Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/AWRI1631--ACE2.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.013955
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/AWRI1631--ACE2.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.056698
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/AWRI1631--ACE2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.072016
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.011892
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/AWRI1631--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/background
Finished invoke:
  name: bg  status: 0  time: 0.012913
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 683.789324
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 20.529644
Invoking:
  centrimo -seqlen 842 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/AWRI1631--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.131831
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.147919
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/background -primary RTCVBSGGTTCGANYCCSVKH /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/AWRI1631--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.437037
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/background -primary DTGGYBYAGTGGKWWRRGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/AWRI1631--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.42287
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/background -primary WACAYCCRTACAYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/AWRI1631--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.342902
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/background -primary AAAAADAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/AWRI1631--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.306885
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/background -primary CGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/AWRI1631--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.188287
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/AWRI1631--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.187422
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/background --motif RTCVBSGGTTCGANYCCSVKH /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/AWRI1631--ACE2.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.256318
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/background --motif DTGGYBYAGTGGKWWRRGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/AWRI1631--ACE2.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.243516
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/background --motif WACAYCCRTACAYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/AWRI1631--ACE2.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.235892
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/background --motif AAAAADAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/AWRI1631--ACE2.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.172199
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/background --motif CGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/AWRI1631--ACE2.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.151755
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/AWRI1631--ACE2.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.158821
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ACE2/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.139465
Done