Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.027166
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.06188
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.077057
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.025844
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.063495
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background
Finished invoke:
  name: bg  status: 0  time: 0.022253
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 930.815068
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 74.889648
Invoking:
  centrimo -seqlen 364 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.230597
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.488298
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background -primary DTGGCCVAGTKGKTWARGSG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.435306
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background -primary TCGAACCSVKGAYCTYMYGRTTAHWAGKS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.350675
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background -primary WRATGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.372259
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.241455
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.225138
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background -primary SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.36121
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.255018
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background -primary ACACSCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.249614
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background -primary GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.21849
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background -primary CACGRTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.248391
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background -primary AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.244933
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background -primary CCAACWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.222459
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background -primary RCCGATGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.209998
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background -primary AAAAAAAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.228607
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background --motif DTGGCCVAGTKGKTWARGSG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.215945
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background --motif TCGAACCSVKGAYCTYMYGRTTAHWAGKS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.422625
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background --motif WRATGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.197673
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.106042
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.109426
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background --motif SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.084516
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.143336
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background --motif ACACSCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.107057
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background --motif GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.121632
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background --motif CACGRTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.100865
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background --motif AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.10084
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background --motif CCAACWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.107992
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background --motif RCCGATGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.115806
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/background --motif AAAAAAAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/YJM789--SRB8.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.121402
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SRB8/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.208469
Done