# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/seqs-shuffled
#   positives: 516 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/seqs-centered (Sun Jan 19 06:58:49 PST 2020)
#   negatives: 516 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--CAT8/seqs-shuffled (Sun Jan 19 06:58:49 PST 2020)
#        host: kali.stanford.edu
#        when: Sun Jan 19 07:10:50 PST 2020

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.296 C 0.201 G 0.201 T 0.303


MOTIF GGWTCGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GGWTCGA    TCGAWCC         84          5   2.7e-021   8.2e-017
#          GGTTCGA    TCGAACC         67          2   4.7e-019   1.4e-014
#          GGATCGA    TCGATCC         22          3   6.6e-005   2.0e+000

letter-probability matrix: alength= 4 w= 7 nsites= 84 E= 8.2e-017
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.250000 0.000000 0.000000 0.750000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AARAAAK DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AARAAAK    MTTTYTT        191         96   2.4e-011   7.3e-007
#          AAAAAAT    ATTTTTT        103         52   5.7e-006   1.7e-001
#          AAAAAAG    CTTTTTT         65         32   2.9e-004   8.8e+000
#          AAGAAAT    ATTTCTT         30         10   9.1e-004   2.8e+001
#          AAGAAAG    CTTTCTT         26         11   9.0e-003   2.7e+002

letter-probability matrix: alength= 4 w= 7 nsites= 233 E= 7.3e-007
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.772532 0.000000 0.227468 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.381974 0.618026


MOTIF AGTGGTW DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AGTGGTW    WACCACT         62         10   3.3e-011   1.0e-006
#          AGTGGTT    AACCACT         41          5   1.2e-008   3.5e-004
#          AGTGGTA    TACCACT         26          5   7.8e-005   2.3e+000

letter-probability matrix: alength= 4 w= 7 nsites= 69 E= 1.0e-006
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.376812 0.000000 0.000000 0.623188


MOTIF CRCCCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CRCCCA     TGGGYG         79         25   1.1e-008   3.3e-004
#           CACCCA     TGGGTG         51         13   4.5e-007   1.3e-002
#           CGCCCA     TGGGCG         31         12   2.3e-003   6.7e+001

letter-probability matrix: alength= 4 w= 6 nsites= 96 E= 3.3e-004
0.000000 1.000000 0.000000 0.000000
0.666667 0.000000 0.333333 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CGCCTTA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CGCCTTA    TAAGGCG         23          1   1.2e-006   3.5e-002
#          CGCCTTA    TAAGGCG         23          1   1.2e-006   3.5e-002

letter-probability matrix: alength= 4 w= 7 nsites= 23 E= 3.5e-002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 20.94 seconds