******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--YAP3/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:617801-617901 1.0000 100 chrII:477301-477705 1.0000 100 chrIX:255217-255621 1.0000 100 chrVII:883610-884014 1.0000 100 chrV:354723-355127 1.0000 100 chrXIV:619726-620058 1.0000 100 chrXVI:860281-860508 1.0000 100 chrVI:101638-102042 1.0000 100 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chrVIII:147933-148337 1.0000 100 chrXII:842463-842867 1.0000 100 chrIV:45695-46099 1.0000 100 chrXVI:701872-702120 1.0000 100 chrII:680515-680919 1.0000 100 chrVIII:62657-62912 1.0000 100 chrXIV:507408-507524 1.0000 100 chrX:663870-663970 1.0000 100 chrVII:479374-479576 1.0000 100 chrXV:900033-900437 1.0000 100 chrII:478956-479210 1.0000 100 chrIV:1461460-1461864 1.0000 100 chrV:67267-67671 1.0000 100 chrVII:774248-774500 1.0000 100 chrI:139041-139278 1.0000 100 chrXV:897677-898081 1.0000 100 chrVII:541731-542021 1.0000 100 chrXIV:626079-626483 1.0000 100 chrVII:364166-364570 1.0000 100 chrIV:1466595-1466999 1.0000 100 chrV:322193-322597 1.0000 100 chrXIII:83926-84330 1.0000 100 chrXIV:62386-62790 1.0000 100 chrVII:148141-148244 1.0000 100 chrXV:254554-254958 1.0000 100 chrXIII:747890-748008 1.0000 100 chrXV:274572-274782 1.0000 100 chrXVI:572152-572351 1.0000 100 chrXII:459536-460174 1.0000 100 chrXIII:259116-259332 1.0000 100 chrII:9389-9793 1.0000 100 chrII:88930-89334 1.0000 100 chrXI:100340-100744 1.0000 100 chrXVI:377819-378223 1.0000 100 chrIV:1270032-1270436 1.0000 100 chrXVI:407394-407798 1.0000 100 chrXIII:222598-223002 1.0000 100 chrX:355300-355400 1.0000 100 chrXV:780332-780870 1.0000 100 chrXV:438494-438789 1.0000 100 chrXII:156920-157324 1.0000 100 chrIV:1150744-1151074 1.0000 100 chrXII:199379-199480 1.0000 100 chrX:115883-115983 1.0000 100 chrVII:882867-883029 1.0000 100 chrXV:620406-620647 1.0000 100 chrXIV:283146-283550 1.0000 100 chrV:288396-288616 1.0000 100 chrVIII:132974-133229 1.0000 100 chrVII:787594-787998 1.0000 100 chrVIII:127542-127946 1.0000 100 chrXI:617658-618062 1.0000 100 chrVII:798769-799173 1.0000 100 chrXIII:550621-551025 1.0000 100 chrXII:198544-198948 1.0000 100 chrXIII:372420-372597 1.0000 100 chrXIV:63993-64397 1.0000 100 chrVI:210597-210833 1.0000 100 chrX:228001-228101 1.0000 100 chrII:802658-803062 1.0000 100 chrXIII:91877-92033 1.0000 100 chrXII:47700-47836 1.0000 100 chrXII:573149-573553 1.0000 100 chrXII:712648-712806 1.0000 100 chrV:397454-397858 1.0000 100 chrXIII:480554-480817 1.0000 100 chrVI:220952-221356 1.0000 100 chrIX:98230-98634 1.0000 100 chrII:421136-421540 1.0000 100 chrV:225459-225638 1.0000 100 chrX:121873-121973 1.0000 100 chrXVI:654797-654950 1.0000 100 chrVII:602639-603043 1.0000 100 chrXI:431961-432365 1.0000 100 chrXIII:891312-891716 1.0000 100 chrXII:449749-450153 1.0000 100 chrVI:226641-226830 1.0000 100 chrIV:309645-310049 1.0000 100 chrIX:255819-255947 1.0000 100 chrVII:545287-545691 1.0000 100 chrXVI:842944-843166 1.0000 100 chrIII:123517-123746 1.0000 100 chrXV:663719-664002 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--YAP3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--YAP3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--YAP3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 597 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59700 N= 597 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.313 C 0.187 G 0.187 T 0.313 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--YAP3/background): A 0.316 C 0.184 G 0.184 T 0.316 ******************************************************************************** ******************************************************************************** MOTIF GSYBNBDTGGYBYAGTGGKT MEME-1 width = 20 sites = 170 llr = 2118 E-value = 8.1e-324 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSYBNBDTGGYBYAGTGGKT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :111212:3:::1a3::::2 pos.-specific C :54433::::643::12:11 probability G 8422224:7a:31:7:6a4: matrix T 2133333a::434::92:56 bits 2.4 * 2.2 * * 2.0 * * 1.7 * * * Relative 1.5 * * * * Entropy 1.2 * *** *** * (18.0 bits) 1.0 * **** *** * 0.7 ** **** ***** 0.5 *** ***** ******* 0.2 **** *************** 0.0 -------------------- Multilevel GCCCTTGTGGCCTAGTGGTT consensus GTTCCT A TGC A T GA sequence GGGGA T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYBNBDTGGYBYAGTGGKT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrVII:774248-774500 + 25 2.40e-09 TCAATTAATT GGGCGTGTGGCGTAGTCGGT AGCGCGCTCC chrXI:517885-518096 + 48 2.40e-09 TATCTACTAT GGGCGTGTGGCGTAGTCGGT AGCGCGCTCC chrXII:656963-657065 - 23 2.40e-09 CAAGAAAATT GGGCGTGTGGCGTAGTCGGT AGCGCGCTCC chrX:197283-197383 - 34 2.40e-09 AATAATATTA GGGCGTGTGGCGTAGTCGGT AGCGCGCTCC chrXI:219802-220007 + 41 2.40e-09 ACAGTAAATA GGGCGTGTGGCGTAGTCGGT AGCGCGCTCC chrXIII:321077-321300 - 62 2.40e-09 AATACAAATC GGGCGTGTGGCGTAGTCGGT AGCGCGCTCC chrII:197284-197688 + 58 2.94e-09 CAGTAATCAA GGTCTCTTGGCCCAGTTGGT TAAGGCACCG chrXII:1052026-1052170 - 77 2.94e-09 TCAT GGTCTCTTGGCCCAGTTGGT TAAGGCACCG chrXVI:819399-819629 + 65 2.94e-09 ACAATAGAAT GGTCTCTTGGCCCAGTTGGT TAAGGCACCG chrXVI:880234-880462 - 52 2.94e-09 ACAATATAAT GGTCTCTTGGCCCAGTTGGT TAAGGCACCG chrXII:734733-734877 + 47 2.94e-09 AACAAAGTTT GGTCTCTTGGCCCAGTTGGT TAAGGCACCG chrIX:183394-183625 - 35 2.94e-09 ACAAATTCCT GGTCTCTTGGCCCAGTTGGT TAAGGCACCG chrV:443159-443331 - 61 2.94e-09 ATTAAAATTT GGTCTCTTGGCCCAGTTGGT TAAGGCACCG chrXVI:435840-436093 - 29 9.32e-09 TACAACAAAA GCTCGTATGGCGCAGTGGTA GCGCAGCAGA chrXV:663719-664002 - 56 1.11e-08 AACAAATAGT GGTTTCGTGGTCTAGTCGGT TATGGCATCT chrXIII:372420-372597 - 41 1.11e-08 AATAAAACCT GGTTTCGTGGTCTAGTCGGT TATGGCATCT chrI:139041-139278 + 43 1.11e-08 CAATTAGTAC GGGCGTGTGGTCTAGTGGTA TGATTCTCGC chrXI:308144-308312 - 20 1.11e-08 ACAATTAAGT GGTTTCGTGGTCTAGTCGGT TATGGCATCT chrXI:379616-379757 + 44 1.11e-08 CAGATTAATA GGTTTCGTGGTCTAGTCGGT TATGGCATCT chrX:378229-378329 + 81 1.11e-08 TAAATTAATA GGTTTCGTGGTCTAGTCGGT chrVII:823374-823615 + 38 1.11e-08 CAATAAGAGT GGTTTCGTGGTCTAGTCGGT TATGGCATCT chrXIII:586641-586747 - 46 1.11e-08 AACTTACTAT GGTTTCGTGGTCTAGTCGGT TATGGCATCT chrXIII:420561-420779 - 22 1.11e-08 ACAAATAACA GGTTTCGTGGTCTAGTCGGT TATGGCATCT chrV:469351-469550 + 57 1.11e-08 AGAAATAATT GGTTTCGTGGTCTAGTCGGT TATGGCATCT chrXIV:568005-568249 + 38 1.11e-08 TAAAATAATC GGGCGTGTGGTCTAGTGGTA TGATTCTCGC chrV:438591-438826 + 42 1.11e-08 CAACAAATTA GGTTTCGTGGTCTAGTCGGT TATGGCATCT chrXIII:196061-196237 - 52 1.11e-08 AAGTTCACAA GGGCGTGTGGTCTAGTGGTA TGATTCTCGC chrVIII:388879-389115 - 29 1.11e-08 ACAGATACAT GGGCGTGTGGTCTAGTGGTA TGATTCTCGC chrXII:605260-605523 - 72 1.33e-08 TTCGAAAAT GCTCGTGTAGCTCAGTGGTT AGAGCTTCGT chrXI:46651-46907 - 58 1.33e-08 AAATTACTCA GCCCTTTTGGCCAAGTGGTA AGGCATCGCA chrIV:884228-884465 + 65 1.33e-08 TTTCGAAAAT GCTCGTGTAGCTCAGTGGTT AGAGCTTCGT chrI:166179-166391 + 32 1.58e-08 GTAATGAGTT GGGCACATGGCGCAGTTGGT AGCGCGCTTC chrVI:226641-226830 - 56 1.86e-08 AGATTAAAAT GCCTTGTTGGCGCAATCGGT AGCGCGTATG chrXIII:480554-480817 - 39 1.86e-08 ACAATAAGTA GCCTTGTTGGCGCAATCGGT AGCGCGTATG chrVIII:132974-133229 - 37 1.86e-08 TATAATAAGT GGCAACTTGGCCGAGTGGTT AAGGCGAAAG chrIV:1150744-1151074 - 63 1.86e-08 AAGTGTTTCA GTCCCAGTGGCCGAGTGGTT AAGGCGATGC chrXIII:259116-259332 - 46 1.86e-08 AAGTTAGTAT GGCAACTTGGCCGAGTGGTT AAGGCGAAAG chrXV:274572-274782 + 46 1.86e-08 AAGTAATCGT GTCCCAGTGGCCGAGTGGTT AAGGCGATGC chrV:435697-435911 - 51 1.86e-08 AACAATAAGA GCCTTGTTGGCGCAATCGGT AGCGCGTATG chrXII:167887-168142 - 42 1.86e-08 ATAGTCATAT GGCAACTTGGCCGAGTGGTT AAGGCGAAAG chrIX:300158-300427 - 39 1.86e-08 CAACGAAATA GCCTTGTTGGCGCAATCGGT AGCGCGTATG chrVII:876284-876563 + 21 1.86e-08 TAATAGAATA GCCTTGTTGGCGCAATCGGT AGCGCGTATG chrIV:437647-437869 + 64 1.86e-08 TCATTAGTAA GGCAACTTGGCCGAGTGGTT AAGGCGAAAG chrV:86430-86742 + 68 1.86e-08 AATGAGTTAT GGCAACTTGGCCGAGTGGTT AAGGCGAAAG chrIV:1352404-1352641 - 47 1.86e-08 CAACGAAATA GCCTTGTTGGCGCAATCGGT AGCGCGTATG chrVII:122221-122407 + 5 1.86e-08 ATTA GCCTTGTTGGCGCAATCGGT AGCGCGTATG chrX:414843-414943 + 56 1.86e-08 CAACGAATTA GCCTTGTTGGCGCAATCGGT AGCGCGTATG chrIV:1305535-1305741 + 42 1.86e-08 TACAAATTAA GGCAACTTGGCCGAGTGGTT AAGGCGAAAG chrV:135381-135596 - 40 1.86e-08 CAAGAAAAAA GCCTTGTTGGCGCAATCGGT AGCGCGTATG chrXII:784278-784527 + 2 1.86e-08 C GTCCCAGTGGCCGAGTGGTT AAGGCGATGC chrVI:191481-191714 - 47 1.86e-08 AAGAGATTCT GTCCCAGTGGCCGAGTGGTT AAGGCGATGC chrIV:1201626-1201905 + 35 1.86e-08 CAAATAAATA GCCTTGTTGGCGCAATCGGT AGCGCGTATG chrII:227049-227151 + 25 1.86e-08 TGTAAAACGA GGCAACTTGGCCGAGTGGTT AAGGCGAAAG chrVII:185627-185884 - 62 1.86e-08 CAACGAAATA GCCTTGTTGGCGCAATCGGT AGCGCGTATG chrV:288396-288616 - 49 2.20e-08 CATAATGATA GGCACTATGGCCGAGTGGTT AAGGCGACAG chrIII:227818-228087 + 40 2.20e-08 AAATCGAAAT GGCACTATGGCCGAGTGGTT AAGGCGAGAG chrII:326776-326977 - 20 2.59e-08 TCGAGTTCCG GGTCCAATGGTCCAGTGGTT CAAGACGTCG chrIV:488731-488945 - 63 2.59e-08 ATGGGTTTCC GGTCCAATGGTCCAGTGGTT CAAGACGTCG chrVII:661629-661874 + 48 3.54e-08 GTAAAAATTT GCCTCCTTAGCTTAGTGGTA GAGCGTTGCA chrVII:779531-779708 + 47 4.80e-08 AGTTAACCCC GGGCGGTTAGTGTAGTGGTT ATCATCCCAC chrXV:594323-594525 - 32 4.80e-08 TGATTGAAAC GCGCAAGTGGTTCAGTGGTT AGAATTTATG chrXV:110872-111101 - 78 4.80e-08 CCC GGGCGGTTAGTGTAGTGGTT ATCATCCCAC chrXIII:747890-748008 - 45 5.57e-08 CATATGACTA GCTCGCGTGGCGTAATGGCA ACGCGTCTGA chrVII:736190-736458 + 66 5.57e-08 AATTTCAATA GCTCGCGTGGCGTAATGGCA ACGCGTCTGA chrVII:828608-828929 - 57 5.57e-08 ACAAACAGTA GCTCGCGTGGCGTAATGGCA ACGCGTCTGA chrXII:592491-592696 - 57 5.57e-08 AACATACAAT GGGAGTTTGGCCGAGTGGTT TAAGGCGTCA chrX:374481-374581 - 13 5.57e-08 ACAAATAGTA GCTCGCGTGGCGTAATGGCA ACGCGTCTGA chrIV:568770-569043 + 26 5.57e-08 ACAAATAGTA GCTCGCGTGGCGTAATGGCA ACGCGTCTGA chrXII:732019-732225 + 18 5.57e-08 AACATACAAT GGGAGTTTGGCCGAGTGGTT TAAGGCGTCA chrXIII:131764-132029 - 31 5.57e-08 AAGAAATTTA GCTCGCGTGGCGTAATGGCA ACGCGTCTGA chrX:617801-617901 + 33 5.57e-08 AACAAACAAT GGGAGTTTGGCCGAGTGGTT TAAGGCGTCA chrIII:168233-168498 - 38 9.85e-08 AAGAAGTCCT GGTCCTATAGTGTAGTGGTT ATCACTTTCG chrXII:448578-448807 - 60 9.85e-08 AAGAAGTTCC GGTCCTATAGTGTAGTGGTT ATCACTTTCG chrIV:520863-521065 + 58 9.85e-08 TCCATTTTAG GGTCCTATAGTGTAGTGGTT ATCACTTTCG chrIII:295428-295548 + 46 1.48e-07 ATACAATTAA GCTTCTATGGCCAAGTTGGT AAGGCGCCAC chrXV:113695-113969 + 20 1.48e-07 CAGAGATTTA GCTTCTATGGCCAAGTTGGT AAGGCGCCAC chrX:59029-59129 - 56 1.48e-07 TAAAATAGAA GCTTCTATGGCCAAGTTGGT AAGGCGCCAC chrIV:434089-434493 - 76 1.48e-07 CAGAA GCTTCTATGGCCAAGTTGGT AAGGCGCCAC chrVIII:116066-116350 - 2 1.48e-07 CACTAATAGA GCTTCTATGGCCAAGTTGGT A chrXIV:104698-104927 + 43 1.48e-07 CAAGTTCTGA GCTTCTATGGCCAAGTTGGT AAGGCGCCAC chrXVI:572152-572351 + 68 1.91e-07 ACAATACTTC GCGCAAGTGGTTTAGTGGTA AAATCCAACG chrVII:930959-931127 - 11 1.91e-07 TAATCAGTAA GCGCAAGTGGTTTAGTGGTA AAATCCAACG chrIV:992724-992941 + 50 1.91e-07 ACAATTGTGA GCGCAAGTGGTTTAGTGGTA AAATCCAACG chrXV:282061-282265 + 51 1.91e-07 ACATGAAAGC GCGCAAGTGGTTTAGTGGTA AAATCCAACG chrVI:162099-162360 + 49 1.91e-07 AAGAAAACAA GCGCAAGTGGTTTAGTGGTA AAATCCAACG chrV:61785-62041 - 78 1.91e-07 TAA GCGCAAGTGGTTTAGTGGTA AAATCCAACG chrIII:142617-142875 - 56 1.91e-07 AAGATTACTA GCGCAAGTGGTTTAGTGGTA AAATCCAACG chrVII:845512-845802 + 42 1.91e-07 TAAATAACAA GCGCAAGTGGTTTAGTGGTA AAATCCAACG chrVI:180876-181128 - 73 1.91e-07 AGAAATAA GCGCAAGTGGTTTAGTGGTA AAATCCAACG chrXVI:860281-860508 + 35 1.91e-07 TAAATAACAA GCGCAAGTGGTTTAGTGGTA AAATCCAACG chrII:350707-350915 + 66 2.46e-07 TCAATAAAAG GGTTTTATAGTGTAGTGGTT ATCACTTTCG chrV:131072-131259 - 19 2.46e-07 ATAATTAAGA GGTTTTATAGTGTAGTGGTT ATCACTTTCG chrII:9389-9793 + 42 3.14e-07 GAAAATTCGT GGAGGGTTGGCCGAGTGGTC TAAGGCGGCA chrX:424415-424515 - 10 3.14e-07 TAAATAAGAT GGAGGGTTGGCCGAGTGGTC TAAGGCGGC chrXIV:726146-726277 - 37 3.14e-07 ATAAATCTTT GGAGGGTTGGCCGAGTGGTC TAAGGCGGCA chrXIII:504775-504960 + 78 3.98e-07 ACAGATAAGT GGTTGTTTGGCCGAGCGGTC TAA chrXI:458503-458692 + 10 3.98e-07 CAAATAAGT GGTTGTTTGGCCGAGCGGTC TAAGGCGCCT chrIII:90760-91008 + 25 3.98e-07 ACAAGTAATT GGTTGTTTGGCCGAGCGGTC TAAGGCGCCT chrX:538479-538579 + 17 4.47e-07 AACCAAGTTG GTTCCGTTGGCGTAATGGTA ACGCGTCTCC chrIII:127593-127858 + 41 5.02e-07 AAGATAAAAT GACTCCATGGCCAAGTTGGT TAAGGCGTGC chrVII:731025-731257 + 46 5.02e-07 TAGTCAAAAA GACTCCATGGCCAAGTTGGT TAAGGCGTGC chrXVI:810622-810730 + 50 5.02e-07 CATTATTTGC GACTCCATGGCCAAGTTGGT TAAGGCGTGC chrVI:137400-137631 - 75 5.02e-07 GTGACT GACTCCATGGCCAAGTTGGT TAAGGCGTGC chrXV:438494-438789 + 52 6.29e-07 GAAGAACTCA TCCTTGTTAGCTCAGTTGGT AGAGCGTTCG chrVII:115381-115661 + 17 6.29e-07 GAAGAACTCA TCCTTGTTAGCTCAGTTGGT AGAGCGTTCG chrXI:578863-579152 + 8 6.29e-07 GAACTCA TCCTTGTTAGCTCAGTTGGT AGAGCGTTCG chrXII:374336-374460 + 7 6.29e-07 ATCTTG TTCCTCGTGGCCCAATGGTC ACGGCGTCTG chrXI:490886-491111 + 20 6.29e-07 ATAATTCTTG TTCCTCGTGGCCCAATGGTC ACGGCGTCTG chrVII:700883-701138 - 69 6.29e-07 GAAGAACTCA TCCTTGTTAGCTCAGTTGGT AGAGCGTTCG chrXII:875280-875495 + 39 6.29e-07 GAAGAACTCA TCCTTGTTAGCTCAGTTGGT AGAGCGTTCG chrX:233846-233946 + 63 6.29e-07 TATATTCTTG TTCCTCGTGGCCCAATGGTC ACGGCGTCTG chrIII:149794-150030 + 58 1.33e-06 TGTAATGTTG AGCGCCGTGGCGCAGTGGAA GCGCGCAGGG chrXV:710095-710273 + 67 1.33e-06 AAGAATTAGC AGCGCCGTGGCGCAGTGGAA GCGCGCAGGG chrV:100022-100222 + 61 1.33e-06 AAGTTGGCTA AGCGCCGTGGCGCAGTGGAA GCGCGCAGGG chrX:517827-517927 - 33 1.33e-06 ATAAAAGTTA AGCGCCGTGGCGCAGTGGAA GCGCGCAGGG chrIII:123517-123746 - 48 1.62e-06 TTTCAAAGGA GGGCGTGTGGTCTAGAGGTA TGATTCTCGC chrV:431221-431462 - 56 1.62e-06 ATTTTGTAGT GCCCTCTTGGGCTAGCGGTA AAGGTGCGCA chrXIV:631772-631965 - 80 1.62e-06 C GGGCGTGTGGTCTAGAGGTA TGATTCTCGC chrVIII:62657-62912 + 21 2.40e-06 AAAATCATAT GCCATCTTAGTATAGTGGTT AGTACACATC chrXIII:362963-363195 + 35 2.40e-06 ATCCAAGTTT GCCATCTTAGTATAGTGGTT AGTACACATC chrVII:110569-110770 - 58 2.40e-06 ATAATTACCT GCCATCTTAGTATAGTGGTT AGTACACATC chrIV:1095372-1095565 - 24 3.18e-06 TCTTATGTTA GCGGACTTAGCTCAGTTGGG AGAGCGCCAG chrVII:700573-700837 + 20 3.18e-06 CAGATGAATT GGTACTCTGGCCGAGTGGTC TAAGGCGTCA chrXII:818517-818736 + 33 3.48e-06 AATTTATTAT GCTCCTCTAGTGCAATGGTT AGCATGCATT chrXVI:56141-56326 - 72 4.56e-06 ACAATAGTT GAAGCGGTGGCTCAATGGTA GAGCTTTCGA chrVII:878632-878941 - 60 4.56e-06 ATTTCAAGAT GAAGCGGTGGCTCAATGGTA GAGCTTTCGA chrXI:302810-303050 + 38 4.56e-06 ATTCCAAGAT GAAGCGGTGGCTCAATGGTA GAGCTTTCGA chrX:422858-422958 + 20 4.56e-06 TCCTTTGTAT GCTTCAGTAGCTCAGTAGGA AGAGCGTCAG chrVII:287303-287584 - 43 4.56e-06 ATTTCAAGAT GAAGCGGTGGCTCAATGGTA GAGCTTTCGA chrX:415924-416024 - 29 4.56e-06 AACAAAAGTT GAAGCGGTGGCTCAATGGTA GAGCTTTCGA chrXIII:572827-573070 - 38 4.56e-06 ATAACAGACA GCTTCAGTAGCTCAGTAGGA AGAGCGTCAG chrIV:1175723-1175992 + 22 4.56e-06 ACAAAACAAA GCTTCAGTAGCTCAGTAGGA AGAGCGTCAG chrII:36315-36501 + 40 4.98e-06 TTAGTTGTAA GCGGATTTAGCTCAGTTGGG AGAGCGCCAG chrXVI:622525-622783 - 8 4.98e-06 ATTCTGATAT GCGGATTTAGCTCAGTTGGG AGAGCGC chrVII:440691-440932 - 27 4.98e-06 TAAAATATAT GCGGATTTAGCTCAGTTGGG AGAGCGCCAG chrVI:210597-210833 - 23 7.64e-06 ACAAAAACGA CTCTCGGTAGCCAAGTTGGT TTAAGGCGCA chrXIII:837828-838014 + 57 7.64e-06 AGTTAATTGA CTCTCGGTAGCCAAGTTGGT TTAAGGCGCA chrXIII:168792-168895 + 2 7.64e-06 A CTCTCGGTAGCCAAGTTGGT TTAAGGCGCA chrXV:288075-288297 + 56 7.64e-06 AAAATAGCTT CTCTCGGTAGCCAAGTTGGT TTAAGGCGCA chrX:355300-355400 + 52 9.77e-06 CTTTGTTTCT TCCGTGATAGTTTAATGGTC AGAATGGGCG chrVII:544530-544782 - 23 9.77e-06 AGATATTTCT TCCGTGATAGTTTAATGGTC AGAATGGGCG chrXII:793783-794014 + 70 9.77e-06 TGTAATATAA TCCGTGATAGTTTAATGGTC AGAATGGGCG chrX:204523-204623 + 60 9.77e-06 AACATAAAAA TCCGTGATAGTTTAATGGTC AGAATGGGCG chrXII:427029-427188 + 74 9.77e-06 GTGTTTCTTA TCCGTGATAGTTTAATGGTC AGAATGG chrXIII:463467-463627 + 57 9.77e-06 CAGAAATTTG TCCGTGATAGTTTAATGGTC AGAATGGGCG chrX:541442-541542 + 38 9.77e-06 AGAAAGAAAA TCCGTGATAGTTTAATGGTC AGAATGGGCG chrVIII:475653-475848 - 59 1.24e-05 TTAAAAGTCT GTTCCAATAGTGTAGCGGCT ATCACGTTGC chrIV:1075443-1075654 - 27 1.24e-05 CCGTAATATT GTTCCAATAGTGTAGCGGCT ATCACGTTGC chrIV:1017134-1017372 - 56 1.34e-05 CAAGGTACAA TCCGATGTAGTGTAACGGCT ATCACATCAC chrIX:197438-197724 + 61 1.34e-05 GCTAATCAAA TCCGATGTAGTGTAACGGCT ATCACATCAC chrX:115883-115983 - 35 2.63e-05 CCGTTTATAA TCCGATATAGTGTAACGGCT ATCACATCAC chrII:645040-645293 + 51 2.63e-05 TAAGTTATTA TCCGATATAGTGTAACGGCT ATCACATCAC chrV:176992-177205 + 51 2.63e-05 CCTACTTTGA TCCGATATAGTGTAACGGCT ATCACATCAC chrXII:797073-797316 + 34 2.63e-05 GTAGTTGTCG TCCGATATAGTGTAACGGCT ATCACATCAC chrXIII:290682-290916 + 52 2.63e-05 TGAAATATAA TCCGATATAGTGTAACGGCT ATCACATCAC chrIX:370209-370613 + 56 2.63e-05 TAGATTATAA TCCGATATAGTGTAACGGCT ATCACATCAC chrV:487287-487499 - 40 2.63e-05 ATGAATTTAA TCCGATATAGTGTAACGGCT ATCACATCAC chrV:354723-355127 + 59 2.63e-05 TGTATTGTAA TCCGATATAGTGTAACGGCT ATCACATCAC chrXV:620406-620647 + 64 2.82e-05 ATTAAGAAAC ATTTTCGTGGTGAAGTTGTT TACAACGCAG chrXVI:294445-294849 - 53 5.93e-05 GAATCGGGCA TCAGGCTTGGTTTAGCAGGT GCCACTACTT chrVII:799617-800021 - 61 5.93e-05 CAAGTATTTA CCCTTTATAGTGTTGTCGTT GTTTGAATTA chrII:405890-406294 + 22 1.10e-04 TTATTCTTCT GCCTCCTTAGTACAGTGTAA TGCTCCTCAG chrXII:460379-460829 - 29 1.17e-04 CCGGACAGTT TGCTTCATGGAGCAGTTTTT TCCGCACCAT chrXIII:91877-92033 + 76 1.24e-04 CTTCTTGTTA CCCCTTTTGGCGCTTTGGAT AAGTA chrVII:364166-364570 - 62 1.74e-04 AAGCACTTTA TCCAAGGTGGTTCTTTCGGT AACCGTGAAG chrXI:430707-431111 + 22 3.83e-04 CGAAGATCCT TTCTGAGTAGCGTAGTTTAA GGGAGCACAC chrIV:405347-405751 + 81 5.37e-04 CTTGGCAGTA GCCTTAATATTTTATTTGGC chrXII:673392-673796 + 9 5.89e-04 TGTGCTTT GGTCGGTTTTTCCATTCGGT GAATTCATAC chrXV:159385-159690 - 76 6.76e-04 TCAAA TCGTTGGTAGATACGTTGTT GACACTTCTA chrIV:340748-341152 + 52 8.45e-04 AATATAAGCT TATGCTATGGCTCATTGTAT TTGACATAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYBNBDTGGYBYAGTGGKT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:774248-774500 2.4e-09 24_[+1]_56 chrXI:517885-518096 2.4e-09 47_[+1]_33 chrXII:656963-657065 2.4e-09 22_[-1]_58 chrX:197283-197383 2.4e-09 33_[-1]_47 chrXI:219802-220007 2.4e-09 40_[+1]_40 chrXIII:321077-321300 2.4e-09 61_[-1]_19 chrII:197284-197688 2.9e-09 57_[+1]_23 chrXII:1052026-1052170 2.9e-09 76_[-1]_4 chrXVI:819399-819629 2.9e-09 64_[+1]_16 chrXVI:880234-880462 2.9e-09 51_[-1]_29 chrXII:734733-734877 2.9e-09 46_[+1]_34 chrIX:183394-183625 2.9e-09 34_[-1]_46 chrV:443159-443331 2.9e-09 60_[-1]_20 chrXVI:435840-436093 9.3e-09 28_[-1]_52 chrXV:663719-664002 1.1e-08 55_[-1]_25 chrXIII:372420-372597 1.1e-08 40_[-1]_40 chrI:139041-139278 1.1e-08 42_[+1]_38 chrXI:308144-308312 1.1e-08 19_[-1]_61 chrXI:379616-379757 1.1e-08 43_[+1]_37 chrX:378229-378329 1.1e-08 80_[+1] chrVII:823374-823615 1.1e-08 37_[+1]_43 chrXIII:586641-586747 1.1e-08 45_[-1]_35 chrXIII:420561-420779 1.1e-08 21_[-1]_59 chrV:469351-469550 1.1e-08 56_[+1]_24 chrXIV:568005-568249 1.1e-08 37_[+1]_43 chrV:438591-438826 1.1e-08 41_[+1]_39 chrXIII:196061-196237 1.1e-08 51_[-1]_29 chrVIII:388879-389115 1.1e-08 28_[-1]_52 chrXII:605260-605523 1.3e-08 71_[-1]_9 chrXI:46651-46907 1.3e-08 57_[-1]_23 chrIV:884228-884465 1.3e-08 64_[+1]_16 chrI:166179-166391 1.6e-08 31_[+1]_49 chrVI:226641-226830 1.9e-08 55_[-1]_25 chrXIII:480554-480817 1.9e-08 38_[-1]_42 chrVIII:132974-133229 1.9e-08 36_[-1]_44 chrIV:1150744-1151074 1.9e-08 62_[-1]_18 chrXIII:259116-259332 1.9e-08 45_[-1]_35 chrXV:274572-274782 1.9e-08 45_[+1]_35 chrV:435697-435911 1.9e-08 50_[-1]_30 chrXII:167887-168142 1.9e-08 41_[-1]_39 chrIX:300158-300427 1.9e-08 38_[-1]_42 chrVII:876284-876563 1.9e-08 20_[+1]_60 chrIV:437647-437869 1.9e-08 63_[+1]_17 chrV:86430-86742 1.9e-08 67_[+1]_13 chrIV:1352404-1352641 1.9e-08 46_[-1]_34 chrVII:122221-122407 1.9e-08 4_[+1]_76 chrX:414843-414943 1.9e-08 55_[+1]_25 chrIV:1305535-1305741 1.9e-08 41_[+1]_39 chrV:135381-135596 1.9e-08 39_[-1]_41 chrXII:784278-784527 1.9e-08 1_[+1]_79 chrVI:191481-191714 1.9e-08 46_[-1]_34 chrIV:1201626-1201905 1.9e-08 34_[+1]_46 chrII:227049-227151 1.9e-08 24_[+1]_56 chrVII:185627-185884 1.9e-08 61_[-1]_19 chrV:288396-288616 2.2e-08 48_[-1]_32 chrIII:227818-228087 2.2e-08 39_[+1]_41 chrII:326776-326977 2.6e-08 19_[-1]_61 chrIV:488731-488945 2.6e-08 62_[-1]_18 chrVII:661629-661874 3.5e-08 47_[+1]_33 chrVII:779531-779708 4.8e-08 46_[+1]_34 chrXV:594323-594525 4.8e-08 31_[-1]_49 chrXV:110872-111101 4.8e-08 77_[-1]_3 chrXIII:747890-748008 5.6e-08 44_[-1]_36 chrVII:736190-736458 5.6e-08 65_[+1]_15 chrVII:828608-828929 5.6e-08 56_[-1]_24 chrXII:592491-592696 5.6e-08 56_[-1]_24 chrX:374481-374581 5.6e-08 12_[-1]_68 chrIV:568770-569043 5.6e-08 25_[+1]_55 chrXII:732019-732225 5.6e-08 17_[+1]_63 chrXIII:131764-132029 5.6e-08 30_[-1]_50 chrX:617801-617901 5.6e-08 32_[+1]_48 chrIII:168233-168498 9.9e-08 37_[-1]_43 chrXII:448578-448807 9.9e-08 59_[-1]_21 chrIV:520863-521065 9.9e-08 57_[+1]_23 chrIII:295428-295548 1.5e-07 45_[+1]_35 chrXV:113695-113969 1.5e-07 19_[+1]_61 chrX:59029-59129 1.5e-07 55_[-1]_25 chrIV:434089-434493 1.5e-07 75_[-1]_5 chrVIII:116066-116350 1.5e-07 1_[-1]_79 chrXIV:104698-104927 1.5e-07 42_[+1]_38 chrXVI:572152-572351 1.9e-07 67_[+1]_13 chrVII:930959-931127 1.9e-07 10_[-1]_70 chrIV:992724-992941 1.9e-07 49_[+1]_31 chrXV:282061-282265 1.9e-07 50_[+1]_30 chrVI:162099-162360 1.9e-07 48_[+1]_32 chrV:61785-62041 1.9e-07 77_[-1]_3 chrIII:142617-142875 1.9e-07 55_[-1]_25 chrVII:845512-845802 1.9e-07 41_[+1]_39 chrVI:180876-181128 1.9e-07 72_[-1]_8 chrXVI:860281-860508 1.9e-07 34_[+1]_46 chrII:350707-350915 2.5e-07 65_[+1]_15 chrV:131072-131259 2.5e-07 18_[-1]_62 chrII:9389-9793 3.1e-07 41_[+1]_39 chrX:424415-424515 3.1e-07 9_[-1]_71 chrXIV:726146-726277 3.1e-07 36_[-1]_44 chrXIII:504775-504960 4e-07 77_[+1]_3 chrXI:458503-458692 4e-07 9_[+1]_71 chrIII:90760-91008 4e-07 24_[+1]_56 chrX:538479-538579 4.5e-07 16_[+1]_64 chrIII:127593-127858 5e-07 40_[+1]_40 chrVII:731025-731257 5e-07 45_[+1]_35 chrXVI:810622-810730 5e-07 49_[+1]_31 chrVI:137400-137631 5e-07 74_[-1]_6 chrXV:438494-438789 6.3e-07 51_[+1]_29 chrVII:115381-115661 6.3e-07 16_[+1]_64 chrXI:578863-579152 6.3e-07 7_[+1]_73 chrXII:374336-374460 6.3e-07 6_[+1]_74 chrXI:490886-491111 6.3e-07 19_[+1]_61 chrVII:700883-701138 6.3e-07 68_[-1]_12 chrXII:875280-875495 6.3e-07 38_[+1]_42 chrX:233846-233946 6.3e-07 62_[+1]_18 chrIII:149794-150030 1.3e-06 57_[+1]_23 chrXV:710095-710273 1.3e-06 66_[+1]_14 chrV:100022-100222 1.3e-06 60_[+1]_20 chrX:517827-517927 1.3e-06 32_[-1]_48 chrIII:123517-123746 1.6e-06 47_[-1]_33 chrV:431221-431462 1.6e-06 55_[-1]_25 chrXIV:631772-631965 1.6e-06 79_[-1]_1 chrVIII:62657-62912 2.4e-06 20_[+1]_60 chrXIII:362963-363195 2.4e-06 34_[+1]_46 chrVII:110569-110770 2.4e-06 57_[-1]_23 chrIV:1095372-1095565 3.2e-06 23_[-1]_57 chrVII:700573-700837 3.2e-06 19_[+1]_61 chrXII:818517-818736 3.5e-06 32_[+1]_48 chrXVI:56141-56326 4.6e-06 71_[-1]_9 chrVII:878632-878941 4.6e-06 59_[-1]_21 chrXI:302810-303050 4.6e-06 37_[+1]_43 chrX:422858-422958 4.6e-06 19_[+1]_61 chrVII:287303-287584 4.6e-06 42_[-1]_38 chrX:415924-416024 4.6e-06 28_[-1]_52 chrXIII:572827-573070 4.6e-06 37_[-1]_43 chrIV:1175723-1175992 4.6e-06 21_[+1]_59 chrII:36315-36501 5e-06 39_[+1]_41 chrXVI:622525-622783 5e-06 7_[-1]_73 chrVII:440691-440932 5e-06 26_[-1]_54 chrVI:210597-210833 7.6e-06 22_[-1]_58 chrXIII:837828-838014 7.6e-06 56_[+1]_24 chrXIII:168792-168895 7.6e-06 1_[+1]_79 chrXV:288075-288297 7.6e-06 55_[+1]_25 chrX:355300-355400 9.8e-06 51_[+1]_29 chrVII:544530-544782 9.8e-06 22_[-1]_58 chrXII:793783-794014 9.8e-06 69_[+1]_11 chrX:204523-204623 9.8e-06 59_[+1]_21 chrXII:427029-427188 9.8e-06 73_[+1]_7 chrXIII:463467-463627 9.8e-06 56_[+1]_24 chrX:541442-541542 9.8e-06 37_[+1]_43 chrVIII:475653-475848 1.2e-05 58_[-1]_22 chrIV:1075443-1075654 1.2e-05 26_[-1]_54 chrIV:1017134-1017372 1.3e-05 55_[-1]_25 chrIX:197438-197724 1.3e-05 60_[+1]_20 chrX:115883-115983 2.6e-05 34_[-1]_46 chrII:645040-645293 2.6e-05 50_[+1]_30 chrV:176992-177205 2.6e-05 50_[+1]_30 chrXII:797073-797316 2.6e-05 33_[+1]_47 chrXIII:290682-290916 2.6e-05 51_[+1]_29 chrIX:370209-370613 2.6e-05 55_[+1]_25 chrV:487287-487499 2.6e-05 39_[-1]_41 chrV:354723-355127 2.6e-05 58_[+1]_22 chrXV:620406-620647 2.8e-05 63_[+1]_17 chrXVI:294445-294849 5.9e-05 52_[-1]_28 chrVII:799617-800021 5.9e-05 60_[-1]_20 chrII:405890-406294 0.00011 21_[+1]_59 chrXII:460379-460829 0.00012 28_[-1]_52 chrXIII:91877-92033 0.00012 75_[+1]_5 chrVII:364166-364570 0.00017 61_[-1]_19 chrXI:430707-431111 0.00038 21_[+1]_59 chrIV:405347-405751 0.00054 80_[+1] chrXII:673392-673796 0.00059 8_[+1]_72 chrXV:159385-159690 0.00068 75_[-1]_5 chrIV:340748-341152 0.00084 51_[+1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYBNBDTGGYBYAGTGGKT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSYBNBDTGGYBYAGTGGKT width=20 seqs=170 chrVII:774248-774500 ( 25) GGGCGTGTGGCGTAGTCGGT 1 chrXI:517885-518096 ( 48) GGGCGTGTGGCGTAGTCGGT 1 chrXII:656963-657065 ( 23) GGGCGTGTGGCGTAGTCGGT 1 chrX:197283-197383 ( 34) GGGCGTGTGGCGTAGTCGGT 1 chrXI:219802-220007 ( 41) GGGCGTGTGGCGTAGTCGGT 1 chrXIII:321077-321300 ( 62) GGGCGTGTGGCGTAGTCGGT 1 chrII:197284-197688 ( 58) GGTCTCTTGGCCCAGTTGGT 1 chrXII:1052026-1052170 ( 77) GGTCTCTTGGCCCAGTTGGT 1 chrXVI:819399-819629 ( 65) GGTCTCTTGGCCCAGTTGGT 1 chrXVI:880234-880462 ( 52) GGTCTCTTGGCCCAGTTGGT 1 chrXII:734733-734877 ( 47) GGTCTCTTGGCCCAGTTGGT 1 chrIX:183394-183625 ( 35) GGTCTCTTGGCCCAGTTGGT 1 chrV:443159-443331 ( 61) GGTCTCTTGGCCCAGTTGGT 1 chrXVI:435840-436093 ( 29) GCTCGTATGGCGCAGTGGTA 1 chrXV:663719-664002 ( 56) GGTTTCGTGGTCTAGTCGGT 1 chrXIII:372420-372597 ( 41) GGTTTCGTGGTCTAGTCGGT 1 chrI:139041-139278 ( 43) GGGCGTGTGGTCTAGTGGTA 1 chrXI:308144-308312 ( 20) GGTTTCGTGGTCTAGTCGGT 1 chrXI:379616-379757 ( 44) GGTTTCGTGGTCTAGTCGGT 1 chrX:378229-378329 ( 81) GGTTTCGTGGTCTAGTCGGT 1 chrVII:823374-823615 ( 38) GGTTTCGTGGTCTAGTCGGT 1 chrXIII:586641-586747 ( 46) GGTTTCGTGGTCTAGTCGGT 1 chrXIII:420561-420779 ( 22) GGTTTCGTGGTCTAGTCGGT 1 chrV:469351-469550 ( 57) GGTTTCGTGGTCTAGTCGGT 1 chrXIV:568005-568249 ( 38) GGGCGTGTGGTCTAGTGGTA 1 chrV:438591-438826 ( 42) GGTTTCGTGGTCTAGTCGGT 1 chrXIII:196061-196237 ( 52) GGGCGTGTGGTCTAGTGGTA 1 chrVIII:388879-389115 ( 29) GGGCGTGTGGTCTAGTGGTA 1 chrXII:605260-605523 ( 72) GCTCGTGTAGCTCAGTGGTT 1 chrXI:46651-46907 ( 58) GCCCTTTTGGCCAAGTGGTA 1 chrIV:884228-884465 ( 65) GCTCGTGTAGCTCAGTGGTT 1 chrI:166179-166391 ( 32) GGGCACATGGCGCAGTTGGT 1 chrVI:226641-226830 ( 56) GCCTTGTTGGCGCAATCGGT 1 chrXIII:480554-480817 ( 39) GCCTTGTTGGCGCAATCGGT 1 chrVIII:132974-133229 ( 37) GGCAACTTGGCCGAGTGGTT 1 chrIV:1150744-1151074 ( 63) GTCCCAGTGGCCGAGTGGTT 1 chrXIII:259116-259332 ( 46) GGCAACTTGGCCGAGTGGTT 1 chrXV:274572-274782 ( 46) GTCCCAGTGGCCGAGTGGTT 1 chrV:435697-435911 ( 51) GCCTTGTTGGCGCAATCGGT 1 chrXII:167887-168142 ( 42) GGCAACTTGGCCGAGTGGTT 1 chrIX:300158-300427 ( 39) GCCTTGTTGGCGCAATCGGT 1 chrVII:876284-876563 ( 21) GCCTTGTTGGCGCAATCGGT 1 chrIV:437647-437869 ( 64) GGCAACTTGGCCGAGTGGTT 1 chrV:86430-86742 ( 68) GGCAACTTGGCCGAGTGGTT 1 chrIV:1352404-1352641 ( 47) GCCTTGTTGGCGCAATCGGT 1 chrVII:122221-122407 ( 5) GCCTTGTTGGCGCAATCGGT 1 chrX:414843-414943 ( 56) GCCTTGTTGGCGCAATCGGT 1 chrIV:1305535-1305741 ( 42) GGCAACTTGGCCGAGTGGTT 1 chrV:135381-135596 ( 40) GCCTTGTTGGCGCAATCGGT 1 chrXII:784278-784527 ( 2) GTCCCAGTGGCCGAGTGGTT 1 chrVI:191481-191714 ( 47) GTCCCAGTGGCCGAGTGGTT 1 chrIV:1201626-1201905 ( 35) GCCTTGTTGGCGCAATCGGT 1 chrII:227049-227151 ( 25) GGCAACTTGGCCGAGTGGTT 1 chrVII:185627-185884 ( 62) GCCTTGTTGGCGCAATCGGT 1 chrV:288396-288616 ( 49) GGCACTATGGCCGAGTGGTT 1 chrIII:227818-228087 ( 40) GGCACTATGGCCGAGTGGTT 1 chrII:326776-326977 ( 20) GGTCCAATGGTCCAGTGGTT 1 chrIV:488731-488945 ( 63) GGTCCAATGGTCCAGTGGTT 1 chrVII:661629-661874 ( 48) GCCTCCTTAGCTTAGTGGTA 1 chrVII:779531-779708 ( 47) GGGCGGTTAGTGTAGTGGTT 1 chrXV:594323-594525 ( 32) GCGCAAGTGGTTCAGTGGTT 1 chrXV:110872-111101 ( 78) GGGCGGTTAGTGTAGTGGTT 1 chrXIII:747890-748008 ( 45) GCTCGCGTGGCGTAATGGCA 1 chrVII:736190-736458 ( 66) GCTCGCGTGGCGTAATGGCA 1 chrVII:828608-828929 ( 57) GCTCGCGTGGCGTAATGGCA 1 chrXII:592491-592696 ( 57) GGGAGTTTGGCCGAGTGGTT 1 chrX:374481-374581 ( 13) GCTCGCGTGGCGTAATGGCA 1 chrIV:568770-569043 ( 26) GCTCGCGTGGCGTAATGGCA 1 chrXII:732019-732225 ( 18) GGGAGTTTGGCCGAGTGGTT 1 chrXIII:131764-132029 ( 31) GCTCGCGTGGCGTAATGGCA 1 chrX:617801-617901 ( 33) GGGAGTTTGGCCGAGTGGTT 1 chrIII:168233-168498 ( 38) GGTCCTATAGTGTAGTGGTT 1 chrXII:448578-448807 ( 60) GGTCCTATAGTGTAGTGGTT 1 chrIV:520863-521065 ( 58) GGTCCTATAGTGTAGTGGTT 1 chrIII:295428-295548 ( 46) GCTTCTATGGCCAAGTTGGT 1 chrXV:113695-113969 ( 20) GCTTCTATGGCCAAGTTGGT 1 chrX:59029-59129 ( 56) GCTTCTATGGCCAAGTTGGT 1 chrIV:434089-434493 ( 76) GCTTCTATGGCCAAGTTGGT 1 chrVIII:116066-116350 ( 2) GCTTCTATGGCCAAGTTGGT 1 chrXIV:104698-104927 ( 43) GCTTCTATGGCCAAGTTGGT 1 chrXVI:572152-572351 ( 68) GCGCAAGTGGTTTAGTGGTA 1 chrVII:930959-931127 ( 11) GCGCAAGTGGTTTAGTGGTA 1 chrIV:992724-992941 ( 50) GCGCAAGTGGTTTAGTGGTA 1 chrXV:282061-282265 ( 51) GCGCAAGTGGTTTAGTGGTA 1 chrVI:162099-162360 ( 49) GCGCAAGTGGTTTAGTGGTA 1 chrV:61785-62041 ( 78) GCGCAAGTGGTTTAGTGGTA 1 chrIII:142617-142875 ( 56) GCGCAAGTGGTTTAGTGGTA 1 chrVII:845512-845802 ( 42) GCGCAAGTGGTTTAGTGGTA 1 chrVI:180876-181128 ( 73) GCGCAAGTGGTTTAGTGGTA 1 chrXVI:860281-860508 ( 35) GCGCAAGTGGTTTAGTGGTA 1 chrII:350707-350915 ( 66) GGTTTTATAGTGTAGTGGTT 1 chrV:131072-131259 ( 19) GGTTTTATAGTGTAGTGGTT 1 chrII:9389-9793 ( 42) GGAGGGTTGGCCGAGTGGTC 1 chrX:424415-424515 ( 10) GGAGGGTTGGCCGAGTGGTC 1 chrXIV:726146-726277 ( 37) GGAGGGTTGGCCGAGTGGTC 1 chrXIII:504775-504960 ( 78) GGTTGTTTGGCCGAGCGGTC 1 chrXI:458503-458692 ( 10) GGTTGTTTGGCCGAGCGGTC 1 chrIII:90760-91008 ( 25) GGTTGTTTGGCCGAGCGGTC 1 chrX:538479-538579 ( 17) GTTCCGTTGGCGTAATGGTA 1 chrIII:127593-127858 ( 41) GACTCCATGGCCAAGTTGGT 1 chrVII:731025-731257 ( 46) GACTCCATGGCCAAGTTGGT 1 chrXVI:810622-810730 ( 50) GACTCCATGGCCAAGTTGGT 1 chrVI:137400-137631 ( 75) GACTCCATGGCCAAGTTGGT 1 chrXV:438494-438789 ( 52) TCCTTGTTAGCTCAGTTGGT 1 chrVII:115381-115661 ( 17) TCCTTGTTAGCTCAGTTGGT 1 chrXI:578863-579152 ( 8) TCCTTGTTAGCTCAGTTGGT 1 chrXII:374336-374460 ( 7) TTCCTCGTGGCCCAATGGTC 1 chrXI:490886-491111 ( 20) TTCCTCGTGGCCCAATGGTC 1 chrVII:700883-701138 ( 69) TCCTTGTTAGCTCAGTTGGT 1 chrXII:875280-875495 ( 39) TCCTTGTTAGCTCAGTTGGT 1 chrX:233846-233946 ( 63) TTCCTCGTGGCCCAATGGTC 1 chrIII:149794-150030 ( 58) AGCGCCGTGGCGCAGTGGAA 1 chrXV:710095-710273 ( 67) AGCGCCGTGGCGCAGTGGAA 1 chrV:100022-100222 ( 61) AGCGCCGTGGCGCAGTGGAA 1 chrX:517827-517927 ( 33) AGCGCCGTGGCGCAGTGGAA 1 chrIII:123517-123746 ( 48) GGGCGTGTGGTCTAGAGGTA 1 chrV:431221-431462 ( 56) GCCCTCTTGGGCTAGCGGTA 1 chrXIV:631772-631965 ( 80) GGGCGTGTGGTCTAGAGGTA 1 chrVIII:62657-62912 ( 21) GCCATCTTAGTATAGTGGTT 1 chrXIII:362963-363195 ( 35) GCCATCTTAGTATAGTGGTT 1 chrVII:110569-110770 ( 58) GCCATCTTAGTATAGTGGTT 1 chrIV:1095372-1095565 ( 24) GCGGACTTAGCTCAGTTGGG 1 chrVII:700573-700837 ( 20) GGTACTCTGGCCGAGTGGTC 1 chrXII:818517-818736 ( 33) GCTCCTCTAGTGCAATGGTT 1 chrXVI:56141-56326 ( 72) GAAGCGGTGGCTCAATGGTA 1 chrVII:878632-878941 ( 60) GAAGCGGTGGCTCAATGGTA 1 chrXI:302810-303050 ( 38) GAAGCGGTGGCTCAATGGTA 1 chrX:422858-422958 ( 20) GCTTCAGTAGCTCAGTAGGA 1 chrVII:287303-287584 ( 43) GAAGCGGTGGCTCAATGGTA 1 chrX:415924-416024 ( 29) GAAGCGGTGGCTCAATGGTA 1 chrXIII:572827-573070 ( 38) GCTTCAGTAGCTCAGTAGGA 1 chrIV:1175723-1175992 ( 22) GCTTCAGTAGCTCAGTAGGA 1 chrII:36315-36501 ( 40) GCGGATTTAGCTCAGTTGGG 1 chrXVI:622525-622783 ( 8) GCGGATTTAGCTCAGTTGGG 1 chrVII:440691-440932 ( 27) GCGGATTTAGCTCAGTTGGG 1 chrVI:210597-210833 ( 23) CTCTCGGTAGCCAAGTTGGT 1 chrXIII:837828-838014 ( 57) CTCTCGGTAGCCAAGTTGGT 1 chrXIII:168792-168895 ( 2) CTCTCGGTAGCCAAGTTGGT 1 chrXV:288075-288297 ( 56) CTCTCGGTAGCCAAGTTGGT 1 chrX:355300-355400 ( 52) TCCGTGATAGTTTAATGGTC 1 chrVII:544530-544782 ( 23) TCCGTGATAGTTTAATGGTC 1 chrXII:793783-794014 ( 70) TCCGTGATAGTTTAATGGTC 1 chrX:204523-204623 ( 60) TCCGTGATAGTTTAATGGTC 1 chrXII:427029-427188 ( 74) TCCGTGATAGTTTAATGGTC 1 chrXIII:463467-463627 ( 57) TCCGTGATAGTTTAATGGTC 1 chrX:541442-541542 ( 38) TCCGTGATAGTTTAATGGTC 1 chrVIII:475653-475848 ( 59) GTTCCAATAGTGTAGCGGCT 1 chrIV:1075443-1075654 ( 27) GTTCCAATAGTGTAGCGGCT 1 chrIV:1017134-1017372 ( 56) TCCGATGTAGTGTAACGGCT 1 chrIX:197438-197724 ( 61) TCCGATGTAGTGTAACGGCT 1 chrX:115883-115983 ( 35) TCCGATATAGTGTAACGGCT 1 chrII:645040-645293 ( 51) TCCGATATAGTGTAACGGCT 1 chrV:176992-177205 ( 51) TCCGATATAGTGTAACGGCT 1 chrXII:797073-797316 ( 34) TCCGATATAGTGTAACGGCT 1 chrXIII:290682-290916 ( 52) TCCGATATAGTGTAACGGCT 1 chrIX:370209-370613 ( 56) TCCGATATAGTGTAACGGCT 1 chrV:487287-487499 ( 40) TCCGATATAGTGTAACGGCT 1 chrV:354723-355127 ( 59) TCCGATATAGTGTAACGGCT 1 chrXV:620406-620647 ( 64) ATTTTCGTGGTGAAGTTGTT 1 chrXVI:294445-294849 ( 53) TCAGGCTTGGTTTAGCAGGT 1 chrVII:799617-800021 ( 61) CCCTTTATAGTGTTGTCGTT 1 chrII:405890-406294 ( 22) GCCTCCTTAGTACAGTGTAA 1 chrXII:460379-460829 ( 29) TGCTTCATGGAGCAGTTTTT 1 chrXIII:91877-92033 ( 76) CCCCTTTTGGCGCTTTGGAT 1 chrVII:364166-364570 ( 62) TCCAAGGTGGTTCTTTCGGT 1 chrXI:430707-431111 ( 22) TTCTGAGTAGCGTAGTTTAA 1 chrIV:405347-405751 ( 81) GCCTTAATATTTTATTTGGC 1 chrXII:673392-673796 ( 9) GGTCGGTTTTTCCATTCGGT 1 chrXV:159385-159690 ( 76) TCGTTGGTAGATACGTTGTT 1 chrIV:340748-341152 ( 52) TATGCTATGGCTCATTGTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYBNBDTGGYBYAGTGGKT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48357 bayes= 6.54722 E= 8.1e-324 -343 -238 203 -79 -243 136 103 -175 -258 124 12 -2 -166 99 16 6 -66 53 16 6 -116 73 39 -2 -36 -396 116 6 -1405 -1405 -1405 166 1 -1405 188 -574 -1405 -1405 243 -475 -475 169 -496 30 -375 112 82 -32 -166 84 -44 46 163 -496 -1405 -416 -29 -1405 195 -343 -475 -88 -1405 149 -375 -6 168 -58 -1405 -1405 241 -375 -275 -80 106 56 -39 -80 -297 99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYBNBDTGGYBYAGTGGKT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 170 E= 8.1e-324 0.029412 0.035294 0.752941 0.182353 0.058824 0.470588 0.376471 0.094118 0.052941 0.435294 0.200000 0.311765 0.100000 0.364706 0.205882 0.329412 0.200000 0.264706 0.205882 0.329412 0.141176 0.305882 0.241176 0.311765 0.247059 0.011765 0.411765 0.329412 0.000000 0.000000 0.000000 1.000000 0.317647 0.000000 0.676471 0.005882 0.000000 0.000000 0.988235 0.011765 0.011765 0.594118 0.005882 0.388235 0.023529 0.400000 0.323529 0.252941 0.100000 0.329412 0.135294 0.435294 0.976471 0.005882 0.000000 0.017647 0.258824 0.000000 0.711765 0.029412 0.011765 0.100000 0.000000 0.888235 0.023529 0.176471 0.588235 0.211765 0.000000 0.000000 0.976471 0.023529 0.047059 0.105882 0.382353 0.464706 0.241176 0.105882 0.023529 0.629412 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYBNBDTGGYBYAGTGGKT MEME-1 regular expression -------------------------------------------------------------------------------- G[CG][CTG][CTG][TCGA][TCG][GTA]T[GA]G[CT][CGT][TC]A[GA]T[GT]G[TG][TA] -------------------------------------------------------------------------------- Time 350.15 secs. ******************************************************************************** ******************************************************************************** MOTIF ATCRKRAGRTCMBSGGTTCGABYCCSV MEME-2 width = 27 sites = 57 llr = 1245 E-value = 8.4e-266 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATCRKRAGRTCMBSGGTTCGABYCCSV MEME-2 Description -------------------------------------------------------------------------------- Simplified A 8::4157141:41:2::::2a2::::3 pos.-specific C 12711::1:17443::::a::25a864 probability G :23454386::2368a:::8:3:::34 matrix T 16:131:1:73:3:::aa:::35:2:: bits 2.4 * * * 2.2 * * * 2.0 * * * 1.7 ****** * Relative 1.5 * ******* * Entropy 1.2 * ** * ******** *** (31.5 bits) 1.0 * *** * ******** **** 0.7 * * ***** ******** ***** 0.5 *** ***************** ***** 0.2 ********************* ***** 0.0 --------------------------- Multilevel ATCGGAAGGTCACGGGTTCGATCCCCG consensus GGATGG A TCGC GT GC sequence T C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCRKRAGRTCMBSGGTTCGABYCCSV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chrIII:123517-123746 - 5 5.12e-14 TCGCTTAGGG TGCGGGAGGTCCCGGGTTCGAGTCCCG GCTC chrXIV:631772-631965 - 37 5.12e-14 TCGCTTAGGG TGCGGGAGGTCCCGGGTTCGAGTCCCG GCTCGCCCCC chrVI:226641-226830 - 12 2.26e-13 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrV:435697-435911 - 7 2.26e-13 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCCCC TACAGG chrVII:876284-876563 + 58 2.26e-13 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrIV:1352404-1352641 - 3 2.26e-13 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCCCC TA chrVII:122221-122407 + 42 2.26e-13 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrIV:1201626-1201905 + 72 2.26e-13 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCCCC TA chrVII:185627-185884 - 18 2.26e-13 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrX:355300-355400 + 6 1.96e-12 TTCTA ATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGC chrXIII:747890-748008 - 2 1.96e-12 CTGACTTCTA ATCAGAAGATTATGGGTTCGACCCCCA T chrVII:828608-828929 - 14 1.96e-12 CTGACTTCTA ATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGC chrIV:568770-569043 + 62 1.96e-12 CTGACTTCTA ATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGC chrV:138557-138927 + 10 1.96e-12 TGACTTCTA ATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGT chrVII:405344-405748 + 10 1.96e-12 TGACTTCTA ATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGC chrXII:1052026-1052170 - 32 6.40e-12 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXVI:880234-880462 - 7 6.40e-12 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCCGC TAGAGA chrV:443159-443331 - 16 6.40e-12 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXI:578863-579152 + 68 9.24e-12 AAGCAAGGAT ACCGAAATGTCAGGGGTTCGAGCCCCC TATGAG chrVII:700883-701138 - 2 9.24e-12 AAGCAAGGAT ACCGAAATGTCAGGGGTTCGAGCCCCC T chrV:61785-62041 - 36 1.04e-11 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrX:531790-531890 + 30 1.04e-11 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrIII:142617-142875 - 14 1.04e-11 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCCGG GCTTGCGCAT chrVI:180876-181128 - 31 1.04e-11 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrXVI:860281-860508 + 70 1.04e-11 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCCGG GCTT chrI:166179-166391 + 69 1.48e-11 TTCCCTTGCA AGGAAGAGGTCATCGGTTCGATTCCGG TTGCG chrXII:214702-215106 - 38 1.48e-11 TTCCCTTGCA AGGAAGAGGTCATCGGTTCGATTCCGG TTGCGTCCAT chrX:538479-538579 + 53 1.66e-11 CTCCCTCCTA AGGAGAAGACTGCGGGTTCGAGTCCCG TACGGAACGT chrVII:541731-542021 + 60 2.32e-11 TCACGCTTTC ACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrXII:797073-797316 + 70 2.32e-11 TCACGCTTTC ACCGTGGAGACCGGGGTTCGACTCCCC GTAT chrIV:1017134-1017372 - 13 2.32e-11 TCACGTTCTC ACCGTGGAGACCGGGGTTCGACTCCCC GCTTCGGAGT chrVII:328529-328744 + 33 2.32e-11 TCACGCTTTC ACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrXI:46651-46907 - 15 8.08e-11 CGCACTCGTA ATGCGGGGATCGTGGGTTCAATTCCCA CAGAGGGCAT chrIV:802536-802940 - 52 9.81e-11 TTCGGTTTTG ATCCGGACAACCCCGGTTCGAATCCGG GTAGGACCTC chrXII:448578-448807 - 17 9.81e-11 TTCGGTTTTG ATCCGGACAACCCCGGTTCGAATCCGG GTAGGACCTT chrXV:464340-464744 + 24 2.92e-10 AGACAAAGCA TGCGAGAGGCCCTGGGTTCAATTCCCA GCTCGCCCCT chrXV:976270-976674 + 36 3.18e-10 CAGTCTCATA ATCTGAAGGTCGAGAGTTCGAACCTCC CCTGGAGCAA chrX:422858-422958 + 57 3.18e-10 CAGTCTCATA ATCTGAAGGTCGAGAGTTCGAACCTCC CCTGGAGCAC chrIV:1175723-1175992 + 59 3.18e-10 CAGTCTCATA ATCTGAAGGTCGAGAGTTCGAACCTCC CCTGGAGCAT chrIV:488731-488945 - 18 3.76e-10 CGCCTTTACA CGGCGAAGATCCCGAGTTCGAACCTCG GTTGGATCAG chrXV:113695-113969 + 57 3.76e-10 CACACTAGTA ATGTGGAGATCATCGGTTCAAATCCGA TTGGAAGCAT chrX:59029-59129 - 12 3.76e-10 CACACTAGTA ATGTGGAGATCATCGGTTCAAATCCGA TTGGAAGCAT chrIV:434089-434493 - 32 3.76e-10 CACACTAGTA ATGTGGAGATCATCGGTTCAAATCCGA TTGGAAGCAT chrVII:774248-774500 + 62 4.09e-10 TCCCTTAGCA TGGGAGAGGTCTCCGGTTCGATTCCGG ACTCGTCCAA chrVIII:475653-475848 - 15 4.09e-10 TGCCTTCACA CGGCAAAGGTCCCGAGTTCGATCCTCG GTTGGAACAT chrXIII:321077-321300 - 18 4.09e-10 TCCCTTAGCA TGGGAGAGGTCTCCGGTTCGATTCCGG ACTCGTCCAT chrXV:110872-111101 - 35 4.44e-10 CCACCCTTCC AAGGTGGGGACACGGGTTCGATTCTCG TACCGCTCAT chrXV:663719-664002 - 11 7.75e-10 CTGCTTAACA CGCAGAACGTCCCCAGTTCGATCCTGG GCGAAATCGT chrXIII:586641-586747 - 1 7.75e-10 CTGCTTAACA CGCAGAACGTCCCCAGTTCGATCCTGG chrXII:975921-976092 - 36 1.13e-09 GCGACTGTTA ATCGCAAGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXIV:102655-102876 + 39 1.13e-09 GCGACTGTTA ATCGCAAGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrVI:137400-137631 - 30 1.13e-09 GCGACTGTTA ATCGCAAGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXVI:560070-560379 - 33 1.22e-09 CGGTCAAGTT ATCTGGAGGTCCTGTGTTCGATCCACA GAATTCGCAT chrXIII:168792-168895 + 55 2.00e-09 TCACTACGAA ATCTTGAGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrXII:374336-374460 + 44 2.80e-09 CTGGCTACGA ACCAGAAGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrXI:490886-491111 + 57 2.80e-09 CTGGCTACGA ACCAGAAGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrXII:818517-818736 + 69 9.87e-09 CATTCTTCCG GTGGCTGTGATCCGGGTTCGAGTCCCG GGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCRKRAGRTCMBSGGTTCGABYCCSV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123517-123746 5.1e-14 4_[-2]_69 chrXIV:631772-631965 5.1e-14 36_[-2]_37 chrVI:226641-226830 2.3e-13 11_[-2]_62 chrV:435697-435911 2.3e-13 6_[-2]_67 chrVII:876284-876563 2.3e-13 57_[+2]_16 chrIV:1352404-1352641 2.3e-13 2_[-2]_71 chrVII:122221-122407 2.3e-13 41_[+2]_32 chrIV:1201626-1201905 2.3e-13 71_[+2]_2 chrVII:185627-185884 2.3e-13 17_[-2]_56 chrX:355300-355400 2e-12 5_[+2]_68 chrXIII:747890-748008 2e-12 1_[-2]_72 chrVII:828608-828929 2e-12 13_[-2]_60 chrIV:568770-569043 2e-12 61_[+2]_12 chrV:138557-138927 2e-12 9_[+2]_64 chrVII:405344-405748 2e-12 9_[+2]_64 chrXII:1052026-1052170 6.4e-12 31_[-2]_42 chrXVI:880234-880462 6.4e-12 6_[-2]_67 chrV:443159-443331 6.4e-12 15_[-2]_58 chrXI:578863-579152 9.2e-12 67_[+2]_6 chrVII:700883-701138 9.2e-12 1_[-2]_72 chrV:61785-62041 1e-11 35_[-2]_38 chrX:531790-531890 1e-11 29_[+2]_44 chrIII:142617-142875 1e-11 13_[-2]_60 chrVI:180876-181128 1e-11 30_[-2]_43 chrXVI:860281-860508 1e-11 69_[+2]_4 chrI:166179-166391 1.5e-11 68_[+2]_5 chrXII:214702-215106 1.5e-11 37_[-2]_36 chrX:538479-538579 1.7e-11 52_[+2]_21 chrVII:541731-542021 2.3e-11 59_[+2]_14 chrXII:797073-797316 2.3e-11 69_[+2]_4 chrIV:1017134-1017372 2.3e-11 12_[-2]_61 chrVII:328529-328744 2.3e-11 32_[+2]_41 chrXI:46651-46907 8.1e-11 14_[-2]_59 chrIV:802536-802940 9.8e-11 51_[-2]_22 chrXII:448578-448807 9.8e-11 16_[-2]_57 chrXV:464340-464744 2.9e-10 23_[+2]_50 chrXV:976270-976674 3.2e-10 35_[+2]_38 chrX:422858-422958 3.2e-10 56_[+2]_17 chrIV:1175723-1175992 3.2e-10 58_[+2]_15 chrIV:488731-488945 3.8e-10 17_[-2]_56 chrXV:113695-113969 3.8e-10 56_[+2]_17 chrX:59029-59129 3.8e-10 11_[-2]_62 chrIV:434089-434493 3.8e-10 31_[-2]_42 chrVII:774248-774500 4.1e-10 61_[+2]_12 chrVIII:475653-475848 4.1e-10 14_[-2]_59 chrXIII:321077-321300 4.1e-10 17_[-2]_56 chrXV:110872-111101 4.4e-10 34_[-2]_39 chrXV:663719-664002 7.8e-10 10_[-2]_63 chrXIII:586641-586747 7.8e-10 [-2]_73 chrXII:975921-976092 1.1e-09 35_[-2]_38 chrXIV:102655-102876 1.1e-09 38_[+2]_35 chrVI:137400-137631 1.1e-09 29_[-2]_44 chrXVI:560070-560379 1.2e-09 32_[-2]_41 chrXIII:168792-168895 2e-09 54_[+2]_19 chrXII:374336-374460 2.8e-09 43_[+2]_30 chrXI:490886-491111 2.8e-09 56_[+2]_17 chrXII:818517-818736 9.9e-09 68_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCRKRAGRTCMBSGGTTCGABYCCSV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATCRKRAGRTCMBSGGTTCGABYCCSV width=27 seqs=57 chrIII:123517-123746 ( 5) TGCGGGAGGTCCCGGGTTCGAGTCCCG 1 chrXIV:631772-631965 ( 37) TGCGGGAGGTCCCGGGTTCGAGTCCCG 1 chrVI:226641-226830 ( 12) ATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrV:435697-435911 ( 7) ATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrVII:876284-876563 ( 58) ATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrIV:1352404-1352641 ( 3) ATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrVII:122221-122407 ( 42) ATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrIV:1201626-1201905 ( 72) ATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrVII:185627-185884 ( 18) ATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrX:355300-355400 ( 6) ATCAGAAGATTATGGGTTCGACCCCCA 1 chrXIII:747890-748008 ( 2) ATCAGAAGATTATGGGTTCGACCCCCA 1 chrVII:828608-828929 ( 14) ATCAGAAGATTATGGGTTCGACCCCCA 1 chrIV:568770-569043 ( 62) ATCAGAAGATTATGGGTTCGACCCCCA 1 chrV:138557-138927 ( 10) ATCAGAAGATTATGGGTTCGACCCCCA 1 chrVII:405344-405748 ( 10) ATCAGAAGATTATGGGTTCGACCCCCA 1 chrXII:1052026-1052170 ( 32) ACGCGGGGATCAGCGGTTCGATCCCGC 1 chrXVI:880234-880462 ( 7) ACGCGGGGATCAGCGGTTCGATCCCGC 1 chrV:443159-443331 ( 16) ACGCGGGGATCAGCGGTTCGATCCCGC 1 chrXI:578863-579152 ( 68) ACCGAAATGTCAGGGGTTCGAGCCCCC 1 chrVII:700883-701138 ( 2) ACCGAAATGTCAGGGGTTCGAGCCCCC 1 chrV:61785-62041 ( 36) ATCGTTGGGCCCCCGGTTCGATTCCGG 1 chrX:531790-531890 ( 30) ATCGTTGGGCCCCCGGTTCGATTCCGG 1 chrIII:142617-142875 ( 14) ATCGTTGGGCCCCCGGTTCGATTCCGG 1 chrVI:180876-181128 ( 31) ATCGTTGGGCCCCCGGTTCGATTCCGG 1 chrXVI:860281-860508 ( 70) ATCGTTGGGCCCCCGGTTCGATTCCGG 1 chrI:166179-166391 ( 69) AGGAAGAGGTCATCGGTTCGATTCCGG 1 chrXII:214702-215106 ( 38) AGGAAGAGGTCATCGGTTCGATTCCGG 1 chrX:538479-538579 ( 53) AGGAGAAGACTGCGGGTTCGAGTCCCG 1 chrVII:541731-542021 ( 60) ACCGTGGAGACCGGGGTTCGACTCCCC 1 chrXII:797073-797316 ( 70) ACCGTGGAGACCGGGGTTCGACTCCCC 1 chrIV:1017134-1017372 ( 13) ACCGTGGAGACCGGGGTTCGACTCCCC 1 chrVII:328529-328744 ( 33) ACCGTGGAGACCGGGGTTCGACTCCCC 1 chrXI:46651-46907 ( 15) ATGCGGGGATCGTGGGTTCAATTCCCA 1 chrIV:802536-802940 ( 52) ATCCGGACAACCCCGGTTCGAATCCGG 1 chrXII:448578-448807 ( 17) ATCCGGACAACCCCGGTTCGAATCCGG 1 chrXV:464340-464744 ( 24) TGCGAGAGGCCCTGGGTTCAATTCCCA 1 chrXV:976270-976674 ( 36) ATCTGAAGGTCGAGAGTTCGAACCTCC 1 chrX:422858-422958 ( 57) ATCTGAAGGTCGAGAGTTCGAACCTCC 1 chrIV:1175723-1175992 ( 59) ATCTGAAGGTCGAGAGTTCGAACCTCC 1 chrIV:488731-488945 ( 18) CGGCGAAGATCCCGAGTTCGAACCTCG 1 chrXV:113695-113969 ( 57) ATGTGGAGATCATCGGTTCAAATCCGA 1 chrX:59029-59129 ( 12) ATGTGGAGATCATCGGTTCAAATCCGA 1 chrIV:434089-434493 ( 32) ATGTGGAGATCATCGGTTCAAATCCGA 1 chrVII:774248-774500 ( 62) TGGGAGAGGTCTCCGGTTCGATTCCGG 1 chrVIII:475653-475848 ( 15) CGGCAAAGGTCCCGAGTTCGATCCTCG 1 chrXIII:321077-321300 ( 18) TGGGAGAGGTCTCCGGTTCGATTCCGG 1 chrXV:110872-111101 ( 35) AAGGTGGGGACACGGGTTCGATTCTCG 1 chrXV:663719-664002 ( 11) CGCAGAACGTCCCCAGTTCGATCCTGG 1 chrXIII:586641-586747 ( 1) CGCAGAACGTCCCCAGTTCGATCCTGG 1 chrXII:975921-976092 ( 36) ATCGCAAGATCGTGAGTTCAACCCTCA 1 chrXIV:102655-102876 ( 39) ATCGCAAGATCGTGAGTTCAACCCTCA 1 chrVI:137400-137631 ( 30) ATCGCAAGATCGTGAGTTCAACCCTCA 1 chrXVI:560070-560379 ( 33) ATCTGGAGGTCCTGTGTTCGATCCACA 1 chrXIII:168792-168895 ( 55) ATCTTGAGATCGGGCGTTCGACTCGCC 1 chrXII:374336-374460 ( 44) ACCAGAAGATTCCAGGTTCAAGTCCTG 1 chrXI:490886-491111 ( 57) ACCAGAAGATTCCAGGTTCAAGTCCTG 1 chrXII:818517-818736 ( 69) GTGGCTGTGATCCGGGTTCGAGTCCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCRKRAGRTCMBSGGTTCGABYCCSV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 44178 bayes= 10.2204 E= 8.4e-266 138 -139 -339 -185 -417 7 20 87 -1248 197 61 -1248 15 -39 100 -117 -117 -139 137 0 64 -1248 113 -159 122 -1248 52 -1248 -217 -139 213 -259 35 -1248 170 -1248 -117 -58 -1248 122 -1248 193 -1248 -8 41 107 -22 -317 -259 93 70 -8 -317 86 178 -1248 -85 -339 210 -417 -1248 -1248 244 -1248 -1248 -1248 -1248 166 -1248 -1248 -1248 166 -1248 244 -1248 -1248 -85 -1248 217 -1248 166 -1248 -1248 -1248 -100 42 52 8 -1248 147 -1248 64 -1248 244 -1248 -1248 -417 207 -339 -71 -1248 178 86 -317 -26 93 107 -1248 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCRKRAGRTCMBSGGTTCGABYCCSV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 57 E= 8.4e-266 0.824561 0.070175 0.017544 0.087719 0.017544 0.192982 0.210526 0.578947 0.000000 0.719298 0.280702 0.000000 0.350877 0.140351 0.368421 0.140351 0.140351 0.070175 0.473684 0.315789 0.491228 0.000000 0.403509 0.105263 0.736842 0.000000 0.263158 0.000000 0.070175 0.070175 0.807018 0.052632 0.403509 0.000000 0.596491 0.000000 0.140351 0.122807 0.000000 0.736842 0.000000 0.701754 0.000000 0.298246 0.421053 0.385965 0.157895 0.035088 0.052632 0.350877 0.298246 0.298246 0.035088 0.333333 0.631579 0.000000 0.175439 0.017544 0.789474 0.017544 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.175439 0.000000 0.824561 0.000000 1.000000 0.000000 0.000000 0.000000 0.157895 0.245614 0.263158 0.333333 0.000000 0.508772 0.000000 0.491228 0.000000 1.000000 0.000000 0.000000 0.017544 0.771930 0.017544 0.192982 0.000000 0.631579 0.333333 0.035088 0.263158 0.350877 0.385965 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCRKRAGRTCMBSGGTTCGABYCCSV MEME-2 regular expression -------------------------------------------------------------------------------- A[TG][CG][GA][GT][AG][AG]G[GA]T[CT][AC][CGT][GC]GGTTCGA[TGC][CT]CC[CG][GCA] -------------------------------------------------------------------------------- Time 651.31 secs. ******************************************************************************** ******************************************************************************** MOTIF ARGGCGYMAGACTVD MEME-3 width = 15 sites = 51 llr = 682 E-value = 1.6e-070 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARGGCGYMAGACTVD MEME-3 Description -------------------------------------------------------------------------------- Simplified A a62:::246:9::23 pos.-specific C ::2:a:3511:8:4: probability G :46a:a11:9:::33 matrix T ::::::5:3:12a24 bits 2.4 *** 2.2 *** 2.0 *** * 1.7 * *** * * Relative 1.5 * *** * ** Entropy 1.2 * *** **** (19.3 bits) 1.0 ****** **** 0.7 ****** * **** 0.5 ****** ****** 0.2 *************** 0.0 --------------- Multilevel AAGGCGTCAGACTCT consensus GC CAT T GA sequence AG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARGGCGYMAGACTVD MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrVI:210597-210833 - 6 1.32e-08 AAGTTGGTTT AAGGCGCAAGACTGT AATTT chrXIII:837828-838014 + 79 1.32e-08 AAGTTGGTTT AAGGCGCAAGACTGT AATTTAC chrXIII:168792-168895 + 24 1.32e-08 AAGTTGGTTT AAGGCGCAAGACTGT AATTTATCAC chrXV:288075-288297 + 78 1.32e-08 AAGTTGGTTT AAGGCGCAAGACTGT AATTTATC chrIII:227818-228087 + 60 1.23e-07 CCGAGTGGTT AAGGCGAGAGACTCG AATGGAATAA chrV:288396-288616 - 34 1.60e-07 CCGAGTGGTT AAGGCGACAGACTTG AAATCTGTTG chrXVI:560070-560379 - 81 1.60e-07 TTGGG AGAGCGCCAGACTGA AGAAAAAACT chrIV:1095372-1095565 - 9 1.60e-07 CTCAGTTGGG AGAGCGCCAGACTGA AGAAAAAA chrII:36315-36501 + 60 1.60e-07 CTCAGTTGGG AGAGCGCCAGACTGA AGAAAAACTT chrVII:440691-440932 - 12 1.60e-07 CTCAGTTGGG AGAGCGCCAGACTGA AGAAAAAACT chrVI:226641-226830 - 41 2.27e-07 CGCAATCGGT AGCGCGTATGACTCT TAATCATAAG chrXIII:480554-480817 - 24 2.27e-07 CGCAATCGGT AGCGCGTATGACTCT TAATCATAAG chrXII:975921-976092 - 65 2.27e-07 CAAGTTGGTT AAGGCGTGCGACTGT TAATCGCAAG chrIII:127593-127858 + 62 2.27e-07 CAAGTTGGTT AAGGCGTGCGACTGT TAATCGCAAG chrV:435697-435911 - 36 2.27e-07 CGCAATCGGT AGCGCGTATGACTCT TAATCATAAG chrVII:731025-731257 + 67 2.27e-07 CAAGTTGGTT AAGGCGTGCGACTGT TAATCGCAAG chrXVI:810622-810730 + 71 2.27e-07 CAAGTTGGTT AAGGCGTGCGACTGT TAATCGCAAG chrIX:300158-300427 - 24 2.27e-07 CGCAATCGGT AGCGCGTATGACTCT TAATCATAAG chrVII:876284-876563 + 41 2.27e-07 CGCAATCGGT AGCGCGTATGACTCT TAATCATAAG chrIV:1352404-1352641 - 32 2.27e-07 CGCAATCGGT AGCGCGTATGACTCT TAATCATAAG chrVII:122221-122407 + 25 2.27e-07 CGCAATCGGT AGCGCGTATGACTCT TAATCATAAG chrX:414843-414943 + 76 2.27e-07 CGCAATCGGT AGCGCGTATGACTCT TAATCATAAG chrV:135381-135596 - 25 2.27e-07 CGCAATCGGT AGCGCGTATGACTCT TAATCATAAG chrXIV:102655-102876 + 22 2.27e-07 CAAGTTGGTT AAGGCGTGCGACTGT TAATCGCAAG chrIV:1201626-1201905 + 55 2.27e-07 CGCAATCGGT AGCGCGTATGACTCT TAATCATAAG chrVI:137400-137631 - 59 2.27e-07 CAAGTTGGTT AAGGCGTGCGACTGT TAATCGCAAG chrVII:185627-185884 - 47 2.27e-07 CGCAATCGGT AGCGCGTATGACTCT TAATCATAAG chrII:9389-9793 + 63 2.90e-07 CGAGTGGTCT AAGGCGGCAGACTTA AGATCTGTTG chrIV:519540-519944 + 72 2.90e-07 CGAGTGGTCT AAGGCGGCAGACTTA AGATCTGTTG chrXIV:726146-726277 - 21 2.90e-07 CGAGTGGTCT AAGGCGGCAGACTTA AGATCTGTTG chrXII:962935-963117 - 44 2.90e-07 CGAGTGGTCT AAGGCGGCAGACTTA AGATCTGTTG chrXI:458503-458692 + 31 3.28e-07 CGAGCGGTCT AAGGCGCCTGATTCA AGAAATATCT chrIII:90760-91008 + 46 3.28e-07 CGAGCGGTCT AAGGCGCCTGATTCA AGAAATATCT chrIII:295428-295548 + 66 4.15e-07 CCAAGTTGGT AAGGCGCCACACTAG TAATGTGGAG chrXV:113695-113969 + 40 4.15e-07 CCAAGTTGGT AAGGCGCCACACTAG TAATGTGGAG chrX:59029-59129 - 41 4.15e-07 CCAAGTTGGT AAGGCGCCACACTAG TAATGTGGAG chrIV:434089-434493 - 61 4.15e-07 CCAAGTTGGT AAGGCGCCACACTAG TAATGTGGAG chrXIV:104698-104927 + 63 4.15e-07 CCAAGTTGGT AAGGCGCCACACTAG TAATGTGGAG chrXII:592491-592696 - 41 5.63e-07 CGAGTGGTTT AAGGCGTCAGATTTA GGTGGATTTA chrXII:732019-732225 + 39 5.63e-07 CGAGTGGTTT AAGGCGTCAGATTTA GGTGGATTTA chrX:617801-617901 + 54 5.63e-07 CGAGTGGTTT AAGGCGTCAGATTTA GGTGGATTTA chrVIII:132974-133229 - 22 1.33e-06 CCGAGTGGTT AAGGCGAAAGATTAG AAATCTTTTG chrXIII:259116-259332 - 31 1.33e-06 CCGAGTGGTT AAGGCGAAAGATTAG AAATCTTTTG chrXII:167887-168142 - 27 1.33e-06 CCGAGTGGTT AAGGCGAAAGATTAG AAATCTTTTG chrIV:437647-437869 + 84 1.33e-06 CCGAGTGGTT AAGGCGAAAGATTAG AA chrIV:1305535-1305741 + 62 1.33e-06 CCGAGTGGTT AAGGCGAAAGATTAG AAATCTTTTG chrII:227049-227151 + 45 1.33e-06 CCGAGTGGTT AAGGCGAAAGATTAG AAATCTTTTG chrXV:976270-976674 + 19 1.43e-06 CTCAGTAGGA AGAGCGTCAGTCTCA TAATCTGAAG chrX:422858-422958 + 40 1.43e-06 CTCAGTAGGA AGAGCGTCAGTCTCA TAATCTGAAG chrXIII:572827-573070 - 23 1.43e-06 CTCAGTAGGA AGAGCGTCAGTCTCA TAATCTGAAG chrIV:1175723-1175992 + 42 1.43e-06 CTCAGTAGGA AGAGCGTCAGTCTCA TAATCTGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARGGCGYMAGACTVD MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVI:210597-210833 1.3e-08 5_[-3]_80 chrXIII:837828-838014 1.3e-08 78_[+3]_7 chrXIII:168792-168895 1.3e-08 23_[+3]_62 chrXV:288075-288297 1.3e-08 77_[+3]_8 chrIII:227818-228087 1.2e-07 59_[+3]_26 chrV:288396-288616 1.6e-07 33_[-3]_52 chrXVI:560070-560379 1.6e-07 80_[-3]_5 chrIV:1095372-1095565 1.6e-07 8_[-3]_77 chrII:36315-36501 1.6e-07 59_[+3]_26 chrVII:440691-440932 1.6e-07 11_[-3]_74 chrVI:226641-226830 2.3e-07 40_[-3]_45 chrXIII:480554-480817 2.3e-07 23_[-3]_62 chrXII:975921-976092 2.3e-07 64_[-3]_21 chrIII:127593-127858 2.3e-07 61_[+3]_24 chrV:435697-435911 2.3e-07 35_[-3]_50 chrVII:731025-731257 2.3e-07 66_[+3]_19 chrXVI:810622-810730 2.3e-07 70_[+3]_15 chrIX:300158-300427 2.3e-07 23_[-3]_62 chrVII:876284-876563 2.3e-07 40_[+3]_45 chrIV:1352404-1352641 2.3e-07 31_[-3]_54 chrVII:122221-122407 2.3e-07 24_[+3]_61 chrX:414843-414943 2.3e-07 75_[+3]_10 chrV:135381-135596 2.3e-07 24_[-3]_61 chrXIV:102655-102876 2.3e-07 21_[+3]_64 chrIV:1201626-1201905 2.3e-07 54_[+3]_31 chrVI:137400-137631 2.3e-07 58_[-3]_27 chrVII:185627-185884 2.3e-07 46_[-3]_39 chrII:9389-9793 2.9e-07 62_[+3]_23 chrIV:519540-519944 2.9e-07 71_[+3]_14 chrXIV:726146-726277 2.9e-07 20_[-3]_65 chrXII:962935-963117 2.9e-07 43_[-3]_42 chrXI:458503-458692 3.3e-07 30_[+3]_55 chrIII:90760-91008 3.3e-07 45_[+3]_40 chrIII:295428-295548 4.2e-07 65_[+3]_20 chrXV:113695-113969 4.2e-07 39_[+3]_46 chrX:59029-59129 4.2e-07 40_[-3]_45 chrIV:434089-434493 4.2e-07 60_[-3]_25 chrXIV:104698-104927 4.2e-07 62_[+3]_23 chrXII:592491-592696 5.6e-07 40_[-3]_45 chrXII:732019-732225 5.6e-07 38_[+3]_47 chrX:617801-617901 5.6e-07 53_[+3]_32 chrVIII:132974-133229 1.3e-06 21_[-3]_64 chrXIII:259116-259332 1.3e-06 30_[-3]_55 chrXII:167887-168142 1.3e-06 26_[-3]_59 chrIV:437647-437869 1.3e-06 83_[+3]_2 chrIV:1305535-1305741 1.3e-06 61_[+3]_24 chrII:227049-227151 1.3e-06 44_[+3]_41 chrXV:976270-976674 1.4e-06 18_[+3]_67 chrX:422858-422958 1.4e-06 39_[+3]_46 chrXIII:572827-573070 1.4e-06 22_[-3]_63 chrIV:1175723-1175992 1.4e-06 41_[+3]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARGGCGYMAGACTVD MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARGGCGYMAGACTVD width=15 seqs=51 chrVI:210597-210833 ( 6) AAGGCGCAAGACTGT 1 chrXIII:837828-838014 ( 79) AAGGCGCAAGACTGT 1 chrXIII:168792-168895 ( 24) AAGGCGCAAGACTGT 1 chrXV:288075-288297 ( 78) AAGGCGCAAGACTGT 1 chrIII:227818-228087 ( 60) AAGGCGAGAGACTCG 1 chrV:288396-288616 ( 34) AAGGCGACAGACTTG 1 chrXVI:560070-560379 ( 81) AGAGCGCCAGACTGA 1 chrIV:1095372-1095565 ( 9) AGAGCGCCAGACTGA 1 chrII:36315-36501 ( 60) AGAGCGCCAGACTGA 1 chrVII:440691-440932 ( 12) AGAGCGCCAGACTGA 1 chrVI:226641-226830 ( 41) AGCGCGTATGACTCT 1 chrXIII:480554-480817 ( 24) AGCGCGTATGACTCT 1 chrXII:975921-976092 ( 65) AAGGCGTGCGACTGT 1 chrIII:127593-127858 ( 62) AAGGCGTGCGACTGT 1 chrV:435697-435911 ( 36) AGCGCGTATGACTCT 1 chrVII:731025-731257 ( 67) AAGGCGTGCGACTGT 1 chrXVI:810622-810730 ( 71) AAGGCGTGCGACTGT 1 chrIX:300158-300427 ( 24) AGCGCGTATGACTCT 1 chrVII:876284-876563 ( 41) AGCGCGTATGACTCT 1 chrIV:1352404-1352641 ( 32) AGCGCGTATGACTCT 1 chrVII:122221-122407 ( 25) AGCGCGTATGACTCT 1 chrX:414843-414943 ( 76) AGCGCGTATGACTCT 1 chrV:135381-135596 ( 25) AGCGCGTATGACTCT 1 chrXIV:102655-102876 ( 22) AAGGCGTGCGACTGT 1 chrIV:1201626-1201905 ( 55) AGCGCGTATGACTCT 1 chrVI:137400-137631 ( 59) AAGGCGTGCGACTGT 1 chrVII:185627-185884 ( 47) AGCGCGTATGACTCT 1 chrII:9389-9793 ( 63) AAGGCGGCAGACTTA 1 chrIV:519540-519944 ( 72) AAGGCGGCAGACTTA 1 chrXIV:726146-726277 ( 21) AAGGCGGCAGACTTA 1 chrXII:962935-963117 ( 44) AAGGCGGCAGACTTA 1 chrXI:458503-458692 ( 31) AAGGCGCCTGATTCA 1 chrIII:90760-91008 ( 46) AAGGCGCCTGATTCA 1 chrIII:295428-295548 ( 66) AAGGCGCCACACTAG 1 chrXV:113695-113969 ( 40) AAGGCGCCACACTAG 1 chrX:59029-59129 ( 41) AAGGCGCCACACTAG 1 chrIV:434089-434493 ( 61) AAGGCGCCACACTAG 1 chrXIV:104698-104927 ( 63) AAGGCGCCACACTAG 1 chrXII:592491-592696 ( 41) AAGGCGTCAGATTTA 1 chrXII:732019-732225 ( 39) AAGGCGTCAGATTTA 1 chrX:617801-617901 ( 54) AAGGCGTCAGATTTA 1 chrVIII:132974-133229 ( 22) AAGGCGAAAGATTAG 1 chrXIII:259116-259332 ( 31) AAGGCGAAAGATTAG 1 chrXII:167887-168142 ( 27) AAGGCGAAAGATTAG 1 chrIV:437647-437869 ( 84) AAGGCGAAAGATTAG 1 chrIV:1305535-1305741 ( 62) AAGGCGAAAGATTAG 1 chrII:227049-227151 ( 45) AAGGCGAAAGATTAG 1 chrXV:976270-976674 ( 19) AGAGCGTCAGTCTCA 1 chrX:422858-422958 ( 40) AGAGCGTCAGTCTCA 1 chrXIII:572827-573070 ( 23) AGAGCGTCAGTCTCA 1 chrIV:1175723-1175992 ( 42) AGAGCGTCAGTCTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARGGCGYMAGACTVD MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51342 bayes= 10.485 E= 1.6e-070 166 -1232 -1232 -1232 99 -1232 102 -1232 -101 23 177 -1232 -1232 -1232 244 -1232 -1232 244 -1232 -1232 -1232 -1232 244 -1232 -101 68 -123 57 38 129 -42 -1232 99 -64 -1232 -31 -1232 -91 229 -1232 154 -1232 -1232 -201 -1232 209 -1232 -55 -1232 -1232 -1232 166 -55 94 58 -101 8 -1232 47 38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARGGCGYMAGACTVD MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 51 E= 1.6e-070 1.000000 0.000000 0.000000 0.000000 0.627451 0.000000 0.372549 0.000000 0.156863 0.215686 0.627451 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.156863 0.294118 0.078431 0.470588 0.411765 0.450980 0.137255 0.000000 0.627451 0.117647 0.000000 0.254902 0.000000 0.098039 0.901961 0.000000 0.921569 0.000000 0.000000 0.078431 0.000000 0.784314 0.000000 0.215686 0.000000 0.000000 0.000000 1.000000 0.215686 0.352941 0.274510 0.156863 0.333333 0.000000 0.254902 0.411765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARGGCGYMAGACTVD MEME-3 regular expression -------------------------------------------------------------------------------- A[AG][GC]GCG[TC][CA][AT]GA[CT]T[CGA][TAG] -------------------------------------------------------------------------------- Time 943.00 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:617801-617901 1.71e-08 32_[+1(5.57e-08)]_1_[+3(5.63e-07)]_\ 32 chrII:477301-477705 4.07e-01 100 chrIX:255217-255621 8.18e-01 100 chrVII:883610-884014 4.68e-01 100 chrV:354723-355127 3.85e-02 58_[+1(2.63e-05)]_22 chrXIV:619726-620058 2.06e-01 100 chrXVI:860281-860508 7.11e-12 34_[+1(1.91e-07)]_15_[+2(1.04e-11)]_\ 4 chrVI:101638-102042 7.67e-01 100 chrVII:806807-807211 3.60e-01 100 chrXI:334267-334671 3.62e-01 100 chrV:487287-487499 1.51e-02 39_[-1(2.63e-05)]_41 chrVII:254172-254576 7.05e-01 100 chrIV:520863-521065 2.32e-05 57_[+1(9.85e-08)]_23 chrXIV:104698-104927 1.06e-07 42_[+1(1.48e-07)]_[+3(4.15e-07)]_23 chrI:170263-170667 1.38e-01 100 chrVI:180876-181128 7.11e-12 30_[-2(1.04e-11)]_15_[-1(1.91e-07)]_\ 8 chrIV:568898-569302 9.39e-01 100 chrIII:78427-78628 1.40e-01 100 chrII:235047-235451 8.58e-01 100 chrIII:90760-91008 2.95e-07 24_[+1(3.98e-07)]_1_[+3(3.28e-07)]_\ 40 chrXI:558882-559286 2.75e-01 100 chrIV:1175723-1175992 4.77e-12 21_[+1(4.56e-06)]_[+3(1.43e-06)]_2_\ [+2(3.18e-10)]_15 chrVIII:116066-116350 3.22e-04 1_[-1(1.48e-07)]_79 chrXIII:146927-147331 5.04e-03 100 chrXV:81129-81275 9.18e-01 100 chrXII:499313-499550 7.76e-01 100 chrXIV:302716-303120 3.44e-01 100 chrII:414664-415068 4.15e-01 100 chrXII:214702-215106 4.38e-08 37_[-2(1.48e-11)]_36 chrI:71927-72331 4.11e-01 100 chrXII:233224-233817 4.91e-01 100 chrXIII:321077-321300 2.05e-12 17_[-2(4.09e-10)]_17_[-1(2.40e-09)]_\ 19 chrVII:1048988-1049392 2.27e-02 38_[-1(3.03e-05)]_42 chrVII:771976-772215 3.74e-01 100 chrVII:110569-110770 7.75e-05 14_[-2(1.47e-05)]_16_[-1(2.40e-06)]_\ 23 chrVII:517021-517425 4.99e-01 100 chrVII:185627-185884 4.53e-18 17_[-2(2.26e-13)]_2_[-3(2.27e-07)]_\ [-1(1.86e-08)]_19 chrXIII:549909-550313 5.55e-01 100 chrXIV:631772-631965 6.97e-13 36_[-2(5.12e-14)]_16_[-1(1.62e-06)]_\ 1 chrVIII:105033-105437 8.57e-01 100 chrIX:370209-370613 2.63e-02 55_[+1(2.63e-05)]_25 chrXVI:75732-76136 8.50e-01 100 chrXI:458503-458692 2.95e-07 9_[+1(3.98e-07)]_1_[+3(3.28e-07)]_\ 55 chrXV:80766-81170 5.02e-01 100 chrVIII:432076-432480 5.63e-01 100 chrV:322403-322807 9.98e-01 100 chrXIV:301592-301996 7.70e-02 100 chrV:363575-363979 9.64e-01 100 chrVII:311109-311312 9.34e-01 100 chrXVI:110067-110471 3.01e-01 100 chrIV:491584-491988 8.84e-02 100 chrVI:137400-137631 3.47e-13 29_[-2(1.13e-09)]_2_[-3(2.27e-07)]_\ 1_[-1(5.02e-07)]_6 chrXV:1073408-1073812 7.12e-01 100 chrXIII:297747-298312 9.34e-01 100 chrXVI:700407-700811 6.98e-01 100 chrXIV:303344-303462 3.84e-01 100 chrV:443159-443331 2.63e-13 15_[-2(6.40e-12)]_18_[-1(2.94e-09)]_\ 20 chrII:227049-227151 3.45e-08 24_[+1(1.86e-08)]_[+3(1.33e-06)]_41 chrXV:678267-678671 6.24e-01 100 chrXIII:297130-297775 9.97e-01 100 chrXIV:500328-500778 8.42e-01 100 chrII:606479-606883 5.07e-01 100 chrVII:405344-405748 4.28e-08 9_[+2(1.96e-12)]_64 chrII:405890-406294 1.16e-01 100 chrXII:232222-232479 9.88e-01 100 chrXIII:290682-290916 3.85e-02 51_[+1(2.63e-05)]_29 chrXII:201947-202102 2.57e-01 100 chrIX:255981-256385 9.92e-01 100 chrIV:555638-555795 9.86e-01 100 chrXII:263280-263684 5.01e-01 100 chrVIII:145938-146342 9.95e-01 100 chrX:608732-608832 5.77e-01 100 chrVII:784907-785311 9.70e-01 100 chrXIII:572827-573070 5.85e-06 22_[-3(1.43e-06)]_[-1(4.56e-06)]_43 chrX:420829-420929 1.81e-01 100 chrVII:845512-845802 2.67e-04 41_[+1(1.91e-07)]_39 chrX:233846-233946 1.65e-03 62_[+1(6.29e-07)]_18 chrXI:520540-520944 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chrXVI:303804-304208 8.07e-01 100 chrXVI:294445-294849 6.16e-02 52_[-1(5.93e-05)]_28 chrI:151454-151672 9.20e-01 100 chrXII:605260-605523 5.47e-06 71_[-1(1.33e-08)]_9 chrIV:117828-118232 9.70e-01 100 chrXIII:888661-888828 4.03e-01 100 chrXV:877762-878049 6.62e-01 100 chrIV:1239749-1240153 9.29e-01 100 chrXIII:586641-586747 5.02e-11 [-2(7.75e-10)]_18_[-1(1.11e-08)]_35 chrXII:793783-794014 2.12e-02 69_[+1(9.77e-06)]_11 chrXVI:733146-733550 9.92e-01 100 chrVII:878632-878941 3.93e-03 59_[-1(4.56e-06)]_21 chrII:255176-255309 8.09e-01 100 chrIX:300158-300427 9.12e-09 23_[-3(2.27e-07)]_[-1(1.86e-08)]_42 chrXII:656963-657065 6.67e-06 22_[-1(2.40e-09)]_58 chrVII:700573-700837 4.38e-06 19_[+1(3.18e-06)]_26_[+2(6.61e-06)]_\ 8 chrII:611990-612394 8.77e-01 100 chrX:538479-538579 6.08e-12 16_[+1(4.47e-07)]_16_[+2(1.66e-11)]_\ 21 chrXII:86821-87225 1.85e-01 100 chrXII:126064-126468 5.32e-01 100 chrVI:64169-64573 5.39e-01 100 chrXIV:577074-577478 2.36e-02 100 chrXI:578863-579152 5.97e-12 7_[+1(6.29e-07)]_40_[+2(9.24e-12)]_\ 6 chrXVI:730930-731334 6.06e-01 100 chrXV:621030-621233 7.79e-01 100 chrXIV:392359-392736 8.03e-01 100 chrI:141587-141975 5.28e-01 100 chrXVI:56141-56326 1.37e-04 71_[-1(4.56e-06)]_9 chrXVI:555992-556136 8.54e-01 100 chrXII:167887-168142 1.57e-07 26_[-3(1.33e-06)]_[-1(1.86e-08)]_39 chrIX:389443-389847 9.78e-01 100 chrV:86056-86162 1.78e-01 100 chrI:166179-166391 4.12e-13 31_[+1(1.58e-08)]_17_[+2(1.48e-11)]_\ 5 chrXII:729269-729673 6.76e-02 100 chrXVI:810622-810730 1.30e-07 49_[+1(5.02e-07)]_1_[+3(2.27e-07)]_\ 15 chrVIII:134326-134730 6.50e-01 100 chrXV:93768-93940 4.26e-01 100 chrXVI:352368-352535 3.35e-01 100 chrXI:202325-202729 8.07e-01 100 chrXV:900243-900647 5.72e-01 100 chrVIII:147762-147959 8.20e-01 100 chrVII:723178-723582 9.77e-01 100 chrVIII:475653-475848 1.25e-08 14_[-2(4.09e-10)]_17_[-1(1.24e-05)]_\ 22 chrXVI:435840-436093 4.62e-06 28_[-1(9.32e-09)]_52 chrXV:710095-710273 6.36e-04 66_[+1(1.33e-06)]_14 chrXVI:210195-210388 3.83e-03 2_[-1(2.63e-05)]_78 chrXII:820043-820447 8.07e-01 100 chrIV:556050-556454 6.18e-01 100 chrXIII:618966-619370 2.93e-01 100 chrIX:316878-317282 4.00e-01 100 chrXVI:433150-433554 2.18e-01 100 chrVII:823374-823615 3.09e-05 37_[+1(1.11e-08)]_43 chrIV:308405-308809 5.68e-01 100 chrVI:121211-121615 5.39e-01 100 chrV:364217-364476 9.99e-01 100 chrIV:992724-992941 2.67e-04 49_[+1(1.91e-07)]_31 chrII:197284-197688 4.48e-05 57_[+1(2.94e-09)]_23 chrII:350707-350915 1.95e-03 65_[+1(2.46e-07)]_15 chrIII:149794-150030 4.14e-04 57_[+1(1.33e-06)]_23 chrVII:534816-535220 1.24e-01 100 chrXV:759196-759324 7.43e-01 100 chrXII:637448-637653 9.66e-03 11_[+1(7.18e-05)]_69 chrIII:101996-102400 7.90e-02 100 chrXVI:718420-718824 8.94e-01 100 chrXII:369270-369824 9.69e-01 100 chrIV:1017134-1017372 2.23e-09 12_[-2(2.32e-11)]_16_[-1(1.34e-05)]_\ 25 chrXV:976270-976674 2.97e-09 18_[+3(1.43e-06)]_2_[+2(3.18e-10)]_\ 38 chrXV:622687-623091 7.44e-02 100 chrV:431221-431462 2.72e-03 55_[-1(1.62e-06)]_25 chrV:460582-460986 1.23e-01 100 chrXVI:303659-303768 3.09e-01 100 chrX:424415-424515 7.64e-05 9_[-1(3.14e-07)]_71 chrII:169369-169773 7.93e-01 100 chrXV:28808-29212 7.25e-01 100 chrVII:930959-931127 2.67e-04 10_[-1(1.91e-07)]_70 chrXIV:216761-217165 8.92e-01 100 chrII:681405-681769 6.19e-01 100 chrVII:556652-557056 8.41e-02 100 chrVII:731025-731257 3.80e-07 45_[+1(5.02e-07)]_1_[+3(2.27e-07)]_\ 19 chrXII:797073-797316 2.47e-09 33_[+1(2.63e-05)]_16_[+2(2.32e-11)]_\ 4 chrXV:92055-92459 5.70e-01 100 chrX:652311-652411 4.17e-01 100 chrX:378229-378329 3.25e-05 80_[+1(1.11e-08)] chrIV:465207-465538 1.82e-01 100 chrII:680316-680720 6.26e-01 100 chrXIV:575326-575663 8.94e-01 100 chrIV:322920-323118 9.69e-01 100 chrVII:727111-727515 5.56e-01 100 chrIV:655632-656036 5.04e-01 100 chrVII:115381-115661 2.02e-04 16_[+1(6.29e-07)]_64 chrIX:316294-316453 4.18e-01 100 chrXI:364726-365130 3.30e-01 100 chrV:435697-435911 4.53e-18 6_[-2(2.26e-13)]_2_[-3(2.27e-07)]_\ [-1(1.86e-08)]_30 chrVII:736190-736458 3.97e-07 65_[+1(5.57e-08)]_15 chrIII:295428-295548 2.82e-07 45_[+1(1.48e-07)]_[+3(4.15e-07)]_20 chrXIII:652339-652601 6.10e-01 100 chrXII:855907-856311 9.39e-01 100 chrXIV:215649-216053 3.07e-01 100 chrXVI:201826-202230 6.52e-01 100 chrXII:232464-232828 4.77e-01 100 chrIII:127593-127858 5.22e-07 40_[+1(5.02e-07)]_1_[+3(2.27e-07)]_\ 24 chrXVI:795536-795940 8.19e-02 31_[+1(2.82e-05)]_49 chrII:77341-77745 6.47e-01 100 chrIV:1095372-1095565 2.06e-06 8_[-3(1.60e-07)]_[-1(3.18e-06)]_57 chrIV:1324405-1324809 5.54e-01 100 chrXIV:716218-716491 9.94e-01 100 chrIX:226449-226853 6.80e-01 100 chrXII:975921-976092 3.47e-13 35_[-2(1.13e-09)]_2_[-3(2.27e-07)]_\ 1_[-1(5.02e-07)] chrXV:60220-60624 5.97e-01 100 chrII:654437-654841 3.01e-01 100 chrXIII:163312-163427 9.96e-01 100 chrV:176992-177205 5.02e-02 50_[+1(2.63e-05)]_30 chrIV:1166767-1167171 9.97e-01 100 chrVIII:127009-127413 5.91e-02 100 chrIII:227818-228087 9.29e-10 39_[+1(2.20e-08)]_[+3(1.23e-07)]_26 chrIV:405347-405751 2.61e-01 100 chrV:396898-397302 4.40e-01 100 chrXI:379616-379757 2.71e-05 43_[+1(1.11e-08)]_37 chrIV:129969-130373 7.92e-01 100 chrXII:794211-794615 7.04e-01 100 chrXII:930651-931055 3.75e-01 100 chrII:413940-414344 8.60e-01 100 chrXVI:560070-560379 1.52e-09 32_[-2(1.22e-09)]_21_[-3(1.60e-07)]_\ 5 chrV:409876-410280 8.23e-01 100 chrII:645040-645293 1.93e-02 50_[+1(2.63e-05)]_30 chrII:144929-145333 9.31e-02 100 chrX:531868-531968 8.48e-01 100 chrVIII:35618-36022 4.91e-01 100 chrXIII:19017-19421 2.83e-01 100 chrIV:802536-802940 2.31e-06 51_[-2(9.81e-11)]_22 chrIV:519540-519944 2.03e-08 50_[+1(3.14e-07)]_1_[+3(2.90e-07)]_\ 14 chrXII:805932-806336 2.86e-01 100 chrXIII:362963-363195 5.29e-05 34_[+1(2.40e-06)]_16_[+2(1.47e-05)]_\ 3 chrI:70441-70845 5.25e-02 100 chrXI:517885-518096 1.13e-05 47_[+1(2.40e-09)]_33 chrV:423887-424291 3.92e-01 100 chrXI:308144-308312 6.52e-05 19_[-1(1.11e-08)]_61 chrVI:220258-220662 8.96e-01 100 chrXII:523090-523494 2.51e-01 100 chrIII:162801-163205 6.74e-01 100 chrVIII:451693-451843 6.02e-02 64_[-2(5.16e-05)]_9 chrXI:552126-552530 5.98e-01 100 chrXIII:892945-893349 7.45e-01 100 chrII:326776-326977 9.06e-06 19_[-1(2.59e-08)]_61 chrIII:177308-177515 9.45e-01 100 chrVII:544530-544782 1.87e-02 22_[-1(9.77e-06)]_58 chrX:91209-91309 6.58e-01 100 chrIII:107409-107512 9.07e-01 100 chrIV:1355040-1355444 4.65e-01 100 chrIV:230250-230654 3.36e-01 100 chrVIII:147933-148337 8.11e-01 100 chrXII:842463-842867 4.26e-01 100 chrIV:45695-46099 6.38e-01 100 chrXVI:701872-702120 6.59e-01 100 chrII:680515-680919 3.54e-01 100 chrVIII:62657-62912 1.33e-05 20_[+1(2.40e-06)]_16_[+2(1.47e-05)]_\ 17 chrXIV:507408-507524 9.99e-01 100 chrX:663870-663970 7.67e-01 100 chrVII:479374-479576 2.97e-01 100 chrXV:900033-900437 3.39e-01 100 chrII:478956-479210 9.96e-01 100 chrIV:1461460-1461864 2.04e-01 100 chrV:67267-67671 4.37e-01 100 chrVII:774248-774500 2.78e-12 24_[+1(2.40e-09)]_17_[+2(4.09e-10)]_\ 12 chrI:139041-139278 1.15e-05 42_[+1(1.11e-08)]_38 chrXV:897677-898081 9.48e-01 100 chrVII:541731-542021 2.47e-09 23_[+1(2.63e-05)]_16_[+2(2.32e-11)]_\ 14 chrXIV:626079-626483 2.73e-01 100 chrVII:364166-364570 1.06e-01 100 chrIV:1466595-1466999 3.39e-01 100 chrV:322193-322597 8.59e-01 100 chrXIII:83926-84330 9.26e-01 100 chrXIV:62386-62790 8.86e-01 100 chrVII:148141-148244 9.27e-01 100 chrXV:254554-254958 9.40e-01 100 chrXIII:747890-748008 5.56e-15 1_[-2(1.96e-12)]_16_[-1(5.57e-08)]_\ 36 chrXV:274572-274782 4.27e-05 45_[+1(1.86e-08)]_35 chrXVI:572152-572351 5.13e-04 67_[+1(1.91e-07)]_13 chrXII:459536-460174 5.01e-01 100 chrXIII:259116-259332 1.57e-07 30_[-3(1.33e-06)]_[-1(1.86e-08)]_35 chrII:9389-9793 2.03e-08 41_[+1(3.14e-07)]_1_[+3(2.90e-07)]_\ 23 chrII:88930-89334 7.83e-01 100 chrXI:100340-100744 7.62e-01 100 chrXVI:377819-378223 7.92e-01 100 chrIV:1270032-1270436 1.74e-01 100 chrXVI:407394-407798 9.32e-01 100 chrXIII:222598-223002 7.61e-01 100 chrX:355300-355400 9.15e-11 5_[+2(1.96e-12)]_19_[+1(9.77e-06)]_\ 29 chrXV:780332-780870 4.45e-01 100 chrXV:438494-438789 2.02e-04 51_[+1(6.29e-07)]_29 chrXII:156920-157324 9.43e-01 100 chrIV:1150744-1151074 1.44e-04 62_[-1(1.86e-08)]_18 chrXII:199379-199480 3.77e-01 100 chrX:115883-115983 1.51e-02 34_[-1(2.63e-05)]_46 chrVII:882867-883029 3.45e-01 100 chrXV:620406-620647 7.37e-02 63_[+1(2.82e-05)]_17 chrXIV:283146-283550 6.09e-01 100 chrV:288396-288616 2.78e-08 33_[-3(1.60e-07)]_[-1(2.20e-08)]_32 chrVIII:132974-133229 1.95e-08 21_[-3(1.33e-06)]_[-1(1.86e-08)]_44 chrVII:787594-787998 2.88e-01 100 chrVIII:127542-127946 5.05e-01 100 chrXI:617658-618062 6.75e-01 100 chrVII:798769-799173 8.07e-01 100 chrXIII:550621-551025 8.23e-01 100 chrXII:198544-198948 1.55e-01 100 chrXIII:372420-372597 2.67e-05 40_[-1(1.11e-08)]_40 chrXIV:63993-64397 9.33e-01 100 chrVI:210597-210833 4.65e-07 5_[-3(1.32e-08)]_2_[-1(7.64e-06)]_\ 58 chrX:228001-228101 1.87e-01 100 chrII:802658-803062 5.05e-01 100 chrXIII:91877-92033 1.33e-01 100 chrXII:47700-47836 3.18e-01 100 chrXII:573149-573553 1.15e-01 100 chrXII:712648-712806 7.98e-01 100 chrV:397454-397858 3.16e-01 100 chrXIII:480554-480817 9.12e-09 23_[-3(2.27e-07)]_[-1(1.86e-08)]_42 chrVI:220952-221356 7.67e-02 100 chrIX:98230-98634 3.46e-01 100 chrII:421136-421540 1.01e-01 100 chrV:225459-225638 5.08e-01 100 chrX:121873-121973 7.23e-01 100 chrXVI:654797-654950 9.99e-01 100 chrVII:602639-603043 8.94e-01 100 chrXI:431961-432365 7.37e-01 100 chrXIII:891312-891716 6.64e-01 100 chrXII:449749-450153 1.13e-01 100 chrVI:226641-226830 4.53e-18 11_[-2(2.26e-13)]_2_[-3(2.27e-07)]_\ [-1(1.86e-08)]_25 chrIV:309645-310049 8.20e-01 100 chrIX:255819-255947 1.19e-01 100 chrVII:545287-545691 1.08e-01 100 chrXVI:842944-843166 5.55e-01 100 chrIII:123517-123746 1.79e-13 4_[-2(5.12e-14)]_16_[-1(1.62e-06)]_\ 33 chrXV:663719-664002 5.02e-11 10_[-2(7.75e-10)]_18_[-1(1.11e-08)]_\ 25 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************