******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--AFT1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:326535-327123 1.0000 100 chrVIII:125894-127504 1.0000 100 chrXIV:585424-586386 1.0000 100 chrVI:222732-224153 1.0000 100 chrXI:259137-259881 1.0000 100 chrI:180937-181464 1.0000 100 chrIV:1256858-1257306 1.0000 100 chrXVI:819305-819848 1.0000 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1.0000 100 chrVII:706912-707185 1.0000 100 chrII:592288-593450 1.0000 100 chrVIII:382683-383366 1.0000 100 chrVII:787345-788720 1.0000 100 chrV:434391-435209 1.0000 100 chrXII:515138-516881 1.0000 100 chrXII:734550-734985 1.0000 100 chrXII:713158-713685 1.0000 100 chrXIV:442792-445019 1.0000 100 chrIV:541239-541896 1.0000 100 chrIX:300009-300524 1.0000 100 chrXIII:807980-808554 1.0000 100 chrIV:216591-216967 1.0000 100 chrXIII:420328-420870 1.0000 100 chrXIV:783476-784323 1.0000 100 chrXV:340146-340613 1.0000 100 chrXII:592334-592986 1.0000 100 chrVII:794167-794512 1.0000 100 chrXIV:518727-519140 1.0000 100 chrXI:517785-518125 1.0000 100 chrIV:1300377-1301349 1.0000 100 chrVIII:133941-134772 1.0000 100 chrX:422384-422484 1.0000 100 chrVI:136585-137702 1.0000 100 chrVI:75212-75904 1.0000 100 chrIV:1236464-1238505 1.0000 100 chrVII:856695-857670 1.0000 100 chrVII:516354-518967 1.0000 100 chrXV:925214-925407 1.0000 100 chrXII:874890-875618 1.0000 100 chrXVI:280588-282960 1.0000 100 chrX:607895-607995 1.0000 100 chrXVI:731617-732294 1.0000 100 chrXI:99737-100002 1.0000 100 chrXIV:721976-723174 1.0000 100 chrIV:14-330 1.0000 100 chrIV:1150736-1151171 1.0000 100 chrVI:100982-102133 1.0000 100 chrIII:127581-127890 1.0000 100 chrIV:765092-765610 1.0000 100 chrXIV:546538-547360 1.0000 100 chrXVI:856722-857131 1.0000 100 chrV:99864-100338 1.0000 100 chrIV:1355740-1356084 1.0000 100 chrVIII:115936-116416 1.0000 100 chrIX:394821-395192 1.0000 100 chrIV:568657-569288 1.0000 100 chrI:81830-82315 1.0000 100 chrXII:1017835-1019557 1.0000 100 chrXV:228073-228565 1.0000 100 chrVIII:148931-149282 1.0000 100 chrXIII:362940-363410 1.0000 100 chrV:176879-177402 1.0000 100 chrV:26854-28379 1.0000 100 chrXVI:642256-643366 1.0000 100 chrII:197155-197837 1.0000 100 chrVII:771628-772221 1.0000 100 chrXII:448470-448848 1.0000 100 chrIX:197337-197811 1.0000 100 chrVIII:505806-506213 1.0000 100 chrX:73385-73485 1.0000 100 chrIV:117159-118188 1.0000 100 chrV:249757-251043 1.0000 100 chrIV:116794-117000 1.0000 100 chrVII:726193-728074 1.0000 100 chrIX:316780-318216 1.0000 100 chrXIII:549989-553152 1.0000 100 chrVIII:10327-10989 1.0000 100 chrXIV:602100-602564 1.0000 100 chrVII:531306-532321 1.0000 100 chrVIII:34404-36115 1.0000 100 chrXVI:55846-56427 1.0000 100 chrIV:220967-222364 1.0000 100 chrVII:541711-542177 1.0000 100 chrX:453229-453329 1.0000 100 chrV:67115-68916 1.0000 100 chrXV:899824-901203 1.0000 100 chrIV:308014-310180 1.0000 100 chrIV:359312-359781 1.0000 100 chrXIV:569686-570175 1.0000 100 chrVII:483395-483676 1.0000 100 chrX:204544-204644 1.0000 100 chrXV:678575-679158 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--AFT1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--AFT1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--AFT1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.300 C 0.200 G 0.200 T 0.300 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--AFT1/background): A 0.308 C 0.192 G 0.192 T 0.308 ******************************************************************************** ******************************************************************************** MOTIF NMDMBSGGRDTCGAACCSVKG MEME-1 width = 21 sites = 103 llr = 1602 E-value = 2.9e-288 ******************************************************************************** -------------------------------------------------------------------------------- Motif NMDMBSGGRDTCGAACCSVKG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3333:13:64:::aa::13:2 pos.-specific C 35:553:::1:8:::a7532: probability G 2142356a42::a::::3458 matrix T 213:2::::2a2::::31:3: bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * * **** * Relative 1.4 * ****** * Entropy 1.2 * ****** * (22.4 bits) 1.0 **** ******* * 0.7 **** ******** * 0.5 ****** *********** 0.2 ********* *********** 0.0 --------------------- Multilevel CCGCCGGGAATCGAACCCGGG consensus AAAAGCA GT TGAT sequence TGT G CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NMDMBSGGRDTCGAACCSVKG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIII:123352-123801 + 56 2.66e-11 AATGTGGGGC GAGCCGGGACTCGAACCCGGG ACCTCCCGCA chrIV:83433-83802 - 26 6.75e-11 AAACTTGCGC AAGCCCGGAATCGAACCGGGG GCCCAACGAT chrXV:226426-226901 + 3 6.75e-11 GC AAGCCCGGAATCGAACCGGGG GCCCAACGAT chrX:531569-531669 - 35 6.75e-11 GAAACTGCGC AAGCCCGGAATCGAACCGGGG GCCCAACGAT chrVII:845450-846034 - 2 6.75e-11 AACATTGCGC AAGCCCGGAATCGAACCGGGG G chrXIII:183793-183961 + 76 6.75e-11 AAATATGCGC AAGCCCGGAATCGAACCGGGG GCCC chrIV:1016940-1017509 + 38 1.04e-10 AGAAACTCCG AAGCGGGGAGTCGAACCCCGG TCTCCACGGT chrXIII:807980-808554 + 34 4.11e-10 AGGGAAGGTC CCACCCGGATTCGAACTGGGG TTGTTCGGAT chrXII:448470-448848 + 46 6.97e-10 AAAGAAGGTC CTACCCGGATTCGAACCGGGG TTGTCCGGAT chrVIII:133941-134772 - 61 6.97e-10 AAAAAAGGTC CTACCCGGATTCGAACCGGGG TTGTCCGGAT chrIV:644926-645378 + 56 6.97e-10 AAAAAAGGTC CTACCCGGATTCGAACCGGGG TTGTCCGGAT chrIII:168078-168536 + 49 6.97e-10 AAAAAAGGTC CTACCCGGATTCGAACCGGGG TTGTCCGGAT chrVII:541711-542177 - 2 9.76e-10 GAACACTCCG ATACGGGGAGTCGAACCCCGG T chrV:176879-177402 - 55 9.76e-10 AAGTACTCCG ATACGGGGAGTCGAACCCCGG TCTCCACGGT chrXIII:290550-291103 - 71 9.76e-10 AAGACTCCG ATACGGGGAGTCGAACCCCGG TCTCCACGGT chrVII:401414-401614 + 68 9.76e-10 AAATACTCCG ATACGGGGAGTCGAACCCCGG TCTCCACGGT chrIII:81778-83190 + 33 9.76e-10 AAAAACTCCG ATACGGGGAGTCGAACCCCGG TCTCCACGGT chrV:354673-355375 - 6 9.76e-10 AAGTACTCCG ATACGGGGAGTCGAACCCCGG TCTCC chrXI:140642-141453 + 26 9.76e-10 GAAAACTCCG ATACGGGGAGTCGAACCCCGG TCTCCACGGT chrVIII:475483-475908 + 66 9.76e-10 TAAAATGTTC CAACCGAGGATCGAACTCGGG ACCTTTGCCG chrXIII:420328-420870 + 44 1.58e-09 AAAAATGATT TCGCCCAGGATCGAACTGGGG ACGTTCTGCG chrXI:307880-308428 + 45 1.58e-09 AAAATTGATT TCGCCCAGGATCGAACTGGGG ACGTTCTGCG chrXIII:372203-372662 + 68 1.58e-09 AAAAATGATT TCGCCCAGGATCGAACTGGGG ACGTTCTGCG chrXV:663414-664258 + 31 1.58e-09 AAAAATGATT TCGCCCAGGATCGAACTGGGG ACGTTCTGCG chrX:378197-378297 - 66 1.58e-09 AAAATTGATT TCGCCCAGGATCGAACTGGGG ACGTTCTGCG chrXIII:586434-586905 + 22 1.58e-09 AAAAATGATT TCGCCCAGGATCGAACTGGGG ACGTTCTGCG chrVII:823345-823720 - 48 1.58e-09 AAAAATGATT TCGCCCAGGATCGAACTGGGG ACGTTCTGCG chrVII:411962-412577 + 80 1.58e-09 AAACTTGATT TCGCCCAGGATCGAACTGGGG chrIV:488412-489133 + 80 2.49e-09 GATTCTGATC CAACCGAGGTTCGAACTCGGG chrII:326535-327123 + 18 2.49e-09 GAGTTTGATC CAACCGAGGTTCGAACTCGGG ATCTTCGCCG chrXII:214672-215064 + 70 3.33e-09 ATAAATGGAC GCAACCGGAATCGAACCGATG ACCTCTTCCT chrV:130874-131364 + 18 3.33e-09 AAAATAGGTC TTACCCGGATTCGAACCGGGG TTGTTCGGAT chrXV:853642-854810 + 16 3.33e-09 AAAATTGGAC GCAACCGGAATCGAACCGATG ACCTCTTCCT chrV:311723-312293 + 70 3.33e-09 TTCATTGGAC GCAACCGGAATCGAACCGATG ACCTCTTCCT chrXI:578755-579399 - 8 3.84e-09 AAGAACTCCT CATAGGGGGCTCGAACCCCTG ACATTTC chrXV:438419-439012 - 48 3.84e-09 AAGAACTCCT CATAGGGGGCTCGAACCCCTG ACATTTCGGT chrVII:115329-115734 - 77 3.84e-09 CCT CATAGGGGGCTCGAACCCCTG ACATTTCGGT chrXIV:602100-602564 - 78 5.81e-09 TC TCTAGCGGGATCGAACCGCTG ATCCCCGCGT chrV:442989-443380 + 73 5.81e-09 AAATATGGTC TCTAGCGGGATCGAACCGCTG ATCCCCG chrV:550950-551700 + 15 5.81e-09 AAAAATGGTC TCTAGCGGGATCGAACCGCTG ATCCCCGCGT chrXII:1051909-1052216 + 64 5.81e-09 AATAATGGTC TCTAGCGGGATCGAACCGCTG ATCCCCGCGT chrXVI:819305-819848 - 51 5.81e-09 ATAAATGGTC TCTAGCGGGATCGAACCGCTG ATCCCCGCGT chrXV:464275-464823 - 27 6.63e-09 TAAAAGGGGC GAGCTGGGAATTGAACCCAGG GCCTCTCGCA chrXII:92266-93013 - 36 6.63e-09 ATAAAGGGGC GAGCTGGGAATTGAACCCAGG GCCTCTCGCA chrXIII:195930-196302 + 7 6.63e-09 AGGGGC GAGCTGGGAATTGAACCCAGG GCCTCTCGCA chrXIV:95981-96508 + 52 9.77e-09 AAATTTGAGC GGTACGAGAATCGAACCCGTG TCCCCACCTT chrVII:779392-779926 - 53 9.77e-09 AATCTTGAGC GGTACGAGAATCGAACCCGTG TCCCCACCTT chrIV:568657-569288 - 6 2.26e-08 CAAAGCACTC ACGATGGGGGTCGAACCCATA ATCTT chrVII:736196-736657 - 10 2.26e-08 AACAACACTC ACGATGGGGGTCGAACCCATA ATCTTCTGA chrX:355177-355277 - 7 2.26e-08 CAAAGCACTC ACGATGGGGGTCGAACCCATA ATCTTC chrII:405600-406206 - 71 2.26e-08 AAAGCACTC ACGATGGGGGTCGAACCCATA ATCTTCTGAT chrX:374179-374279 + 44 2.26e-08 CAAAGCACTC ACGATGGGGGTCGAACCCATA ATCTTCTGAT chrVII:828412-828999 + 73 2.26e-08 AAAAGCACTC ACGATGGGGGTCGAACCCATA ATCTTCT chrXIII:131574-132122 + 32 2.26e-08 CAAAGCACTC ACGATGGGGGTCGAACCCATA ATCTTCTGAT chrIX:336100-336634 + 37 2.54e-08 AAAATCTCCG CGACGGGGAATTGAACCCCGA TCTGGCACGC chrXIII:463319-463977 - 2 2.54e-08 AAAATCTCCG CGACGGGGAATTGAACCCCGA T chrXI:513133-513591 + 25 2.54e-08 AAAATCTCCG CGACGGGGAATTGAACCCCGA TCTGGCACGC chrXII:426858-427441 - 79 2.54e-08 G CGACGGGGAATTGAACCCCGA TCTGGCACGC chrX:233700-233800 - 77 2.84e-08 TCC CCGCCAGGACTCGAACCTGGA ATCTCCTGGT chrII:9369-9899 - 57 3.53e-08 AATACTGAAG GATGCGAGGTTCGAACTCGCG CGGACAACCG chrII:347390-347914 - 59 3.53e-08 ATTACTGAAG GATGCGAGGTTCGAACTCGCG CGGACAACCG chrVII:700219-701264 - 40 5.38e-08 AATATTGATA CCCGCGGGGTTTGAACCCGCG CCTCCGAAGA chrIV:884266-884619 - 76 5.95e-08 GCTC GAGGTGGGGTTTGAACCCACG ACGGTCGCGT chrVI:191277-191784 + 38 6.58e-08 AAATGCGTCA CAGACAGGATTCGAACCTGCG CAGGTAAAAC chrXV:274469-274991 - 68 6.58e-08 AAATGCGTCA CAGACAGGATTCGAACCTGCG CAGGTAAAAC chrII:226978-227337 - 24 8.01e-08 AATAACGACA ACTGCAGGACTCGAACCTGCG CGGGCAAAGC chrXII:167719-168245 + 17 8.01e-08 AATAACGACA ACTGCAGGACTCGAACCTGCG CGGGCAAAGC chrIV:437538-438212 - 3 8.01e-08 AATGACGACA ACTGCAGGACTCGAACCTGCG CG chrIV:980741-981218 + 50 8.01e-08 AAAAACGACA ACTGCAGGACTCGAACCTGCG CGGGCAAAGC chrII:266173-266702 - 38 9.70e-08 AAAAATGCTT CCAATCGGATTTGAACCGATG ATCTCCACAT chrIX:300009-300524 + 17 1.28e-07 AAGATAGCCC TGTAGGGGGCTCGAACCCCTA ACCTTATGAT chrIV:1201535-1202036 - 62 1.28e-07 TTATTAGCCC TGTAGGGGGCTCGAACCCCTA ACCTTATGAT chrXIII:480414-480825 + 57 1.28e-07 AAAGAAGCCC TGTAGGGGGCTCGAACCCCTA ACCTTATGAT chrII:642839-643254 + 16 1.53e-07 AAAGAAGCTC GCACTCAGGATCGAACTAAGG ACCAACAGAT chrIV:619729-620234 + 43 1.53e-07 AAAATCTTCC CCGCCAGGACTTGAACCTGGA ATCTTCTGGT chrV:492211-492552 + 26 1.53e-07 TAATCCTTCC CCGCCAGGACTTGAACCTGGA ATCTTCTGGT chrXVI:435623-436192 + 41 1.53e-07 AAGAAAGCTC GCACTCAGGATCGAACTAAGG ACCAACAGAT chrIII:127581-127890 - 79 1.83e-07 C CCAGTGAGGGTTGAACTCACG ATCTTGCGAT chrXIV:632421-632834 - 70 1.83e-07 AAAAACGACC CCAGTGAGGGTTGAACTCACG ATCTTGCGAT chrXIII:572558-573165 + 77 1.83e-07 AAATGTGCTC CAGGGGAGGTTCGAACTCTCG ACC chrVII:730961-731425 - 42 1.83e-07 AAAAACGACC CCAGTGAGGGTTGAACTCACG ATCTTGCGAT chrXII:975731-976188 + 79 1.83e-07 ATAAACGACC CCAGTGAGGGTTGAACTCACG A chrXV:976275-976687 - 37 1.83e-07 AATATTGCTC CAGGGGAGGTTCGAACTCTCG ACCTTCAGAT chrXVI:856722-857131 - 73 1.99e-07 AATGGAC GAGTCCGGAATCGAACCGGAG ACCTCTCCCA chrX:197146-197246 + 75 1.99e-07 GAAATTGGAC GAGTCCGGAATCGAACCGGAG ACCTC chrXIII:320977-321331 + 48 1.99e-07 AAAAATGGAC GAGTCCGGAATCGAACCGGAG ACCTCTCCCA chrV:288149-288746 + 51 2.36e-07 AAAAACGACA CCAGCAGGATTTGAACCAGCG CGGGCAGAGC chrIX:248607-249253 - 26 2.36e-07 AATAACGACA CCAGCAGGATTTGAACCAGCG CGGGCAGAGC chrVIII:466833-467269 - 35 3.54e-07 TATAATGCCA CCTGCCAGAATTGAACTAGCG ACCTTTGCAT chrIV:1095135-1095656 + 30 3.54e-07 AAAAATGCGA ACTCTGTGGATCGAACACAGG ACCTCCAGAT chrXIV:374708-375100 - 80 3.54e-07 . ACTCTGTGGATCGAACACAGG ACCTCCAGAT chrVIII:62513-63058 - 66 4.13e-07 ATAAATGCCA TCTCCTAGAATCGAACCAGGG TTTCATCGGC chrXIII:837691-838386 - 3 4.80e-07 AAATATCTCC CGGGGGCGAGTCGAACGCCCG AT chrIV:946148-946632 - 35 4.80e-07 AAAAATCTCC CGGGGGCGAGTCGAACGCCCG ATCTCAAGAT chrVI:167252-167694 - 77 4.80e-07 TCC CGGGGGCGAGTCGAACGCCCG ATCTCAAGAT chrVIII:358240-358796 + 15 1.11e-06 AAATATGCGA ATTCTGTGGATCGAACACAGG ACCTCCAGAT chrXVI:622270-622865 + 28 1.11e-06 ATAAATGCGA ATTCTGTGGATCGAACACAGG ACCTCCAGAT chrXVI:828994-829379 - 26 1.43e-06 TTTTATACTT AATCCGAGATTCGGACCCCTA GTGACAGAAT chrXVI:744090-744585 - 43 1.43e-06 AATTTTGCCA CCTGTCAGAATTGAACTAACG ACCTTTGCAT chrXII:628189-628788 - 34 1.82e-06 AATAATGGTT GCTAAGAGATTCGAACTCTTG CATCTTACGA chrIII:90859-91103 - 16 1.82e-06 AATAATGGTT GCTAAGAGATTCGAACTCTTG CATCTTACGA chrXVI:338615-339174 + 9 1.82e-06 ATTTAGCG CCGCTCGGTTTCGATCCGAGG ACATCAGGGT chrI:180937-181464 - 79 1.82e-06 T GCTAAGAGATTCGAACTCTTG CATCTTACGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NMDMBSGGRDTCGAACCSVKG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123352-123801 2.7e-11 55_[+1]_24 chrIV:83433-83802 6.8e-11 25_[-1]_54 chrXV:226426-226901 6.8e-11 2_[+1]_77 chrX:531569-531669 6.8e-11 34_[-1]_45 chrVII:845450-846034 6.8e-11 1_[-1]_78 chrXIII:183793-183961 6.8e-11 75_[+1]_4 chrIV:1016940-1017509 1e-10 37_[+1]_42 chrXIII:807980-808554 4.1e-10 33_[+1]_46 chrXII:448470-448848 7e-10 45_[+1]_34 chrVIII:133941-134772 7e-10 60_[-1]_19 chrIV:644926-645378 7e-10 55_[+1]_24 chrIII:168078-168536 7e-10 48_[+1]_31 chrVII:541711-542177 9.8e-10 1_[-1]_78 chrV:176879-177402 9.8e-10 54_[-1]_25 chrXIII:290550-291103 9.8e-10 70_[-1]_9 chrVII:401414-401614 9.8e-10 67_[+1]_12 chrIII:81778-83190 9.8e-10 32_[+1]_47 chrV:354673-355375 9.8e-10 5_[-1]_74 chrXI:140642-141453 9.8e-10 25_[+1]_54 chrVIII:475483-475908 9.8e-10 65_[+1]_14 chrXIII:420328-420870 1.6e-09 43_[+1]_36 chrXI:307880-308428 1.6e-09 44_[+1]_35 chrXIII:372203-372662 1.6e-09 67_[+1]_12 chrXV:663414-664258 1.6e-09 30_[+1]_49 chrX:378197-378297 1.6e-09 65_[-1]_14 chrXIII:586434-586905 1.6e-09 21_[+1]_58 chrVII:823345-823720 1.6e-09 47_[-1]_32 chrVII:411962-412577 1.6e-09 79_[+1] chrIV:488412-489133 2.5e-09 79_[+1] chrII:326535-327123 2.5e-09 17_[+1]_62 chrXII:214672-215064 3.3e-09 69_[+1]_10 chrV:130874-131364 3.3e-09 17_[+1]_62 chrXV:853642-854810 3.3e-09 15_[+1]_64 chrV:311723-312293 3.3e-09 69_[+1]_10 chrXI:578755-579399 3.8e-09 7_[-1]_72 chrXV:438419-439012 3.8e-09 47_[-1]_32 chrVII:115329-115734 3.8e-09 76_[-1]_3 chrXIV:602100-602564 5.8e-09 77_[-1]_2 chrV:442989-443380 5.8e-09 72_[+1]_7 chrV:550950-551700 5.8e-09 14_[+1]_65 chrXII:1051909-1052216 5.8e-09 63_[+1]_16 chrXVI:819305-819848 5.8e-09 50_[-1]_29 chrXV:464275-464823 6.6e-09 26_[-1]_53 chrXII:92266-93013 6.6e-09 35_[-1]_44 chrXIII:195930-196302 6.6e-09 6_[+1]_73 chrXIV:95981-96508 9.8e-09 51_[+1]_28 chrVII:779392-779926 9.8e-09 52_[-1]_27 chrIV:568657-569288 2.3e-08 5_[-1]_74 chrVII:736196-736657 2.3e-08 9_[-1]_70 chrX:355177-355277 2.3e-08 6_[-1]_73 chrII:405600-406206 2.3e-08 70_[-1]_9 chrX:374179-374279 2.3e-08 43_[+1]_36 chrVII:828412-828999 2.3e-08 72_[+1]_7 chrXIII:131574-132122 2.3e-08 31_[+1]_48 chrIX:336100-336634 2.5e-08 36_[+1]_43 chrXIII:463319-463977 2.5e-08 1_[-1]_78 chrXI:513133-513591 2.5e-08 24_[+1]_55 chrXII:426858-427441 2.5e-08 78_[-1]_1 chrX:233700-233800 2.8e-08 76_[-1]_3 chrII:9369-9899 3.5e-08 56_[-1]_23 chrII:347390-347914 3.5e-08 58_[-1]_21 chrVII:700219-701264 5.4e-08 39_[-1]_40 chrIV:884266-884619 6e-08 75_[-1]_4 chrVI:191277-191784 6.6e-08 37_[+1]_42 chrXV:274469-274991 6.6e-08 67_[-1]_12 chrII:226978-227337 8e-08 23_[-1]_56 chrXII:167719-168245 8e-08 16_[+1]_63 chrIV:437538-438212 8e-08 2_[-1]_77 chrIV:980741-981218 8e-08 49_[+1]_30 chrII:266173-266702 9.7e-08 37_[-1]_42 chrIX:300009-300524 1.3e-07 16_[+1]_63 chrIV:1201535-1202036 1.3e-07 61_[-1]_18 chrXIII:480414-480825 1.3e-07 56_[+1]_23 chrII:642839-643254 1.5e-07 15_[+1]_64 chrIV:619729-620234 1.5e-07 42_[+1]_37 chrV:492211-492552 1.5e-07 25_[+1]_54 chrXVI:435623-436192 1.5e-07 40_[+1]_39 chrIII:127581-127890 1.8e-07 78_[-1]_1 chrXIV:632421-632834 1.8e-07 69_[-1]_10 chrXIII:572558-573165 1.8e-07 76_[+1]_3 chrVII:730961-731425 1.8e-07 41_[-1]_38 chrXII:975731-976188 1.8e-07 78_[+1]_1 chrXV:976275-976687 1.8e-07 36_[-1]_43 chrXVI:856722-857131 2e-07 72_[-1]_7 chrX:197146-197246 2e-07 74_[+1]_5 chrXIII:320977-321331 2e-07 47_[+1]_32 chrV:288149-288746 2.4e-07 50_[+1]_29 chrIX:248607-249253 2.4e-07 25_[-1]_54 chrVIII:466833-467269 3.5e-07 34_[-1]_45 chrIV:1095135-1095656 3.5e-07 29_[+1]_50 chrXIV:374708-375100 3.5e-07 79_[-1] chrVIII:62513-63058 4.1e-07 65_[-1]_14 chrXIII:837691-838386 4.8e-07 2_[-1]_77 chrIV:946148-946632 4.8e-07 34_[-1]_45 chrVI:167252-167694 4.8e-07 76_[-1]_3 chrVIII:358240-358796 1.1e-06 14_[+1]_65 chrXVI:622270-622865 1.1e-06 27_[+1]_52 chrXVI:828994-829379 1.4e-06 25_[-1]_54 chrXVI:744090-744585 1.4e-06 42_[-1]_37 chrXII:628189-628788 1.8e-06 33_[-1]_46 chrIII:90859-91103 1.8e-06 15_[-1]_64 chrXVI:338615-339174 1.8e-06 8_[+1]_71 chrI:180937-181464 1.8e-06 78_[-1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NMDMBSGGRDTCGAACCSVKG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF NMDMBSGGRDTCGAACCSVKG width=21 seqs=103 chrIII:123352-123801 ( 56) GAGCCGGGACTCGAACCCGGG 1 chrIV:83433-83802 ( 26) AAGCCCGGAATCGAACCGGGG 1 chrXV:226426-226901 ( 3) AAGCCCGGAATCGAACCGGGG 1 chrX:531569-531669 ( 35) AAGCCCGGAATCGAACCGGGG 1 chrVII:845450-846034 ( 2) AAGCCCGGAATCGAACCGGGG 1 chrXIII:183793-183961 ( 76) AAGCCCGGAATCGAACCGGGG 1 chrIV:1016940-1017509 ( 38) AAGCGGGGAGTCGAACCCCGG 1 chrXIII:807980-808554 ( 34) CCACCCGGATTCGAACTGGGG 1 chrXII:448470-448848 ( 46) CTACCCGGATTCGAACCGGGG 1 chrVIII:133941-134772 ( 61) CTACCCGGATTCGAACCGGGG 1 chrIV:644926-645378 ( 56) CTACCCGGATTCGAACCGGGG 1 chrIII:168078-168536 ( 49) CTACCCGGATTCGAACCGGGG 1 chrVII:541711-542177 ( 2) ATACGGGGAGTCGAACCCCGG 1 chrV:176879-177402 ( 55) ATACGGGGAGTCGAACCCCGG 1 chrXIII:290550-291103 ( 71) ATACGGGGAGTCGAACCCCGG 1 chrVII:401414-401614 ( 68) ATACGGGGAGTCGAACCCCGG 1 chrIII:81778-83190 ( 33) ATACGGGGAGTCGAACCCCGG 1 chrV:354673-355375 ( 6) ATACGGGGAGTCGAACCCCGG 1 chrXI:140642-141453 ( 26) ATACGGGGAGTCGAACCCCGG 1 chrVIII:475483-475908 ( 66) CAACCGAGGATCGAACTCGGG 1 chrXIII:420328-420870 ( 44) TCGCCCAGGATCGAACTGGGG 1 chrXI:307880-308428 ( 45) TCGCCCAGGATCGAACTGGGG 1 chrXIII:372203-372662 ( 68) TCGCCCAGGATCGAACTGGGG 1 chrXV:663414-664258 ( 31) TCGCCCAGGATCGAACTGGGG 1 chrX:378197-378297 ( 66) TCGCCCAGGATCGAACTGGGG 1 chrXIII:586434-586905 ( 22) TCGCCCAGGATCGAACTGGGG 1 chrVII:823345-823720 ( 48) TCGCCCAGGATCGAACTGGGG 1 chrVII:411962-412577 ( 80) TCGCCCAGGATCGAACTGGGG 1 chrIV:488412-489133 ( 80) CAACCGAGGTTCGAACTCGGG 1 chrII:326535-327123 ( 18) CAACCGAGGTTCGAACTCGGG 1 chrXII:214672-215064 ( 70) GCAACCGGAATCGAACCGATG 1 chrV:130874-131364 ( 18) TTACCCGGATTCGAACCGGGG 1 chrXV:853642-854810 ( 16) GCAACCGGAATCGAACCGATG 1 chrV:311723-312293 ( 70) GCAACCGGAATCGAACCGATG 1 chrXI:578755-579399 ( 8) CATAGGGGGCTCGAACCCCTG 1 chrXV:438419-439012 ( 48) CATAGGGGGCTCGAACCCCTG 1 chrVII:115329-115734 ( 77) CATAGGGGGCTCGAACCCCTG 1 chrXIV:602100-602564 ( 78) TCTAGCGGGATCGAACCGCTG 1 chrV:442989-443380 ( 73) TCTAGCGGGATCGAACCGCTG 1 chrV:550950-551700 ( 15) TCTAGCGGGATCGAACCGCTG 1 chrXII:1051909-1052216 ( 64) TCTAGCGGGATCGAACCGCTG 1 chrXVI:819305-819848 ( 51) TCTAGCGGGATCGAACCGCTG 1 chrXV:464275-464823 ( 27) GAGCTGGGAATTGAACCCAGG 1 chrXII:92266-93013 ( 36) GAGCTGGGAATTGAACCCAGG 1 chrXIII:195930-196302 ( 7) GAGCTGGGAATTGAACCCAGG 1 chrXIV:95981-96508 ( 52) GGTACGAGAATCGAACCCGTG 1 chrVII:779392-779926 ( 53) GGTACGAGAATCGAACCCGTG 1 chrIV:568657-569288 ( 6) ACGATGGGGGTCGAACCCATA 1 chrVII:736196-736657 ( 10) ACGATGGGGGTCGAACCCATA 1 chrX:355177-355277 ( 7) ACGATGGGGGTCGAACCCATA 1 chrII:405600-406206 ( 71) ACGATGGGGGTCGAACCCATA 1 chrX:374179-374279 ( 44) ACGATGGGGGTCGAACCCATA 1 chrVII:828412-828999 ( 73) ACGATGGGGGTCGAACCCATA 1 chrXIII:131574-132122 ( 32) ACGATGGGGGTCGAACCCATA 1 chrIX:336100-336634 ( 37) CGACGGGGAATTGAACCCCGA 1 chrXIII:463319-463977 ( 2) CGACGGGGAATTGAACCCCGA 1 chrXI:513133-513591 ( 25) CGACGGGGAATTGAACCCCGA 1 chrXII:426858-427441 ( 79) CGACGGGGAATTGAACCCCGA 1 chrX:233700-233800 ( 77) CCGCCAGGACTCGAACCTGGA 1 chrII:9369-9899 ( 57) GATGCGAGGTTCGAACTCGCG 1 chrII:347390-347914 ( 59) GATGCGAGGTTCGAACTCGCG 1 chrVII:700219-701264 ( 40) CCCGCGGGGTTTGAACCCGCG 1 chrIV:884266-884619 ( 76) GAGGTGGGGTTTGAACCCACG 1 chrVI:191277-191784 ( 38) CAGACAGGATTCGAACCTGCG 1 chrXV:274469-274991 ( 68) CAGACAGGATTCGAACCTGCG 1 chrII:226978-227337 ( 24) ACTGCAGGACTCGAACCTGCG 1 chrXII:167719-168245 ( 17) ACTGCAGGACTCGAACCTGCG 1 chrIV:437538-438212 ( 3) ACTGCAGGACTCGAACCTGCG 1 chrIV:980741-981218 ( 50) ACTGCAGGACTCGAACCTGCG 1 chrII:266173-266702 ( 38) CCAATCGGATTTGAACCGATG 1 chrIX:300009-300524 ( 17) TGTAGGGGGCTCGAACCCCTA 1 chrIV:1201535-1202036 ( 62) TGTAGGGGGCTCGAACCCCTA 1 chrXIII:480414-480825 ( 57) TGTAGGGGGCTCGAACCCCTA 1 chrII:642839-643254 ( 16) GCACTCAGGATCGAACTAAGG 1 chrIV:619729-620234 ( 43) CCGCCAGGACTTGAACCTGGA 1 chrV:492211-492552 ( 26) CCGCCAGGACTTGAACCTGGA 1 chrXVI:435623-436192 ( 41) GCACTCAGGATCGAACTAAGG 1 chrIII:127581-127890 ( 79) CCAGTGAGGGTTGAACTCACG 1 chrXIV:632421-632834 ( 70) CCAGTGAGGGTTGAACTCACG 1 chrXIII:572558-573165 ( 77) CAGGGGAGGTTCGAACTCTCG 1 chrVII:730961-731425 ( 42) CCAGTGAGGGTTGAACTCACG 1 chrXII:975731-976188 ( 79) CCAGTGAGGGTTGAACTCACG 1 chrXV:976275-976687 ( 37) CAGGGGAGGTTCGAACTCTCG 1 chrXVI:856722-857131 ( 73) GAGTCCGGAATCGAACCGGAG 1 chrX:197146-197246 ( 75) GAGTCCGGAATCGAACCGGAG 1 chrXIII:320977-321331 ( 48) GAGTCCGGAATCGAACCGGAG 1 chrV:288149-288746 ( 51) CCAGCAGGATTTGAACCAGCG 1 chrIX:248607-249253 ( 26) CCAGCAGGATTTGAACCAGCG 1 chrVIII:466833-467269 ( 35) CCTGCCAGAATTGAACTAGCG 1 chrIV:1095135-1095656 ( 30) ACTCTGTGGATCGAACACAGG 1 chrXIV:374708-375100 ( 80) ACTCTGTGGATCGAACACAGG 1 chrVIII:62513-63058 ( 66) TCTCCTAGAATCGAACCAGGG 1 chrXIII:837691-838386 ( 3) CGGGGGCGAGTCGAACGCCCG 1 chrIV:946148-946632 ( 35) CGGGGGCGAGTCGAACGCCCG 1 chrVI:167252-167694 ( 77) CGGGGGCGAGTCGAACGCCCG 1 chrVIII:358240-358796 ( 15) ATTCTGTGGATCGAACACAGG 1 chrXVI:622270-622865 ( 28) ATTCTGTGGATCGAACACAGG 1 chrXVI:828994-829379 ( 26) AATCCGAGATTCGGACCCCTA 1 chrXVI:744090-744585 ( 43) CCTGTCAGAATTGAACTAACG 1 chrXII:628189-628788 ( 34) GCTAAGAGATTCGAACTCTTG 1 chrIII:90859-91103 ( 16) GCTAAGAGATTCGAACTCTTG 1 chrXVI:338615-339174 ( 9) CCGCTCGGTTTCGATCCGAGG 1 chrI:180937-181464 ( 79) GCTAAGAGATTCGAACTCTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NMDMBSGGRDTCGAACCSVKG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.795 E= 2.9e-288 -13 86 1 -82 -23 134 -72 -118 1 -431 101 -8 -13 134 8 -340 -340 128 50 -40 -153 86 147 -498 -8 -272 174 -299 -1333 -1333 238 -1333 85 -1333 118 -498 44 -50 15 -40 -1333 -1333 -1333 170 -1333 207 -1333 -66 -1333 -1333 238 -1333 169 -1333 -431 -1333 169 -1333 -1333 -498 -1333 238 -1333 -1333 -299 180 -272 -23 -218 147 69 -182 -23 45 115 -266 -340 22 131 -18 -82 -1333 210 -1333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NMDMBSGGRDTCGAACCSVKG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 103 E= 2.9e-288 0.281553 0.349515 0.194175 0.174757 0.262136 0.485437 0.116505 0.135922 0.310680 0.009709 0.388350 0.291262 0.281553 0.485437 0.203883 0.029126 0.029126 0.466019 0.271845 0.233010 0.106796 0.349515 0.533981 0.009709 0.291262 0.029126 0.640777 0.038835 0.000000 0.000000 1.000000 0.000000 0.553398 0.000000 0.436893 0.009709 0.417476 0.135922 0.213592 0.233010 0.000000 0.000000 0.000000 1.000000 0.000000 0.805825 0.000000 0.194175 0.000000 0.000000 1.000000 0.000000 0.990291 0.000000 0.009709 0.000000 0.990291 0.000000 0.000000 0.009709 0.000000 1.000000 0.000000 0.000000 0.038835 0.669903 0.029126 0.262136 0.067961 0.533981 0.310680 0.087379 0.262136 0.262136 0.427184 0.048544 0.029126 0.223301 0.475728 0.271845 0.174757 0.000000 0.825243 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NMDMBSGGRDTCGAACCSVKG MEME-1 regular expression -------------------------------------------------------------------------------- [CA][CA][GAT][CAG][CGT][GC][GA]G[AG][ATG]TCGAAC[CT][CG][GAC][GTC]G -------------------------------------------------------------------------------- Time 351.72 secs. ******************************************************************************** ******************************************************************************** MOTIF BKTGGCBYAGTKGKWWRRGSS MEME-2 width = 21 sites = 73 llr = 1096 E-value = 5.1e-162 ******************************************************************************** -------------------------------------------------------------------------------- Motif BKTGGCBYAGTKGKWWRRGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 11:2:::1a2::::3555::: pos.-specific C 4::::855:::2::2:21244 probability G 25:8a:22:8:5a51233754 matrix T 24a::233::a3:454:1112 bits 2.4 * * 2.1 * * 1.9 * * 1.7 * ** * * Relative 1.4 **** *** * Entropy 1.2 **** *** * * (21.7 bits) 1.0 **** *** * ** 0.7 ****** *** ** * *** 0.5 ************* ** *** 0.2 ********************* 0.0 --------------------- Multilevel CGTGGCCCAGTGGGTAAAGGG consensus TT A TT A T TATGG CC sequence G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCBYAGTKGKWWRRGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:569686-570175 - 35 8.36e-11 ACAGTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:602100-602564 + 35 8.36e-11 ACAATGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrII:197155-197837 + 53 8.36e-11 ATCAAGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrV:550950-551700 - 58 8.36e-11 TTACAGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIX:183307-183713 - 28 8.36e-11 TTCCTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXVI:819305-819848 + 8 8.36e-11 ATGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrX:523806-523906 - 31 1.03e-10 TTAAAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXIII:259021-259479 - 14 1.03e-10 AGTATGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:167719-168245 - 68 1.03e-10 CATATGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:1150736-1151171 - 13 8.85e-10 TTTCAGTCCC AGTGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrX:617716-617816 + 49 1.47e-09 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXV:340146-340613 - 17 2.06e-09 ATCTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXI:490743-491211 + 46 2.06e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrX:233700-233800 + 35 2.06e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrII:9369-9899 + 4 2.06e-09 AGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrII:347390-347914 + 6 2.06e-09 GGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrV:492211-492552 - 68 2.06e-09 TCCTATTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXII:962775-963312 - 37 2.06e-09 TCGACGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrX:424278-424378 - 45 2.06e-09 AAGATGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXV:853642-854810 - 58 5.05e-09 CATCAGGGCA CATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrXVI:856722-857131 + 31 7.67e-09 GATTCGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXII:656834-657214 - 7 7.67e-09 AAATTGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCT chrXI:219659-220127 + 57 7.67e-09 AAATAGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVII:774105-774620 + 42 7.67e-09 TAATTGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVII:115329-115734 + 12 1.30e-08 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXV:228073-228565 + 67 1.89e-08 TATTAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrIII:127581-127890 + 36 1.89e-08 AAAATGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXIV:632421-632834 + 27 1.89e-08 AAAGTGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXI:74400-74875 + 42 1.89e-08 AATTAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrIX:300009-300524 - 59 2.40e-08 AAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrX:414711-414811 + 43 2.40e-08 AATTAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:1201535-1202036 + 20 2.40e-08 AAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIII:151130-151615 - 9 2.40e-08 AAAGAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTC chrXIV:374708-375100 + 20 3.04e-08 AATAAGCGGA CTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXII:605141-605616 - 79 3.41e-08 G TGTAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrVIII:115936-116416 - 28 3.81e-08 TTAGAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXV:353899-354313 - 32 3.81e-08 TTACTGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXI:83970-84454 + 51 5.30e-08 TGTATGGAGG GTTGGCCGAGTGGTCTAATGC GGCAGACTTA chrXV:663414-664258 - 74 5.89e-08 TGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrX:378197-378297 + 23 5.89e-08 TAATAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:586434-586905 - 65 5.89e-08 ACTATGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:823345-823720 + 5 5.89e-08 GTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrX:517650-517750 - 35 7.26e-08 AGTTAAGCGC CGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrIII:149618-150198 + 67 7.26e-08 TGTTGAGCGC CGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrXVI:338615-339174 - 50 7.26e-08 TTAGCAGCGC CGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrVII:440457-441140 - 34 8.90e-08 TATATGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrII:36237-36594 + 38 8.90e-08 TGTAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:358240-358796 - 76 8.90e-08 CGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:237752-238160 - 8 8.90e-08 AGTAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACT chrVII:205307-205780 + 33 1.19e-07 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:422851-423349 + 47 1.19e-07 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrX:422384-422484 + 64 2.27e-07 TGTATGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrX:390861-390961 - 31 2.27e-07 ATAGTGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrIV:1175594-1176063 + 56 2.27e-07 ACAAAGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrIII:69-1031 - 47 3.47e-07 TAGGGTAAGC GGTAGTGGAGTTGGATACGGG TAATTGGAGG chrVII:661496-661968 + 72 4.41e-07 AATTTGCCTC CTTAGCTTAGTGGTAGAGCGT TGCACTTG chrXVI:744090-744585 + 2 4.41e-07 C CTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrVII:1003985-1004418 + 70 4.41e-07 GGTTTGCCTC CTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrXVI:860034-860691 + 72 6.95e-07 AACAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGC chrXV:226426-226901 - 43 6.95e-07 ATTCAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrX:396589-396689 - 16 6.95e-07 AGTAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVIII:556581-556787 + 25 8.03e-07 GCAGGGTAAT GGTAGTGGAGTTGGATATGGG TAATTGGAGG chrXIII:747736-748203 - 19 8.61e-07 GACTAGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrII:405600-406206 + 30 8.61e-07 TAGTAGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrVII:287166-287754 - 20 8.61e-07 AAGATGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrX:415735-415835 - 71 8.61e-07 AGTTGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrXIII:131574-132122 - 73 8.61e-07 TAGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrVII:878558-879028 - 47 8.61e-07 AAGATGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrXI:302690-303195 + 31 8.61e-07 AAGATGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrI:138931-139370 + 57 1.13e-06 AGTACGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXIII:195930-196302 - 79 1.13e-06 G TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrII:642839-643254 - 57 2.11e-06 AGAAAGCTCG TATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrIV:1256858-1257306 - 22 6.12e-06 TCTTAGCGAA AGTGGTTCAGTGGTTAGAATT CATGCTTCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCBYAGTKGKWWRRGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:569686-570175 8.4e-11 34_[-2]_45 chrXIV:602100-602564 8.4e-11 34_[+2]_45 chrII:197155-197837 8.4e-11 52_[+2]_27 chrV:550950-551700 8.4e-11 57_[-2]_22 chrIX:183307-183713 8.4e-11 27_[-2]_52 chrXVI:819305-819848 8.4e-11 7_[+2]_72 chrX:523806-523906 1e-10 30_[-2]_49 chrXIII:259021-259479 1e-10 13_[-2]_66 chrXII:167719-168245 1e-10 67_[-2]_12 chrIV:1150736-1151171 8.9e-10 12_[-2]_67 chrX:617716-617816 1.5e-09 48_[+2]_31 chrXV:340146-340613 2.1e-09 16_[-2]_63 chrXI:490743-491211 2.1e-09 45_[+2]_34 chrX:233700-233800 2.1e-09 34_[+2]_45 chrII:9369-9899 2.1e-09 3_[+2]_76 chrII:347390-347914 2.1e-09 5_[+2]_74 chrV:492211-492552 2.1e-09 67_[-2]_12 chrXII:962775-963312 2.1e-09 36_[-2]_43 chrX:424278-424378 2.1e-09 44_[-2]_35 chrXV:853642-854810 5.1e-09 57_[-2]_22 chrXVI:856722-857131 7.7e-09 30_[+2]_49 chrXII:656834-657214 7.7e-09 6_[-2]_73 chrXI:219659-220127 7.7e-09 56_[+2]_23 chrVII:774105-774620 7.7e-09 41_[+2]_38 chrVII:115329-115734 1.3e-08 11_[+2]_68 chrXV:228073-228565 1.9e-08 66_[+2]_13 chrIII:127581-127890 1.9e-08 35_[+2]_44 chrXIV:632421-632834 1.9e-08 26_[+2]_53 chrXI:74400-74875 1.9e-08 41_[+2]_38 chrIX:300009-300524 2.4e-08 58_[-2]_21 chrX:414711-414811 2.4e-08 42_[+2]_37 chrIV:1201535-1202036 2.4e-08 19_[+2]_60 chrIII:151130-151615 2.4e-08 8_[-2]_71 chrXIV:374708-375100 3e-08 19_[+2]_60 chrXII:605141-605616 3.4e-08 78_[-2]_1 chrVIII:115936-116416 3.8e-08 27_[-2]_52 chrXV:353899-354313 3.8e-08 31_[-2]_48 chrXI:83970-84454 5.3e-08 50_[+2]_29 chrXV:663414-664258 5.9e-08 73_[-2]_6 chrX:378197-378297 5.9e-08 22_[+2]_57 chrXIII:586434-586905 5.9e-08 64_[-2]_15 chrVII:823345-823720 5.9e-08 4_[+2]_75 chrX:517650-517750 7.3e-08 34_[-2]_45 chrIII:149618-150198 7.3e-08 66_[+2]_13 chrXVI:338615-339174 7.3e-08 49_[-2]_30 chrVII:440457-441140 8.9e-08 33_[-2]_46 chrII:36237-36594 8.9e-08 37_[+2]_42 chrVIII:358240-358796 8.9e-08 75_[-2]_4 chrVIII:237752-238160 8.9e-08 7_[-2]_72 chrVII:205307-205780 1.2e-07 32_[+2]_47 chrVII:422851-423349 1.2e-07 46_[+2]_33 chrX:422384-422484 2.3e-07 63_[+2]_16 chrX:390861-390961 2.3e-07 30_[-2]_49 chrIV:1175594-1176063 2.3e-07 55_[+2]_24 chrIII:69-1031 3.5e-07 46_[-2]_33 chrVII:661496-661968 4.4e-07 71_[+2]_8 chrXVI:744090-744585 4.4e-07 1_[+2]_78 chrVII:1003985-1004418 4.4e-07 69_[+2]_10 chrXVI:860034-860691 7e-07 71_[+2]_8 chrXV:226426-226901 7e-07 42_[-2]_37 chrX:396589-396689 7e-07 15_[-2]_64 chrVIII:556581-556787 8e-07 24_[+2]_55 chrXIII:747736-748203 8.6e-07 18_[-2]_61 chrII:405600-406206 8.6e-07 29_[+2]_50 chrVII:287166-287754 8.6e-07 19_[-2]_60 chrX:415735-415835 8.6e-07 70_[-2]_9 chrXIII:131574-132122 8.6e-07 72_[-2]_7 chrVII:878558-879028 8.6e-07 46_[-2]_33 chrXI:302690-303195 8.6e-07 30_[+2]_49 chrI:138931-139370 1.1e-06 56_[+2]_23 chrXIII:195930-196302 1.1e-06 78_[-2]_1 chrII:642839-643254 2.1e-06 56_[-2]_23 chrIV:1256858-1257306 6.1e-06 21_[-2]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCBYAGTKGKWWRRGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BKTGGCBYAGTKGKWWRRGSS width=21 seqs=73 chrXIV:569686-570175 ( 35) CTTGGCCCAGTTGGTTAAGGC 1 chrXIV:602100-602564 ( 35) CTTGGCCCAGTTGGTTAAGGC 1 chrII:197155-197837 ( 53) CTTGGCCCAGTTGGTTAAGGC 1 chrV:550950-551700 ( 58) CTTGGCCCAGTTGGTTAAGGC 1 chrIX:183307-183713 ( 28) CTTGGCCCAGTTGGTTAAGGC 1 chrXVI:819305-819848 ( 8) CTTGGCCCAGTTGGTTAAGGC 1 chrX:523806-523906 ( 31) CTTGGCCGAGTGGTTAAGGCG 1 chrXIII:259021-259479 ( 14) CTTGGCCGAGTGGTTAAGGCG 1 chrXII:167719-168245 ( 68) CTTGGCCGAGTGGTTAAGGCG 1 chrIV:1150736-1151171 ( 13) AGTGGCCGAGTGGTTAAGGCG 1 chrX:617716-617816 ( 49) TTTGGCCGAGTGGTTTAAGGC 1 chrXV:340146-340613 ( 17) CGTGGCCCAATGGTCACGGCG 1 chrXI:490743-491211 ( 46) CGTGGCCCAATGGTCACGGCG 1 chrX:233700-233800 ( 35) CGTGGCCCAATGGTCACGGCG 1 chrII:9369-9899 ( 4) GTTGGCCGAGTGGTCTAAGGC 1 chrII:347390-347914 ( 6) GTTGGCCGAGTGGTCTAAGGC 1 chrV:492211-492552 ( 68) CGTGGCCCAATGGTCACGGCG 1 chrXII:962775-963312 ( 37) GTTGGCCGAGTGGTCTAAGGC 1 chrX:424278-424378 ( 45) GTTGGCCGAGTGGTCTAAGGC 1 chrXV:853642-854810 ( 58) CATGGCGCAGTTGGTAGCGCG 1 chrXVI:856722-857131 ( 31) TGTGGCGTAGTCGGTAGCGCG 1 chrXII:656834-657214 ( 7) TGTGGCGTAGTCGGTAGCGCG 1 chrXI:219659-220127 ( 57) TGTGGCGTAGTCGGTAGCGCG 1 chrVII:774105-774620 ( 42) TGTGGCGTAGTCGGTAGCGCG 1 chrVII:115329-115734 ( 12) GTTAGCTCAGTTGGTAGAGCG 1 chrXV:228073-228565 ( 67) CATGGCCAAGTTGGTTAAGGC 1 chrIII:127581-127890 ( 36) CATGGCCAAGTTGGTTAAGGC 1 chrXIV:632421-632834 ( 27) CATGGCCAAGTTGGTTAAGGC 1 chrXI:74400-74875 ( 42) CATGGCCAAGTTGGTTAAGGC 1 chrIX:300009-300524 ( 59) GTTGGCGCAATCGGTAGCGCG 1 chrX:414711-414811 ( 43) GTTGGCGCAATCGGTAGCGCG 1 chrIV:1201535-1202036 ( 20) GTTGGCGCAATCGGTAGCGCG 1 chrIII:151130-151615 ( 9) GTTGGCGCAATCGGTAGCGCG 1 chrXIV:374708-375100 ( 20) CTTAGCTCAGTTGGGAGAGCG 1 chrXII:605141-605616 ( 79) TGTAGCTCAGTGGTTAGAGCT 1 chrVIII:115936-116416 ( 28) TATGGCCAAGTTGGTAAGGCG 1 chrXV:353899-354313 ( 32) TATGGCCAAGTTGGTAAGGCG 1 chrXI:83970-84454 ( 51) GTTGGCCGAGTGGTCTAATGC 1 chrXV:663414-664258 ( 74) CGTGGTCTAGTCGGTTATGGC 1 chrX:378197-378297 ( 23) CGTGGTCTAGTCGGTTATGGC 1 chrXIII:586434-586905 ( 65) CGTGGTCTAGTCGGTTATGGC 1 chrVII:823345-823720 ( 5) CGTGGTCTAGTCGGTTATGGC 1 chrX:517650-517750 ( 35) CGTGGCGCAGTGGAAGCGCGC 1 chrIII:149618-150198 ( 67) CGTGGCGCAGTGGAAGCGCGC 1 chrXVI:338615-339174 ( 50) CGTGGCGCAGTGGAAGCGCGC 1 chrVII:440457-441140 ( 34) TTTAGCTCAGTTGGGAGAGCG 1 chrII:36237-36594 ( 38) TTTAGCTCAGTTGGGAGAGCG 1 chrVIII:358240-358796 ( 76) TTTAGCTCAGTTGGGAGAGCG 1 chrVIII:237752-238160 ( 8) TTTAGCTCAGTTGGGAGAGCG 1 chrVII:205307-205780 ( 33) TTTGGCCGAGCGGTCTAAGGC 1 chrVII:422851-423349 ( 47) TTTGGCCGAGCGGTCTAAGGC 1 chrX:422384-422484 ( 64) AGTAGCTCAGTAGGAAGAGCG 1 chrX:390861-390961 ( 31) AGTAGCTCAGTAGGAAGAGCG 1 chrIV:1175594-1176063 ( 56) AGTAGCTCAGTAGGAAGAGCG 1 chrIII:69-1031 ( 47) GGTAGTGGAGTTGGATACGGG 1 chrVII:661496-661968 ( 72) CTTAGCTTAGTGGTAGAGCGT 1 chrXVI:744090-744585 ( 2) CTTAGCTTAGTGGTAGAGCGT 1 chrVII:1003985-1004418 ( 70) CTTAGCTTAGTGGTAGAGCGT 1 chrXVI:860034-860691 ( 72) AGTGGTTTAGTGGTAAAATCC 1 chrXV:226426-226901 ( 43) AGTGGTTTAGTGGTAAAATCC 1 chrX:396589-396689 ( 16) AGTGGTTTAGTGGTAAAATCC 1 chrVIII:556581-556787 ( 25) GGTAGTGGAGTTGGATATGGG 1 chrXIII:747736-748203 ( 19) CGTGGCGTAATGGCAACGCGT 1 chrII:405600-406206 ( 30) CGTGGCGTAATGGCAACGCGT 1 chrVII:287166-287754 ( 20) GGTGGCTCAATGGTAGAGCTT 1 chrX:415735-415835 ( 71) GGTGGCTCAATGGTAGAGCTT 1 chrXIII:131574-132122 ( 73) CGTGGCGTAATGGCAACGCGT 1 chrVII:878558-879028 ( 47) GGTGGCTCAATGGTAGAGCTT 1 chrXI:302690-303195 ( 31) GGTGGCTCAATGGTAGAGCTT 1 chrI:138931-139370 ( 57) TGTGGTCTAGTGGTATGATTC 1 chrXIII:195930-196302 ( 79) TGTGGTCTAGTGGTATGATTC 1 chrII:642839-643254 ( 57) TATGGCGCAGTGGTAGCGCAG 1 chrIV:1256858-1257306 ( 22) AGTGGTTCAGTGGTTAGAATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCBYAGTKGKWWRRGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 11.3964 E= 5.1e-162 -149 119 19 -40 -149 -1283 132 42 -1283 -1283 -1283 170 -58 -1283 205 -1283 -1283 -1283 238 -1283 -1283 212 -1283 -90 -1283 128 36 -10 -190 128 0 -24 170 -1283 -1283 -1283 -58 -1283 205 -1283 -1283 -281 -1283 166 -290 -23 140 -10 -1283 -1283 238 -1283 -290 -223 136 46 10 -35 -149 55 68 -1283 -35 21 83 -35 65 -1283 60 -49 77 -217 -449 0 189 -190 -449 119 123 -168 -1283 110 114 -90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCBYAGTKGKWWRRGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 73 E= 5.1e-162 0.109589 0.438356 0.219178 0.232877 0.109589 0.000000 0.479452 0.410959 0.000000 0.000000 0.000000 1.000000 0.205479 0.000000 0.794521 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.835616 0.000000 0.164384 0.000000 0.465753 0.246575 0.287671 0.082192 0.465753 0.191781 0.260274 1.000000 0.000000 0.000000 0.000000 0.205479 0.000000 0.794521 0.000000 0.000000 0.027397 0.000000 0.972603 0.041096 0.164384 0.506849 0.287671 0.000000 0.000000 1.000000 0.000000 0.041096 0.041096 0.493151 0.424658 0.328767 0.150685 0.068493 0.452055 0.493151 0.000000 0.150685 0.356164 0.547945 0.150685 0.301370 0.000000 0.465753 0.136986 0.328767 0.068493 0.013699 0.191781 0.712329 0.082192 0.013699 0.438356 0.452055 0.095890 0.000000 0.410959 0.424658 0.164384 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCBYAGTKGKWWRRGSS MEME-2 regular expression -------------------------------------------------------------------------------- [CTG][GT]T[GA]GC[CTG][CT]A[GA]T[GT]G[GT][TA][AT][AG][AG]G[GC][GC] -------------------------------------------------------------------------------- Time 666.20 secs. ******************************************************************************** ******************************************************************************** MOTIF KATAGTGTARYGGYTAKCAYDKSMSSYT MEME-3 width = 28 sites = 24 llr = 581 E-value = 5.9e-096 ******************************************************************************** -------------------------------------------------------------------------------- Motif KATAGTGTARYGGYTAKCAYDKSMSSYT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :8:a::::a6:::::a:3a:4::5:::: pos.-specific C ::::::::::4::43::6:61155554: probability G 41::a:7::4:aa:::3:::333:55:: matrix T 51a::a3a::6::67:61:4262:::6a bits 2.4 ** 2.1 * ** 1.9 * ** 1.7 **** ** ** * * Relative 1.4 **** ** ** * * * * Entropy 1.2 **** ** ** * ** ** * (34.9 bits) 1.0 ************** *** **** 0.7 ******************* * ***** 0.5 ******************** ******* 0.2 **************************** 0.0 ---------------------------- Multilevel TATAGTGTAATGGTTATCACATCACGTT consensus G T GC CC GA TGGGCGCC sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATAGTGTARYGGYTAKCAYDKSMSSYT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chrV:176879-177402 + 14 1.47e-14 TTTGATCCGA TATAGTGTAACGGCTATCACATCACGCT TTCACCGTGG chrXIII:290550-291103 + 30 1.47e-14 TATAATCCGA TATAGTGTAACGGCTATCACATCACGCT TTCACCGTGG chrV:487063-487774 - 2 1.47e-14 TTTAATCCGA TATAGTGTAACGGCTATCACATCACGCT T chrIII:81778-83190 - 67 1.47e-14 ATCCGA TATAGTGTAACGGCTATCACATCACGCT TTCACCGTGG chrXI:140642-141453 - 60 1.47e-14 TGTAATCCGA TATAGTGTAACGGCTATCACATCACGCT TTCACCGTGG chrIX:370210-370612 + 61 1.47e-14 TATAATCCGA TATAGTGTAACGGCTATCACATCACGCT TTCACCGTGG chrIX:197337-197811 + 73 2.64e-13 TCAAATCCGA TGTAGTGTAACGGCTATCACATCACGTT chrIV:1016940-1017509 - 72 2.64e-13 A TGTAGTGTAACGGCTATCACATCACGTT CTCACCGTGG chrVIII:133941-134772 + 20 5.48e-13 GTTCCGGTCC TATAGTGTAGTGGTTATCACTTTCGGTT TTGATCCGGA chrXIII:807980-808554 - 68 5.48e-13 GGTCC TATAGTGTAGTGGTTATCACTTTCGGTT CTGATCCGAA chrIV:802549-803032 - 30 5.48e-13 TTGTCGGTCC TATAGTGTAGTGGTTATCACTTTCGGTT TTGATCCGGA chrV:130874-131364 - 52 5.48e-13 TAAGAGGTTT TATAGTGTAGTGGTTATCACTTTCGGTT TTGATCCGAA chrX:204544-204644 + 46 9.11e-12 AAAAATCCGT GATAGTTTAATGGTCAGAATGGGCGCTT GTCGCGTGCC chrIV:568657-569288 + 47 9.11e-12 TTTCTTCCGT GATAGTTTAATGGTCAGAATGGGCGCTT GTCGCGTGCC chrIX:336100-336634 - 71 9.11e-12 GT GATAGTTTAATGGTCAGAATGGGCGCTT GTCGCGTGCC chrVII:544399-544911 - 11 9.11e-12 TTTCTTCCGT GATAGTTTAATGGTCAGAATGGGCGCTT GTCGCGTGCC chrX:355177-355277 + 48 9.11e-12 TTTCTTCCGT GATAGTTTAATGGTCAGAATGGGCGCTT GTCGCGTGCC chrXI:513133-513591 - 59 9.11e-12 AACGTTCCGT GATAGTTTAATGGTCAGAATGGGCGCTT GTCGCGTGCC chrXII:426858-427441 + 38 9.11e-12 TCTTATCCGT GATAGTTTAATGGTCAGAATGGGCGCTT GTCGCGTGCC chrXV:110850-111192 - 30 1.74e-11 AACCCGGGCG GTTAGTGTAGTGGTTATCATCCCACCCT TCCAAGGTGG chrVII:779392-779926 + 12 1.74e-11 ACCCCGGGCG GTTAGTGTAGTGGTTATCATCCCACCCT TCCAAGGTGG chrIV:1075326-1075730 - 34 3.11e-11 ATATTGTTCC AATAGTGTAGCGGCTATCACGTTGCCTT CACACGGCAA chrVIII:62513-63058 + 25 5.62e-09 CATATGCCAT CTTAGTATAGTGGTTAGTACACATCGTT GTGGCCGATG chrVII:370472-372998 - 6 6.09e-09 TCCGAGGTTG TGTACTGTAGCGGTTTATACTTCAACCT GTGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATAGTGTARYGGYTAKCAYDKSMSSYT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:176879-177402 1.5e-14 13_[+3]_59 chrXIII:290550-291103 1.5e-14 29_[+3]_43 chrV:487063-487774 1.5e-14 1_[-3]_71 chrIII:81778-83190 1.5e-14 66_[-3]_6 chrXI:140642-141453 1.5e-14 59_[-3]_13 chrIX:370210-370612 1.5e-14 60_[+3]_12 chrIX:197337-197811 2.6e-13 72_[+3] chrIV:1016940-1017509 2.6e-13 71_[-3]_1 chrVIII:133941-134772 5.5e-13 19_[+3]_53 chrXIII:807980-808554 5.5e-13 67_[-3]_5 chrIV:802549-803032 5.5e-13 29_[-3]_43 chrV:130874-131364 5.5e-13 51_[-3]_21 chrX:204544-204644 9.1e-12 45_[+3]_27 chrIV:568657-569288 9.1e-12 46_[+3]_26 chrIX:336100-336634 9.1e-12 70_[-3]_2 chrVII:544399-544911 9.1e-12 10_[-3]_62 chrX:355177-355277 9.1e-12 47_[+3]_25 chrXI:513133-513591 9.1e-12 58_[-3]_14 chrXII:426858-427441 9.1e-12 37_[+3]_35 chrXV:110850-111192 1.7e-11 29_[-3]_43 chrVII:779392-779926 1.7e-11 11_[+3]_61 chrIV:1075326-1075730 3.1e-11 33_[-3]_39 chrVIII:62513-63058 5.6e-09 24_[+3]_48 chrVII:370472-372998 6.1e-09 5_[-3]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATAGTGTARYGGYTAKCAYDKSMSSYT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KATAGTGTARYGGYTAKCAYDKSMSSYT width=28 seqs=24 chrV:176879-177402 ( 14) TATAGTGTAACGGCTATCACATCACGCT 1 chrXIII:290550-291103 ( 30) TATAGTGTAACGGCTATCACATCACGCT 1 chrV:487063-487774 ( 2) TATAGTGTAACGGCTATCACATCACGCT 1 chrIII:81778-83190 ( 67) TATAGTGTAACGGCTATCACATCACGCT 1 chrXI:140642-141453 ( 60) TATAGTGTAACGGCTATCACATCACGCT 1 chrIX:370210-370612 ( 61) TATAGTGTAACGGCTATCACATCACGCT 1 chrIX:197337-197811 ( 73) TGTAGTGTAACGGCTATCACATCACGTT 1 chrIV:1016940-1017509 ( 72) TGTAGTGTAACGGCTATCACATCACGTT 1 chrVIII:133941-134772 ( 20) TATAGTGTAGTGGTTATCACTTTCGGTT 1 chrXIII:807980-808554 ( 68) TATAGTGTAGTGGTTATCACTTTCGGTT 1 chrIV:802549-803032 ( 30) TATAGTGTAGTGGTTATCACTTTCGGTT 1 chrV:130874-131364 ( 52) TATAGTGTAGTGGTTATCACTTTCGGTT 1 chrX:204544-204644 ( 46) GATAGTTTAATGGTCAGAATGGGCGCTT 1 chrIV:568657-569288 ( 47) GATAGTTTAATGGTCAGAATGGGCGCTT 1 chrIX:336100-336634 ( 71) GATAGTTTAATGGTCAGAATGGGCGCTT 1 chrVII:544399-544911 ( 11) GATAGTTTAATGGTCAGAATGGGCGCTT 1 chrX:355177-355277 ( 48) GATAGTTTAATGGTCAGAATGGGCGCTT 1 chrXI:513133-513591 ( 59) GATAGTTTAATGGTCAGAATGGGCGCTT 1 chrXII:426858-427441 ( 38) GATAGTTTAATGGTCAGAATGGGCGCTT 1 chrXV:110850-111192 ( 30) GTTAGTGTAGTGGTTATCATCCCACCCT 1 chrVII:779392-779926 ( 12) GTTAGTGTAGTGGTTATCATCCCACCCT 1 chrIV:1075326-1075730 ( 34) AATAGTGTAGCGGCTATCACGTTGCCTT 1 chrVIII:62513-63058 ( 25) CTTAGTATAGTGGTTAGTACACATCGTT 1 chrVII:370472-372998 ( 6) TGTACTGTAGCGGTTTATACTTCAACCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATAGTGTARYGGYTAKCAYDKSMSSYT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 43800 bayes= 11.2806 E= 5.9e-096 -288 -220 96 82 129 -1123 -62 -130 -1123 -1123 -1123 170 170 -1123 -1123 -1123 -1123 -220 232 -1123 -1123 -1123 -1123 170 -288 -1123 179 -8 -1123 -1123 -1123 170 170 -1123 -1123 -1123 102 -1123 96 -1123 -1123 112 -1123 92 -1123 -1123 238 -1123 -1123 -1123 238 -1123 -1123 96 -1123 102 -1123 60 -1123 120 164 -1123 -1123 -288 -288 -1123 79 102 -8 170 -1123 -188 170 -1123 -1123 -1123 -1123 170 -1123 29 29 -121 79 -56 -1123 -62 60 92 -288 125 60 -56 57 125 -220 -288 -288 138 125 -1123 -1123 125 149 -1123 -1123 96 -1123 102 -1123 -1123 -1123 170 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATAGTGTARYGGYTAKCAYDKSMSSYT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 24 E= 5.9e-096 0.041667 0.041667 0.375000 0.541667 0.750000 0.000000 0.125000 0.125000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.041667 0.958333 0.000000 0.000000 0.000000 0.000000 1.000000 0.041667 0.000000 0.666667 0.291667 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.625000 0.000000 0.375000 0.000000 0.000000 0.416667 0.000000 0.583333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.000000 0.625000 0.000000 0.291667 0.000000 0.708333 0.958333 0.000000 0.000000 0.041667 0.041667 0.000000 0.333333 0.625000 0.291667 0.625000 0.000000 0.083333 1.000000 0.000000 0.000000 0.000000 0.000000 0.625000 0.000000 0.375000 0.375000 0.083333 0.333333 0.208333 0.000000 0.125000 0.291667 0.583333 0.041667 0.458333 0.291667 0.208333 0.458333 0.458333 0.041667 0.041667 0.041667 0.500000 0.458333 0.000000 0.000000 0.458333 0.541667 0.000000 0.000000 0.375000 0.000000 0.625000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KATAGTGTARYGGYTAKCAYDKSMSSYT MEME-3 regular expression -------------------------------------------------------------------------------- [TG]ATAGT[GT]TA[AG][TC]GG[TC][TC]A[TG][CA]A[CT][AGT][TG][CGT][AC][CG][GC][TC]T -------------------------------------------------------------------------------- Time 973.84 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:326535-327123 1.13e-07 17_[+1(2.49e-09)]_15_[+1(1.95e-05)]_\ 26 chrVIII:125894-127504 6.30e-01 100 chrXIV:585424-586386 4.34e-01 100 chrVI:222732-224153 4.62e-01 100 chrXI:259137-259881 1.50e-01 100 chrI:180937-181464 6.79e-03 78_[-1(1.82e-06)]_1 chrIV:1256858-1257306 8.45e-06 14_[-3(1.35e-06)]_58 chrXVI:819305-819848 3.09e-12 7_[+2(8.36e-11)]_22_[-1(5.81e-09)]_\ 29 chrXIII:480414-480825 1.49e-04 56_[+1(1.28e-07)]_23 chrVII:422851-423349 8.15e-04 46_[+2(1.19e-07)]_33 chrVII:319241-320114 1.09e-01 100 chrXI:364505-365201 3.97e-01 100 chrIV:555409-556614 5.96e-02 100 chrIII:142365-142977 9.95e-01 100 chrXVI:302597-304478 7.12e-01 100 chrIV:980741-981218 1.29e-04 49_[+1(8.01e-08)]_30 chrXI:518877-519169 9.01e-01 100 chrIX:316111-316616 9.34e-02 100 chrXIV:374708-375100 3.17e-08 19_[+2(3.04e-08)]_39_[-1(3.54e-07)] chrIV:884266-884619 2.94e-04 75_[-1(5.95e-08)]_4 chrXII:348120-348709 9.86e-01 100 chrII:181325-181679 7.04e-01 100 chrI:71770-73700 6.14e-01 100 chrXI:457888-458975 7.69e-01 100 chrXV:1025715-1026193 8.16e-01 100 chrVII:370472-372998 5.90e-06 5_[-3(6.09e-09)]_67 chrXV:505025-505505 3.96e-01 100 chrXII:86876-87219 1.15e-01 100 chrVII:806175-808166 5.57e-01 100 chrXV:639151-639491 2.66e-01 100 chrXIII:91394-92090 9.60e-02 100 chrV:117565-118325 4.63e-01 100 chrXVI:572044-572702 5.50e-01 100 chrIII:13989-15158 5.46e-01 100 chrIV:758445-759642 9.96e-01 100 chrXV:444620-446201 3.84e-01 100 chrIV:913974-916253 5.20e-01 100 chrXIII:651568-652965 7.92e-01 100 chrVI:226417-227282 1.84e-01 100 chrXII:673493-674239 2.12e-01 100 chrVIII:296635-297279 5.27e-01 100 chrX:542781-542881 3.74e-02 41_[-2(4.95e-05)]_38 chrVII:328391-329244 5.81e-01 100 chrVIII:451219-453124 3.97e-01 100 chrXII:805769-807116 3.74e-01 100 chrXIII:195930-196302 2.28e-09 6_[+1(6.63e-09)]_51_[-2(1.13e-06)]_\ 1 chrXIV:6800-7018 1.68e-02 100 chrXIV:560293-560864 6.15e-01 100 chrVII:411962-412577 2.69e-05 79_[+1(1.58e-09)] chrXVI:775631-776140 9.24e-01 100 chrXII:1051909-1052216 2.63e-05 63_[+1(5.81e-09)]_16 chrIX:174659-175618 9.98e-01 100 chrXV:353899-354313 1.51e-04 31_[-2(3.81e-08)]_48 chrXIII:183793-183961 1.31e-06 75_[+1(6.75e-11)]_4 chrVII:882426-883963 1.76e-01 100 chrXI:666440-666777 3.29e-01 100 chrX:424278-424378 4.46e-06 44_[-2(2.06e-09)]_35 chrIII:69-1031 8.51e-06 14_[-3(8.26e-05)]_4_[-2(3.47e-07)]_\ 33 chrXVI:188639-188935 3.15e-02 100 chrVI:167252-167694 1.70e-05 18_[+2(4.95e-05)]_37_[-1(4.80e-07)]_\ 3 chrXI:430796-431662 3.87e-01 100 chrXII:796393-797798 6.82e-01 100 chrXII:92266-93013 1.62e-05 35_[-1(6.63e-09)]_44 chrXI:162048-162740 4.84e-01 100 chrV:311723-312293 3.93e-05 69_[+1(3.33e-09)]_10 chrIV:1095135-1095656 6.46e-04 29_[+1(3.54e-07)]_50 chrVII:310418-312454 6.71e-01 100 chrXIII:302840-303409 3.60e-01 100 chrXIII:873350-874171 5.39e-01 100 chrXIII:67681-68059 8.73e-01 100 chrXII:498342-499912 6.82e-01 100 chrVIII:62513-63058 3.58e-09 24_[+3(5.62e-09)]_13_[-1(4.13e-07)]_\ 14 chrXI:302690-303195 3.55e-03 30_[+2(8.61e-07)]_49 chrXII:11252-11506 6.86e-02 100 chrXII:962775-963312 2.59e-06 36_[-2(2.06e-09)]_43 chrXVI:208374-210583 9.42e-01 100 chrV:424541-425221 8.73e-02 23_[+3(7.94e-05)]_49 chrXII:426858-427441 1.85e-14 37_[+3(9.11e-12)]_13_[-1(2.54e-08)]_\ 1 chrIV:1305379-1306390 9.61e-01 100 chrXII:232119-234241 2.35e-01 100 chrVII:345884-346649 2.11e-01 100 chrXVI:435623-436192 1.60e-04 40_[+1(1.53e-07)]_39 chrVI:180628-181259 7.50e-01 100 chrXIV:568054-568562 9.16e-01 100 chrVII:878558-879028 3.17e-03 46_[-2(8.61e-07)]_33 chrXII:424153-424520 8.68e-01 100 chrXVI:338615-339174 6.94e-07 8_[+1(1.82e-06)]_20_[-2(7.26e-08)]_\ 30 chrXII:920067-923603 8.16e-01 100 chrXV:853642-854810 2.34e-11 15_[+1(3.33e-09)]_21_[-2(5.05e-09)]_\ 22 chrVIII:174651-175758 3.26e-01 100 chrVII:254106-254733 7.18e-01 100 chrXI:258724-258932 3.85e-01 100 chrXV:976275-976687 8.79e-04 36_[-1(1.83e-07)]_43 chrIII:168078-168536 9.12e-06 48_[+1(6.97e-10)]_31 chrXV:31055-31777 4.60e-01 100 chrII:350589-351022 1.79e-01 100 chrIII:315611-316589 1.68e-01 100 chrXII:567961-570342 6.80e-01 100 chrXVI:810580-811283 6.61e-01 100 chrX:58688-58788 8.09e-01 100 chrVI:162014-162387 3.28e-01 100 chrXII:201670-202776 1.46e-02 61_[-1(2.78e-05)]_18 chrXVI:622270-622865 1.90e-03 27_[+1(1.11e-06)]_52 chrII:415569-416126 4.42e-01 100 chrXII:416447-417132 8.26e-01 100 chrIII:137758-139021 6.24e-01 100 chrIII:15319-16933 7.24e-01 100 chrXVI:879593-880561 4.95e-01 100 chrXIII:131574-132122 4.82e-08 31_[+1(2.26e-08)]_20_[-2(8.61e-07)]_\ 7 chrXIV:738612-740752 9.36e-01 100 chrXIII:168246-169034 8.93e-01 100 chrIX:386685-386873 2.23e-01 100 chrIV:437538-438212 4.28e-04 2_[-1(8.01e-08)]_77 chrVII:277025-278705 4.20e-01 100 chrV:269200-270132 1.77e-01 100 chrIV:1005208-1005708 1.61e-01 100 chrIII:151130-151615 9.76e-05 8_[-2(2.40e-08)]_71 chrXII:975731-976188 3.12e-04 78_[+1(1.83e-07)]_1 chrIX:370210-370612 4.58e-10 60_[+3(1.47e-14)]_12 chrXV:274469-274991 4.31e-05 67_[-1(6.58e-08)]_12 chrIV:488412-489133 2.52e-05 79_[+1(2.49e-09)] chrXIII:625846-627146 8.31e-02 100 chrVIII:475483-475908 1.53e-05 65_[+1(9.76e-10)]_14 chrIV:1201535-1202036 9.95e-09 19_[+2(2.40e-08)]_21_[-1(1.28e-07)]_\ 18 chrVI:4596-4757 7.89e-01 100 chrVII:730961-731425 3.67e-04 41_[-1(1.83e-07)]_38 chrIV:578813-580697 6.20e-02 100 chrXIII:760395-763130 8.62e-01 100 chrXV:758898-759524 6.16e-01 100 chrXI:74400-74875 7.55e-05 41_[+2(1.89e-08)]_38 chrVII:823345-823720 5.48e-10 4_[+2(5.89e-08)]_22_[-1(1.58e-09)]_\ 32 chrX:663691-663791 3.14e-01 100 chrII:604059-607101 2.20e-01 100 chrXII:374202-374776 7.47e-01 100 chrII:165059-165462 2.00e-01 100 chrXIII:672524-674780 2.56e-01 100 chrXIV:413560-414937 4.39e-01 100 chrIX:248607-249253 1.83e-03 25_[-1(2.36e-07)]_54 chrVII:774105-774620 1.32e-06 41_[+2(7.67e-09)]_38 chrXII:65318-65687 3.64e-01 100 chrXI:558669-559463 4.36e-01 100 chrV:469183-470300 2.26e-01 100 chrXII:167719-168245 2.56e-11 16_[+1(8.01e-08)]_30_[-2(1.03e-10)]_\ 12 chrXV:505766-506767 7.72e-01 100 chrX:745018-745118 3.37e-01 100 chrIX:183307-183713 1.09e-06 27_[-2(8.36e-11)]_52 chrVII:738888-739589 4.54e-01 100 chrXI:140642-141453 2.15e-16 25_[+1(9.76e-10)]_13_[-3(1.47e-14)]_\ 13 chrII:45611-46808 9.87e-01 100 chrVIII:381456-382449 1.74e-01 34_[-3(9.48e-05)]_38 chrXIII:914317-917140 5.04e-01 100 chrVIII:237752-238160 2.73e-04 7_[-2(8.90e-08)]_72 chrXIII:504912-505268 2.18e-01 100 chrXIII:161979-162669 4.53e-01 100 chrX:90060-90160 7.79e-01 100 chrV:492211-492552 1.07e-09 25_[+1(1.53e-07)]_21_[-2(2.06e-09)]_\ 12 chrVII:828412-828999 2.04e-04 72_[+1(2.26e-08)]_7 chrX:415735-415835 3.14e-03 70_[-2(8.61e-07)]_9 chrXVI:378646-378990 2.53e-01 100 chrXII:605141-605616 6.66e-07 78_[-2(3.41e-08)]_1 chrIII:78424-78851 1.72e-01 100 chrXIII:320977-321331 5.82e-04 47_[+1(1.99e-07)]_32 chrII:59812-61594 2.62e-01 100 chrVII:555088-557496 9.12e-01 100 chrIV:1075326-1075730 4.68e-10 1_[-1(6.34e-05)]_11_[-3(3.11e-11)]_\ 39 chrXII:566398-567264 3.77e-01 100 chrXIII:159283-160115 2.10e-01 100 chrVIII:554122-554710 5.43e-01 100 chrXI:158223-159648 3.73e-01 100 chrIV:619729-620234 7.69e-04 42_[+1(1.53e-07)]_37 chrX:540643-540743 5.64e-01 100 chrXV:109571-110674 5.01e-01 100 chrIX:210514-211308 2.00e-01 100 chrXIV:104603-105748 8.73e-01 100 chrVIII:556581-556787 2.61e-06 24_[+2(8.03e-07)]_4_[+3(5.59e-06)]_\ 23 chrIV:465216-465526 7.02e-01 100 chrXI:83970-84454 1.15e-04 50_[+2(5.30e-08)]_29 chrXIV:498859-500757 5.64e-01 100 chrXI:46716-47003 7.71e-01 100 chrII:44893-45370 9.11e-01 100 chrIV:218314-218809 7.90e-02 100 chrXVI:821653-822239 9.03e-01 100 chrVII:110308-110784 6.42e-01 100 chrV:51847-53260 8.32e-01 100 chrI:182335-183203 5.68e-03 100 chrXV:514196-514715 8.90e-01 100 chrXI:457418-457732 8.13e-01 100 chrIV:1175594-1176063 2.45e-04 55_[+2(2.27e-07)]_24 chrXI:67643-68807 3.79e-01 100 chrXII:780645-781887 5.68e-02 42_[+2(6.50e-05)]_37 chrIX:98203-99456 5.73e-01 100 chrVIII:375414-376039 2.38e-01 100 chrIV:322200-323628 4.25e-01 100 chrII:255084-255742 8.54e-01 100 chrXV:1027768-1029410 3.92e-01 100 chrV:354673-355375 1.16e-05 5_[-1(9.76e-10)]_74 chrIV:1016940-1017509 3.32e-16 37_[+1(1.04e-10)]_13_[-3(2.64e-13)]_\ 1 chrI:142152-143554 3.31e-01 100 chrX:157455-157555 6.09e-01 100 chrIV:1490111-1490378 5.85e-01 100 chrXV:28419-30854 1.35e-02 3_[-3(8.59e-05)]_69 chrXIII:886989-889090 3.03e-01 100 chrXIII:267083-268318 4.28e-01 100 chrIII:123352-123801 3.20e-07 55_[+1(2.66e-11)]_24 chrIV:601216-602297 7.66e-01 100 chrVI:64022-65378 9.81e-01 100 chrIII:57368-59007 4.00e-01 100 chrV:422731-424340 7.97e-01 100 chrVII:845450-846034 8.77e-07 1_[-1(6.75e-11)]_78 chrXIV:575197-576437 3.69e-01 100 chrXVI:559958-560283 9.93e-01 100 chrIV:1013751-1013946 8.81e-01 100 chrXVI:406203-407780 9.15e-01 100 chrV:78103-79485 5.75e-01 100 chrXV:216285-216719 4.79e-01 100 chrV:140172-141248 9.12e-01 100 chrXIII:145858-147212 4.56e-01 100 chrIV:519655-520164 8.99e-01 100 chrXII:369647-370267 5.84e-01 100 chrII:477028-477754 4.36e-01 100 chrXIII:768189-768441 8.82e-01 100 chrXI:513133-513591 1.85e-14 24_[+1(2.54e-08)]_13_[-3(9.11e-12)]_\ 14 chrXVI:654081-655029 9.89e-01 100 chrXV:988753-989448 2.20e-01 100 chrIV:835746-836305 1.72e-01 100 chrIV:1080446-1080721 6.39e-02 100 chrVII:519405-520900 3.62e-01 100 chrXII:932060-932526 6.38e-01 100 chrIV:1401038-1403374 1.57e-01 100 chrIII:90859-91103 4.25e-03 15_[-1(1.82e-06)]_64 chrVII:914854-915365 1.94e-01 100 chrXV:877412-878018 7.96e-01 100 chrVII:1003985-1004418 1.10e-04 69_[+2(4.41e-07)]_10 chrXV:710125-710669 2.81e-01 100 chrV:138445-140001 6.69e-01 100 chrII:612268-613950 3.19e-01 100 chrXIII:378840-379610 7.18e-01 100 chrVII:876130-878106 7.29e-01 100 chrII:680355-682266 7.68e-01 100 chrXIV:241393-241797 9.56e-01 100 chrXII:241591-242049 5.49e-01 100 chrIV:358043-358409 6.11e-01 100 chrXI:282811-284774 1.66e-01 100 chrVII:438529-439889 8.21e-01 100 chrIV:1233287-1234322 8.62e-01 100 chrVII:779392-779926 8.57e-14 11_[+3(1.74e-11)]_13_[-1(9.77e-09)]_\ 27 chrIII:149618-150198 3.14e-04 66_[+2(7.26e-08)]_13 chrX:374179-374279 2.22e-06 2_[-2(2.77e-05)]_20_[+1(2.26e-08)]_\ 36 chrXV:487434-487725 8.07e-01 100 chrXI:379694-380270 5.22e-01 100 chrXII:97203-97835 6.94e-01 100 chrVII:648765-649355 8.38e-01 100 chrXII:783882-784512 6.41e-01 100 chrXIII:253365-253602 8.83e-01 100 chrXIII:162970-164313 9.96e-01 100 chrX:531569-531669 3.64e-07 34_[-1(6.75e-11)]_45 chrXVI:744090-744585 7.49e-07 1_[+2(4.41e-07)]_20_[-1(1.43e-06)]_\ 37 chrIV:205390-206424 2.46e-01 100 chrIV:410174-410793 7.78e-01 100 chrXIII:296763-298902 5.26e-01 100 chrXV:464275-464823 1.62e-05 26_[-1(6.63e-09)]_53 chrV:441761-442648 5.06e-02 100 chrXV:1003935-1004967 5.90e-01 100 chrXV:1026438-1026593 3.11e-01 100 chrXIII:306510-306886 9.06e-01 100 chrV:550950-551700 3.09e-12 14_[+1(5.81e-09)]_22_[-2(8.36e-11)]_\ 22 chrII:266173-266702 5.76e-04 37_[-1(9.70e-08)]_42 chrXIII:861168-861386 6.18e-01 100 chrXIV:576720-577678 9.75e-01 100 chrXVI:689131-689856 8.93e-01 100 chrIV:490660-491270 5.71e-01 100 chrVII:287166-287754 2.54e-03 19_[-2(8.61e-07)]_60 chrXIII:586434-586905 7.02e-10 21_[+1(1.58e-09)]_22_[-2(5.89e-08)]_\ 15 chrIII:30530-31101 6.81e-01 100 chrXVI:75057-76789 6.46e-02 14_[+2(7.47e-05)]_65 chrVIII:145787-146465 3.84e-01 100 chrVII:999724-999946 5.26e-01 100 chrVII:609334-610142 7.34e-01 100 chrV:130874-131364 1.58e-15 17_[+1(3.33e-09)]_13_[-3(5.48e-13)]_\ 21 chrIV:974383-974667 6.88e-01 100 chrV:396771-397949 8.33e-01 100 chrXV:79747-80147 6.98e-01 100 chrXII:897663-899677 9.79e-01 100 chrX:414711-414811 9.76e-05 42_[+2(2.40e-08)]_37 chrIV:1359221-1361115 3.93e-01 100 chrXV:92742-94785 8.32e-01 100 chrXI:107452-110144 3.21e-01 100 chrXII:211581-212588 8.49e-01 100 chrV:85101-86968 4.65e-01 100 chrIII:81778-83190 2.15e-16 32_[+1(9.76e-10)]_13_[-3(1.47e-14)]_\ 6 chrIII:227753-228491 4.45e-01 100 chrXIV:619769-620014 4.14e-01 100 chrV:305813-307446 1.34e-02 100 chrV:69074-69349 4.84e-02 100 chrX:378197-378297 7.76e-10 22_[+2(5.89e-08)]_22_[-1(1.58e-09)]_\ 14 chrXIII:259021-259479 6.69e-07 13_[-2(1.03e-10)]_66 chrVII:148068-149538 6.10e-01 100 chrXV:663414-664258 7.76e-10 30_[+1(1.58e-09)]_22_[-2(5.89e-08)]_\ 6 chrII:332253-333034 4.59e-01 100 chrXV:159254-160150 3.51e-01 100 chrII:302001-302171 3.49e-01 100 chrXII:262551-263993 5.34e-01 100 chrXIII:352046-353251 6.82e-03 18_[-1(4.99e-05)]_61 chrXI:219659-220127 1.32e-06 56_[+2(7.67e-09)]_23 chrV:430975-431951 9.99e-01 100 chrII:226978-227337 1.41e-04 23_[-1(8.01e-08)]_56 chrXII:837665-839406 4.35e-01 100 chrII:347390-347914 4.93e-10 5_[+2(2.06e-09)]_32_[-1(3.53e-08)]_\ 21 chrXIII:772930-773787 3.03e-01 100 chrIX:254217-254577 6.52e-01 100 chrIV:382035-384785 8.04e-03 100 chrX:396589-396689 1.02e-03 15_[-2(6.95e-07)]_64 chrIV:340348-341650 1.15e-01 100 chrXIII:572558-573165 6.49e-04 76_[+1(1.83e-07)]_3 chrXIV:725588-726339 6.35e-01 100 chrXIV:302608-303747 6.19e-01 100 chrVII:533878-535201 4.47e-01 100 chrXII:39218-40228 7.98e-01 100 chrXII:459602-460729 1.66e-01 100 chrVII:115329-115734 9.22e-12 11_[+2(1.30e-08)]_44_[-1(3.84e-09)]_\ 3 chrX:390861-390961 2.27e-04 30_[-2(2.27e-07)]_49 chrXII:903169-904369 8.43e-01 100 chrXII:656834-657214 7.56e-06 6_[-2(7.67e-09)]_73 chrXIV:392379-392719 9.60e-01 100 chrV:435628-436073 8.09e-01 100 chrVII:661496-661968 6.55e-04 71_[+2(4.41e-07)]_8 chrXII:370517-370906 9.90e-01 100 chrVII:397952-398377 1.21e-01 100 chrXV:253798-254122 9.00e-01 100 chrXIV:715849-716636 9.99e-01 100 chrV:288149-288746 1.04e-03 50_[+1(2.36e-07)]_29 chrVI:210440-211183 6.60e-01 100 chrVII:205307-205780 1.06e-03 32_[+2(1.19e-07)]_47 chrIV:321638-321938 7.89e-01 100 chrII:405600-406206 4.82e-08 29_[+2(8.61e-07)]_20_[-1(2.26e-08)]_\ 9 chrX:355177-355277 1.66e-14 6_[-1(2.26e-08)]_20_[+3(9.11e-12)]_\ 25 chrXIV:172599-174666 8.09e-01 100 chrXV:968119-968674 8.35e-01 100 chrVIII:358240-358796 1.88e-07 14_[+1(1.11e-06)]_40_[-2(8.90e-08)]_\ 4 chrIX:255104-257079 4.63e-01 100 chrXIV:61934-64552 7.44e-01 100 chrXIII:463319-463977 2.16e-04 1_[-1(2.54e-08)]_78 chrVIII:388648-389004 8.46e-01 100 chrIV:411202-411688 1.05e-01 63_[-2(6.73e-05)]_16 chrX:227742-227842 6.70e-01 100 chrX:115465-115565 2.50e-01 100 chrXVI:718394-719509 5.93e-01 100 chrVII:640776-641774 6.61e-01 100 chrII:36237-36594 2.89e-04 37_[+2(8.90e-08)]_42 chrXIV:632421-632834 2.20e-08 26_[+2(1.89e-08)]_22_[-1(1.83e-07)]_\ 10 chrIV:1449841-1451456 9.72e-01 100 chrIV:45199-46142 2.40e-01 100 chrIV:946148-946632 9.22e-04 34_[-1(4.80e-07)]_45 chrV:460520-462220 6.64e-01 100 chrXV:779678-780982 8.30e-01 100 chrII:9369-9899 4.93e-10 3_[+2(2.06e-09)]_32_[-1(3.53e-08)]_\ 23 chrII:642839-643254 6.88e-07 15_[+1(1.53e-07)]_20_[-2(2.11e-06)]_\ 23 chrI:141551-141904 4.11e-01 100 chrVII:700219-701264 1.06e-05 39_[-1(5.38e-08)]_40 chrXV:281962-283050 4.46e-02 100 chrX:197146-197246 3.28e-04 74_[+1(1.99e-07)]_5 chrXI:334062-335001 7.99e-01 100 chrXV:438419-439012 2.38e-05 47_[-1(3.84e-09)]_32 chrXVI:785677-786118 6.85e-01 100 chrIV:644926-645378 1.92e-06 55_[+1(6.97e-10)]_24 chrIX:68185-68498 2.31e-01 100 chrVI:221727-222231 5.91e-01 100 chrII:88952-90003 2.93e-01 100 chrXV:160348-160722 9.26e-01 100 chrIV:667709-668213 8.50e-01 100 chrXV:619679-624445 1.51e-01 100 chrXII:440440-441475 2.29e-01 100 chrX:517650-517750 6.83e-04 34_[-2(7.26e-08)]_45 chrIX:99612-100125 5.25e-01 100 chrVIII:74803-75921 1.98e-01 100 chrXV:226426-226901 1.24e-10 2_[+1(6.75e-11)]_19_[-2(6.95e-07)]_\ 37 chrV:487063-487774 1.17e-10 1_[-3(1.47e-14)]_71 chrXV:252915-253630 4.23e-01 100 chrXII:628189-628788 1.42e-03 33_[-1(1.82e-06)]_46 chrIV:83433-83802 4.75e-07 25_[-1(6.75e-11)]_54 chrXIII:747736-748203 2.46e-03 18_[-2(8.61e-07)]_61 chrXII:731230-732333 6.99e-01 100 chrX:233700-233800 2.22e-10 34_[+2(2.06e-09)]_21_[-1(2.84e-08)]_\ 3 chrV:270367-270655 9.86e-01 100 chrVII:930508-931656 1.00e+00 100 chrXIII:872704-872938 1.34e-01 100 chrXVI:172912-174142 9.83e-01 100 chrVII:440457-441140 3.47e-04 33_[-2(8.90e-08)]_46 chrXIII:732003-733361 3.37e-01 100 chrIV:83959-84162 7.31e-02 100 chrXI:326107-327538 5.17e-02 100 chrXIV:88920-89712 9.87e-01 100 chrXII:645822-646152 4.54e-01 100 chrXVI:794258-796071 9.04e-01 100 chrI:166174-166598 1.59e-01 100 chrXIII:225322-226705 2.17e-01 100 chrVII:364884-366683 9.86e-01 100 chrIII:295313-296031 2.98e-01 100 chrIV:1461441-1461841 1.73e-01 100 chrXIII:837691-838386 8.51e-04 2_[-1(4.80e-07)]_77 chrXI:333535-333700 4.61e-01 100 chrVIII:20838-21526 6.99e-01 100 chrXV:866518-868103 8.45e-01 100 chrV:396146-396579 9.97e-01 100 chrXIV:631684-632208 9.36e-01 100 chrXV:300872-301713 9.35e-01 100 chrX:391802-391902 7.65e-01 100 chrXII:253234-255524 9.00e-02 1_[+1(8.61e-05)]_78 chrXV:161087-161750 8.35e-01 100 chrVII:122042-123224 7.61e-01 100 chrXII:793699-795412 1.71e-01 100 chrV:442989-443380 4.58e-05 72_[+1(5.81e-09)]_7 chrVII:544399-544911 1.42e-09 10_[-3(9.11e-12)]_62 chrIV:520685-521162 7.66e-01 100 chrXII:1028168-1028607 7.34e-01 100 chrXI:490743-491211 7.21e-06 45_[+2(2.06e-09)]_34 chrIX:257340-258156 5.75e-02 100 chrXV:110850-111192 7.00e-09 29_[-3(1.74e-11)]_43 chrVI:191277-191784 4.04e-04 37_[+1(6.58e-08)]_42 chrII:256145-257274 7.59e-01 100 chrXI:519330-521056 8.16e-01 100 chrVII:401414-401614 1.27e-05 67_[+1(9.76e-10)]_12 chrXIV:331858-332285 5.03e-01 100 chrIX:323602-324383 3.83e-01 100 chrXI:578755-579399 1.60e-05 7_[-1(3.84e-09)]_72 chrX:523806-523906 2.89e-07 30_[-2(1.03e-10)]_49 chrV:41928-42651 5.09e-01 100 chrV:362154-362484 5.28e-01 100 chrXIII:372203-372662 1.54e-05 67_[+1(1.58e-09)]_12 chrXIV:95981-96508 6.98e-05 51_[+1(9.77e-09)]_28 chrII:167741-168586 2.91e-01 100 chrVIII:504745-505092 1.65e-01 100 chrXVI:404501-405988 7.96e-01 100 chrXVI:519774-520547 3.85e-01 100 chrXII:818501-820429 3.67e-01 100 chrIV:1351881-1353440 9.51e-01 100 chrIII:107189-107822 5.05e-01 100 chrIV:992693-993281 8.69e-01 100 chrXIV:102578-103187 4.49e-01 100 chrXVI:860034-860691 7.94e-04 71_[+2(6.95e-07)]_8 chrIV:229444-230749 8.57e-01 100 chrIV:1489092-1489927 8.46e-01 100 chrXV:571658-572135 8.41e-01 100 chrIX:325745-326167 3.46e-01 100 chrXI:617638-619363 9.62e-01 100 chrXIII:219527-220873 6.40e-01 100 chrXV:287887-288453 8.95e-02 76_[+2(4.95e-05)]_3 chrVII:282-2314 4.47e-01 100 chrXII:366060-366537 2.10e-01 100 chrX:538030-538130 1.94e-01 100 chrVI:95412-95934 1.75e-01 100 chrV:438338-438966 8.00e-01 100 chrVII:405461-405964 1.92e-01 100 chrIV:217167-218044 9.09e-01 100 chrXI:382176-382463 2.33e-01 100 chrIX:336100-336634 1.85e-14 36_[+1(2.54e-08)]_13_[-3(9.11e-12)]_\ 2 chrVII:479098-482882 4.28e-01 100 chrVI:157845-158243 8.29e-01 100 chrIV:1269907-1271372 8.62e-01 100 chrXV:113497-113883 5.26e-01 100 chrXII:710663-710892 4.59e-01 100 chrV:53500-53941 4.43e-01 100 chrXIII:754445-755080 7.12e-01 100 chrV:491131-491367 1.16e-01 100 chrX:651233-651333 8.68e-01 100 chrXIII:498970-500760 3.76e-02 100 chrIV:128939-130986 1.38e-01 100 chrIII:177031-178797 8.25e-01 100 chrXIV:493563-495650 6.43e-01 100 chrXII:198349-199715 4.41e-01 100 chrII:644812-645412 5.16e-01 100 chrXII:951013-953448 3.59e-01 100 chrVIII:103504-105478 7.40e-02 100 chrIII:163450-163902 1.32e-01 100 chrXVI:279934-280214 9.12e-01 100 chrXV:167964-168467 1.21e-01 100 chrX:120465-120565 5.01e-02 100 chrX:354017-354117 1.13e-01 68_[+2(4.95e-05)]_11 chrIX:231286-232382 7.04e-01 100 chrVII:968878-969106 1.03e-01 100 chrXII:522159-522421 9.74e-01 100 chrXII:636729-639946 1.54e-01 100 chrXIII:387399-390680 8.91e-01 100 chrXIII:752996-754188 3.93e-01 100 chrIV:802549-803032 1.06e-10 29_[-3(5.48e-13)]_43 chrXVI:828994-829379 6.06e-03 25_[-1(1.43e-06)]_54 chrII:301134-301654 3.69e-01 100 chrII:87937-88583 6.07e-01 100 chrX:617716-617816 4.97e-07 48_[+2(1.47e-09)]_31 chrXI:307880-308428 1.59e-05 44_[+1(1.58e-09)]_35 chrX:651879-651979 1.43e-01 100 chrXIII:170374-171324 5.20e-01 100 chrXII:47295-49217 2.97e-01 100 chrXVI:699788-700630 9.67e-01 100 chrVIII:466833-467269 6.31e-04 34_[-1(3.54e-07)]_45 chrXV:978754-979173 7.10e-01 100 chrXIII:290550-291103 2.15e-16 29_[+3(1.47e-14)]_13_[-1(9.76e-10)]_\ 9 chrXV:979761-981093 1.69e-01 100 chrXVI:678535-679353 4.82e-01 100 chrXIV:330433-331111 8.61e-01 100 chrXI:202226-203292 3.62e-01 100 chrV:61059-62180 3.48e-01 100 chrIX:83417-84871 4.99e-01 100 chrX:139097-139197 9.68e-01 100 chrXII:282585-283926 7.45e-01 100 chrXV:594235-594686 8.96e-01 100 chrVIII:411011-411682 4.83e-01 100 chrXII:214672-215064 4.10e-05 69_[+1(3.33e-09)]_10 chrXVI:581839-582479 7.75e-01 100 chrIV:434012-435143 7.83e-01 100 chrVII:736196-736657 5.85e-05 9_[-1(2.26e-08)]_70 chrXI:312630-314040 2.70e-01 100 chrI:138931-139370 9.82e-05 56_[+2(1.13e-06)]_23 chrXIV:229641-230811 8.11e-01 100 chrVII:1000356-1000606 1.69e-01 100 chrIV:538998-539233 2.36e-01 100 chrXIV:525070-525327 8.00e-01 100 chrVII:706912-707185 9.99e-01 100 chrII:592288-593450 5.64e-01 100 chrVIII:382683-383366 4.85e-01 100 chrVII:787345-788720 4.03e-02 58_[+3(1.58e-05)]_14 chrV:434391-435209 1.25e-02 100 chrXII:515138-516881 1.65e-01 100 chrXII:734550-734985 2.20e-01 100 chrXII:713158-713685 8.68e-01 100 chrXIV:442792-445019 6.02e-02 100 chrIV:541239-541896 7.37e-01 100 chrIX:300009-300524 9.95e-09 16_[+1(1.28e-07)]_21_[-2(2.40e-08)]_\ 21 chrXIII:807980-808554 2.14e-16 33_[+1(4.11e-10)]_13_[-3(5.48e-13)]_\ 5 chrIV:216591-216967 6.57e-01 100 chrXIII:420328-420870 5.34e-06 43_[+1(1.58e-09)]_36 chrXIV:783476-784323 3.45e-01 100 chrXV:340146-340613 5.55e-06 16_[-2(2.06e-09)]_63 chrXII:592334-592986 4.04e-01 100 chrVII:794167-794512 5.78e-01 100 chrXIV:518727-519140 9.63e-03 66_[-1(8.32e-05)]_13 chrXI:517785-518125 6.26e-01 100 chrIV:1300377-1301349 3.91e-01 100 chrVIII:133941-134772 3.55e-16 19_[+3(5.48e-13)]_13_[-1(6.97e-10)]_\ 19 chrX:422384-422484 8.04e-04 63_[+2(2.27e-07)]_16 chrVI:136585-137702 7.47e-01 100 chrVI:75212-75904 3.09e-01 100 chrIV:1236464-1238505 9.00e-01 100 chrVII:856695-857670 2.28e-01 100 chrVII:516354-518967 4.72e-01 100 chrXV:925214-925407 1.55e-01 100 chrXII:874890-875618 2.08e-01 100 chrXVI:280588-282960 9.57e-01 100 chrX:607895-607995 3.92e-01 100 chrXVI:731617-732294 6.27e-01 100 chrXI:99737-100002 5.67e-01 100 chrXIV:721976-723174 4.98e-01 100 chrIV:14-330 4.99e-02 100 chrIV:1150736-1151171 7.90e-06 12_[-2(8.85e-10)]_67 chrVI:100982-102133 6.48e-01 100 chrIII:127581-127890 2.56e-08 35_[+2(1.89e-08)]_22_[-1(1.83e-07)]_\ 1 chrIV:765092-765610 2.43e-01 100 chrXIV:546538-547360 1.10e-01 100 chrXVI:856722-857131 1.56e-10 30_[+2(7.67e-09)]_21_[-1(1.99e-07)]_\ 7 chrV:99864-100338 2.34e-01 100 chrIV:1355740-1356084 8.05e-01 100 chrVIII:115936-116416 6.25e-05 27_[-2(3.81e-08)]_52 chrIX:394821-395192 4.08e-01 100 chrIV:568657-569288 1.66e-14 5_[-1(2.26e-08)]_20_[+3(9.11e-12)]_\ 26 chrI:81830-82315 3.37e-01 100 chrXII:1017835-1019557 6.65e-01 100 chrXV:228073-228565 1.53e-04 66_[+2(1.89e-08)]_13 chrVIII:148931-149282 6.56e-01 100 chrXIII:362940-363410 9.73e-01 100 chrV:176879-177402 2.15e-16 13_[+3(1.47e-14)]_13_[-1(9.76e-10)]_\ 25 chrV:26854-28379 3.06e-01 100 chrXVI:642256-643366 5.08e-01 100 chrII:197155-197837 7.06e-07 52_[+2(8.36e-11)]_27 chrVII:771628-772221 2.44e-01 100 chrXII:448470-448848 1.55e-05 45_[+1(6.97e-10)]_34 chrIX:197337-197811 5.48e-09 72_[+3(2.64e-13)] chrVIII:505806-506213 5.98e-01 100 chrX:73385-73485 5.13e-01 100 chrIV:117159-118188 9.12e-01 100 chrV:249757-251043 9.24e-01 100 chrIV:116794-117000 8.70e-01 100 chrVII:726193-728074 5.77e-01 100 chrIX:316780-318216 3.40e-01 100 chrXIII:549989-553152 9.50e-01 100 chrVIII:10327-10989 9.53e-01 100 chrXIV:602100-602564 2.87e-13 34_[+2(8.36e-11)]_22_[-1(5.81e-09)]_\ 2 chrVII:531306-532321 9.03e-01 100 chrVIII:34404-36115 5.38e-01 100 chrXVI:55846-56427 5.41e-01 100 chrIV:220967-222364 4.15e-01 100 chrVII:541711-542177 6.22e-06 1_[-1(9.76e-10)]_78 chrX:453229-453329 1.22e-01 100 chrV:67115-68916 6.77e-02 100 chrXV:899824-901203 8.35e-01 100 chrIV:308014-310180 8.85e-01 100 chrIV:359312-359781 7.19e-01 100 chrXIV:569686-570175 1.01e-06 34_[-2(8.36e-11)]_45 chrVII:483395-483676 1.33e-01 3_[-1(7.02e-05)]_76 chrX:204544-204644 1.42e-09 45_[+3(9.11e-12)]_27 chrXV:678575-679158 3.20e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************