******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--THP2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXV:619776-621475 1.0000 100 chrVII:148131-148761 1.0000 100 chrIV:564136-564766 1.0000 100 chrXI:283609-284845 1.0000 100 chrXII:910486-911116 1.0000 100 chrVII:479172-482821 1.0000 100 chrXIII:161919-162847 1.0000 100 chrXII:810124-815937 1.0000 100 chrV:397243-397873 1.0000 100 chrXIII:887073-889200 1.0000 100 chrIV:884171-884586 1.0000 100 chrVII:736111-736551 1.0000 100 chrXVI:435737-436169 1.0000 100 chrX:652099-652199 1.0000 100 chrIV:488502-489063 1.0000 100 chrV:423861-424491 1.0000 100 chrI:71854-73586 1.0000 100 chrXV:890023-890653 1.0000 100 chrXII:374139-374644 1.0000 100 chrII:605729-606097 1.0000 100 chrXVI:701691-702344 1.0000 100 chrXV:31166-32807 1.0000 100 chrV:223271-224530 1.0000 100 chrXV:622388-623521 1.0000 100 chrX:442448-442548 1.0000 100 chrXII:538502-539132 1.0000 100 chrVII:439192-439822 1.0000 100 chrXII:132743-133108 1.0000 100 chrXII:65474-65673 1.0000 100 chrXIV:88985-89613 1.0000 100 chrXI:100820-106999 1.0000 100 chrVII:661543-661947 1.0000 100 chrIX:389157-391063 1.0000 100 chrXV:723304-725202 1.0000 100 chrXII:440691-441560 1.0000 100 chrXIV:181467-182097 1.0000 100 chrIV:1402504-1403134 1.0000 100 chrVIII:126920-127102 1.0000 100 chrVII:641254-641466 1.0000 100 chrXII:263571-263867 1.0000 100 chrXVI:109148-114534 1.0000 100 chrXVI:376806-377436 1.0000 100 chrII:231400-232030 1.0000 100 chrII:394204-397478 1.0000 100 chrVI:64149-64502 1.0000 100 chrX:123734-123834 1.0000 100 chrXII:819797-820427 1.0000 100 chrXV:780004-780899 1.0000 100 chrXVI:532925-533555 1.0000 100 chrXIII:119894-120524 1.0000 100 chrXVI:404972-405806 1.0000 100 chrVII:609671-609867 1.0000 100 chrXIII:753461-754091 1.0000 100 chrV:438523-438883 1.0000 100 chrXV:438438-438924 1.0000 100 chrIX:23812-25371 1.0000 100 chrIV:382005-382348 1.0000 100 chrII:89029-89659 1.0000 100 chrIV:130123-130753 1.0000 100 chrXIV:654493-655781 1.0000 100 chrVII:555334-555678 1.0000 100 chrIV:221958-222305 1.0000 100 chrXIII:511470-511976 1.0000 100 chrXIII:499567-500421 1.0000 100 chrXIV:455330-455960 1.0000 100 chrXIII:116055-116883 1.0000 100 chrXII:232017-234136 1.0000 100 chrXIII:754832-755111 1.0000 100 chrXIII:550670-550886 1.0000 100 chrII:81322-81493 1.0000 100 chrXII:283030-283929 1.0000 100 chrVII:185580-185940 1.0000 100 chrIV:492181-492591 1.0000 100 chrXI:259162-259913 1.0000 100 chrVIII:34455-35972 1.0000 100 chrIII:57218-58278 1.0000 100 chrIV:466111-470778 1.0000 100 chrXVI:406168-406530 1.0000 100 chrVII:1020462-1020755 1.0000 100 chrXV:867279-867909 1.0000 100 chrIX:317740-318035 1.0000 100 chrXIII:865974-866604 1.0000 100 chrXV:1006197-1006827 1.0000 100 chrI:78335-79448 1.0000 100 chrII:612053-612624 1.0000 100 chrXV:113643-113971 1.0000 100 chrIII:191204-191834 1.0000 100 chrXII:951401-953549 1.0000 100 chrXIII:728450-728931 1.0000 100 chrIX:25831-26644 1.0000 100 chrXIV:657082-660945 1.0000 100 chrXII:570472-570812 1.0000 100 chrX:120924-121024 1.0000 100 chrIV:946230-946585 1.0000 100 chrVII:857293-857662 1.0000 100 chrXVI:745589-746219 1.0000 100 chrV:52249-52907 1.0000 100 chrXIII:507317-507682 1.0000 100 chrVII:899831-900039 1.0000 100 chrXIV:24714-27472 1.0000 100 chrII:82189-82679 1.0000 100 chrXV:605164-605794 1.0000 100 chrXII:930646-931160 1.0000 100 chrVII:1048212-1049862 1.0000 100 chrXIV:241409-241729 1.0000 100 chrVIII:119780-121269 1.0000 100 chrXI:326101-327453 1.0000 100 chrXII:898316-898946 1.0000 100 chrXII:366073-366449 1.0000 100 chrV:469258-469642 1.0000 100 chrXI:330739-331369 1.0000 100 chrXIII:288493-289979 1.0000 100 chrIV:479124-479754 1.0000 100 chrXII:402157-402667 1.0000 100 chrXV:505123-505487 1.0000 100 chrVII:344141-344990 1.0000 100 chrXIV:185820-186450 1.0000 100 chrVII:825157-825568 1.0000 100 chrVIII:125920-126314 1.0000 100 chrIII:137868-139143 1.0000 100 chrVIII:160243-160873 1.0000 100 chrVII:738905-739307 1.0000 100 chrXII:254115-255177 1.0000 100 chrXVI:769077-769519 1.0000 100 chrIX:255286-256084 1.0000 100 chrXVI:398715-399011 1.0000 100 chrV:61332-62148 1.0000 100 chrXVI:875535-876165 1.0000 100 chrVII:779435-779815 1.0000 100 chrVII:439571-439852 1.0000 100 chrVII:826460-826864 1.0000 100 chrX:349048-349148 1.0000 100 chrVII:600897-601332 1.0000 100 chrVII:545555-545716 1.0000 100 chrV:396213-396573 1.0000 100 chrII:88102-88680 1.0000 100 chrX:76038-76138 1.0000 100 chrIX:69310-69644 1.0000 100 chrIX:69282-69601 1.0000 100 chrX:702023-702123 1.0000 100 chrXVI:649672-649941 1.0000 100 chrXIV:505561-506388 1.0000 100 chrVII:882595-883146 1.0000 100 chrV:441792-442582 1.0000 100 chrXII:729297-730181 1.0000 100 chrXIV:174225-174556 1.0000 100 chrXV:900083-900713 1.0000 100 chrXIV:413876-415135 1.0000 100 chrXIV:416739-417013 1.0000 100 chrXIII:878801-879808 1.0000 100 chrXI:334071-334818 1.0000 100 chrXIII:372333-372686 1.0000 100 chrII:59833-60463 1.0000 100 chrXII:636851-640278 1.0000 100 chrIV:427523-428736 1.0000 100 chrVI:64616-64844 1.0000 100 chrXI:616602-617009 1.0000 100 chrXV:93419-93800 1.0000 100 chrIX:157062-157692 1.0000 100 chrXV:678882-679160 1.0000 100 chrXV:651029-651305 1.0000 100 chrXV:866569-866952 1.0000 100 chrXIII:554546-555841 1.0000 100 chrXII:499012-499741 1.0000 100 chrIX:192039-192669 1.0000 100 chrIV:809356-810381 1.0000 100 chrXIII:300621-302065 1.0000 100 chrXVI:280749-281376 1.0000 100 chrIV:355188-356710 1.0000 100 chrIV:1162673-1164275 1.0000 100 chrXIV:62138-62768 1.0000 100 chrII:232768-232986 1.0000 100 chrVII:876201-876974 1.0000 100 chrXV:1028702-1029124 1.0000 100 chrXV:623897-624239 1.0000 100 chrXII:975822-976168 1.0000 100 chrXVI:151260-151890 1.0000 100 chrI:81971-82208 1.0000 100 chrXIV:443531-444161 1.0000 100 chrXIV:331681-331878 1.0000 100 chrXI:618823-619196 1.0000 100 chrVIII:451363-453061 1.0000 100 chrXV:281951-282368 1.0000 100 chrXII:932155-932492 1.0000 100 chrII:680385-681835 1.0000 100 chrX:390935-391035 1.0000 100 chrIX:116493-117123 1.0000 100 chrXIII:362892-363254 1.0000 100 chrXII:922114-922561 1.0000 100 chrV:135298-135654 1.0000 100 chrXI:336834-337204 1.0000 100 chrIV:45352-46131 1.0000 100 chrXVI:749183-749412 1.0000 100 chrXIV:302858-303722 1.0000 100 chrXII:730026-730362 1.0000 100 chrV:282201-283510 1.0000 100 chrXVI:753649-754279 1.0000 100 chrXV:274483-274876 1.0000 100 chrIV:1090022-1090652 1.0000 100 chrXII:327743-327943 1.0000 100 chrII:420319-420499 1.0000 100 chrXII:1018995-1019336 1.0000 100 chrII:162724-163428 1.0000 100 chrXV:503057-503687 1.0000 100 chrVI:162023-162400 1.0000 100 chrXV:506178-506808 1.0000 100 chrXI:490778-491143 1.0000 100 chrXIV:508506-509136 1.0000 100 chrVII:930868-931225 1.0000 100 chrX:90075-90175 1.0000 100 chrXVI:173331-173876 1.0000 100 chrIV:1466568-1467917 1.0000 100 chrV:78187-79717 1.0000 100 chrXIII:222541-222830 1.0000 100 chrV:51933-52396 1.0000 100 chrXII:579187-579817 1.0000 100 chrIV:1175640-1176039 1.0000 100 chrXII:1031407-1032037 1.0000 100 chrVII:878606-878993 1.0000 100 chrXIII:699730-700360 1.0000 100 chrVII:24410-25822 1.0000 100 chrVII:726451-726752 1.0000 100 chrV:67065-68646 1.0000 100 chrXIV:307397-308027 1.0000 100 chrXIII:892876-893667 1.0000 100 chrXIII:159396-160026 1.0000 100 chrXII:459448-459978 1.0000 100 chrVII:847501-847934 1.0000 100 chrXV:253074-253391 1.0000 100 chrVII:310496-310895 1.0000 100 chrXIII:368593-368941 1.0000 100 chrVII:648971-649542 1.0000 100 chrX:75358-75458 1.0000 100 chrV:308136-308766 1.0000 100 chrVII:870167-870797 1.0000 100 chrXIII:702476-703532 1.0000 100 chrXII:579387-580017 1.0000 100 chrXV:28816-29210 1.0000 100 chrVII:143134-143764 1.0000 100 chrXIII:225365-225734 1.0000 100 chrXIV:172401-173031 1.0000 100 chrXV:287966-288381 1.0000 100 chrXIII:251693-252352 1.0000 100 chrXVI:139527-140157 1.0000 100 chrIV:1324307-1324937 1.0000 100 chrXVI:432724-434360 1.0000 100 chrXIV:402461-402642 1.0000 100 chrXV:778542-779172 1.0000 100 chrIV:527073-527460 1.0000 100 chrXVI:303226-304368 1.0000 100 chrXII:547109-547673 1.0000 100 chrVIII:145960-146317 1.0000 100 chrXVI:868660-868892 1.0000 100 chrVII:610943-611761 1.0000 100 chrIV:472568-473031 1.0000 100 chrII:478785-479384 1.0000 100 chrIV:929493-930123 1.0000 100 chrXIV:63133-63533 1.0000 100 chrXVI:810521-810836 1.0000 100 chrVII:805100-805316 1.0000 100 chrXVI:298269-298512 1.0000 100 chrIV:1329357-1329595 1.0000 100 chrXIV:102534-102911 1.0000 100 chrXI:109493-110052 1.0000 100 chrXIII:732048-732374 1.0000 100 chrXV:812233-812863 1.0000 100 chrVII:366109-366520 1.0000 100 chrII:397449-397924 1.0000 100 chrXII:545199-545417 1.0000 100 chrXII:258063-258624 1.0000 100 chrXV:159224-160310 1.0000 100 chrXIV:499844-500797 1.0000 100 chrII:256511-256999 1.0000 100 chrII:46070-46473 1.0000 100 chrXV:833282-833912 1.0000 100 chrXVI:65138-65336 1.0000 100 chrII:557267-557808 1.0000 100 chrIV:1489040-1489856 1.0000 100 chrXVI:819324-819874 1.0000 100 chrXII:1028253-1028560 1.0000 100 chrXV:896638-897536 1.0000 100 chrXII:837647-839125 1.0000 100 chrXVI:249712-250342 1.0000 100 chrXV:87770-88118 1.0000 100 chrXV:900374-901004 1.0000 100 chrXV:1027863-1028617 1.0000 100 chrIV:915546-916332 1.0000 100 chrXIII:126718-127348 1.0000 100 chrIV:117866-118318 1.0000 100 chrVII:254178-254546 1.0000 100 chrIV:118356-118725 1.0000 100 chrX:61176-61276 1.0000 100 chrXIII:626502-626953 1.0000 100 chrIV:1204632-1205262 1.0000 100 chrXI:162330-162730 1.0000 100 chrXVI:819324-819882 1.0000 100 chrXII:523230-523396 1.0000 100 chrVII:787641-787800 1.0000 100 chrXII:628192-628656 1.0000 100 chrIV:437572-437958 1.0000 100 chrVI:65003-65317 1.0000 100 chrVIII:115974-116394 1.0000 100 chrXVI:689375-689776 1.0000 100 chrII:193244-193402 1.0000 100 chrXV:29139-30983 1.0000 100 chrXV:185744-186374 1.0000 100 chrIX:316123-316597 1.0000 100 chrXI:488457-488732 1.0000 100 chrIV:201176-201806 1.0000 100 chrVI:221768-222063 1.0000 100 chrX:519493-519593 1.0000 100 chrIV:802624-802912 1.0000 100 chrVIII:493320-493559 1.0000 100 chrII:45010-45335 1.0000 100 chrXII:794184-795126 1.0000 100 chrXII:791282-791912 1.0000 100 chrXIII:293078-293287 1.0000 100 chrX:451526-451626 1.0000 100 chrXII:448526-448897 1.0000 100 chrIV:568699-569133 1.0000 100 chrXI:379497-379867 1.0000 100 chrX:197160-197260 1.0000 100 chrIV:308026-308364 1.0000 100 chrXI:519641-521044 1.0000 100 chrXVI:718535-719077 1.0000 100 chrVII:866213-866546 1.0000 100 chrIII:230638-230913 1.0000 100 chrV:31660-32290 1.0000 100 chrXVI:192139-192769 1.0000 100 chrX:422743-422843 1.0000 100 chrV:306672-306918 1.0000 100 chrVIII:237680-238128 1.0000 100 chrVIII:148061-148292 1.0000 100 chrII:410140-410770 1.0000 100 chrIV:434151-434488 1.0000 100 chrXIV:282813-283529 1.0000 100 chrIV:1441869-1442233 1.0000 100 chrIX:128590-129156 1.0000 100 chrVIII:388785-389206 1.0000 100 chrV:81357-81987 1.0000 100 chrXII:328037-328253 1.0000 100 chrV:85669-86804 1.0000 100 chrVII:862376-863006 1.0000 100 chrXV:411674-412304 1.0000 100 chrIV:306554-307184 1.0000 100 chrII:409939-410569 1.0000 100 chrVII:251750-251985 1.0000 100 chrXII:1038996-1039468 1.0000 100 chrIV:1075355-1075727 1.0000 100 chrXII:899319-899636 1.0000 100 chrIV:1060502-1060882 1.0000 100 chrVIII:444754-445384 1.0000 100 chrXII:818428-818809 1.0000 100 chrVII:823302-823690 1.0000 100 chrII:713418-713604 1.0000 100 chrXI:141420-142383 1.0000 100 chrVII:1050810-1051440 1.0000 100 chrII:89630-89957 1.0000 100 chrXVI:377131-377421 1.0000 100 chrIV:1078545-1079175 1.0000 100 chrXIII:754443-754790 1.0000 100 chrVIII:492804-493434 1.0000 100 chrXIV:626192-626822 1.0000 100 chrIV:1236586-1238451 1.0000 100 chrXIII:761550-762285 1.0000 100 chrII:197312-197689 1.0000 100 chrXIV:403423-403737 1.0000 100 chrIV:768256-768886 1.0000 100 chrXIV:705520-705775 1.0000 100 chrVII:364260-364543 1.0000 100 chrXV:729330-729815 1.0000 100 chrXII:545250-545880 1.0000 100 chrXII:919535-919776 1.0000 100 chrXII:350021-350457 1.0000 100 chrXV:594206-594621 1.0000 100 chrV:299202-301955 1.0000 100 chrVII:724556-725186 1.0000 100 chrXVI:193679-194599 1.0000 100 chrIV:384434-385064 1.0000 100 chrVII:700433-701242 1.0000 100 chrXII:280893-281523 1.0000 100 chrXV:444745-446183 1.0000 100 chrX:204566-204666 1.0000 100 chrIV:491710-492340 1.0000 100 chrXVI:520164-520522 1.0000 100 chrV:74915-75545 1.0000 100 chrXVI:692852-693482 1.0000 100 chrXIV:65875-66505 1.0000 100 chrXVI:642534-643531 1.0000 100 chrXV:797962-798756 1.0000 100 chrXIII:747756-748170 1.0000 100 chrVII:311074-312227 1.0000 100 chrV:397026-397292 1.0000 100 chrVII:727613-727922 1.0000 100 chrX:139153-139253 1.0000 100 chrIV:1241322-1241952 1.0000 100 chrXIII:551371-551795 1.0000 100 chrVII:645057-645687 1.0000 100 chrXIV:174007-174308 1.0000 100 chrVII:277767-278779 1.0000 100 chrIII:191493-192123 1.0000 100 chrIX:214284-214609 1.0000 100 chrIV:579587-580394 1.0000 100 chrV:93117-93747 1.0000 100 chrVIII:381691-382072 1.0000 100 chrIV:189206-189836 1.0000 100 chrX:648039-648139 1.0000 100 chrXIV:398608-399238 1.0000 100 chrVI:222989-223619 1.0000 100 chrVII:281905-282091 1.0000 100 chrXIV:229933-230563 1.0000 100 chrIII:168177-168600 1.0000 100 chrIV:1302024-1302459 1.0000 100 chrVII:799136-799727 1.0000 100 chrX:354090-354190 1.0000 100 chrXVI:312204-312834 1.0000 100 chrXVI:860160-860567 1.0000 100 chrII:374314-374765 1.0000 100 chrVII:751440-752070 1.0000 100 chrIV:116629-117145 1.0000 100 chrXV:589359-589989 1.0000 100 chrII:9455-9748 1.0000 100 chrXII:1015276-1015906 1.0000 100 chrXII:570132-570547 1.0000 100 chrXIV:662957-663587 1.0000 100 chrXIII:504685-505063 1.0000 100 chrVII:648087-648534 1.0000 100 chrV:138438-140126 1.0000 100 chrII:605245-605721 1.0000 100 chrIV:561190-561820 1.0000 100 chrXIII:220252-220882 1.0000 100 chrVII:556811-557108 1.0000 100 chrIX:99655-99989 1.0000 100 chrV:434224-434854 1.0000 100 chrX:382056-382156 1.0000 100 chrXII:201672-202457 1.0000 100 chrXIII:808123-808517 1.0000 100 chrXV:80605-80884 1.0000 100 chrIV:177187-177817 1.0000 100 chrXVI:282445-282739 1.0000 100 chrXIII:552156-552786 1.0000 100 chrV:475864-476494 1.0000 100 chrV:329619-330249 1.0000 100 chrII:266211-266651 1.0000 100 chrVII:806092-807053 1.0000 100 chrX:517741-517841 1.0000 100 chrXII:241651-242009 1.0000 100 chrXV:612760-613390 1.0000 100 chrII:234840-235647 1.0000 100 chrVII:468215-468845 1.0000 100 chrIV:392409-393039 1.0000 100 chrVII:600129-600997 1.0000 100 chrXIV:502134-502764 1.0000 100 chrVII:541641-542099 1.0000 100 chrXII:962857-963233 1.0000 100 chrII:413815-414428 1.0000 100 chrV:545798-546428 1.0000 100 chrXIII:290610-290974 1.0000 100 chrIV:601068-602302 1.0000 100 chrVII:122109-122483 1.0000 100 chrV:435650-435977 1.0000 100 chrIV:1150703-1151142 1.0000 100 chrIV:655975-656574 1.0000 100 chrXIV:252193-252823 1.0000 100 chrVIII:382922-383316 1.0000 100 chrXV:650070-650261 1.0000 100 chrXII:855954-856638 1.0000 100 chrXVI:188675-188881 1.0000 100 chrXIV:108309-108939 1.0000 100 chrIV:117166-117576 1.0000 100 chrXVI:352840-353470 1.0000 100 chrVII:438610-438890 1.0000 100 chrV:487208-487552 1.0000 100 chrVII:534800-535230 1.0000 100 chrIV:1352324-1352710 1.0000 100 chrII:405659-406120 1.0000 100 chrXII:734632-735003 1.0000 100 chrXIII:146691-147304 1.0000 100 chrIII:90702-91071 1.0000 100 chrXI:112981-113826 1.0000 100 chrIV:1305441-1305816 1.0000 100 chrXVI:649535-649743 1.0000 100 chrXIV:215815-216125 1.0000 100 chrIV:490497-491127 1.0000 100 chrIV:720573-721522 1.0000 100 chrVII:648971-649432 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--THP2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--THP2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--THP2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 486 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 48600 N= 486 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.305 C 0.195 G 0.195 T 0.305 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--THP2/background): A 0.305 C 0.195 G 0.195 T 0.305 ******************************************************************************** ******************************************************************************** MOTIF WGSYYBNKTGGCSYAGTGGKTARVGSS MEME-1 width = 27 sites = 63 llr = 1027 E-value = 4.8e-158 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGSYYBNKTGGCSYAGTGGKTARVGSS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5::::122:3:::1a2::::37542:: pos.-specific C 1:53433::::753::12:11:12154 probability G :9411325:7a:32:8:6a4::33644 matrix T 31154333a::324::92:56311112 bits 2.4 * 2.1 * * 1.9 * * 1.6 * * * * * Relative 1.4 * **** *** * Entropy 1.2 * **** *** * (23.5 bits) 0.9 * **** *** * * 0.7 ** ***** ****** * *** 0.5 **** ****** ******** *** 0.2 ****** ******************** 0.0 --------------------------- Multilevel AGCTCCCGTGGCCTAGTGGTTAAAGCG consensus T GCTGTT A TGC A T GATGG GC sequence T T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSYYBNKTGGCSYAGTGGKTARVGSS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chrIV:1150703-1151142 - 44 1.06e-11 AAAGTGTTTC AGTCCCAGTGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrX:197160-197260 - 46 1.55e-11 CAATAATATT AGGGCGTGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrII:197312-197689 + 43 2.25e-11 CCAGTAATCA AGGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXV:274483-274876 + 43 2.25e-11 TAAGTAATCG TGTCCCAGTGGCCGAGTGGTTAAGGCG ATGCCCTGCT chrVII:738905-739307 + 65 2.25e-11 CGAAAAAAAT AGGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTA chrXII:734632-735003 + 34 4.54e-11 CAACAAAGTT TGGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIV:434151-434488 - 42 8.81e-11 ACAAATCAGA AGCTTCTATGGCCAAGTTGGTAAGGCG CCACACTAGT chrVIII:115974-116394 - 20 8.81e-11 TCACTAATAG AGCTTCTATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXV:113643-113971 + 44 8.81e-11 TCAGAGATTT AGCTTCTATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIV:884171-884586 + 32 1.65e-10 CTTTCGAAAA TGCTCGTGTAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrIV:1305441-1305816 + 51 2.99e-10 ATACAAATTA AGGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:437572-437958 + 56 2.99e-10 ATCATTAGTA AGGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:1352324-1352710 - 46 3.99e-10 CCAACGAAAT AGCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrV:435650-435977 - 36 3.99e-10 CAACAATAAG AGCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:122109-122483 + 22 3.99e-10 CCAACGAATT AGCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrV:135298-135654 - 46 3.99e-10 CCAAGAAAAA AGCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:185580-185940 - 51 3.99e-10 TCAACGAAAT AGCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXI:379497-379867 + 47 9.05e-10 ACAGATTAAT AGGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:438523-438883 + 46 9.05e-10 TCAACAAATT AGGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:823302-823690 + 35 1.52e-09 CCAATAAGAG TGGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:372333-372686 - 34 1.52e-09 CAATAAAACC TGGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:469258-469642 + 56 1.52e-09 AAGAAATAAT TGGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXVI:689375-689776 + 39 2.20e-09 AGATTATTTT GGGCACTATGGCCGAGTGGTTAAGGCG ACAGACTTGA chrIII:90702-91071 + 22 3.54e-09 AACAAGTAAT TGGTTGTTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXIII:504685-505063 + 70 3.54e-09 AACAGATAAG TGGTTGTTTGGCCGAGCGGTCTAAGGC GCCT chrXII:628192-628656 + 8 3.54e-09 AAATAAG TGGTTGTTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:857293-857662 - 39 3.54e-09 AACAAATAAG TGGTTGTTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrIV:1175640-1176039 + 39 3.97e-09 TACAAAACAA AGCTTCAGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrX:422743-422843 + 40 6.24e-09 ATCCTTTGTA TGCTTCAGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrX:390935-391035 - 2 6.24e-09 CAAGAAATAG TGCTTCAGTAGCTCAGTAGGAAGAGCG T chrII:405659-406120 + 38 1.07e-08 AACAAATAGT AGCTCGCGTGGCGTAATGGCAACGCGT CTGACTTCTA chrXIII:747756-748170 - 25 1.07e-08 ACATATGACT AGCTCGCGTGGCGTAATGGCAACGCGT CTGACTTCTA chrIV:568699-569133 + 15 1.07e-08 GACAAATAGT AGCTCGCGTGGCGTAATGGCAACGCGT CTGACTTCTA chrXI:162330-162730 - 53 1.07e-08 AACAAATATT AGCTCGCGTGGCGTAATGGCAACGCGT CTGACTTCTA chrVII:736111-736551 + 58 1.07e-08 TAATTTCAAT AGCTCGCGTGGCGTAATGGCAACGCGT CTGACTTCTA chrXIV:102534-102911 + 43 1.32e-08 ATATATTATA AGACTCCATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXVI:769077-769519 - 29 1.78e-08 CGAAGAACTC ATCCTTGTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXV:438438-438924 + 11 1.78e-08 CGAAGAACTC ATCCTTGTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXVI:860160-860567 + 65 2.91e-08 GTAAATAACA AGCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCC chrVII:930868-931225 - 2 2.91e-08 ATAATCAGTA AGCGCAAGTGGTTTAGTGGTAAAATCC A chrVI:162023-162400 + 66 2.91e-08 CAAGAAAACA AGCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGC chrXVI:810521-810836 + 47 3.51e-08 TCATTATTTG CGACTCCATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrII:9455-9748 + 31 3.85e-08 AGAAAATTCG TGGAGGGTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXIII:808123-808517 - 22 4.63e-08 CAGAAGAAAA AGGTCCTATAGTGTAGTGGTTATCACT TTCGGTTCTG chrXII:962857-963233 - 35 6.61e-08 GTATTATCGA CGGAGGGTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrIII:168177-168600 - 9 6.61e-08 CAAGAAGTCC TGGTCCTATAGTGTAGTGGTTATCACT TTCGGTTT chrXV:281951-282368 + 54 7.21e-08 AACATGAAAG CGCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:661543-661947 + 53 7.21e-08 GGTAAAAATT TGCCTCCTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrVIII:388785-389206 - 25 9.31e-08 AACAGATACA TGGGCGTGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXI:490778-491143 + 57 9.31e-08 AATAATTCTT GTTCCTCGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXII:374139-374644 + 13 9.31e-08 AATAAATCTT GTTCCTCGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXII:448526-448897 - 35 1.10e-07 CAAGAAGTTC CGGTCCTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIV:802624-802912 - 59 1.10e-07 CATGAATTGT CGGTCCTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrXVI:435737-436169 - 36 1.79e-07 ATACAACAAA AGCTCGTATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrVIII:237680-238128 - 60 3.04e-07 ACAAATAGTA AGCGGATTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXV:594206-594621 - 37 3.52e-07 TTGATTGAAA CGCGCAAGTGGTTCAGTGGTTAGAATT TATGCTTCCC chrVII:779435-779815 + 40 4.68e-07 AAGTTAACCC CGGGCGGTTAGTGTAGTGGTTATCATC CCACCCTTCC chrVII:648971-649542 - 60 8.03e-07 GAAACATTAT TTCCTGTGTAGCCTAATGTTTAATGCC TAATTTTTTT chrXII:818428-818809 + 40 8.57e-07 TAATTTATTA TGCTCCTCTAGTGCAATGGTTAGCATG CATTCTTCCG chrX:354090-354190 + 22 1.10e-06 ATCATTTATC ACTCTCGGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrIV:1075355-1075727 - 28 1.25e-06 TCCGTAATAT TGTTCCAATAGTGTAGCGGCTATCACG TTGCCTTCAC chrXV:287966-288381 + 68 1.41e-06 AAAAATAGCT TCTCTCGGTAGCCAAGTTGGTTTAAGG CGCAAG chrX:517741-517841 - 19 2.81e-06 CATAAAAGTT AAGCGCCGTGGCGCAGTGGAAGCGCGC AGGGCTCATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSYYBNKTGGCSYAGTGGKTARVGSS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1150703-1151142 1.1e-11 43_[-1]_30 chrX:197160-197260 1.6e-11 45_[-1]_28 chrII:197312-197689 2.2e-11 42_[+1]_31 chrXV:274483-274876 2.2e-11 42_[+1]_31 chrVII:738905-739307 2.2e-11 64_[+1]_9 chrXII:734632-735003 4.5e-11 33_[+1]_40 chrIV:434151-434488 8.8e-11 41_[-1]_32 chrVIII:115974-116394 8.8e-11 19_[-1]_54 chrXV:113643-113971 8.8e-11 43_[+1]_30 chrIV:884171-884586 1.7e-10 31_[+1]_42 chrIV:1305441-1305816 3e-10 50_[+1]_23 chrIV:437572-437958 3e-10 55_[+1]_18 chrIV:1352324-1352710 4e-10 45_[-1]_28 chrV:435650-435977 4e-10 35_[-1]_38 chrVII:122109-122483 4e-10 21_[+1]_52 chrV:135298-135654 4e-10 45_[-1]_28 chrVII:185580-185940 4e-10 50_[-1]_23 chrXI:379497-379867 9.1e-10 46_[+1]_27 chrV:438523-438883 9.1e-10 45_[+1]_28 chrVII:823302-823690 1.5e-09 34_[+1]_39 chrXIII:372333-372686 1.5e-09 33_[-1]_40 chrV:469258-469642 1.5e-09 55_[+1]_18 chrXVI:689375-689776 2.2e-09 38_[+1]_35 chrIII:90702-91071 3.5e-09 21_[+1]_52 chrXIII:504685-505063 3.5e-09 69_[+1]_4 chrXII:628192-628656 3.5e-09 7_[+1]_66 chrVII:857293-857662 3.5e-09 38_[-1]_35 chrIV:1175640-1176039 4e-09 38_[+1]_35 chrX:422743-422843 6.2e-09 39_[+1]_34 chrX:390935-391035 6.2e-09 1_[-1]_72 chrII:405659-406120 1.1e-08 37_[+1]_36 chrXIII:747756-748170 1.1e-08 24_[-1]_49 chrIV:568699-569133 1.1e-08 14_[+1]_59 chrXI:162330-162730 1.1e-08 52_[-1]_21 chrVII:736111-736551 1.1e-08 57_[+1]_16 chrXIV:102534-102911 1.3e-08 42_[+1]_31 chrXVI:769077-769519 1.8e-08 28_[-1]_45 chrXV:438438-438924 1.8e-08 10_[+1]_63 chrXVI:860160-860567 2.9e-08 64_[+1]_9 chrVII:930868-931225 2.9e-08 1_[-1]_72 chrVI:162023-162400 2.9e-08 65_[+1]_8 chrXVI:810521-810836 3.5e-08 46_[+1]_27 chrII:9455-9748 3.9e-08 30_[+1]_43 chrXIII:808123-808517 4.6e-08 21_[-1]_52 chrXII:962857-963233 6.6e-08 34_[-1]_39 chrIII:168177-168600 6.6e-08 8_[-1]_65 chrXV:281951-282368 7.2e-08 53_[+1]_20 chrVII:661543-661947 7.2e-08 52_[+1]_21 chrVIII:388785-389206 9.3e-08 24_[-1]_49 chrXI:490778-491143 9.3e-08 56_[+1]_17 chrXII:374139-374644 9.3e-08 12_[+1]_61 chrXII:448526-448897 1.1e-07 34_[-1]_39 chrIV:802624-802912 1.1e-07 58_[-1]_15 chrXVI:435737-436169 1.8e-07 35_[-1]_38 chrVIII:237680-238128 3e-07 59_[-1]_14 chrXV:594206-594621 3.5e-07 36_[-1]_37 chrVII:779435-779815 4.7e-07 39_[+1]_34 chrVII:648971-649542 8e-07 59_[-1]_14 chrXII:818428-818809 8.6e-07 39_[+1]_34 chrX:354090-354190 1.1e-06 21_[+1]_52 chrIV:1075355-1075727 1.3e-06 27_[-1]_46 chrXV:287966-288381 1.4e-06 67_[+1]_6 chrX:517741-517841 2.8e-06 18_[-1]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSYYBNKTGGCSYAGTGGKTARVGSS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGSYYBNKTGGCSYAGTGGKTARVGSS width=27 seqs=63 chrIV:1150703-1151142 ( 44) AGTCCCAGTGGCCGAGTGGTTAAGGCG 1 chrX:197160-197260 ( 46) AGGGCGTGTGGCGTAGTCGGTAGCGCG 1 chrII:197312-197689 ( 43) AGGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrXV:274483-274876 ( 43) TGTCCCAGTGGCCGAGTGGTTAAGGCG 1 chrVII:738905-739307 ( 65) AGGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrXII:734632-735003 ( 34) TGGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrIV:434151-434488 ( 42) AGCTTCTATGGCCAAGTTGGTAAGGCG 1 chrVIII:115974-116394 ( 20) AGCTTCTATGGCCAAGTTGGTAAGGCG 1 chrXV:113643-113971 ( 44) AGCTTCTATGGCCAAGTTGGTAAGGCG 1 chrIV:884171-884586 ( 32) TGCTCGTGTAGCTCAGTGGTTAGAGCT 1 chrIV:1305441-1305816 ( 51) AGGCAACTTGGCCGAGTGGTTAAGGCG 1 chrIV:437572-437958 ( 56) AGGCAACTTGGCCGAGTGGTTAAGGCG 1 chrIV:1352324-1352710 ( 46) AGCCTTGTTGGCGCAATCGGTAGCGCG 1 chrV:435650-435977 ( 36) AGCCTTGTTGGCGCAATCGGTAGCGCG 1 chrVII:122109-122483 ( 22) AGCCTTGTTGGCGCAATCGGTAGCGCG 1 chrV:135298-135654 ( 46) AGCCTTGTTGGCGCAATCGGTAGCGCG 1 chrVII:185580-185940 ( 51) AGCCTTGTTGGCGCAATCGGTAGCGCG 1 chrXI:379497-379867 ( 47) AGGTTTCGTGGTCTAGTCGGTTATGGC 1 chrV:438523-438883 ( 46) AGGTTTCGTGGTCTAGTCGGTTATGGC 1 chrVII:823302-823690 ( 35) TGGTTTCGTGGTCTAGTCGGTTATGGC 1 chrXIII:372333-372686 ( 34) TGGTTTCGTGGTCTAGTCGGTTATGGC 1 chrV:469258-469642 ( 56) TGGTTTCGTGGTCTAGTCGGTTATGGC 1 chrXVI:689375-689776 ( 39) GGGCACTATGGCCGAGTGGTTAAGGCG 1 chrIII:90702-91071 ( 22) TGGTTGTTTGGCCGAGCGGTCTAAGGC 1 chrXIII:504685-505063 ( 70) TGGTTGTTTGGCCGAGCGGTCTAAGGC 1 chrXII:628192-628656 ( 8) TGGTTGTTTGGCCGAGCGGTCTAAGGC 1 chrVII:857293-857662 ( 39) TGGTTGTTTGGCCGAGCGGTCTAAGGC 1 chrIV:1175640-1176039 ( 39) AGCTTCAGTAGCTCAGTAGGAAGAGCG 1 chrX:422743-422843 ( 40) TGCTTCAGTAGCTCAGTAGGAAGAGCG 1 chrX:390935-391035 ( 2) TGCTTCAGTAGCTCAGTAGGAAGAGCG 1 chrII:405659-406120 ( 38) AGCTCGCGTGGCGTAATGGCAACGCGT 1 chrXIII:747756-748170 ( 25) AGCTCGCGTGGCGTAATGGCAACGCGT 1 chrIV:568699-569133 ( 15) AGCTCGCGTGGCGTAATGGCAACGCGT 1 chrXI:162330-162730 ( 53) AGCTCGCGTGGCGTAATGGCAACGCGT 1 chrVII:736111-736551 ( 58) AGCTCGCGTGGCGTAATGGCAACGCGT 1 chrXIV:102534-102911 ( 43) AGACTCCATGGCCAAGTTGGTTAAGGC 1 chrXVI:769077-769519 ( 29) ATCCTTGTTAGCTCAGTTGGTAGAGCG 1 chrXV:438438-438924 ( 11) ATCCTTGTTAGCTCAGTTGGTAGAGCG 1 chrXVI:860160-860567 ( 65) AGCGCAAGTGGTTTAGTGGTAAAATCC 1 chrVII:930868-931225 ( 2) AGCGCAAGTGGTTTAGTGGTAAAATCC 1 chrVI:162023-162400 ( 66) AGCGCAAGTGGTTTAGTGGTAAAATCC 1 chrXVI:810521-810836 ( 47) CGACTCCATGGCCAAGTTGGTTAAGGC 1 chrII:9455-9748 ( 31) TGGAGGGTTGGCCGAGTGGTCTAAGGC 1 chrXIII:808123-808517 ( 22) AGGTCCTATAGTGTAGTGGTTATCACT 1 chrXII:962857-963233 ( 35) CGGAGGGTTGGCCGAGTGGTCTAAGGC 1 chrIII:168177-168600 ( 9) TGGTCCTATAGTGTAGTGGTTATCACT 1 chrXV:281951-282368 ( 54) CGCGCAAGTGGTTTAGTGGTAAAATCC 1 chrVII:661543-661947 ( 53) TGCCTCCTTAGCTTAGTGGTAGAGCGT 1 chrVIII:388785-389206 ( 25) TGGGCGTGTGGTCTAGTGGTATGATTC 1 chrXI:490778-491143 ( 57) GTTCCTCGTGGCCCAATGGTCACGGCG 1 chrXII:374139-374644 ( 13) GTTCCTCGTGGCCCAATGGTCACGGCG 1 chrXII:448526-448897 ( 35) CGGTCCTATAGTGTAGTGGTTATCACT 1 chrIV:802624-802912 ( 59) CGGTCCTATAGTGTAGTGGTTATCACT 1 chrXVI:435737-436169 ( 36) AGCTCGTATGGCGCAGTGGTAGCGCAG 1 chrVIII:237680-238128 ( 60) AGCGGATTTAGCTCAGTTGGGAGAGCG 1 chrXV:594206-594621 ( 37) CGCGCAAGTGGTTCAGTGGTTAGAATT 1 chrVII:779435-779815 ( 40) CGGGCGGTTAGTGTAGTGGTTATCATC 1 chrVII:648971-649542 ( 60) TTCCTGTGTAGCCTAATGTTTAATGCC 1 chrXII:818428-818809 ( 40) TGCTCCTCTAGTGCAATGGTTAGCATG 1 chrX:354090-354190 ( 22) ACTCTCGGTAGCCAAGTTGGTTTAAGG 1 chrIV:1075355-1075727 ( 28) TGTTCCAATAGTGTAGCGGCTATCACG 1 chrXV:287966-288381 ( 68) TCTCTCGGTAGCCAAGTTGGTTTAAGG 1 chrX:517741-517841 ( 19) AAGCGCCGTGGCGCAGTGGAAGCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSYYBNKTGGCSYAGTGGKTARVGSS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 35964 bayes= 8.28416 E= 4.8e-158 78 -81 -203 6 -426 -262 216 -194 -326 124 102 -146 -326 77 -45 69 -268 119 -162 54 -126 77 47 -18 -80 77 -4 -2 -68 -362 124 13 -1262 -1262 -1262 171 -9 -1262 187 -1262 -1262 -1262 236 -1262 -1262 187 -1262 -9 -1262 129 70 -56 -146 77 -16 32 171 -1262 -1262 -1262 -46 -1262 199 -1262 -1262 -130 -1262 159 -268 -16 155 -56 -1262 -1262 233 -426 -426 -104 113 59 -26 -62 -362 98 109 -1262 -203 -2 64 -45 38 -126 44 8 55 -168 -94 -62 170 -194 -426 142 102 -226 -1262 96 113 -68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSYYBNKTGGCSYAGTGGKTARVGSS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 63 E= 4.8e-158 0.523810 0.111111 0.047619 0.317460 0.015873 0.031746 0.873016 0.079365 0.031746 0.460317 0.396825 0.111111 0.031746 0.333333 0.142857 0.492063 0.047619 0.444444 0.063492 0.444444 0.126984 0.333333 0.269841 0.269841 0.174603 0.333333 0.190476 0.301587 0.190476 0.015873 0.460317 0.333333 0.000000 0.000000 0.000000 1.000000 0.285714 0.000000 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.476190 0.317460 0.206349 0.111111 0.333333 0.174603 0.380952 1.000000 0.000000 0.000000 0.000000 0.222222 0.000000 0.777778 0.000000 0.000000 0.079365 0.000000 0.920635 0.047619 0.174603 0.571429 0.206349 0.000000 0.000000 0.984127 0.015873 0.015873 0.095238 0.428571 0.460317 0.253968 0.126984 0.015873 0.603175 0.650794 0.000000 0.047619 0.301587 0.476190 0.142857 0.253968 0.126984 0.412698 0.206349 0.285714 0.095238 0.158730 0.126984 0.634921 0.079365 0.015873 0.523810 0.396825 0.063492 0.000000 0.380952 0.428571 0.190476 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSYYBNKTGGCSYAGTGGKTARVGSS MEME-1 regular expression -------------------------------------------------------------------------------- [AT]G[CG][TC][CT][CGT][CT][GT]T[GA]G[CT][CGT][TC]A[GA]T[GT]G[TG][TA][AT][AG][AGC]G[CG][GC] -------------------------------------------------------------------------------- Time 227.14 secs. ******************************************************************************** ******************************************************************************** MOTIF CTHWTAATCHKRAGRTYMKGGGTTCGANY MEME-2 width = 29 sites = 26 llr = 560 E-value = 2.6e-082 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTHWTAATCHKRAGRTYMKGGGTTCGANY MEME-2 Description -------------------------------------------------------------------------------- Simplified A :13218a::4:58152:51:2::::2a2: pos.-specific C 713211:282:::1::73231:::a::36 probability G 2::2:1::2265285::2577a:::8:2: matrix T 18348::7:34::::83:3:::aa:::24 bits 2.4 * * 2.1 * * 1.9 * * 1.6 * ****** Relative 1.4 * * * ****** Entropy 1.2 * * * ** * * ****** * (31.1 bits) 0.9 * * * ******* ******** * 0.7 ** ***** ******* ******** * 0.5 ** ***** ***************** * 0.2 *** ***** ***************** * 0.0 ----------------------------- Multilevel CTCTTAATCAGAAGATCAGGGGTTCGACC consensus AA CGTTGG G TCTC AT sequence T G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTHWTAATCHKRAGRTYMKGGGTTCGANY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIV:1352324-1352710 - 12 1.42e-14 GCGCGTATGA CTCTTAATCATAAGGTTAGGGGTTCGAGC CCCCTACAGG chrV:435650-435977 - 2 1.42e-14 GCGCGTATGA CTCTTAATCATAAGGTTAGGGGTTCGAGC C chrVII:122109-122483 + 54 1.42e-14 GCGCGTATGA CTCTTAATCATAAGGTTAGGGGTTCGAGC CCCCTACAGG chrV:135298-135654 - 12 1.42e-14 GCGCGTATGA CTCTTAATCATAAGGTTAGGGGTTCGAGC CCCCTACAGG chrVII:185580-185940 - 17 1.42e-14 GCGCGTATGA CTCTTAATCATAAGGTTAGGGGTTCGAGC CCCCTACAGG chrII:405659-406120 + 69 1.90e-13 ACGCGTCTGA CTTCTAATCAGAAGATTATGGGTTCGACC CCC chrIV:568699-569133 + 46 1.90e-13 ACGCGTCTGA CTTCTAATCAGAAGATTATGGGTTCGACC CCCATCGTGA chrXI:162330-162730 - 20 1.90e-13 ACGCGTCTGA CTTCTAATCAGAAGATTATGGGTTCGACC CCCATCGTGA chrXII:734632-735003 + 67 1.99e-12 AGGCACCGTG CTAATAACGCGGGGATCAGCGGTTCGATC CCGCT chrXVI:819324-819882 + 8 1.99e-12 CACCGTG CTAATAACGCGGGGATCAGCGGTTCGATC CCGCTAGAGA chrXVI:819324-819874 + 12 1.99e-12 AGGCACCGTG CTAATAACGCGGGGATCAGCGGTTCGATC CCGCTAGAGA chrX:422743-422843 + 72 1.39e-11 GAGCGTCAGT CTCATAATCTGAAGGTCGAGAGTTCGAAC chrIV:1175640-1176039 + 71 1.39e-11 GAGCGTCAGT CTCATAATCTGAAGGTCGAGAGTTCGAAC C chrII:266211-266651 + 28 4.90e-11 AGGCGCCACA CTAGTAATGTGGAGATCATCGGTTCAAAT CCGATTGGAA chrIV:434151-434488 - 8 4.90e-11 AGGCGCCACA CTAGTAATGTGGAGATCATCGGTTCAAAT CCGATTG chrXII:448526-448897 - 2 9.51e-10 ATCACTTTCG GTTTTGATCCGGACAACCCCGGTTCGAAT C chrIV:802624-802912 - 26 9.51e-10 ATCACTTTCG GTTTTGATCCGGACAACCCCGGTTCGAAT CCGGGTAGGA chrVIII:237680-238128 - 7 1.10e-09 AAACTTCGGT CAAGTTATCTGGAGGTCCTGTGTTCGATC CACAGA chrXII:975822-976168 - 51 1.18e-09 AGGCGTGCGA CTGTTAATCGCAAGATCGTGAGTTCAACC CTCACTGGGG chrX:354090-354190 + 70 1.55e-09 AATTTACCAC TACGAAATCTTGAGATCGGGCGTTCGACT CG chrIV:946230-946585 + 2 1.55e-09 C TACGAAATCTTGAGATCGGGCGTTCGACT CGCCCCCGGG chrV:487208-487552 - 14 3.55e-09 ATCACATCAC GCTTTCACCGTGGAGACCGGGGTTCGACT CCCCGTATCG chrVII:541641-542099 + 60 3.55e-09 ATCACATCAC GCTTTCACCGTGGAGACCGGGGTTCGACT CCCCGTATCG chrXII:374139-374644 + 45 4.50e-09 CGGCGTCTGG CTACGAACCAGAAGATTCCAGGTTCAAGT CCTGGCGGGG chrVII:779435-779815 + 71 1.24e-08 ATCATCCCAC CCTTCCAAGGTGGGGACACGGGTTCGATT C chrVII:823302-823690 + 68 3.09e-08 TGGCATCTGC TTAACACGCAGAACGTCCCCAGTTCGATC CTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTHWTAATCHKRAGRTYMKGGGTTCGANY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1352324-1352710 1.4e-14 11_[-2]_60 chrV:435650-435977 1.4e-14 1_[-2]_70 chrVII:122109-122483 1.4e-14 53_[+2]_18 chrV:135298-135654 1.4e-14 11_[-2]_60 chrVII:185580-185940 1.4e-14 16_[-2]_55 chrII:405659-406120 1.9e-13 68_[+2]_3 chrIV:568699-569133 1.9e-13 45_[+2]_26 chrXI:162330-162730 1.9e-13 19_[-2]_52 chrXII:734632-735003 2e-12 66_[+2]_5 chrXVI:819324-819882 2e-12 7_[+2]_64 chrXVI:819324-819874 2e-12 11_[+2]_60 chrX:422743-422843 1.4e-11 71_[+2] chrIV:1175640-1176039 1.4e-11 70_[+2]_1 chrII:266211-266651 4.9e-11 27_[+2]_44 chrIV:434151-434488 4.9e-11 7_[-2]_64 chrXII:448526-448897 9.5e-10 1_[-2]_70 chrIV:802624-802912 9.5e-10 25_[-2]_46 chrVIII:237680-238128 1.1e-09 6_[-2]_65 chrXII:975822-976168 1.2e-09 50_[-2]_21 chrX:354090-354190 1.6e-09 69_[+2]_2 chrIV:946230-946585 1.6e-09 1_[+2]_70 chrV:487208-487552 3.6e-09 13_[-2]_58 chrVII:541641-542099 3.6e-09 59_[+2]_12 chrXII:374139-374644 4.5e-09 44_[+2]_27 chrVII:779435-779815 1.2e-08 70_[+2]_1 chrVII:823302-823690 3.1e-08 67_[+2]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTHWTAATCHKRAGRTYMKGGGTTCGANY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTHWTAATCHKRAGRTYMKGGGTTCGANY width=29 seqs=26 chrIV:1352324-1352710 ( 12) CTCTTAATCATAAGGTTAGGGGTTCGAGC 1 chrV:435650-435977 ( 2) CTCTTAATCATAAGGTTAGGGGTTCGAGC 1 chrVII:122109-122483 ( 54) CTCTTAATCATAAGGTTAGGGGTTCGAGC 1 chrV:135298-135654 ( 12) CTCTTAATCATAAGGTTAGGGGTTCGAGC 1 chrVII:185580-185940 ( 17) CTCTTAATCATAAGGTTAGGGGTTCGAGC 1 chrII:405659-406120 ( 69) CTTCTAATCAGAAGATTATGGGTTCGACC 1 chrIV:568699-569133 ( 46) CTTCTAATCAGAAGATTATGGGTTCGACC 1 chrXI:162330-162730 ( 20) CTTCTAATCAGAAGATTATGGGTTCGACC 1 chrXII:734632-735003 ( 67) CTAATAACGCGGGGATCAGCGGTTCGATC 1 chrXVI:819324-819882 ( 8) CTAATAACGCGGGGATCAGCGGTTCGATC 1 chrXVI:819324-819874 ( 12) CTAATAACGCGGGGATCAGCGGTTCGATC 1 chrX:422743-422843 ( 72) CTCATAATCTGAAGGTCGAGAGTTCGAAC 1 chrIV:1175640-1176039 ( 71) CTCATAATCTGAAGGTCGAGAGTTCGAAC 1 chrII:266211-266651 ( 28) CTAGTAATGTGGAGATCATCGGTTCAAAT 1 chrIV:434151-434488 ( 8) CTAGTAATGTGGAGATCATCGGTTCAAAT 1 chrXII:448526-448897 ( 2) GTTTTGATCCGGACAACCCCGGTTCGAAT 1 chrIV:802624-802912 ( 26) GTTTTGATCCGGACAACCCCGGTTCGAAT 1 chrVIII:237680-238128 ( 7) CAAGTTATCTGGAGGTCCTGTGTTCGATC 1 chrXII:975822-976168 ( 51) CTGTTAATCGCAAGATCGTGAGTTCAACC 1 chrX:354090-354190 ( 70) TACGAAATCTTGAGATCGGGCGTTCGACT 1 chrIV:946230-946585 ( 2) TACGAAATCTTGAGATCGGGCGTTCGACT 1 chrV:487208-487552 ( 14) GCTTTCACCGTGGAGACCGGGGTTCGACT 1 chrVII:541641-542099 ( 60) GCTTTCACCGTGGAGACCGGGGTTCGACT 1 chrXII:374139-374644 ( 45) CTACGAACCAGAAGATTCCAGGTTCAAGT 1 chrVII:779435-779815 ( 71) CCTTCCAAGGTGGGGACACGGGTTCGATT 1 chrVII:823302-823690 ( 68) TTAACACGCAGAACGTCCCCAGTTCGATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTHWTAATCHKRAGRTYMKGGGTTCGANY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 34992 bayes= 10.9241 E= 2.6e-082 -1134 190 -34 -140 -140 -76 -1134 134 1 83 -234 1 -40 -34 -2 47 -198 -134 -234 141 134 -76 -134 -298 166 -234 -1134 -1134 -298 24 -234 118 -1134 198 24 -1134 34 -2 -34 -18 -1134 -234 156 34 71 -1134 136 -1134 134 -1134 24 -1134 -198 -76 205 -1134 82 -1134 124 -1134 -66 -1134 -1134 141 -1134 174 -1134 18 82 46 -2 -1134 -198 -2 124 -18 -298 66 174 -1134 -99 -134 190 -298 -1134 -1134 236 -1134 -1134 -1134 -1134 171 -1134 -1134 -1134 171 -1134 236 -1134 -1134 -99 -1134 212 -1134 171 -1134 -1134 -1134 -40 66 24 -40 -1134 166 -1134 34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTHWTAATCHKRAGRTYMKGGGTTCGANY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 26 E= 2.6e-082 0.000000 0.730769 0.153846 0.115385 0.115385 0.115385 0.000000 0.769231 0.307692 0.346154 0.038462 0.307692 0.230769 0.153846 0.192308 0.423077 0.076923 0.076923 0.038462 0.807692 0.769231 0.115385 0.076923 0.038462 0.961538 0.038462 0.000000 0.000000 0.038462 0.230769 0.038462 0.692308 0.000000 0.769231 0.230769 0.000000 0.384615 0.192308 0.153846 0.269231 0.000000 0.038462 0.576923 0.384615 0.500000 0.000000 0.500000 0.000000 0.769231 0.000000 0.230769 0.000000 0.076923 0.115385 0.807692 0.000000 0.538462 0.000000 0.461538 0.000000 0.192308 0.000000 0.000000 0.807692 0.000000 0.653846 0.000000 0.346154 0.538462 0.269231 0.192308 0.000000 0.076923 0.192308 0.461538 0.269231 0.038462 0.307692 0.653846 0.000000 0.153846 0.076923 0.730769 0.038462 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.153846 0.000000 0.846154 0.000000 1.000000 0.000000 0.000000 0.000000 0.230769 0.307692 0.230769 0.230769 0.000000 0.615385 0.000000 0.384615 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTHWTAATCHKRAGRTYMKGGGTTCGANY MEME-2 regular expression -------------------------------------------------------------------------------- CT[CAT][TA]TAA[TC][CG][AT][GT][AG][AG]G[AG]T[CT][AC][GT][GC]GGTTCGA[CAGT][CT] -------------------------------------------------------------------------------- Time 434.62 secs. ******************************************************************************** ******************************************************************************** MOTIF AADATGTACGGRTGTAAA MEME-3 width = 18 sites = 37 llr = 484 E-value = 8.9e-033 ******************************************************************************** -------------------------------------------------------------------------------- Motif AADATGTACGGRTGTAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 6658:::8:1:5::1756 pos.-specific C 1:::::2:7:::::2:12 probability G 123219:1:9a5:a1111 matrix T 222:9:8131::a:7221 bits 2.4 * 2.1 * * 1.9 * * * 1.6 * ** ** Relative 1.4 * ** ** Entropy 1.2 **** *** ** (18.9 bits) 0.9 *********** 0.7 *********** * 0.5 * ************* 0.2 ****************** 0.0 ------------------ Multilevel AAAATGTACGGATGTAAA consensus GG T G T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADATGTACGGRTGTAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------ chrXII:241651-242009 - 24 5.17e-09 GTTTACATTT TATATGTACGGATGTAAA AAGGGAAATA chrV:396213-396573 - 33 5.17e-09 TGGGTTCACA AAAGTGTACGGATGTATA CAACAGGGAA chrXIII:225365-225734 - 43 7.36e-09 AATAAAAAAT AGAATGTACGGATGTAAT GCACGGATGT chrXIV:63133-63533 + 33 8.93e-09 GTGGGTTGCT AAAATGTTCGGATGTAAA GTAGTATTGA chrVI:221768-222063 + 53 1.24e-08 TTGGGTGTTA AAAATGTACGGGTGAAAA AAGTCTTATT chrVI:65003-65317 + 55 1.91e-08 GTTATCTCTG AATATGTACGGGTGTTGA CATGGAGAAA chrII:605729-606097 - 50 2.18e-08 GGTGATGGTG AAGATGTACAGGTGTAAA ACTGTCAGAC chrII:89630-89957 + 56 2.48e-08 GGTGTTAAAG AGGGTGTATGGATGTAAA GTCACAAAAG chrVII:534800-535230 + 37 3.73e-08 ATGGGTTACA CAAATGCACGGATGCAAA TATAAAATAT chrVII:555334-555678 - 51 3.73e-08 CCAAACACTT TTAATGCACGGGTGTAAA AGGGATGTAC chrXII:932155-932492 + 25 4.25e-08 ATACTATGTA ATAATGCACGGATGTAGA GAAACAGAAA chrXV:678882-679160 + 37 4.25e-08 ATGGGTCCAC AATATGTACGGATGTATG GTCCCAAAAG chrXII:922114-922561 - 55 4.87e-08 CGAGAATTGG AATATGTACGGGTGTCAA TTTCAAACGT chrXV:1028702-1029124 + 42 4.87e-08 GTAAACAAAT CAAATGTACGGATGCACA ATGGTAAACA chrVII:254178-254546 + 33 6.27e-08 TACATCTTTC AATATGCACGGGTGCAAC CTCAAATATT chrII:45010-45335 - 45 1.12e-07 AAACATACAT AGAATGTACGGATGCATG ATTGTCTCAG chrVIII:382922-383316 + 30 1.40e-07 ATTTATTTTC ATGATGTATGGGTGTATC GGATGTTCGG chrXVI:406168-406530 - 69 1.56e-07 TTTGGAGGTG GAAAGGTACGGATGTTAA ACTTCATAAA chrVII:438610-438890 + 56 1.74e-07 GTAAAGTTCC AAAATGTATGGATGGTAA GGTCTTTTTC chrXI:618823-619196 + 50 4.70e-07 ACAAATCTAT TAGAGGCACGGATGGAAA TAGTATTTAA chrVIII:125920-126314 - 32 6.17e-07 TGTAAAGATG TAGGTGTACGGATGCATT AACGTCTTTC chrVII:726451-726752 - 33 7.37e-07 ATGGGTGTAT ATAGGGTATGGGTGTACA GTTAATTTCA chrI:81971-82208 + 69 7.37e-07 TCATCTAGCG GAGGTGCACGGATGTACC AACAGTTTTA chrIV:221958-222305 + 52 7.37e-07 AAATGAGATA AGGGTGTACGGGTGTGGT AACCGTCGTG chrXIII:551371-551795 - 67 8.78e-07 TATGGGTGCC AATATGTACTGATGTTTA AGTAATACGG chrX:90075-90175 - 34 9.56e-07 TGTATGGGTG AGAATGTTCAGGTGCAAA TTGAAAAGGA chrIX:99655-99989 + 36 1.13e-06 GTTTCATGAA TAAATGTACTGGTGTTAC ATGGTGTACC chrIV:308026-308364 - 76 1.23e-06 GCCTGCA TATATGTAAGGATGTAAC AGGAAATGTA chrIV:117166-117576 - 62 2.30e-06 ATTAAATGTA AAAAGTTATGGGTGTAGA TATGTATGGG chrXV:866569-866952 - 25 2.48e-06 ATACAAACCC AGAATGCTTGGATGTAGG GAAAAAATTG chrVII:899831-900039 + 36 3.32e-06 TATGCTAATG AGTATATACGGGTGGACA AATCACTACT chrXIII:732048-732374 + 59 4.10e-06 CCGCACATCG CGCATGTGTGGGTGTATA TGCCCTTTTC chrXIII:754443-754790 + 4 4.39e-06 TTC TGGATGTATGGGGGTATT TTATGTTTGG chrXII:1028253-1028560 + 55 5.75e-06 CCCATGCACC AAAATGTATGGGTCATAA TTTTTTTTCT chrVII:310496-310895 - 38 5.75e-06 GTGTGGGTCC CTGGTGTACAGATGTTAC ATTGGTTACA chrXV:505123-505487 - 61 5.75e-06 AATACCATAT CATATGTTTGGGTGTGAT AAGGTTCATT chrX:75358-75458 + 26 6.98e-06 TTTTCAAATA GTGAGGTGTGGATGTATA GAGAAATTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADATGTACGGRTGTAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:241651-242009 5.2e-09 23_[-3]_59 chrV:396213-396573 5.2e-09 32_[-3]_50 chrXIII:225365-225734 7.4e-09 42_[-3]_40 chrXIV:63133-63533 8.9e-09 32_[+3]_50 chrVI:221768-222063 1.2e-08 52_[+3]_30 chrVI:65003-65317 1.9e-08 54_[+3]_28 chrII:605729-606097 2.2e-08 49_[-3]_33 chrII:89630-89957 2.5e-08 55_[+3]_27 chrVII:534800-535230 3.7e-08 36_[+3]_46 chrVII:555334-555678 3.7e-08 50_[-3]_32 chrXII:932155-932492 4.3e-08 24_[+3]_58 chrXV:678882-679160 4.3e-08 36_[+3]_46 chrXII:922114-922561 4.9e-08 54_[-3]_28 chrXV:1028702-1029124 4.9e-08 41_[+3]_41 chrVII:254178-254546 6.3e-08 32_[+3]_50 chrII:45010-45335 1.1e-07 44_[-3]_38 chrVIII:382922-383316 1.4e-07 29_[+3]_53 chrXVI:406168-406530 1.6e-07 68_[-3]_14 chrVII:438610-438890 1.7e-07 55_[+3]_27 chrXI:618823-619196 4.7e-07 49_[+3]_33 chrVIII:125920-126314 6.2e-07 31_[-3]_51 chrVII:726451-726752 7.4e-07 32_[-3]_50 chrI:81971-82208 7.4e-07 68_[+3]_14 chrIV:221958-222305 7.4e-07 51_[+3]_31 chrXIII:551371-551795 8.8e-07 66_[-3]_16 chrX:90075-90175 9.6e-07 33_[-3]_49 chrIX:99655-99989 1.1e-06 35_[+3]_47 chrIV:308026-308364 1.2e-06 75_[-3]_7 chrIV:117166-117576 2.3e-06 61_[-3]_21 chrXV:866569-866952 2.5e-06 24_[-3]_58 chrVII:899831-900039 3.3e-06 35_[+3]_47 chrXIII:732048-732374 4.1e-06 58_[+3]_24 chrXIII:754443-754790 4.4e-06 3_[+3]_79 chrXII:1028253-1028560 5.7e-06 54_[+3]_28 chrVII:310496-310895 5.7e-06 37_[-3]_45 chrXV:505123-505487 5.7e-06 60_[-3]_22 chrX:75358-75458 7e-06 25_[+3]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADATGTACGGRTGTAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AADATGTACGGRTGTAAA width=18 seqs=37 chrXII:241651-242009 ( 24) TATATGTACGGATGTAAA 1 chrV:396213-396573 ( 33) AAAGTGTACGGATGTATA 1 chrXIII:225365-225734 ( 43) AGAATGTACGGATGTAAT 1 chrXIV:63133-63533 ( 33) AAAATGTTCGGATGTAAA 1 chrVI:221768-222063 ( 53) AAAATGTACGGGTGAAAA 1 chrVI:65003-65317 ( 55) AATATGTACGGGTGTTGA 1 chrII:605729-606097 ( 50) AAGATGTACAGGTGTAAA 1 chrII:89630-89957 ( 56) AGGGTGTATGGATGTAAA 1 chrVII:534800-535230 ( 37) CAAATGCACGGATGCAAA 1 chrVII:555334-555678 ( 51) TTAATGCACGGGTGTAAA 1 chrXII:932155-932492 ( 25) ATAATGCACGGATGTAGA 1 chrXV:678882-679160 ( 37) AATATGTACGGATGTATG 1 chrXII:922114-922561 ( 55) AATATGTACGGGTGTCAA 1 chrXV:1028702-1029124 ( 42) CAAATGTACGGATGCACA 1 chrVII:254178-254546 ( 33) AATATGCACGGGTGCAAC 1 chrII:45010-45335 ( 45) AGAATGTACGGATGCATG 1 chrVIII:382922-383316 ( 30) ATGATGTATGGGTGTATC 1 chrXVI:406168-406530 ( 69) GAAAGGTACGGATGTTAA 1 chrVII:438610-438890 ( 56) AAAATGTATGGATGGTAA 1 chrXI:618823-619196 ( 50) TAGAGGCACGGATGGAAA 1 chrVIII:125920-126314 ( 32) TAGGTGTACGGATGCATT 1 chrVII:726451-726752 ( 33) ATAGGGTATGGGTGTACA 1 chrI:81971-82208 ( 69) GAGGTGCACGGATGTACC 1 chrIV:221958-222305 ( 52) AGGGTGTACGGGTGTGGT 1 chrXIII:551371-551795 ( 67) AATATGTACTGATGTTTA 1 chrX:90075-90175 ( 34) AGAATGTTCAGGTGCAAA 1 chrIX:99655-99989 ( 36) TAAATGTACTGGTGTTAC 1 chrIV:308026-308364 ( 76) TATATGTAAGGATGTAAC 1 chrIV:117166-117576 ( 62) AAAAGTTATGGGTGTAGA 1 chrXV:866569-866952 ( 25) AGAATGCTTGGATGTAGG 1 chrVII:899831-900039 ( 36) AGTATATACGGGTGGACA 1 chrXIII:732048-732374 ( 59) CGCATGTGTGGGTGTATA 1 chrXIII:754443-754790 ( 4) TGGATGTATGGGGGTATT 1 chrXII:1028253-1028560 ( 55) AAAATGTATGGGTCATAA 1 chrVII:310496-310895 ( 38) CTGGTGTACAGATGTTAC 1 chrXV:505123-505487 ( 61) CATATGTTTGGGTGTGAT 1 chrX:75358-75458 ( 26) GTGAGGTGTGGATGTATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADATGTACGGRTGTAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 18 n= 40338 bayes= 10.9628 E= 8.9e-033 96 -53 -127 -69 96 -1185 32 -91 59 -285 47 -33 141 -1185 -5 -1185 -1185 -1185 -53 150 -349 -1185 228 -349 -1185 -5 -1185 141 146 -1185 -185 -149 -349 179 -1185 -4 -191 -1185 215 -249 -1185 -1185 236 -1185 83 -1185 123 -1185 -1185 -1185 -285 167 -1185 -285 232 -1185 -249 -27 -127 120 126 -285 -185 -69 75 -85 -53 -33 103 -27 -127 -117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADATGTACGGRTGTAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 18 nsites= 37 E= 8.9e-033 0.594595 0.135135 0.081081 0.189189 0.594595 0.000000 0.243243 0.162162 0.459459 0.027027 0.270270 0.243243 0.810811 0.000000 0.189189 0.000000 0.000000 0.000000 0.135135 0.864865 0.027027 0.000000 0.945946 0.027027 0.000000 0.189189 0.000000 0.810811 0.837838 0.000000 0.054054 0.108108 0.027027 0.675676 0.000000 0.297297 0.081081 0.000000 0.864865 0.054054 0.000000 0.000000 1.000000 0.000000 0.540541 0.000000 0.459459 0.000000 0.000000 0.000000 0.027027 0.972973 0.000000 0.027027 0.972973 0.000000 0.054054 0.162162 0.081081 0.702703 0.729730 0.027027 0.054054 0.189189 0.513514 0.108108 0.135135 0.243243 0.621622 0.162162 0.081081 0.135135 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADATGTACGGRTGTAAA MEME-3 regular expression -------------------------------------------------------------------------------- A[AG][AGT]ATGTA[CT]GG[AG]TGTA[AT]A -------------------------------------------------------------------------------- Time 643.48 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:619776-621475 2.07e-01 100 chrVII:148131-148761 3.89e-01 100 chrIV:564136-564766 5.82e-02 100 chrXI:283609-284845 9.97e-03 29_[+1(5.53e-05)]_44 chrXII:910486-911116 9.70e-01 100 chrVII:479172-482821 5.37e-02 100 chrXIII:161919-162847 1.02e-01 100 chrXII:810124-815937 9.81e-01 100 chrV:397243-397873 4.73e-02 100 chrXIII:887073-889200 1.21e-01 100 chrIV:884171-884586 8.25e-07 31_[+1(1.65e-10)]_42 chrVII:736111-736551 3.94e-05 57_[+1(1.07e-08)]_16 chrXVI:435737-436169 8.24e-06 2_[-2(4.02e-05)]_4_[-1(1.79e-07)]_\ 38 chrX:652099-652199 9.96e-01 100 chrIV:488502-489063 1.21e-01 2_[-3(6.06e-05)]_80 chrV:423861-424491 2.20e-01 100 chrI:71854-73586 4.46e-01 100 chrXV:890023-890653 8.32e-01 100 chrXII:374139-374644 2.69e-09 12_[+1(9.31e-08)]_5_[+2(4.50e-09)]_\ 27 chrII:605729-606097 4.01e-05 49_[-3(2.18e-08)]_33 chrXVI:701691-702344 5.78e-01 100 chrXV:31166-32807 5.79e-01 100 chrV:223271-224530 8.56e-01 100 chrXV:622388-623521 7.86e-01 100 chrX:442448-442548 5.33e-01 100 chrXII:538502-539132 7.34e-01 100 chrVII:439192-439822 6.05e-01 100 chrXII:132743-133108 5.67e-01 100 chrXII:65474-65673 2.88e-01 100 chrXIV:88985-89613 4.18e-01 100 chrXI:100820-106999 3.56e-01 100 chrVII:661543-661947 1.25e-04 52_[+1(7.21e-08)]_21 chrIX:389157-391063 4.33e-02 66_[+3(5.55e-05)]_16 chrXV:723304-725202 7.35e-01 100 chrXII:440691-441560 9.42e-01 100 chrXIV:181467-182097 8.42e-01 100 chrIV:1402504-1403134 7.29e-01 100 chrVIII:126920-127102 6.22e-01 100 chrVII:641254-641466 1.00e+00 100 chrXII:263571-263867 1.90e-01 100 chrXVI:109148-114534 3.68e-01 100 chrXVI:376806-377436 6.97e-01 100 chrII:231400-232030 6.35e-01 100 chrII:394204-397478 1.50e-01 100 chrVI:64149-64502 7.57e-01 100 chrX:123734-123834 1.22e-01 100 chrXII:819797-820427 2.66e-01 100 chrXV:780004-780899 4.05e-03 12_[-1(4.98e-05)]_61 chrXVI:532925-533555 3.61e-01 100 chrXIII:119894-120524 1.32e-02 100 chrXVI:404972-405806 2.36e-01 100 chrVII:609671-609867 1.69e-01 100 chrXIII:753461-754091 5.58e-01 100 chrV:438523-438883 1.19e-05 45_[+1(9.05e-10)]_28 chrXV:438438-438924 2.70e-06 10_[+1(1.78e-08)]_28_[+2(4.54e-05)]_\ 6 chrIX:23812-25371 1.66e-03 100 chrIV:382005-382348 9.33e-01 100 chrII:89029-89659 1.82e-01 100 chrIV:130123-130753 9.47e-01 100 chrXIV:654493-655781 5.89e-02 100 chrVII:555334-555678 3.26e-05 50_[-3(3.73e-08)]_32 chrIV:221958-222305 2.55e-04 27_[+3(1.52e-05)]_6_[+3(7.37e-07)]_\ 31 chrXIII:511470-511976 2.90e-01 100 chrXIII:499567-500421 3.38e-01 100 chrXIV:455330-455960 2.90e-01 100 chrXIII:116055-116883 6.14e-02 100 chrXII:232017-234136 6.17e-01 100 chrXIII:754832-755111 4.64e-01 100 chrXIII:550670-550886 9.06e-01 100 chrII:81322-81493 3.03e-01 100 chrXII:283030-283929 2.79e-03 100 chrVII:185580-185940 4.93e-17 16_[-2(1.42e-14)]_5_[-1(3.99e-10)]_\ 23 chrIV:492181-492591 9.21e-01 100 chrXI:259162-259913 8.83e-03 100 chrVIII:34455-35972 9.76e-01 100 chrIII:57218-58278 6.45e-01 100 chrIV:466111-470778 3.99e-01 100 chrXVI:406168-406530 8.59e-04 68_[-3(1.56e-07)]_14 chrVII:1020462-1020755 5.92e-01 100 chrXV:867279-867909 1.77e-01 100 chrIX:317740-318035 3.13e-01 100 chrXIII:865974-866604 1.04e-01 100 chrXV:1006197-1006827 2.07e-01 100 chrI:78335-79448 1.37e-02 8_[+3(3.17e-05)]_74 chrII:612053-612624 8.49e-01 100 chrXV:113643-113971 1.44e-07 43_[+1(8.81e-11)]_30 chrIII:191204-191834 4.14e-01 100 chrXII:951401-953549 1.80e-01 100 chrXIII:728450-728931 1.57e-01 100 chrIX:25831-26644 4.95e-01 100 chrXIV:657082-660945 2.62e-01 100 chrXII:570472-570812 5.51e-01 100 chrX:120924-121024 1.29e-01 100 chrIV:946230-946585 7.48e-06 1_[+2(1.55e-09)]_70 chrVII:857293-857662 9.12e-06 38_[-1(3.54e-09)]_35 chrXVI:745589-746219 1.20e-01 100 chrV:52249-52907 9.98e-01 100 chrXIII:507317-507682 7.83e-01 100 chrVII:899831-900039 1.22e-02 35_[+3(3.32e-06)]_47 chrXIV:24714-27472 7.02e-01 100 chrII:82189-82679 2.86e-01 100 chrXV:605164-605794 6.20e-01 100 chrXII:930646-931160 3.92e-01 100 chrVII:1048212-1049862 9.03e-01 100 chrXIV:241409-241729 5.56e-02 40_[-3(7.18e-05)]_42 chrVIII:119780-121269 6.79e-01 100 chrXI:326101-327453 5.01e-02 100 chrXII:898316-898946 6.65e-01 100 chrXII:366073-366449 2.72e-01 100 chrV:469258-469642 1.80e-05 55_[+1(1.52e-09)]_18 chrXI:330739-331369 2.90e-01 100 chrXIII:288493-289979 4.45e-01 100 chrIV:479124-479754 4.07e-01 100 chrXII:402157-402667 5.48e-01 100 chrXV:505123-505487 1.44e-02 60_[-3(5.75e-06)]_22 chrVII:344141-344990 7.60e-01 100 chrXIV:185820-186450 4.66e-01 100 chrVII:825157-825568 5.13e-01 100 chrVIII:125920-126314 2.33e-03 31_[-3(6.17e-07)]_51 chrIII:137868-139143 1.88e-01 100 chrVIII:160243-160873 5.11e-01 100 chrVII:738905-739307 2.77e-07 64_[+1(2.25e-11)]_9 chrXII:254115-255177 7.71e-01 100 chrXVI:769077-769519 5.76e-05 28_[-1(1.78e-08)]_45 chrIX:255286-256084 4.89e-01 100 chrXVI:398715-399011 7.22e-01 100 chrV:61332-62148 8.05e-01 100 chrXVI:875535-876165 8.59e-02 26_[+1(8.03e-05)]_47 chrVII:779435-779815 1.09e-08 39_[+1(4.68e-07)]_4_[+2(1.24e-08)]_\ 1 chrVII:439571-439852 7.52e-01 100 chrVII:826460-826864 6.98e-01 100 chrX:349048-349148 1.29e-01 100 chrVII:600897-601332 6.74e-01 100 chrVII:545555-545716 2.15e-01 100 chrV:396213-396573 8.17e-06 32_[-3(5.17e-09)]_50 chrII:88102-88680 9.95e-01 100 chrX:76038-76138 6.14e-01 100 chrIX:69310-69644 7.56e-01 100 chrIX:69282-69601 9.05e-01 100 chrX:702023-702123 1.13e-01 60_[+3(9.56e-05)]_22 chrXVI:649672-649941 6.71e-01 100 chrXIV:505561-506388 1.13e-02 55_[-1(7.02e-05)]_18 chrVII:882595-883146 3.17e-01 100 chrV:441792-442582 5.77e-01 100 chrXII:729297-730181 5.22e-01 100 chrXIV:174225-174556 6.76e-01 100 chrXV:900083-900713 1.19e-01 100 chrXIV:413876-415135 5.51e-04 70_[-1(2.97e-06)]_3 chrXIV:416739-417013 9.86e-01 100 chrXIII:878801-879808 2.82e-01 100 chrXI:334071-334818 9.53e-01 100 chrXIII:372333-372686 2.08e-05 33_[-1(1.52e-09)]_40 chrII:59833-60463 1.09e-01 100 chrXII:636851-640278 2.51e-01 100 chrIV:427523-428736 1.17e-01 100 chrVI:64616-64844 9.31e-01 100 chrXI:616602-617009 8.54e-01 100 chrXV:93419-93800 2.10e-01 100 chrIX:157062-157692 3.18e-01 100 chrXV:678882-679160 1.30e-04 36_[+3(4.25e-08)]_46 chrXV:651029-651305 8.24e-01 100 chrXV:866569-866952 3.21e-04 24_[-3(2.48e-06)]_58 chrXIII:554546-555841 2.27e-01 100 chrXII:499012-499741 5.09e-01 100 chrIX:192039-192669 8.89e-01 100 chrIV:809356-810381 9.08e-01 100 chrXIII:300621-302065 3.61e-01 100 chrXVI:280749-281376 6.81e-02 63_[-3(5.80e-05)]_19 chrIV:355188-356710 8.65e-02 100 chrIV:1162673-1164275 1.78e-01 100 chrXIV:62138-62768 1.29e-01 100 chrII:232768-232986 2.03e-01 100 chrVII:876201-876974 9.93e-01 100 chrXV:1028702-1029124 4.20e-04 41_[+3(4.87e-08)]_41 chrXV:623897-624239 2.71e-01 100 chrXII:975822-976168 7.66e-06 50_[-2(1.18e-09)]_21 chrXVI:151260-151890 9.01e-01 100 chrI:81971-82208 2.46e-04 68_[+3(7.37e-07)]_14 chrXIV:443531-444161 5.27e-01 100 chrXIV:331681-331878 9.98e-01 100 chrXI:618823-619196 3.48e-04 49_[+3(4.70e-07)]_33 chrVIII:451363-453061 9.79e-01 100 chrXV:281951-282368 4.67e-05 53_[+1(7.21e-08)]_20 chrXII:932155-932492 1.53e-04 24_[+3(4.25e-08)]_58 chrII:680385-681835 9.50e-01 100 chrX:390935-391035 7.92e-05 1_[-1(6.24e-09)]_72 chrIX:116493-117123 9.16e-01 100 chrXIII:362892-363254 6.86e-02 100 chrXII:922114-922561 1.42e-04 54_[-3(4.87e-08)]_28 chrV:135298-135654 4.93e-17 11_[-2(1.42e-14)]_5_[-1(3.99e-10)]_\ 28 chrXI:336834-337204 2.16e-01 100 chrIV:45352-46131 7.70e-01 100 chrXVI:749183-749412 8.89e-01 100 chrXIV:302858-303722 1.31e-01 100 chrXII:730026-730362 5.89e-01 100 chrV:282201-283510 5.38e-01 100 chrXVI:753649-754279 3.66e-01 100 chrXV:274483-274876 3.45e-07 42_[+1(2.25e-11)]_31 chrIV:1090022-1090652 5.03e-01 100 chrXII:327743-327943 8.09e-01 100 chrII:420319-420499 8.38e-01 100 chrXII:1018995-1019336 3.38e-01 100 chrII:162724-163428 8.27e-02 66_[-3(7.81e-05)]_16 chrXV:503057-503687 1.48e-01 100 chrVI:162023-162400 1.87e-04 65_[+1(2.91e-08)]_8 chrXV:506178-506808 5.18e-01 100 chrXI:490778-491143 8.08e-04 56_[+1(9.31e-08)]_17 chrXIV:508506-509136 2.50e-01 100 chrVII:930868-931225 2.69e-04 1_[-1(2.91e-08)]_72 chrX:90075-90175 3.75e-03 33_[-3(9.56e-07)]_49 chrXVI:173331-173876 3.83e-01 100 chrIV:1466568-1467917 5.39e-01 100 chrV:78187-79717 2.50e-01 100 chrXIII:222541-222830 9.80e-01 100 chrV:51933-52396 6.90e-01 100 chrXII:579187-579817 7.05e-02 100 chrIV:1175640-1176039 3.69e-13 38_[+1(3.97e-09)]_5_[+2(1.39e-11)]_\ 1 chrXII:1031407-1032037 4.48e-01 100 chrVII:878606-878993 1.67e-02 40_[-1(1.82e-05)]_33 chrXIII:699730-700360 1.77e-01 100 chrVII:24410-25822 1.62e-01 100 chrVII:726451-726752 4.83e-04 49_[-3(5.14e-07)]_33 chrV:67065-68646 5.48e-02 100 chrXIV:307397-308027 6.19e-01 100 chrXIII:892876-893667 3.39e-01 100 chrXIII:159396-160026 8.94e-01 100 chrXII:459448-459978 8.63e-03 53_[+1(1.37e-05)]_20 chrVII:847501-847934 2.00e-01 100 chrXV:253074-253391 8.78e-01 100 chrVII:310496-310895 1.24e-02 37_[-3(5.75e-06)]_45 chrXIII:368593-368941 1.59e-01 100 chrVII:648971-649542 2.18e-03 59_[-1(8.03e-07)]_14 chrX:75358-75458 1.93e-02 25_[+3(6.98e-06)]_57 chrV:308136-308766 2.66e-01 100 chrVII:870167-870797 9.83e-01 100 chrXIII:702476-703532 4.09e-01 100 chrXII:579387-580017 6.26e-01 100 chrXV:28816-29210 7.30e-01 100 chrVII:143134-143764 6.72e-01 100 chrXIII:225365-225734 1.05e-05 42_[-3(7.36e-09)]_40 chrXIV:172401-173031 2.15e-02 2_[+3(6.89e-05)]_80 chrXV:287966-288381 2.15e-03 67_[+1(1.41e-06)]_6 chrXIII:251693-252352 9.83e-01 100 chrXVI:139527-140157 2.98e-01 100 chrIV:1324307-1324937 3.13e-01 100 chrXVI:432724-434360 7.20e-01 100 chrXIV:402461-402642 3.75e-01 100 chrXV:778542-779172 9.93e-01 100 chrIV:527073-527460 6.40e-01 100 chrXVI:303226-304368 7.35e-01 100 chrXII:547109-547673 8.57e-01 100 chrVIII:145960-146317 9.55e-01 100 chrXVI:868660-868892 3.85e-01 100 chrVII:610943-611761 7.82e-01 100 chrIV:472568-473031 6.90e-01 100 chrII:478785-479384 8.95e-01 100 chrIV:929493-930123 6.58e-01 100 chrXIV:63133-63533 1.12e-04 32_[+3(8.93e-09)]_50 chrXVI:810521-810836 7.04e-05 46_[+1(3.51e-08)]_27 chrVII:805100-805316 7.19e-01 100 chrXVI:298269-298512 8.01e-01 100 chrIV:1329357-1329595 2.08e-01 100 chrXIV:102534-102911 4.92e-05 42_[+1(1.32e-08)]_31 chrXI:109493-110052 9.82e-01 100 chrXIII:732048-732374 1.10e-02 58_[+3(4.10e-06)]_24 chrXV:812233-812863 5.88e-01 100 chrVII:366109-366520 2.99e-01 100 chrII:397449-397924 9.69e-01 100 chrXII:545199-545417 3.47e-01 100 chrXII:258063-258624 1.53e-01 100 chrXV:159224-160310 4.42e-01 100 chrXIV:499844-500797 8.68e-01 100 chrII:256511-256999 4.85e-01 100 chrII:46070-46473 1.14e-01 100 chrXV:833282-833912 6.88e-01 100 chrXVI:65138-65336 4.01e-01 100 chrII:557267-557808 6.20e-02 58_[-3(7.18e-05)]_24 chrIV:1489040-1489856 8.69e-01 100 chrXVI:819324-819874 1.96e-08 11_[+2(1.99e-12)]_60 chrXII:1028253-1028560 5.33e-03 54_[+3(5.75e-06)]_28 chrXV:896638-897536 2.90e-01 100 chrXII:837647-839125 5.35e-01 100 chrXVI:249712-250342 6.26e-01 100 chrXV:87770-88118 4.95e-01 100 chrXV:900374-901004 3.47e-01 100 chrXV:1027863-1028617 4.67e-01 100 chrIV:915546-916332 3.51e-01 100 chrXIII:126718-127348 4.08e-01 100 chrIV:117866-118318 9.97e-01 100 chrVII:254178-254546 4.90e-04 12_[-3(4.23e-05)]_2_[+3(6.27e-08)]_\ 50 chrIV:118356-118725 9.82e-02 100 chrX:61176-61276 7.51e-01 100 chrXIII:626502-626953 9.94e-01 100 chrIV:1204632-1205262 6.86e-01 100 chrXI:162330-162730 2.81e-14 19_[-2(1.90e-13)]_4_[-1(1.07e-08)]_\ 21 chrXVI:819324-819882 1.96e-08 7_[+2(1.99e-12)]_64 chrXII:523230-523396 8.10e-01 100 chrVII:787641-787800 5.21e-01 100 chrXII:628192-628656 3.52e-05 7_[+1(3.54e-09)]_66 chrIV:437572-437958 6.01e-06 55_[+1(2.99e-10)]_18 chrVI:65003-65317 3.36e-05 31_[+3(8.43e-06)]_5_[+3(1.91e-08)]_\ 28 chrVIII:115974-116394 1.60e-07 19_[-1(8.81e-11)]_54 chrXVI:689375-689776 2.92e-05 38_[+1(2.20e-09)]_35 chrII:193244-193402 2.39e-01 100 chrXV:29139-30983 8.96e-02 2_[-1(7.51e-05)]_71 chrXV:185744-186374 7.96e-01 100 chrIX:316123-316597 1.32e-01 100 chrXI:488457-488732 9.22e-01 100 chrIV:201176-201806 2.47e-01 100 chrVI:221768-222063 9.61e-05 52_[+3(1.24e-08)]_30 chrX:519493-519593 2.10e-02 100 chrIV:802624-802912 4.94e-10 25_[-2(9.51e-10)]_4_[-1(1.10e-07)]_\ 15 chrVIII:493320-493559 6.22e-01 100 chrII:45010-45335 9.67e-05 44_[-3(1.12e-07)]_1_[+3(1.98e-06)]_\ 19 chrXII:794184-795126 4.59e-01 100 chrXII:791282-791912 2.41e-01 100 chrXIII:293078-293287 9.54e-01 100 chrX:451526-451626 4.44e-01 100 chrXII:448526-448897 4.94e-10 1_[-2(9.51e-10)]_4_[-1(1.10e-07)]_\ 39 chrIV:568699-569133 2.81e-14 14_[+1(1.07e-08)]_4_[+2(1.90e-13)]_\ 26 chrXI:379497-379867 8.56e-06 46_[+1(9.05e-10)]_27 chrX:197160-197260 1.88e-09 11_[-2(4.12e-05)]_5_[-1(1.55e-11)]_\ 28 chrIV:308026-308364 5.28e-03 55_[-3(7.18e-05)]_2_[-3(1.23e-06)]_\ 7 chrXI:519641-521044 7.29e-02 100 chrXVI:718535-719077 6.43e-01 100 chrVII:866213-866546 8.81e-02 100 chrIII:230638-230913 1.44e-01 100 chrV:31660-32290 7.58e-01 100 chrXVI:192139-192769 1.18e-01 100 chrX:422743-422843 1.32e-13 39_[+1(6.24e-09)]_5_[+2(1.39e-11)] chrV:306672-306918 2.49e-01 100 chrVIII:237680-238128 1.99e-09 6_[-2(1.10e-09)]_24_[-1(3.04e-07)]_\ 14 chrVIII:148061-148292 4.06e-01 100 chrII:410140-410770 5.59e-01 100 chrIV:434151-434488 4.38e-14 7_[-2(4.90e-11)]_5_[-1(8.81e-11)]_\ 32 chrXIV:282813-283529 5.50e-01 100 chrIV:1441869-1442233 4.90e-01 100 chrIX:128590-129156 1.71e-01 100 chrVIII:388785-389206 1.50e-04 24_[-1(9.31e-08)]_49 chrV:81357-81987 5.21e-03 13_[-3(2.73e-05)]_69 chrXII:328037-328253 9.36e-01 100 chrV:85669-86804 6.62e-01 100 chrVII:862376-863006 9.33e-02 100 chrXV:411674-412304 9.58e-01 100 chrIV:306554-307184 9.99e-01 100 chrII:409939-410569 9.55e-01 100 chrVII:251750-251985 7.80e-02 100 chrXII:1038996-1039468 9.58e-01 100 chrIV:1075355-1075727 7.39e-03 27_[-1(1.25e-06)]_46 chrXII:899319-899636 2.71e-01 100 chrIV:1060502-1060882 6.39e-01 100 chrVIII:444754-445384 1.02e-01 100 chrXII:818428-818809 1.03e-04 39_[+1(8.57e-07)]_4_[+2(9.41e-05)]_\ 1 chrVII:823302-823690 3.86e-10 34_[+1(1.52e-09)]_6_[+2(3.09e-08)]_\ 4 chrII:713418-713604 8.53e-01 100 chrXI:141420-142383 2.85e-01 100 chrVII:1050810-1051440 9.87e-01 100 chrII:89630-89957 1.54e-04 35_[+3(6.17e-07)]_2_[+3(2.48e-08)]_\ 27 chrXVI:377131-377421 5.39e-01 100 chrIV:1078545-1079175 9.94e-01 100 chrXIII:754443-754790 1.54e-02 3_[+3(4.39e-06)]_79 chrVIII:492804-493434 2.61e-01 100 chrXIV:626192-626822 3.12e-01 100 chrIV:1236586-1238451 7.29e-01 100 chrXIII:761550-762285 5.63e-01 100 chrII:197312-197689 5.22e-07 42_[+1(2.25e-11)]_31 chrXIV:403423-403737 9.80e-01 100 chrIV:768256-768886 3.59e-01 100 chrXIV:705520-705775 1.66e-01 100 chrVII:364260-364543 4.33e-01 100 chrXV:729330-729815 8.87e-01 100 chrXII:545250-545880 4.11e-01 100 chrXII:919535-919776 6.16e-02 16_[+1(6.34e-05)]_57 chrXII:350021-350457 2.24e-01 100 chrXV:594206-594621 5.03e-05 3_[-2(8.98e-05)]_4_[-1(3.52e-07)]_\ 37 chrV:299202-301955 2.65e-01 100 chrVII:724556-725186 7.04e-01 100 chrXVI:193679-194599 3.15e-01 100 chrIV:384434-385064 2.28e-01 100 chrVII:700433-701242 6.81e-01 100 chrXII:280893-281523 6.76e-01 100 chrXV:444745-446183 4.63e-01 100 chrX:204566-204666 2.58e-04 27_[+1(1.15e-05)]_4_[+2(6.63e-05)]_\ 13 chrIV:491710-492340 3.28e-02 100 chrXVI:520164-520522 3.66e-01 100 chrV:74915-75545 4.42e-02 100 chrXVI:692852-693482 5.08e-01 100 chrXIV:65875-66505 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chrV:475864-476494 5.49e-01 100 chrV:329619-330249 2.85e-01 100 chrII:266211-266651 7.68e-07 27_[+2(4.90e-11)]_44 chrVII:806092-807053 3.00e-01 100 chrX:517741-517841 1.23e-02 18_[-1(2.81e-06)]_55 chrXII:241651-242009 8.37e-05 23_[-3(5.17e-09)]_59 chrXV:612760-613390 9.11e-01 100 chrII:234840-235647 8.34e-01 100 chrVII:468215-468845 1.76e-01 100 chrIV:392409-393039 9.58e-01 100 chrVII:600129-600997 1.99e-01 100 chrXIV:502134-502764 1.57e-01 100 chrVII:541641-542099 4.25e-06 59_[+2(3.55e-09)]_12 chrXII:962857-963233 2.28e-04 34_[-1(6.61e-08)]_39 chrII:413815-414428 9.52e-02 100 chrV:545798-546428 3.72e-01 100 chrXIII:290610-290974 3.02e-01 100 chrIV:601068-602302 8.47e-01 100 chrVII:122109-122483 4.93e-17 21_[+1(3.99e-10)]_5_[+2(1.42e-14)]_\ 18 chrV:435650-435977 4.93e-17 1_[-2(1.42e-14)]_5_[-1(3.99e-10)]_\ 38 chrIV:1150703-1151142 1.95e-07 43_[-1(1.06e-11)]_30 chrIV:655975-656574 7.88e-01 100 chrXIV:252193-252823 2.26e-01 100 chrVIII:382922-383316 2.20e-04 29_[+3(1.40e-07)]_53 chrXV:650070-650261 3.96e-01 100 chrXII:855954-856638 6.83e-01 100 chrXVI:188675-188881 7.86e-02 100 chrXIV:108309-108939 3.28e-01 100 chrIV:117166-117576 8.58e-03 61_[-3(2.30e-06)]_21 chrXVI:352840-353470 8.94e-02 100 chrVII:438610-438890 1.06e-03 32_[+3(3.56e-06)]_5_[+3(1.74e-07)]_\ 27 chrV:487208-487552 2.81e-06 13_[-2(3.55e-09)]_58 chrVII:534800-535230 1.25e-04 36_[+3(3.73e-08)]_46 chrIV:1352324-1352710 4.93e-17 11_[-2(1.42e-14)]_5_[-1(3.99e-10)]_\ 28 chrII:405659-406120 2.81e-14 37_[+1(1.07e-08)]_4_[+2(1.90e-13)]_\ 3 chrXII:734632-735003 1.46e-15 33_[+1(4.54e-11)]_6_[+2(1.99e-12)]_\ 5 chrXIII:146691-147304 1.15e-01 100 chrIII:90702-91071 3.01e-05 21_[+1(3.54e-09)]_52 chrXI:112981-113826 2.95e-01 100 chrIV:1305441-1305816 3.52e-06 50_[+1(2.99e-10)]_23 chrXVI:649535-649743 6.16e-01 100 chrXIV:215815-216125 8.84e-01 100 chrIV:490497-491127 1.67e-01 100 chrIV:720573-721522 3.87e-01 100 chrVII:648971-649432 1.91e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************