGGATT TAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXVI:572032-572614 + 3 2.68e-07 AG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:226433-226898 - 41 2.68e-07 TCAGCGCAAG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrXIV:374633-375126 + 47 2.68e-07 TAAGCGGACT TAGCTCAGTTGGGAGAGCG CCAGACTGAA chrX:396585-396948 - 55 2.68e-07 TAAGCGCAAG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrVIII:358284-358769 - 68 2.68e-07 TAAGCGGATT TAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVII:440500-441029 - 68 2.68e-07 TATGCGGATT TAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVI:162021-162401 + 74 2.68e-07 CAAGCGCAAG TGGTTTAGTGGTAAAATCC AACGTTGC chrXV:340159-340625 - 4 2.97e-07 CTGTTCCTCG TGGCCCAATGGTCACGGCG TCT chrXI:490741-491221 + 44 2.97e-07 TTGTTCCTCG TGGCCCAATGGTCACGGCG TCTGGCTACG chrV:492215-492559 - 62 2.97e-07 CTATTCCTCG TGGCCCAATGGTCACGGCG TCTGGCTACG chrXIV:546573-547664 + 33 4.42e-07 ATCGGGCGTG TGGTCTAGTGGTATGATTC TCGCTTTGGG chrXIII:195951-196296 - 72 4.42e-07 CAAGGGCGTG TGGTCTAGTGGTATGATTC TCGCTTTGGG chrXII:92328-92728 + 77 4.42e-07 TAAGGGCGTG TGGTCTAGTGGTATGATTC TCGCT chrI:138967-139360 + 46 4.42e-07 TACGGGCGTG TGGTCTAGTGGTATGATTC TCGCTTTGGG chrVII:205322-205763 + 36 6.36e-07 AGTGGTTGTT TGGCCGAGCGGTCTAAGGC GCCTGATTCA chrIV:1256835-1257291 - 41 6.93e-07 TTAGCGAAAG TGGTTCAGTGGTTAGAATT CATGCTTCCC chrXV:110868-111213 - 18 8.21e-07 CCCGGGCGGT TAGTGTAGTGGTTATCATC CCACCCTTCC chrXIV:96013-96530 - 66 8.21e-07 CATGGGCGGT TAGTGTAGTGGTTATCATC CCACCCTTCC chrVII:779400-779932 + 7 8.21e-07 GGCGGT TAGTGTAGTGGTTATCATC CCACCCTTCC chrXV:287999-288423 + 38 8.91e-07 CTTCTCTCGG TAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXIII:837701-838225 + 22 8.91e-07 TGACTCTCGG TAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXII:448498-448850 - 72 8.91e-07 TCCGGTCCTA TAGTGTAGTGGTTATCACT TTCGGTTTTG chrX:353994-354459 + 75 8.91e-07 TCACTCTCGG TAGCCAAGTTGGTTTAAGG CGCAAGA chrVIII:133956-134793 + 4 8.91e-07 CTA TAGTGTAGTGGTTATCACT TTCGGTTTTG chrVI:167242-167686 + 30 8.91e-07 CGACTCTCGG TAGCCAAGTTGGTTTAAGG CGCAAGACTG chrV:130850-131430 - 38 8.91e-07 AGAGGTTTTA TAGTGTAGTGGTTATCACT TTCGGTTTTG chrIV:802579-803012 - 32 8.91e-07 GTCGGTCCTA TAGTGTAGTGGTTATCACT TTCGGTTTTG chrIV:520749-521162 + 74 8.91e-07 TAGGGTCCTA TAGTGTAGTGGTTATCACT TTCGGTTT chrIII:168070-168567 - 79 8.91e-07 CTA TAGTGTAGTGGTTATCACT TTCGGTTTTG chrII:350595-351061 + 56 8.91e-07 AAGGGTTTTA TAGTGTAGTGGTTATCACT TTCGGTTTTG chrIII:65-1022 - 54 9.65e-07 GGGTAAGCGG TAGTGGAGTTGGATACGGG TAATTGGAGG chrX:422734-423235 + 10 1.86e-06 ATGCTTCAG TAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrX:374169-374833 - 19 2.40e-06 TCTTCCGTGA TAGTTTAATGGTCAGAATG GGCGCTTGTC chrX:355184-355812 + 15 2.40e-06 TCTTCCGTGA TAGTTTAATGGTCAGAATG GGCGCTTGTC chrX:204550-204983 + 26 2.40e-06 AAATCCGTGA TAGTTTAATGGTCAGAATG GGCGCTTGTC chrVII:544409-544884 - 27 2.40e-06 TCTTCCGTGA TAGTTTAATGGTCAGAATG GGCGCTTGTC chrVII:531411-531782 + 71 2.40e-06 ACTTCCGTGA TAGTTTAATGGTCAGAATG GGCGCTTGTC chrIV:568687-569246 + 55 2.40e-06 TCTTCCGTGA TAGTTTAATGGTCAGAATG GGCGCTTGTC chrXVI:75271-76132 + 6 2.72e-06 TCTTG TGGCGGAGTTGGATTTGCT TGACTGTGGC chrXIV:631647-632123 - 57 4.92e-06 ACCGGGCGTG TGGTCTAGAGGTATGATTC TCGCTTAGGG chrIII:123383-123800 - 82 4.92e-06 . TGGTCTAGAGGTATGATTC TCGCTTAGGG chrXIV:6616-6997 - 19 6.22e-06 GGGAGTGGTA TGGTTGAGTGGGGCAGGGT AACGAGTGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGYCBAGTGGKTWRAGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:274450-274991 8e-11 9_[+2]_72 chrXIII:259030-259438 8e-11 29_[-2]_52 chrXII:167799-168233 8e-11 33_[-2]_48 chrVI:191179-191998 8e-11 49_[-2]_32 chrIV:1305392-1305825 8e-11 78_[+2]_3 chrIV:1150733-1151163 8e-11 17_[-2]_64 chrIV:437545-438079 8e-11 16_[+2]_65 chrI:182107-183125 8e-11 11_[-2]_70 chrXII:592328-592886 1.2e-09 36_[-2]_45 chrX:617702-618249 1.2e-09 [+2]_81 chrXVI:856702-857144 3.4e-09 35_[+2]_46 chrXIII:321023-321328 3.4e-09 68_[-2]_13 chrXI:219774-220089 3.4e-09 20_[+2]_61 chrXII:962819-963326 5e-09 7_[-2]_74 chrX:424266-424711 5e-09 51_[-2]_30 chrII:9400-9820 5e-09 29_[+2]_52 chrXV:353908-354333 8.7e-09 17_[-2]_64 chrXIV:104571-105046 8.7e-09 53_[+2]_28 chrX:58991-59391 8.7e-09 5_[-2]_76 chrVIII:115863-116391 8.7e-09 76_[-2]_5 chrXIV:602076-602539 1.2e-08 61_[+2]_20 chrIX:183301-183697 1.2e-08 38_[-2]_43 chrVII:115329-115725 3.2e-08 17_[+2]_64 chrXIV:632410-632881 4.3e-08 10_[+2]_71 chrXI:74414-74811 4.3e-08 68_[+2]_13 chrIII:127575-127913 4.3e-08 28_[+2]_53 chrXII:605132-605633 6.5e-08 74_[-2]_7 chrXI:83991-84396 8.4e-08 71_[+2]_10 chrXVI:581855-582275 1.1e-07 53_[+2]_28 chrV:435602-436005 1.1e-07 45_[-2]_36 chrIX:299995-300511 1.1e-07 71_[-2]_10 chrIII:151028-151578 1.1e-07 77_[-2]_4 chrXV:663497-664230 2.4e-07 46_[-2]_35 chrXI:307975-308448 2.4e-07 30_[-2]_51 chrX:378186-378550 2.4e-07 48_[+2]_33 chrVII:823344-823726 2.4e-07 3_[+2]_78 chrV:438512-438986 2.4e-07 7_[+2]_74 chrXVI:622158-623100 2.7e-07 26_[-2]_55 chrXVI:572032-572614 2.7e-07 2_[+2]_79 chrXV:226433-226898 2.7e-07 40_[-2]_41 chrXIV:374633-375126 2.7e-07 46_[+2]_35 chrX:396585-396948 2.7e-07 54_[-2]_27 chrVIII:358284-358769 2.7e-07 67_[-2]_14 chrVII:440500-441029 2.7e-07 67_[-2]_14 chrVI:162021-162401 2.7e-07 73_[+2]_8 chrXV:340159-340625 3e-07 3_[-2]_78 chrXI:490741-491221 3e-07 43_[+2]_38 chrV:492215-492559 3e-07 61_[-2]_20 chrXIV:546573-547664 4.4e-07 32_[+2]_49 chrXIII:195951-196296 4.4e-07 71_[-2]_10 chrXII:92328-92728 4.4e-07 76_[+2]_5 chrI:138967-139360 4.4e-07 45_[+2]_36 chrVII:205322-205763 6.4e-07 35_[+2]_46 chrIV:1256835-1257291 6.9e-07 40_[-2]_41 chrXV:110868-111213 8.2e-07 17_[-2]_64 chrXIV:96013-96530 8.2e-07 65_[-2]_16 chrVII:779400-779932 8.2e-07 6_[+2]_75 chrXV:287999-288423 8.9e-07 37_[+2]_44 chrXIII:837701-838225 8.9e-07 21_[+2]_60 chrXII:448498-448850 8.9e-07 71_[-2]_10 chrX:353994-354459 8.9e-07 74_[+2]_7 chrVIII:133956-134793 8.9e-07 3_[+2]_78 chrVI:167242-167686 8.9e-07 29_[+2]_52 chrV:130850-131430 8.9e-07 37_[-2]_44 chrIV:802579-803012 8.9e-07 31_[-2]_50 chrIV:520749-521162 8.9e-07 73_[+2]_8 chrIII:168070-168567 8.9e-07 78_[-2]_3 chrII:350595-351061 8.9e-07 55_[+2]_26 chrIII:65-1022 9.6e-07 53_[-2]_28 chrX:422734-423235 1.9e-06 9_[+2]_72 chrX:374169-374833 2.4e-06 18_[-2]_63 chrX:355184-355812 2.4e-06 14_[+2]_67 chrX:204550-204983 2.4e-06 25_[+2]_56 chrVII:544409-544884 2.4e-06 26_[-2]_55 chrVII:531411-531782 2.4e-06 70_[+2]_11 chrIV:568687-569246 2.4e-06 54_[+2]_27 chrXVI:75271-76132 2.7e-06 5_[+2]_76 chrXIV:631647-632123 4.9e-06 56_[-2]_25 chrIII:123383-123800 4.9e-06 81_[-2] chrXIV:6616-6997 6.2e-06 18_[-2]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGYCBAGTGGKTWRAGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRGYCBAGTGGKTWRAGSS width=19 seqs=80 chrXV:274450-274991 ( 10) TGGCCGAGTGGTTAAGGCG 1 chrXIII:259030-259438 ( 30) TGGCCGAGTGGTTAAGGCG 1 chrXII:167799-168233 ( 34) TGGCCGAGTGGTTAAGGCG 1 chrVI:191179-191998 ( 50) TGGCCGAGTGGTTAAGGCG 1 chrIV:1305392-1305825 ( 79) TGGCCGAGTGGTTAAGGCG 1 chrIV:1150733-1151163 ( 18) TGGCCGAGTGGTTAAGGCG 1 chrIV:437545-438079 ( 17) TGGCCGAGTGGTTAAGGCG 1 chrI:182107-183125 ( 12) TGGCCGAGTGGTTAAGGCG 1 chrXII:592328-592886 ( 37) TGGCCGAGTGGTTTAAGGC 1 chrX:617702-618249 ( 1) TGGCCGAGTGGTTTAAGGC 1 chrXVI:856702-857144 ( 36) TGGCGTAGTCGGTAGCGCG 1 chrXIII:321023-321328 ( 69) TGGCGTAGTCGGTAGCGCG 1 chrXI:219774-220089 ( 21) TGGCGTAGTCGGTAGCGCG 1 chrXII:962819-963326 ( 8) TGGCCGAGTGGTCTAAGGC 1 chrX:424266-424711 ( 52) TGGCCGAGTGGTCTAAGGC 1 chrII:9400-9820 ( 30) TGGCCGAGTGGTCTAAGGC 1 chrXV:353908-354333 ( 18) TGGCCAAGTTGGTAAGGCG 1 chrXIV:104571-105046 ( 54) TGGCCAAGTTGGTAAGGCG 1 chrX:58991-59391 ( 6) TGGCCAAGTTGGTAAGGCG 1 chrVIII:115863-116391 ( 77) TGGCCAAGTTGGTAAGGCG 1 chrXIV:602076-602539 ( 62) TGGCCCAGTTGGTTAAGGC 1 chrIX:183301-183697 ( 39) TGGCCCAGTTGGTTAAGGC 1 chrVII:115329-115725 ( 18) TAGCTCAGTTGGTAGAGCG 1 chrXIV:632410-632881 ( 11) TGGCCAAGTTGGTTAAGGC 1 chrXI:74414-74811 ( 69) TGGCCAAGTTGGTTAAGGC 1 chrIII:127575-127913 ( 29) TGGCCAAGTTGGTTAAGGC 1 chrXII:605132-605633 ( 75) TAGCTCAGTGGTTAGAGCT 1 chrXI:83991-84396 ( 72) TGGCCGAGTGGTCTAATGC 1 chrXVI:581855-582275 ( 54) TGGCGCAATCGGTAGCGCG 1 chrV:435602-436005 ( 46) TGGCGCAATCGGTAGCGCG 1 chrIX:299995-300511 ( 72) TGGCGCAATCGGTAGCGCG 1 chrIII:151028-151578 ( 78) TGGCGCAATCGGTAGCGCG 1 chrXV:663497-664230 ( 47) TGGTCTAGTCGGTTATGGC 1 chrXI:307975-308448 ( 31) TGGTCTAGTCGGTTATGGC 1 chrX:378186-378550 ( 49) TGGTCTAGTCGGTTATGGC 1 chrVII:823344-823726 ( 4) TGGTCTAGTCGGTTATGGC 1 chrV:438512-438986 ( 8) TGGTCTAGTCGGTTATGGC 1 chrXVI:622158-623100 ( 27) TAGCTCAGTTGGGAGAGCG 1 chrXVI:572032-572614 ( 3) TGGTTTAGTGGTAAAATCC 1 chrXV:226433-226898 ( 41) TGGTTTAGTGGTAAAATCC 1 chrXIV:374633-375126 ( 47) TAGCTCAGTTGGGAGAGCG 1 chrX:396585-396948 ( 55) TGGTTTAGTGGTAAAATCC 1 chrVIII:358284-358769 ( 68) TAGCTCAGTTGGGAGAGCG 1 chrVII:440500-441029 ( 68) TAGCTCAGTTGGGAGAGCG 1 chrVI:162021-162401 ( 74) TGGTTTAGTGGTAAAATCC 1 chrXV:340159-340625 ( 4) TGGCCCAATGGTCACGGCG 1 chrXI:490741-491221 ( 44) TGGCCCAATGGTCACGGCG 1 chrV:492215-492559 ( 62) TGGCCCAATGGTCACGGCG 1 chrXIV:546573-547664 ( 33) TGGTCTAGTGGTATGATTC 1 chrXIII:195951-196296 ( 72) TGGTCTAGTGGTATGATTC 1 chrXII:92328-92728 ( 77) TGGTCTAGTGGTATGATTC 1 chrI:138967-139360 ( 46) TGGTCTAGTGGTATGATTC 1 chrVII:205322-205763 ( 36) TGGCCGAGCGGTCTAAGGC 1 chrIV:1256835-1257291 ( 41) TGGTTCAGTGGTTAGAATT 1 chrXV:110868-111213 ( 18) TAGTGTAGTGGTTATCATC 1 chrXIV:96013-96530 ( 66) TAGTGTAGTGGTTATCATC 1 chrVII:779400-779932 ( 7) TAGTGTAGTGGTTATCATC 1 chrXV:287999-288423 ( 38) TAGCCAAGTTGGTTTAAGG 1 chrXIII:837701-838225 ( 22) TAGCCAAGTTGGTTTAAGG 1 chrXII:448498-448850 ( 72) TAGTGTAGTGGTTATCACT 1 chrX:353994-354459 ( 75) TAGCCAAGTTGGTTTAAGG 1 chrVIII:133956-134793 ( 4) TAGTGTAGTGGTTATCACT 1 chrVI:167242-167686 ( 30) TAGCCAAGTTGGTTTAAGG 1 chrV:130850-131430 ( 38) TAGTGTAGTGGTTATCACT 1 chrIV:802579-803012 ( 32) TAGTGTAGTGGTTATCACT 1 chrIV:520749-521162 ( 74) TAGTGTAGTGGTTATCACT 1 chrIII:168070-168567 ( 79) TAGTGTAGTGGTTATCACT 1 chrII:350595-351061 ( 56) TAGTGTAGTGGTTATCACT 1 chrIII:65-1022 ( 54) TAGTGGAGTTGGATACGGG 1 chrX:422734-423235 ( 10) TAGCTCAGTAGGAAGAGCG 1 chrX:374169-374833 ( 19) TAGTTTAATGGTCAGAATG 1 chrX:355184-355812 ( 15) TAGTTTAATGGTCAGAATG 1 chrX:204550-204983 ( 26) TAGTTTAATGGTCAGAATG 1 chrVII:544409-544884 ( 27) TAGTTTAATGGTCAGAATG 1 chrVII:531411-531782 ( 71) TAGTTTAATGGTCAGAATG 1 chrIV:568687-569246 ( 55) TAGTTTAATGGTCAGAATG 1 chrXVI:75271-76132 ( 6) TGGCGGAGTTGGATTTGCT 1 chrXIV:631647-632123 ( 57) TGGTCTAGAGGTATGATTC 1 chrIII:123383-123800 ( 82) TGGTCTAGAGGTATGATTC 1 chrXIV:6616-6997 ( 19) TGGTTGAGTGGGGCAGGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGYCBAGTGGKTWRAGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 42312 bayes= 9.98885 E= 7.0e-154 -1297 -1297 -1297 172 21 -1297 172 -1297 -1297 -1297 234 -1297 -1297 155 -1297 49 -1297 141 27 -35 -114 11 19 49 172 -1297 -1297 -1297 -90 -1297 209 -1297 -360 -397 -1297 167 -460 -39 158 -28 -1297 -1297 234 -1297 -1297 -1297 111 92 -90 -17 -166 99 104 -397 -1297 26 53 -239 78 -69 72 19 2 -201 -21 -1297 161 -114 -1297 138 55 -60 -1297 93 131 -114 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGYCBAGTGGKTWRAGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 80 E= 7.0e-154 0.000000 0.000000 0.000000 1.000000 0.350000 0.000000 0.650000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.575000 0.000000 0.425000 0.000000 0.525000 0.237500 0.237500 0.137500 0.212500 0.225000 0.425000 1.000000 0.000000 0.000000 0.000000 0.162500 0.000000 0.837500 0.000000 0.025000 0.012500 0.000000 0.962500 0.012500 0.150000 0.587500 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.425000 0.575000 0.162500 0.175000 0.062500 0.600000 0.625000 0.012500 0.000000 0.362500 0.437500 0.037500 0.337500 0.187500 0.500000 0.225000 0.200000 0.075000 0.262500 0.000000 0.600000 0.137500 0.000000 0.512500 0.287500 0.200000 0.000000 0.375000 0.487500 0.137500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGYCBAGTGGKTWRAGSS MEME-2 regular expression -------------------------------------------------------------------------------- T[GA]G[CT][CGT][TGC]AGT[GT]G[TG]T[AT][AG][ACG][GA][CGT][GC] -------------------------------------------------------------------------------- Time 490.18 secs. ******************************************************************************** ******************************************************************************** MOTIF RNGRTGTATGGRTGT MEME-3 width = 15 sites = 64 llr = 739 E-value = 1.6e-056 ******************************************************************************** -------------------------------------------------------------------------------- Motif RNGRTGTATGGRTGT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3335:::6:::3::2 pos.-specific C 12::::213:::::2 probability G 53641a:2:aa7:81 matrix T 222:9:717:::a15 bits 2.3 * ** 2.1 * ** 1.9 * ** 1.6 * ** Relative 1.4 * ** ** Entropy 1.2 ** ***** (16.6 bits) 0.9 *** ****** 0.7 ***** ****** 0.5 ************ 0.2 * ************* 0.0 --------------- Multilevel GAGATGTATGGGTGT consensus AGAG CGC A C sequence TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNGRTGTATGGRTGT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrXV:639106-639457 + 84 9.25e-09 GGCTGTATGT GTGGTGTACGGGTGT AA chrIV:7-354 - 7 1.95e-08 GGGGTAGTGT GTGGTGTGTGGGTGT GGGTGT chrVII:371167-371522 - 61 4.23e-08 GCGGCGGTGT GAGGTGCATGGGTGC CGGTATTTTT chrXIII:296755-297165 - 56 5.24e-08 AAAAAAGTTC TAGATGTATGGGTGT GCGGGTAATG chrVIII:382897-383374 + 14 6.57e-08 ATTTATTTTC ATGATGTATGGGTGT CTCGGATGTT chrXI:666425-666791 + 52 7.73e-08 GTTAGGGTTG TGGGTGTGTGGGTGT GGTGTGGGTG chrXII:11241-11523 - 6 1.89e-07 GTACTGTGTG GGTGTGTGTGGGTGT GGGTG chrI:81887-82337 + 46 1.89e-07 TCATCTAGCG GAGGTGCACGGATGT ACCAACAGTT chrXVI:404515-404864 - 67 2.27e-07 TTTTTTTAGA ATGATGCATGGGTGT GCAGCCTTTT chrIV:538905-539278 - 64 2.27e-07 AGGATTGAAT GAGGGGTGTGGGTGT GATAATTCAT chrXIII:731903-732465 - 72 2.66e-07 CCACACATGC GCGATGTGCGGATGT ATTATGTCTT chrXVI:279970-280240 - 59 4.10e-07 TCGGAATTGT GAGGTGCACGGATGC GGACTTCTCC chrX:545375-545771 + 32 4.10e-07 ACGTGCGAGT GCGGTGCATGGGTGG CTGTCTTTTC chrV:270365-270635 - 37 4.76e-07 CACATTTAGT GGTATGTATGGGTGA TAAATTTTTT chrXVI:794453-794845 - 56 5.45e-07 CGATAATATA AATATGTATGGGTGT TTGGAGATGT chrIII:163472-163875 + 22 5.45e-07 CAGCCGCGGT TGGGTGCGTGGGTGC GGTAATTTAA chrVIII:505783-506243 + 36 6.22e-07 ATGTCTGGGT GAAATGTATGGATGC ATAATTGTCT chrVI:95426-95918 + 12 6.22e-07 TATACGCAAT CCGGTGTGTGGGTGC ATGACTGATT chrX:265416-265771 + 69 7.11e-07 TGCACAAAAT GCGAGGTGTGGGTGC AATCAAGACT chrVIII:148889-149331 + 20 7.11e-07 TTATAATTCA ATGGTGCATGGGTGA AAATGTATGG chrVIII:125883-126327 - 47 7.11e-07 TGTAAAGATG TAGGTGTACGGATGC ATTAACGTCT chrIV:1359366-1359880 - 23 7.11e-07 GCATGGGTGC GTAATGTACGGATGT TTAATGTCTT chrXV:79713-80158 + 61 8.06e-07 TCACTTATTT AATATGTACGGGTGT TTACATGGAG chrV:305778-306218 - 37 8.06e-07 TGTGGGCTTG TAAATGTGTGGGTGT ACAGTCCCGA chrXII:1028186-1028592 - 59 9.10e-07 CCCATACATT TTGGTGCATGGGTGA TATTTTGTCT chrIX:254219-254585 + 4 9.10e-07 ATT AGAATGTGTGGGTGC GGAAGCTCGC chrXV:1025677-1026089 - 43 1.03e-06 CCAATTACAC GTGATGAATGGGTGT TCAGCATATG chrXIII:224086-224374 + 8 1.03e-06 TTTCAAA AAAATGTATGGATGT AAAATTCAGT chrV:396153-396580 - 63 1.15e-06 TGGGTTCACA AAAGTGTACGGATGT ATACAACAGG chrV:53498-53983 - 29 1.15e-06 CCGAACACCA AATATGTGTGGGTGT CAAACAAAGA chrII:165083-165422 - 55 1.29e-06 GTGCTCTAAC GCGGTGTATGGGTTA GATTCGTAAT chrXV:901423-901712 + 21 1.45e-06 TCGGAAACGT AAAATGTACGGGTGA ACAGTCCCGA chrX:607889-608173 - 15 1.61e-06 TGGGTTAAAT AGGATGTATGGATGG AGGGTTGGCA chrVII:555196-555854 - 35 1.80e-06 CCAAACACTT TTAATGCACGGGTGT AAAAGGGATG chrXVI:302627-302994 - 69 2.00e-06 TGGGTGTTTT AGGATGTCTGGATGT ACAAGTTAGC chrIV:411247-411619 - 52 2.00e-06 CTTTGGGTGC CCGGGGTGTGGGTGT TTGATTTGTT chrII:44976-45349 - 58 2.00e-06 AAACATACAT AGAATGTACGGATGC ATGATTGTCT chrXVI:731654-732569 - 43 2.21e-06 CCAACCATCC TAAAGGTATGGGTGT ACTGACGATG chrXV:968093-968423 + 59 2.21e-06 TCAAAAGCGT GGGGTGCGTGGGCGT GCGCAGCTCG chrVII:277003-277425 - 63 2.69e-06 TCCCATAGAG CGGGTGTATGGGTCT AGCTTAAATA chrIV:1300847-1301367 - 52 2.69e-06 CCAAACATCC ACAGTGCACGGATGT TTGAAGGAAA chrXII:241618-242017 - 40 2.98e-06 GTTTACATTT TATATGTACGGATGT AAAAAGGGAA chrXI:382166-382460 - 42 2.98e-06 TGTGTTGGGT GTGATGTCCGGATGC AACAGCAGCA chrIV:358030-358492 + 36 2.98e-06 TCCTTGTCAG ATAATGTATGGGTGG TGTGTACACC chrXV:866492-867064 + 26 3.59e-06 AAGCATTCTG GGTTTGTATGGGTGT TACACCGGTT chrXI:67711-68069 - 73 3.59e-06 AAAATTTGAT GCGGTGCACGGATTT CAGCACGGGT chrVII:1000313-1000627 - 38 3.59e-06 TCCAAATATG CAGGTGTTTGGGTGC TATCTTAGTG chrXVI:699863-700626 - 66 4.72e-06 AATTTAGTAT GCTGTGCTTGGGTGT TTTGAAGTGG chrXV:253763-254152 + 69 4.72e-06 ATTTATACGC GCGGTGTACGGATTA AAAAAGTTTT chrXV:216278-216683 - 29 4.72e-06 CCTGGGTTGA GGAAGGCGCGGGTGC TCGGATGTTC chrX:89997-90454 - 86 4.72e-06 . GCCATGTATGGGTGA GAATGTTCAG chrXII:818502-819662 + 6 5.61e-06 TTTAT GTAATGTATGGGTTA ACTAATCCTT chrIV:307992-308467 - 25 6.11e-06 GATGTAACAG GAAATGTATGGGTCA CATATTAATA chrXIII:747318-748148 + 24 6.63e-06 CTAACTGGTG GGGCTGTGTGGATGC TGTTTTAAAT chrIX:257346-257741 - 12 9.88e-06 CACATACAAT GTGTTGTTTGGGTGT TTTCCTTTCA chrII:612265-613705 + 5 1.33e-05 TCCA ATGGGGTTTGGGTGA AGTGGTTGTC chrXV:514266-514714 + 86 1.53e-05 CCAGTCACGC CGGATGACTGGGTGT chrIV:321630-321991 - 39 1.53e-05 AAAATAAAGA TTGGTGTACGGAGGT AAAGGTATGA chrIX:98181-100089 + 32 1.75e-05 TTATTATTGA TGAATGAATGGATGC TCATTCAAAA chrXI:618722-619382 + 7 1.87e-05 ATCTGT TAGAGGCACGGATGG AAATAGTATT chrIII:178283-178691 - 53 1.87e-05 GTACTTACGT GCGGTGTACGGACTT AATAAACATC chrVIII:296863-297248 + 28 1.99e-05 ATGTTTCTTC GGTGGGTATGGGTCA CAATTTCGTC chrII:167843-168258 - 35 2.40e-05 ACTGGTGAAA AATATGTCTGGGTTT TAAAACACTG chrII:603664-604876 - 65 2.56e-05 TACAGATGTG TAAATGTACGGATTA AATCGTCGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNGRTGTATGGRTGT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:639106-639457 9.2e-09 83_[+3]_2 chrIV:7-354 1.9e-08 6_[-3]_79 chrVII:371167-371522 4.2e-08 60_[-3]_25 chrXIII:296755-297165 5.2e-08 55_[-3]_30 chrVIII:382897-383374 6.6e-08 13_[+3]_72 chrXI:666425-666791 7.7e-08 51_[+3]_34 chrXII:11241-11523 1.9e-07 5_[-3]_80 chrI:81887-82337 1.9e-07 45_[+3]_40 chrXVI:404515-404864 2.3e-07 66_[-3]_19 chrIV:538905-539278 2.3e-07 63_[-3]_22 chrXIII:731903-732465 2.7e-07 71_[-3]_14 chrXVI:279970-280240 4.1e-07 58_[-3]_27 chrX:545375-545771 4.1e-07 31_[+3]_54 chrV:270365-270635 4.8e-07 36_[-3]_49 chrXVI:794453-794845 5.5e-07 55_[-3]_30 chrIII:163472-163875 5.5e-07 21_[+3]_64 chrVIII:505783-506243 6.2e-07 35_[+3]_50 chrVI:95426-95918 6.2e-07 11_[+3]_74 chrX:265416-265771 7.1e-07 68_[+3]_17 chrVIII:148889-149331 7.1e-07 19_[+3]_66 chrVIII:125883-126327 7.1e-07 46_[-3]_39 chrIV:1359366-1359880 7.1e-07 22_[-3]_63 chrXV:79713-80158 8.1e-07 60_[+3]_25 chrV:305778-306218 8.1e-07 36_[-3]_49 chrXII:1028186-1028592 9.1e-07 58_[-3]_27 chrIX:254219-254585 9.1e-07 3_[+3]_82 chrXV:1025677-1026089 1e-06 42_[-3]_43 chrXIII:224086-224374 1e-06 7_[+3]_78 chrV:396153-396580 1.2e-06 62_[-3]_23 chrV:53498-53983 1.2e-06 28_[-3]_57 chrII:165083-165422 1.3e-06 54_[-3]_31 chrXV:901423-901712 1.4e-06 20_[+3]_65 chrX:607889-608173 1.6e-06 14_[-3]_71 chrVII:555196-555854 1.8e-06 34_[-3]_51 chrXVI:302627-302994 2e-06 68_[-3]_17 chrIV:411247-411619 2e-06 51_[-3]_34 chrII:44976-45349 2e-06 57_[-3]_28 chrXVI:731654-732569 2.2e-06 42_[-3]_43 chrXV:968093-968423 2.2e-06 58_[+3]_27 chrVII:277003-277425 2.7e-06 62_[-3]_23 chrIV:1300847-1301367 2.7e-06 51_[-3]_34 chrXII:241618-242017 3e-06 39_[-3]_46 chrXI:382166-382460 3e-06 41_[-3]_44 chrIV:358030-358492 3e-06 35_[+3]_50 chrXV:866492-867064 3.6e-06 25_[+3]_60 chrXI:67711-68069 3.6e-06 72_[-3]_13 chrVII:1000313-1000627 3.6e-06 37_[-3]_48 chrXVI:699863-700626 4.7e-06 65_[-3]_20 chrXV:253763-254152 4.7e-06 68_[+3]_17 chrXV:216278-216683 4.7e-06 28_[-3]_57 chrX:89997-90454 4.7e-06 85_[-3] chrXII:818502-819662 5.6e-06 5_[+3]_80 chrIV:307992-308467 6.1e-06 24_[-3]_61 chrXIII:747318-748148 6.6e-06 23_[+3]_62 chrIX:257346-257741 9.9e-06 11_[-3]_74 chrII:612265-613705 1.3e-05 4_[+3]_81 chrXV:514266-514714 1.5e-05 85_[+3] chrIV:321630-321991 1.5e-05 38_[-3]_47 chrIX:98181-100089 1.7e-05 31_[+3]_54 chrXI:618722-619382 1.9e-05 6_[+3]_79 chrIII:178283-178691 1.9e-05 52_[-3]_33 chrVIII:296863-297248 2e-05 27_[+3]_58 chrII:167843-168258 2.4e-05 34_[-3]_51 chrII:603664-604876 2.6e-05 64_[-3]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNGRTGTATGGRTGT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RNGRTGTATGGRTGT width=15 seqs=64 chrXV:639106-639457 ( 84) GTGGTGTACGGGTGT 1 chrIV:7-354 ( 7) GTGGTGTGTGGGTGT 1 chrVII:371167-371522 ( 61) GAGGTGCATGGGTGC 1 chrXIII:296755-297165 ( 56) TAGATGTATGGGTGT 1 chrVIII:382897-383374 ( 14) ATGATGTATGGGTGT 1 chrXI:666425-666791 ( 52) TGGGTGTGTGGGTGT 1 chrXII:11241-11523 ( 6) GGTGTGTGTGGGTGT 1 chrI:81887-82337 ( 46) GAGGTGCACGGATGT 1 chrXVI:404515-404864 ( 67) ATGATGCATGGGTGT 1 chrIV:538905-539278 ( 64) GAGGGGTGTGGGTGT 1 chrXIII:731903-732465 ( 72) GCGATGTGCGGATGT 1 chrXVI:279970-280240 ( 59) GAGGTGCACGGATGC 1 chrX:545375-545771 ( 32) GCGGTGCATGGGTGG 1 chrV:270365-270635 ( 37) GGTATGTATGGGTGA 1 chrXVI:794453-794845 ( 56) AATATGTATGGGTGT 1 chrIII:163472-163875 ( 22) TGGGTGCGTGGGTGC 1 chrVIII:505783-506243 ( 36) GAAATGTATGGATGC 1 chrVI:95426-95918 ( 12) CCGGTGTGTGGGTGC 1 chrX:265416-265771 ( 69) GCGAGGTGTGGGTGC 1 chrVIII:148889-149331 ( 20) ATGGTGCATGGGTGA 1 chrVIII:125883-126327 ( 47) TAGGTGTACGGATGC 1 chrIV:1359366-1359880 ( 23) GTAATGTACGGATGT 1 chrXV:79713-80158 ( 61) AATATGTACGGGTGT 1 chrV:305778-306218 ( 37) TAAATGTGTGGGTGT 1 chrXII:1028186-1028592 ( 59) TTGGTGCATGGGTGA 1 chrIX:254219-254585 ( 4) AGAATGTGTGGGTGC 1 chrXV:1025677-1026089 ( 43) GTGATGAATGGGTGT 1 chrXIII:224086-224374 ( 8) AAAATGTATGGATGT 1 chrV:396153-396580 ( 63) AAAGTGTACGGATGT 1 chrV:53498-53983 ( 29) AATATGTGTGGGTGT 1 chrII:165083-165422 ( 55) GCGGTGTATGGGTTA 1 chrXV:901423-901712 ( 21) AAAATGTACGGGTGA 1 chrX:607889-608173 ( 15) AGGATGTATGGATGG 1 chrVII:555196-555854 ( 35) TTAATGCACGGGTGT 1 chrXVI:302627-302994 ( 69) AGGATGTCTGGATGT 1 chrIV:411247-411619 ( 52) CCGGGGTGTGGGTGT 1 chrII:44976-45349 ( 58) AGAATGTACGGATGC 1 chrXVI:731654-732569 ( 43) TAAAGGTATGGGTGT 1 chrXV:968093-968423 ( 59) GGGGTGCGTGGGCGT 1 chrVII:277003-277425 ( 63) CGGGTGTATGGGTCT 1 chrIV:1300847-1301367 ( 52) ACAGTGCACGGATGT 1 chrXII:241618-242017 ( 40) TATATGTACGGATGT 1 chrXI:382166-382460 ( 42) GTGATGTCCGGATGC 1 chrIV:358030-358492 ( 36) ATAATGTATGGGTGG 1 chrXV:866492-867064 ( 26) GGTTTGTATGGGTGT 1 chrXI:67711-68069 ( 73) GCGGTGCACGGATTT 1 chrVII:1000313-1000627 ( 38) CAGGTGTTTGGGTGC 1 chrXVI:699863-700626 ( 66) GCTGTGCTTGGGTGT 1 chrXV:253763-254152 ( 69) GCGGTGTACGGATTA 1 chrXV:216278-216683 ( 29) GGAAGGCGCGGGTGC 1 chrX:89997-90454 ( 86) GCCATGTATGGGTGA 1 chrXII:818502-819662 ( 6) GTAATGTATGGGTTA 1 chrIV:307992-308467 ( 25) GAAATGTATGGGTCA 1 chrXIII:747318-748148 ( 24) GGGCTGTGTGGATGC 1 chrIX:257346-257741 ( 12) GTGTTGTTTGGGTGT 1 chrII:612265-613705 ( 5) ATGGGGTTTGGGTGA 1 chrXV:514266-514714 ( 86) CGGATGACTGGGTGT 1 chrIV:321630-321991 ( 39) TTGGTGTACGGAGGT 1 chrIX:98181-100089 ( 32) TGAATGAATGGATGC 1 chrXI:618722-619382 ( 7) TAGAGGCACGGATGG 1 chrIII:178283-178691 ( 53) GCGGTGTACGGACTT 1 chrVIII:296863-297248 ( 28) GGTGGGTATGGGTCA 1 chrII:167843-168258 ( 35) AATATGTCTGGGTTT 1 chrII:603664-604876 ( 65) TAAATGTACGGATTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNGRTGTATGGRTGT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 44376 bayes= 10.1732 E= 1.6e-056 -19 -133 120 -58 11 -7 34 -37 -19 -365 151 -96 77 -365 115 -328 -1264 -1264 -66 153 -1264 -1264 234 -1264 -269 25 -1264 125 108 -166 25 -228 -1264 74 -1264 115 -1264 -1264 234 -1264 -1264 -1264 234 -1264 18 -1264 174 -1264 -1264 -265 -365 165 -1264 -207 210 -147 -69 15 -166 81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNGRTGTATGGRTGT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 64 E= 1.6e-056 0.265625 0.078125 0.453125 0.203125 0.328125 0.187500 0.250000 0.234375 0.265625 0.015625 0.562500 0.156250 0.515625 0.015625 0.437500 0.031250 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 0.046875 0.234375 0.000000 0.718750 0.640625 0.062500 0.234375 0.062500 0.000000 0.328125 0.000000 0.671875 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.343750 0.000000 0.656250 0.000000 0.000000 0.031250 0.015625 0.953125 0.000000 0.046875 0.843750 0.109375 0.187500 0.218750 0.062500 0.531250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNGRTGTATGGRTGT MEME-3 regular expression -------------------------------------------------------------------------------- [GAT][AGT][GA][AG]TG[TC][AG][TC]GG[GA]TG[TC] -------------------------------------------------------------------------------- Time 716.61 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71841-73265 3.28e-01 100 chrI:81887-82337 9.66e-05 45_[+3(1.89e-07)]_40 chrI:138967-139360 2.47e-04 45_[+2(4.42e-07)]_36 chrI:166173-166604 3.04e-01 100 chrI:180937-181522 7.32e-02 41_[+1(8.11e-05)]_35 chrI:182107-183125 1.35e-06 11_[-2(7.97e-11)]_70 chrII:9400-9820 6.17e-07 29_[+2(5.00e-09)]_24_[+1(7.59e-05)]_\ 4 chrII:35800-36587 8.08e-01 100 chrII:44976-45349 5.21e-03 57_[-3(2.00e-06)]_1_[+3(6.11e-06)]_\ 12 chrII:60768-61985 8.03e-01 100 chrII:89633-90247 1.19e-01 100 chrII:165083-165422 3.51e-03 54_[-3(1.29e-06)]_31 chrII:167843-168258 2.98e-02 34_[-3(2.40e-05)]_51 chrII:168536-169517 4.91e-01 100 chrII:180515-181719 4.13e-01 100 chrII:197263-197850 3.70e-07 27_[+1(4.23e-11)]_49 chrII:226970-227357 1.41e-01 100 chrII:266187-266690 8.79e-06 28_[+1(2.71e-09)]_48 chrII:326550-327053 1.77e-06 50_[-1(2.63e-10)]_26 chrII:332077-332751 8.43e-01 100 chrII:347407-348008 5.47e-03 5_[-1(1.86e-06)]_71 chrII:350595-351061 6.13e-06 55_[+2(8.91e-07)]_8_[-3(9.31e-05)]_\ 3 chrII:405648-406216 1.30e-06 33_[+1(4.36e-10)]_43 chrII:415506-416073 5.93e-01 100 chrII:476859-477757 6.62e-01 100 chrII:544542-545131 3.26e-01 100 chrII:545361-545709 1.97e-01 100 chrII:592866-593456 9.77e-01 100 chrII:603664-604876 9.58e-03 64_[-3(2.56e-05)]_21 chrII:605070-606294 5.47e-01 100 chrII:612265-613705 2.47e-02 4_[+3(1.33e-05)]_81 chrII:642857-643320 9.35e-01 100 chrII:644913-645441 2.24e-01 100 chrIII:65-1022 3.50e-03 53_[-2(9.65e-07)]_28 chrIII:58747-59826 1.89e-02 100 chrIII:82376-83438 9.06e-01 100 chrIII:90865-91144 8.79e-01 100 chrIII:107117-107798 1.00e+00 100 chrIII:123383-123800 9.83e-14 45_[-1(1.09e-14)]_12_[-2(4.92e-06)] chrIII:127575-127913 5.11e-09 28_[+2(4.26e-08)]_14_[+1(2.60e-08)]_\ 15 chrIII:142618-143030 5.14e-01 100 chrIII:149721-150150 1.49e-03 72_[+1(7.42e-07)]_4 chrIII:151028-151578 2.12e-10 40_[-1(4.36e-10)]_13_[-2(1.08e-07)]_\ 4 chrIII:163472-163875 1.81e-03 21_[+3(5.45e-07)]_15_[+3(3.04e-05)]_\ 34 chrIII:164089-164277 2.79e-01 100 chrIII:168070-168567 4.51e-11 42_[-1(2.63e-10)]_12_[-2(8.91e-07)]_\ 3 chrIII:178283-178691 3.66e-02 52_[-3(1.87e-05)]_33 chrIII:227751-228418 8.60e-01 100 chrIII:295291-296013 9.38e-01 100 chrIII:315644-316595 1.26e-01 100 chrIV:7-354 4.00e-05 6_[-3(1.95e-08)]_79 chrIV:83428-84024 9.35e-01 100 chrIV:117144-117752 1.44e-01 100 chrIV:125338-126290 7.31e-01 100 chrIV:129822-131027 8.20e-01 100 chrIV:216609-217543 1.35e-01 100 chrIV:221758-222372 9.65e-01 100 chrIV:229460-230475 7.37e-01 100 chrIV:307992-308467 8.71e-03 24_[-3(6.11e-06)]_61 chrIV:308770-309417 9.27e-01 100 chrIV:321630-321991 4.59e-02 38_[-3(1.53e-05)]_11_[-3(4.20e-05)]_\ 21 chrIV:340537-341658 4.43e-01 100 chrIV:355649-356727 5.22e-01 100 chrIV:358030-358492 1.28e-02 35_[+3(2.98e-06)]_50 chrIV:359357-359975 2.87e-06 22_[+1(7.09e-10)]_54 chrIV:410114-410767 1.41e-06 27_[+1(8.84e-11)]_49 chrIV:411247-411619 2.84e-03 51_[-3(2.00e-06)]_13_[-3(3.79e-05)]_\ 6 chrIV:433660-434891 1.36e-05 48_[-1(2.71e-09)]_28 chrIV:437545-438079 5.56e-08 16_[+2(7.97e-11)]_65 chrIV:465170-465591 1.70e-01 100 chrIV:488439-489166 3.48e-06 54_[-1(2.63e-10)]_22 chrIV:490259-492325 3.65e-01 100 chrIV:519657-519964 4.97e-03 42_[-1(1.86e-06)]_34 chrIV:520749-521162 1.03e-03 73_[+2(8.91e-07)]_8 chrIV:538905-539278 3.28e-04 63_[-3(2.27e-07)]_22 chrIV:568687-569246 3.08e-09 3_[+1(4.36e-10)]_27_[+2(2.40e-06)]_\ 27 chrIV:569430-569620 1.23e-01 100 chrIV:578879-580449 8.18e-01 100 chrIV:619732-620229 4.77e-04 48_[-1(5.00e-08)]_28 chrIV:644794-645381 8.56e-01 100 chrIV:667701-668216 9.12e-01 100 chrIV:758767-759649 1.29e-01 100 chrIV:769725-770006 2.42e-02 30_[-3(9.67e-05)]_55 chrIV:802579-803012 6.13e-06 8_[+3(9.31e-05)]_8_[-2(8.91e-07)]_\ 50 chrIV:835774-836340 9.50e-01 100 chrIV:884257-884607 2.97e-01 100 chrIV:946124-946780 9.93e-01 100 chrIV:980713-981223 1.13e-01 100 chrIV:992687-993217 6.31e-01 100 chrIV:1013429-1014032 9.97e-01 100 chrIV:1016957-1017497 4.34e-07 39_[-1(1.35e-10)]_37 chrIV:1075220-1075745 1.66e-06 49_[-1(1.17e-10)]_27 chrIV:1095142-1095649 2.90e-07 34_[-1(1.58e-09)]_42 chrIV:1150733-1151163 1.10e-06 17_[-2(7.97e-11)]_64 chrIV:1175425-1176436 9.63e-01 100 chrIV:1201538-1202112 1.05e-06 13_[+1(4.36e-10)]_63 chrIV:1236608-1237948 7.64e-01 100 chrIV:1256835-1257291 1.41e-10 4_[-1(1.97e-09)]_12_[-2(6.93e-07)]_\ 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53_[+2(8.67e-09)]_28 chrXIV:217362-218064 1.43e-01 100 chrXIV:240460-242158 7.35e-01 100 chrXIV:302749-303663 3.69e-01 100 chrXIV:330784-331225 4.35e-01 100 chrXIV:374633-375126 5.97e-04 46_[+2(2.68e-07)]_35 chrXIV:442758-444001 7.29e-01 100 chrXIV:444252-445096 1.00e+00 100 chrXIV:495182-495759 5.31e-01 100 chrXIV:499250-500714 5.56e-01 100 chrXIV:518064-519139 3.14e-02 100 chrXIV:525070-525327 6.32e-01 100 chrXIV:546573-547664 3.37e-04 32_[+2(4.42e-07)]_49 chrXIV:560400-560869 7.73e-01 100 chrXIV:568052-569113 9.35e-01 100 chrXIV:569453-570170 1.20e-01 100 chrXIV:602076-602539 6.99e-05 61_[+2(1.23e-08)]_20 chrXIV:603080-604261 6.00e-01 100 chrXIV:631647-632123 9.83e-14 20_[-1(1.09e-14)]_12_[-2(4.92e-06)]_\ 25 chrXIV:632410-632881 5.11e-09 10_[+2(4.26e-08)]_14_[+1(2.60e-08)]_\ 33 chrXIV:721992-722944 3.42e-01 100 chrXIV:725822-726337 9.33e-01 100 chrXIV:783481-784326 2.42e-01 100 chrXV:79713-80158 1.64e-03 38_[+3(2.26e-05)]_7_[+3(8.06e-07)]_\ 25 chrXV:80558-81147 7.60e-01 100 chrXV:92734-93988 5.21e-01 100 chrXV:94333-94802 1.22e-01 100 chrXV:109531-110052 3.46e-01 100 chrXV:110868-111213 2.86e-03 17_[-2(8.21e-07)]_64 chrXV:113505-113883 8.29e-01 100 chrXV:159151-160140 1.80e-02 68_[+2(4.06e-05)]_13 chrXV:161092-161755 6.27e-01 100 chrXV:167950-168899 6.72e-01 100 chrXV:216278-216683 1.01e-02 28_[-3(4.72e-06)]_1_[-3(2.12e-05)]_\ 41 chrXV:226433-226898 2.59e-10 5_[-1(1.17e-10)]_11_[-2(2.68e-07)]_\ 41 chrXV:228111-228742 4.76e-01 100 chrXV:253763-254152 5.00e-03 39_[-3(2.26e-05)]_14_[+3(4.72e-06)]_\ 17 chrXV:274450-274991 5.23e-08 9_[+2(7.97e-11)]_72 chrXV:281981-282881 8.66e-01 100 chrXV:287999-288423 2.35e-03 37_[+2(8.91e-07)]_44 chrXV:300890-301704 2.29e-01 100 chrXV:340159-340625 9.79e-04 3_[-2(2.97e-07)]_78 chrXV:353908-354333 8.83e-05 17_[-2(8.67e-09)]_64 chrXV:424402-424661 3.49e-01 100 chrXV:438460-439057 2.12e-01 100 chrXV:439595-439773 9.16e-01 100 chrXV:444684-447156 4.04e-01 100 chrXV:462340-462586 3.61e-01 100 chrXV:464281-464975 1.00e+00 100 chrXV:487441-487843 7.53e-01 100 chrXV:504970-505511 7.91e-01 100 chrXV:514266-514714 8.47e-03 85_[+3(1.53e-05)] chrXV:571731-572891 2.11e-01 100 chrXV:585399-586303 2.21e-01 100 chrXV:592080-592922 4.47e-01 100 chrXV:594305-594644 8.66e-01 100 chrXV:639106-639457 3.47e-05 83_[+3(9.25e-09)]_2 chrXV:663497-664230 1.12e-09 8_[-1(5.58e-10)]_14_[-2(2.41e-07)]_\ 35 chrXV:678175-679204 8.41e-01 100 chrXV:710127-710532 1.00e+00 100 chrXV:722924-724728 1.49e-02 75_[-1(3.98e-05)]_1 chrXV:779332-780976 2.12e-02 100 chrXV:853879-854758 9.60e-01 100 chrXV:866492-867064 2.52e-03 9_[-3(1.33e-05)]_1_[+3(3.59e-06)]_\ 60 chrXV:901423-901712 4.81e-03 20_[+3(1.45e-06)]_65 chrXV:925180-925424 4.60e-01 100 chrXV:968093-968423 4.65e-04 58_[+3(2.21e-06)]_27 chrXV:976270-976723 4.18e-05 13_[+1(1.18e-08)]_63 chrXV:978799-979179 4.34e-01 100 chrXV:980124-980993 6.55e-01 100 chrXV:1003976-1004399 6.60e-01 100 chrXV:1025677-1026089 2.71e-03 42_[-3(1.03e-06)]_43 chrXV:1028196-1029425 7.65e-01 100 chrXVI:55871-56425 6.52e-01 100 chrXVI:75271-76132 1.02e-02 5_[+2(2.72e-06)]_76 chrXVI:76323-77119 3.92e-01 100 chrXVI:135153-135852 7.65e-01 100 chrXVI:172193-173864 4.74e-01 100 chrXVI:188335-189351 2.04e-01 100 chrXVI:202888-203272 7.74e-01 100 chrXVI:210065-210483 6.13e-01 100 chrXVI:279970-280240 4.01e-04 58_[-3(4.10e-07)]_27 chrXVI:280595-281218 2.87e-01 100 chrXVI:281605-282320 5.38e-01 100 chrXVI:302627-302994 1.23e-02 68_[-3(2.00e-06)]_17 chrXVI:303239-304130 1.53e-01 100 chrXVI:338765-339149 3.44e-01 100 chrXVI:339927-340786 2.63e-01 100 chrXVI:378659-380582 5.18e-01 100 chrXVI:404515-404864 8.90e-04 66_[-3(2.27e-07)]_19 chrXVI:405083-406655 7.14e-01 100 chrXVI:406901-407796 1.76e-01 30_[-1(8.95e-05)]_46 chrXVI:432575-434114 2.61e-01 100 chrXVI:435644-436205 4.43e-04 28_[-1(1.42e-07)]_48 chrXVI:519346-520537 1.24e-01 100 chrXVI:559973-560292 8.63e-01 100 chrXVI:572032-572614 8.74e-11 2_[+2(2.68e-07)]_11_[+1(1.17e-10)]_\ 44 chrXVI:581855-582275 6.68e-05 53_[+2(1.08e-07)]_28 chrXVI:622158-623100 2.05e-04 26_[-2(2.68e-07)]_55 chrXVI:627282-628333 4.12e-01 100 chrXVI:689377-689873 1.77e-01 100 chrXVI:699863-700626 1.36e-02 36_[-3(7.65e-05)]_14_[-3(4.72e-06)]_\ 20 chrXVI:731654-732569 2.12e-03 42_[-3(2.21e-06)]_43 chrXVI:744088-744589 1.08e-04 33_[+1(1.42e-07)]_43 chrXVI:768763-769507 3.88e-01 100 chrXVI:775643-776083 9.97e-01 100 chrXVI:794453-794845 1.79e-03 37_[-3(2.00e-06)]_3_[-3(5.45e-07)]_\ 30 chrXVI:810582-811737 6.70e-01 100 chrXVI:819333-820310 2.43e-01 100 chrXVI:856702-857144 1.22e-12 35_[+2(3.38e-09)]_13_[+1(8.84e-11)]_\ 9 chrXVI:860163-860731 3.66e-07 18_[+1(1.17e-10)]_58 chrXVI:879403-880596 8.36e-01 100 chrXVI:918496-920117 3.32e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************