******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SOK2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:976026-976819 1.0000 100 chrXIII:352146-352431 1.0000 100 chrXII:341087-341592 1.0000 100 chrVII:774182-774595 1.0000 100 chrVIII:50655-50898 1.0000 100 chrXII:459516-460381 1.0000 100 chrXV:989036-989628 1.0000 100 chrXII:426926-427457 1.0000 100 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chrIV:550874-551161 1.0000 100 chrIV:221257-221667 1.0000 100 chrI:141932-142342 1.0000 100 chrXII:645764-646334 1.0000 100 chrXIII:298311-298845 1.0000 100 chrXVI:575158-575418 1.0000 100 chrXIV:502116-502526 1.0000 100 chrXVI:810559-810818 1.0000 100 chrXIV:631772-632053 1.0000 100 chrVII:730985-731310 1.0000 100 chrXII:248191-248601 1.0000 100 chrII:140499-140732 1.0000 100 chrVII:736168-736504 1.0000 100 chrIX:255247-255657 1.0000 100 chrXII:48730-49089 1.0000 100 chrXVI:581917-582234 1.0000 100 chrXII:388476-388702 1.0000 100 chrXV:80582-80992 1.0000 100 chrXVI:731959-732278 1.0000 100 chrXVI:585743-586982 1.0000 100 chrVII:438609-438879 1.0000 100 chrIV:722404-722814 1.0000 100 chrX:73423-73523 1.0000 100 chrIV:1492355-1492765 1.0000 100 chrXII:898828-899783 1.0000 100 chrXV:216283-216668 1.0000 100 chrI:68316-68610 1.0000 100 chrVII:310538-310865 1.0000 100 chrXII:568011-568378 1.0000 100 chrXII:737713-738092 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SOK2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SOK2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SOK2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 544 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 54400 N= 544 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.287 C 0.213 G 0.213 T 0.287 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SOK2/background): A 0.298 C 0.202 G 0.202 T 0.298 ******************************************************************************** ******************************************************************************** MOTIF SSCTYWACCVACTVGGCCAMV MEME-1 width = 21 sites = 65 llr = 1100 E-value = 7.8e-195 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCTYWACCVACTVGGCCAMV MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::11:373:4a::232::a53 pos.-specific C 63924:17a3:9:22:a8:32 probability G 46:2::1::2:::468::::4 matrix T :::5671::1:1a1:::2:21 bits 2.3 * * 2.1 * * 1.8 * * ** * * 1.6 * * *** ** * Relative 1.4 * * *** **** Entropy 1.2 *** ** *** **** (24.4 bits) 0.9 *** ** ** *** **** 0.7 *** ** ** *** ***** 0.5 *** ***** *** ****** 0.2 ********************* 0.0 --------------------- Multilevel CGCTTTACCAACTGGGCCAAG consensus GC CCA A C CA T CA sequence G A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWACCVACTVGGCCAMV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXII:1051939-1052268 + 66 6.07e-11 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCATGAA chrXII:734619-735012 - 42 6.07e-11 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCAAACT chrXIV:569800-569985 + 73 6.07e-11 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCAC chrXVI:819379-819710 - 40 6.07e-11 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCATTCT chrVII:738966-739295 - 47 6.07e-11 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCTATTT chrIV:1305482-1305766 - 61 1.06e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCTTAAT chrIV:437614-437930 - 55 1.06e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCTTACT chrII:226948-227253 - 30 1.06e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCTCGTT chrVIII:132960-133257 + 24 1.06e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCACTTA chrX:523905-524005 + 52 1.06e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCTTTAA chrXII:167768-168216 + 58 1.06e-10 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCATATG chrXII:214726-215112 + 61 4.35e-10 GCAAGGGAAG CGCGCTACCAACTGCGCCATG TGCCCTAAAA chrIV:359441-359753 - 35 9.11e-10 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrXII:875173-875652 - 19 9.11e-10 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrVII:700819-701198 + 65 9.11e-10 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrXV:438488-438837 - 36 9.11e-10 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrVII:115332-115640 - 57 9.11e-10 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrXI:517835-518126 - 63 1.20e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCATAGT chrXII:784153-784618 - 24 1.20e-09 TAGCAGGCAT CGCCTTAACCACTCGGCCACT GGGACGGTTG chrXII:656814-657182 + 33 1.20e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCAATTT chrX:197211-197311 + 43 1.20e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCTAATA chrVII:774182-774595 - 16 1.20e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCAATTA chrII:266247-266551 - 34 1.37e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCAGTTT chrXIV:104668-105030 - 11 1.37e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCTCAGA chrIX:325611-325910 - 43 1.37e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCTCGTA chrXV:113672-113939 - 52 1.37e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCTAAAT chrIII:227786-228153 - 28 1.37e-09 TCGAGTCTCT CGCCTTAACCACTCGGCCATA GTGCCATTTC chrVIII:116011-116350 + 24 1.37e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCTCTAT chrIII:295381-295636 - 31 1.37e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCTTAAT chrXII:592389-592759 + 70 1.56e-09 TAAATCTGAC GCCTTAAACCACTCGGCCAAA CTCCCATTGT chrXII:731960-732315 - 8 1.56e-09 TAAATCTGAC GCCTTAAACCACTCGGCCAAA CTCCCAT chrVII:730985-731310 - 45 3.28e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCTTTTT chrXVI:810559-810818 - 43 3.28e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCGCAAA chrVI:137384-137687 + 49 3.28e-09 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCAGTCA chrIV:1095254-1095617 + 51 5.17e-09 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAG TCCGCTAACA chrXVI:581917-582234 - 42 7.15e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTCTTT chrVII:122127-122490 - 16 7.15e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTAATT chrIII:151225-151495 + 21 7.15e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTCTTT chrVII:185596-185924 + 51 7.15e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTATTT chrV:435658-435936 + 52 7.15e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTCTTA chrIV:1352376-1352669 + 41 7.15e-09 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTATTT chrII:36259-36548 - 50 8.79e-09 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTACA chrVIII:237749-238095 + 42 8.79e-09 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTACT chrXIII:352146-352431 - 47 8.79e-09 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTATA chrXII:962837-963287 + 18 1.07e-08 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCGTCGA chrIV:519637-519896 - 32 1.07e-08 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCGTAAA chrX:378200-378300 - 70 3.46e-08 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCTATTA chrVII:412218-412514 + 26 3.46e-08 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCAGTTT chrXI:308064-308367 + 27 3.46e-08 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCACTTA chrV:469302-469597 - 63 3.46e-08 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCAATTA chrVII:823352-823636 - 43 3.46e-08 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCACTCT chrV:438570-438834 - 53 3.46e-08 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCTAATT chrX:422779-422879 - 59 7.47e-08 ATGAGACTGA CGCTCTTCCTACTGAGCTACT GAAGCATACA chrX:390951-391051 + 19 7.47e-08 ATGAGACTGA CGCTCTTCCTACTGAGCTACT GAAGCACTAT chrXV:976357-976568 - 14 7.47e-08 ATGAGACTGA CGCTCTTCCTACTGAGCTACT GAAGCGCACA chrIV:1175677-1175980 - 56 7.47e-08 ATGAGACTGA CGCTCTTCCTACTGAGCTACT GAAGCTTTGT chrIV:884227-884566 - 20 9.89e-08 ATAAGCACGA AGCTCTAACCACTGAGCTACA CGAGCATTTT chrVII:205366-205761 - 13 1.13e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrVII:700512-700874 - 37 1.13e-07 TCGACCTGAC GCCTTAGACCACTCGGCCAGA GTACCAATTC chrXII:628182-628672 - 11 1.13e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrXI:326988-327364 - 20 2.38e-07 AGTTGTCTTA CACTCTGACCACTGTGCCAAG AAGTTGTTGC chrIII:142622-142937 + 17 7.20e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTAGTA chrXVI:860213-860545 - 55 7.20e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTTGTT chrIV:992686-992988 - 50 7.20e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTCACA chrXIV:568003-568312 - 13 1.49e-06 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCGATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWACCVACTVGGCCAMV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:1051939-1052268 6.1e-11 65_[+1]_14 chrXII:734619-735012 6.1e-11 41_[-1]_38 chrXIV:569800-569985 6.1e-11 72_[+1]_7 chrXVI:819379-819710 6.1e-11 39_[-1]_40 chrVII:738966-739295 6.1e-11 46_[-1]_33 chrIV:1305482-1305766 1.1e-10 60_[-1]_19 chrIV:437614-437930 1.1e-10 54_[-1]_25 chrII:226948-227253 1.1e-10 29_[-1]_50 chrVIII:132960-133257 1.1e-10 23_[+1]_56 chrX:523905-524005 1.1e-10 51_[+1]_28 chrXII:167768-168216 1.1e-10 57_[+1]_22 chrXII:214726-215112 4.4e-10 60_[+1]_19 chrIV:359441-359753 9.1e-10 34_[-1]_45 chrXII:875173-875652 9.1e-10 18_[-1]_61 chrVII:700819-701198 9.1e-10 64_[+1]_15 chrXV:438488-438837 9.1e-10 35_[-1]_44 chrVII:115332-115640 9.1e-10 56_[-1]_23 chrXI:517835-518126 1.2e-09 62_[-1]_17 chrXII:784153-784618 1.2e-09 23_[-1]_56 chrXII:656814-657182 1.2e-09 32_[+1]_47 chrX:197211-197311 1.2e-09 42_[+1]_37 chrVII:774182-774595 1.2e-09 15_[-1]_64 chrII:266247-266551 1.4e-09 33_[-1]_46 chrXIV:104668-105030 1.4e-09 10_[-1]_69 chrIX:325611-325910 1.4e-09 42_[-1]_37 chrXV:113672-113939 1.4e-09 51_[-1]_28 chrIII:227786-228153 1.4e-09 27_[-1]_52 chrVIII:116011-116350 1.4e-09 23_[+1]_56 chrIII:295381-295636 1.4e-09 30_[-1]_49 chrXII:592389-592759 1.6e-09 69_[+1]_10 chrXII:731960-732315 1.6e-09 7_[-1]_72 chrVII:730985-731310 3.3e-09 44_[-1]_35 chrXVI:810559-810818 3.3e-09 42_[-1]_37 chrVI:137384-137687 3.3e-09 48_[+1]_31 chrIV:1095254-1095617 5.2e-09 50_[+1]_29 chrXVI:581917-582234 7.2e-09 41_[-1]_38 chrVII:122127-122490 7.2e-09 15_[-1]_64 chrIII:151225-151495 7.2e-09 20_[+1]_59 chrVII:185596-185924 7.2e-09 50_[+1]_29 chrV:435658-435936 7.2e-09 51_[+1]_28 chrIV:1352376-1352669 7.2e-09 40_[+1]_39 chrII:36259-36548 8.8e-09 49_[-1]_30 chrVIII:237749-238095 8.8e-09 41_[+1]_38 chrXIII:352146-352431 8.8e-09 46_[-1]_33 chrXII:962837-963287 1.1e-08 17_[+1]_62 chrIV:519637-519896 1.1e-08 31_[-1]_48 chrX:378200-378300 3.5e-08 69_[-1]_10 chrVII:412218-412514 3.5e-08 25_[+1]_54 chrXI:308064-308367 3.5e-08 26_[+1]_53 chrV:469302-469597 3.5e-08 62_[-1]_17 chrVII:823352-823636 3.5e-08 42_[-1]_37 chrV:438570-438834 3.5e-08 52_[-1]_27 chrX:422779-422879 7.5e-08 58_[-1]_21 chrX:390951-391051 7.5e-08 18_[+1]_61 chrXV:976357-976568 7.5e-08 13_[-1]_66 chrIV:1175677-1175980 7.5e-08 55_[-1]_24 chrIV:884227-884566 9.9e-08 19_[-1]_60 chrVII:205366-205761 1.1e-07 12_[-1]_67 chrVII:700512-700874 1.1e-07 36_[-1]_43 chrXII:628182-628672 1.1e-07 10_[-1]_69 chrXI:326988-327364 2.4e-07 19_[-1]_60 chrIII:142622-142937 7.2e-07 16_[+1]_63 chrXVI:860213-860545 7.2e-07 54_[-1]_25 chrIV:992686-992988 7.2e-07 49_[-1]_30 chrXIV:568003-568312 1.5e-06 12_[-1]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWACCVACTVGGCCAMV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCTYWACCVACTVGGCCAMV width=21 seqs=65 chrXII:1051939-1052268 ( 66) GCCTTAACCAACTGGGCCAAG 1 chrXII:734619-735012 ( 42) GCCTTAACCAACTGGGCCAAG 1 chrXIV:569800-569985 ( 73) GCCTTAACCAACTGGGCCAAG 1 chrXVI:819379-819710 ( 40) GCCTTAACCAACTGGGCCAAG 1 chrVII:738966-739295 ( 47) GCCTTAACCAACTGGGCCAAG 1 chrIV:1305482-1305766 ( 61) CGCCTTAACCACTCGGCCAAG 1 chrIV:437614-437930 ( 55) CGCCTTAACCACTCGGCCAAG 1 chrII:226948-227253 ( 30) CGCCTTAACCACTCGGCCAAG 1 chrVIII:132960-133257 ( 24) CGCCTTAACCACTCGGCCAAG 1 chrX:523905-524005 ( 52) CGCCTTAACCACTCGGCCAAG 1 chrXII:167768-168216 ( 58) CGCCTTAACCACTCGGCCAAG 1 chrXII:214726-215112 ( 61) CGCGCTACCAACTGCGCCATG 1 chrIV:359441-359753 ( 35) CGCTCTACCAACTGAGCTAAC 1 chrXII:875173-875652 ( 19) CGCTCTACCAACTGAGCTAAC 1 chrVII:700819-701198 ( 65) CGCTCTACCAACTGAGCTAAC 1 chrXV:438488-438837 ( 36) CGCTCTACCAACTGAGCTAAC 1 chrVII:115332-115640 ( 57) CGCTCTACCAACTGAGCTAAC 1 chrXI:517835-518126 ( 63) CGCGCTACCGACTACGCCACA 1 chrXII:784153-784618 ( 24) CGCCTTAACCACTCGGCCACT 1 chrXII:656814-657182 ( 33) CGCGCTACCGACTACGCCACA 1 chrX:197211-197311 ( 43) CGCGCTACCGACTACGCCACA 1 chrVII:774182-774595 ( 16) CGCGCTACCGACTACGCCACA 1 chrII:266247-266551 ( 34) CGCCTTACCAACTTGGCCATA 1 chrXIV:104668-105030 ( 11) CGCCTTACCAACTTGGCCATA 1 chrIX:325611-325910 ( 43) CGCCTTACCAACTTGGCCATA 1 chrXV:113672-113939 ( 52) CGCCTTACCAACTTGGCCATA 1 chrIII:227786-228153 ( 28) CGCCTTAACCACTCGGCCATA 1 chrVIII:116011-116350 ( 24) CGCCTTACCAACTTGGCCATA 1 chrIII:295381-295636 ( 31) CGCCTTACCAACTTGGCCATA 1 chrXII:592389-592759 ( 70) GCCTTAAACCACTCGGCCAAA 1 chrXII:731960-732315 ( 8) GCCTTAAACCACTCGGCCAAA 1 chrVII:730985-731310 ( 45) GCCTTAACCAACTTGGCCATG 1 chrXVI:810559-810818 ( 43) GCCTTAACCAACTTGGCCATG 1 chrVI:137384-137687 ( 49) GCCTTAACCAACTTGGCCATG 1 chrIV:1095254-1095617 ( 51) CGCTCTCCCAACTGAGCTAAG 1 chrXVI:581917-582234 ( 42) CGCGCTACCGATTGCGCCAAC 1 chrVII:122127-122490 ( 16) CGCGCTACCGATTGCGCCAAC 1 chrIII:151225-151495 ( 21) CGCGCTACCGATTGCGCCAAC 1 chrVII:185596-185924 ( 51) CGCGCTACCGATTGCGCCAAC 1 chrV:435658-435936 ( 52) CGCGCTACCGATTGCGCCAAC 1 chrIV:1352376-1352669 ( 41) CGCGCTACCGATTGCGCCAAC 1 chrII:36259-36548 ( 50) CGCTCTCCCAACTGAGCTAAA 1 chrVIII:237749-238095 ( 42) CGCTCTCCCAACTGAGCTAAA 1 chrXIII:352146-352431 ( 47) CGCTCTCCCAACTGAGCTAAA 1 chrXII:962837-963287 ( 18) GCCTTAGACCACTCGGCCAAC 1 chrIV:519637-519896 ( 32) GCCTTAGACCACTCGGCCAAC 1 chrX:378200-378300 ( 70) GCCATAACCGACTAGACCACG 1 chrVII:412218-412514 ( 26) GCCATAACCGACTAGACCACG 1 chrXI:308064-308367 ( 27) GCCATAACCGACTAGACCACG 1 chrV:469302-469597 ( 63) GCCATAACCGACTAGACCACG 1 chrVII:823352-823636 ( 43) GCCATAACCGACTAGACCACG 1 chrV:438570-438834 ( 53) GCCATAACCGACTAGACCACG 1 chrX:422779-422879 ( 59) CGCTCTTCCTACTGAGCTACT 1 chrX:390951-391051 ( 19) CGCTCTTCCTACTGAGCTACT 1 chrXV:976357-976568 ( 14) CGCTCTTCCTACTGAGCTACT 1 chrIV:1175677-1175980 ( 56) CGCTCTTCCTACTGAGCTACT 1 chrIV:884227-884566 ( 20) AGCTCTAACCACTGAGCTACA 1 chrVII:205366-205761 ( 13) GCCTTAGACCGCTCGGCCAAA 1 chrVII:700512-700874 ( 37) GCCTTAGACCACTCGGCCAGA 1 chrXII:628182-628672 ( 11) GCCTTAGACCGCTCGGCCAAA 1 chrXI:326988-327364 ( 20) CACTCTGACCACTGTGCCAAG 1 chrIII:142622-142937 ( 17) GGATTTTACCACTAAACCACT 1 chrXVI:860213-860545 ( 55) GGATTTTACCACTAAACCACT 1 chrIV:992686-992988 ( 50) GGATTTTACCACTAAACCACT 1 chrXIV:568003-568312 ( 13) GAATCATACCACTAGACCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWACCVACTVGGCCAMV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 43520 bayes= 10.7192 E= 7.8e-195 -427 157 93 -1267 -327 68 168 -1267 -227 222 -1267 -1267 -169 9 -26 81 -1267 104 -1267 97 18 -1267 -1267 115 128 -172 -113 -127 12 174 -1267 -1267 -1267 231 -1267 -1267 31 68 28 -227 170 -1267 -271 -1267 -1267 217 -1267 -169 -1267 -1267 -1267 175 -47 19 104 -111 -19 -26 145 -427 -95 -1267 207 -1267 -1267 231 -1267 -1267 -1267 196 -1267 -47 175 -1267 -1267 -1267 77 61 -371 -82 12 -2 81 -127 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWACCVACTVGGCCAMV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 65 E= 7.8e-195 0.015385 0.600000 0.384615 0.000000 0.030769 0.323077 0.646154 0.000000 0.061538 0.938462 0.000000 0.000000 0.092308 0.215385 0.169231 0.523077 0.000000 0.415385 0.000000 0.584615 0.338462 0.000000 0.000000 0.661538 0.723077 0.061538 0.092308 0.123077 0.323077 0.676923 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.369231 0.323077 0.246154 0.061538 0.969231 0.000000 0.030769 0.000000 0.000000 0.907692 0.000000 0.092308 0.000000 0.000000 0.000000 1.000000 0.215385 0.230769 0.415385 0.138462 0.261538 0.169231 0.553846 0.015385 0.153846 0.000000 0.846154 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.784615 0.000000 0.215385 1.000000 0.000000 0.000000 0.000000 0.507692 0.307692 0.015385 0.169231 0.323077 0.200000 0.353846 0.123077 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCTYWACCVACTVGGCCAMV MEME-1 regular expression -------------------------------------------------------------------------------- [CG][GC]C[TC][TC][TA]A[CA]C[ACG]ACT[GCA][GA]GC[CT]A[AC][GAC] -------------------------------------------------------------------------------- Time 288.31 secs. ******************************************************************************** ******************************************************************************** MOTIF KTAAYSRDRRGRWYMBGGGTTCGABYCCC MEME-2 width = 29 sites = 41 llr = 870 E-value = 3.1e-158 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTAAYSRDRRGRWYMBGGGTTCGABYCCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:67::3336243:5:::::::3a1:::1 pos.-specific C 122:461:11::17323::::a::24a87 probability G 4:1224445376::147aa:::7:2:::3 matrix T 37:14:231:1:63:31::aa:::46:2: bits 2.3 * * * 2.1 ** * * 1.8 ***** * * 1.6 ***** * ** Relative 1.4 * ******* ** Entropy 1.2 * * * ******** *** (30.6 bits) 0.9 * * ** * ******** **** 0.7 * * * *** * ******** **** 0.5 ***** **************** **** 0.2 ***************************** 0.0 ----------------------------- Multilevel GTAACCGGGAGGTCAGGGGTTCGATTCCC consensus TCC TGAAAGAAATCTC A CC G sequence T C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTAAYSRDRRGRWYMBGGGTTCGABYCCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrV:487246-487508 - 14 8.04e-13 ACATCACGCT TTCACCGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrVII:328440-328868 + 12 8.04e-13 ACATCACGCT TTCACCGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrVII:541692-542047 + 64 8.04e-13 ACATCACGCT TTCACCGTGGAGACCGGGGTTCGACTCCC CGTATCGG chrXVI:210070-210422 - 6 8.04e-13 ACATCACGCT TTCACCGTGGAGACCGGGGTTCGACTCCC CGTAT chrXVI:581917-582234 + 71 9.46e-13 CGTATGACTC TTAATCATAAGGTTAGGGGTTCGAGCCCC C chrVII:122127-122490 + 45 9.46e-13 CGTATGACTC TTAATCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVII:185596-185924 - 14 9.46e-13 CGTATGACTC TTAATCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrV:435658-435936 - 15 9.46e-13 CGTATGACTC TTAATCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIV:1352376-1352669 - 4 9.46e-13 CGTATGACTC TTAATCATAAGGTTAGGGGTTCGAGCCCC CTA chrXII:214726-215112 - 24 4.85e-12 CGCTTCCCTT GCAAGGAAGAGGTCATCGGTTCGATTCCG GTTGCGTCCA chrXI:162359-162683 - 26 4.85e-12 CGTCTGACTT CTAATCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrV:138510-138897 + 46 4.85e-12 CGTCTGACTT CTAATCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrX:355210-355310 + 55 4.85e-12 CGTCTGACTT CTAATCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrX:374314-374414 - 48 4.85e-12 CGTCTGACTT CTAATCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrXII:1051939-1052268 - 28 5.57e-12 CACCGTGCTA ATAACGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrXII:734619-735012 + 72 5.57e-12 CACCGTGCTA ATAACGCGGGGATCAGCGGTTCGATCCCG chrXIV:569800-569985 - 35 5.57e-12 CACCGTGCTA ATAACGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrXVI:819379-819710 + 70 5.57e-12 CACCGTGCTA ATAACGCGGGGATCAGCGGTTCGATCCCG CT chrII:266247-266551 + 63 4.03e-11 CGCCACACTA GTAATGTGGAGATCATCGGTTCAAATCCG ATTGGAAGC chrXIV:104668-105030 + 40 4.03e-11 CGCCACACTA GTAATGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIX:325611-325910 + 72 4.03e-11 CGCCACACTA GTAATGTGGAGATCATCGGTTCAAATCCG chrIII:295381-295636 + 60 4.03e-11 CGCCACACTA GTAATGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrXIV:568003-568312 + 72 4.50e-11 GGAAGACAAA GCATGCGAGAGGCCCTGGGTTCAATTCCC chrXV:980591-980868 + 70 4.50e-11 GAGGAACAAA GCATGCGAGAGGCCCTGGGTTCAATTCCC AG chrXII:92461-92749 + 57 4.50e-11 GGAAGACAAA GCATGCGAGAGGCCCTGGGTTCAATTCCC AGCTCGCCCC chrXIV:96120-96467 - 8 1.72e-10 ATCCCACCCT TCCAAGGTGGGGACACGGGTTCGATTCTC GTACCGC chrXV:110863-111121 - 30 1.72e-10 ATCCCACCCT TCCAAGGTGGGGACACGGGTTCGATTCTC GTACCGCTCA chrX:197211-197311 - 6 1.89e-10 CGCTCCCTTA GCATGGGAGAGGTCTCCGGTTCGATTCCG GACTC chrVII:774182-774595 + 45 1.89e-10 CGCTCCCTTA GCATGGGAGAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrXII:875173-875652 + 71 2.74e-10 CTTAAGCAAG GATACCGAAATGTCAGGGGTTCGAGCCCC C chrVII:700819-701198 - 5 2.74e-10 CTTAAGCAAG GATACCGAAATGTCAGGGGTTCGAGCCCC CTAT chrX:538432-538532 + 68 2.74e-10 CGTCTCCCTC CTAAGGAGAAGACTGCGGGTTCGAGTCCC GTAC chrX:204592-204692 + 66 1.11e-09 ATGGGCGCTT GTCGCGTGCCAGATCGGGGTTCAATTCCC CGTCGC chrX:541416-541516 + 46 1.11e-09 ATGGGCGCTT GTCGCGTGCCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrXII:426926-427457 + 24 1.11e-09 ATGGGCGCTT GTCGCGTGCCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrVI:137384-137687 - 11 6.78e-09 CGTGCGACTG TTAATCGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXII:818468-818796 + 60 8.87e-09 ATGCATTCTT CCGGTGGCTGTGATCCGGGTTCGAGTCCC GGGAGGAGCT chrXV:976357-976568 + 43 1.32e-08 CGTCAGTCTC ATAATCTGAAGGTCGAGAGTTCGAACCTC CCCTGGAGCA chrV:434344-434754 - 52 2.00e-08 ACACATCGTT GTGGCCGATGAAACCCTGGTTCGATTCTA GGAGATGGCA chrXI:313317-313575 - 15 2.00e-08 ACACATCGTT GTGGCCGATGAAACCCTGGTTCGATTCTA GGAGATGGCA chrVII:110490-110809 - 36 2.00e-08 ACACATCGTT GTGGCCGATGAAACCCTGGTTCGATTCTA GGAGATGGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTAAYSRDRRGRWYMBGGGTTCGABYCCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:487246-487508 8e-13 13_[-2]_58 chrVII:328440-328868 8e-13 11_[+2]_60 chrVII:541692-542047 8e-13 63_[+2]_8 chrXVI:210070-210422 8e-13 5_[-2]_66 chrXVI:581917-582234 9.5e-13 70_[+2]_1 chrVII:122127-122490 9.5e-13 44_[+2]_27 chrVII:185596-185924 9.5e-13 13_[-2]_58 chrV:435658-435936 9.5e-13 14_[-2]_57 chrIV:1352376-1352669 9.5e-13 3_[-2]_68 chrXII:214726-215112 4.9e-12 23_[-2]_48 chrXI:162359-162683 4.9e-12 25_[-2]_46 chrV:138510-138897 4.9e-12 45_[+2]_26 chrX:355210-355310 4.9e-12 54_[+2]_17 chrX:374314-374414 4.9e-12 47_[-2]_24 chrXII:1051939-1052268 5.6e-12 27_[-2]_44 chrXII:734619-735012 5.6e-12 71_[+2] chrXIV:569800-569985 5.6e-12 34_[-2]_37 chrXVI:819379-819710 5.6e-12 69_[+2]_2 chrII:266247-266551 4e-11 62_[+2]_9 chrXIV:104668-105030 4e-11 39_[+2]_32 chrIX:325611-325910 4e-11 71_[+2] chrIII:295381-295636 4e-11 59_[+2]_12 chrXIV:568003-568312 4.5e-11 71_[+2] chrXV:980591-980868 4.5e-11 69_[+2]_2 chrXII:92461-92749 4.5e-11 56_[+2]_15 chrXIV:96120-96467 1.7e-10 7_[-2]_64 chrXV:110863-111121 1.7e-10 29_[-2]_42 chrX:197211-197311 1.9e-10 5_[-2]_66 chrVII:774182-774595 1.9e-10 44_[+2]_27 chrXII:875173-875652 2.7e-10 70_[+2]_1 chrVII:700819-701198 2.7e-10 4_[-2]_67 chrX:538432-538532 2.7e-10 67_[+2]_4 chrX:204592-204692 1.1e-09 65_[+2]_6 chrX:541416-541516 1.1e-09 45_[+2]_26 chrXII:426926-427457 1.1e-09 23_[+2]_48 chrVI:137384-137687 6.8e-09 10_[-2]_61 chrXII:818468-818796 8.9e-09 59_[+2]_12 chrXV:976357-976568 1.3e-08 42_[+2]_29 chrV:434344-434754 2e-08 51_[-2]_20 chrXI:313317-313575 2e-08 14_[-2]_57 chrVII:110490-110809 2e-08 35_[-2]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTAAYSRDRRGRWYMBGGGTTCGABYCCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTAAYSRDRRGRWYMBGGGTTCGABYCCC width=29 seqs=41 chrV:487246-487508 ( 14) TTCACCGTGGAGACCGGGGTTCGACTCCC 1 chrVII:328440-328868 ( 12) TTCACCGTGGAGACCGGGGTTCGACTCCC 1 chrVII:541692-542047 ( 64) TTCACCGTGGAGACCGGGGTTCGACTCCC 1 chrXVI:210070-210422 ( 6) TTCACCGTGGAGACCGGGGTTCGACTCCC 1 chrXVI:581917-582234 ( 71) TTAATCATAAGGTTAGGGGTTCGAGCCCC 1 chrVII:122127-122490 ( 45) TTAATCATAAGGTTAGGGGTTCGAGCCCC 1 chrVII:185596-185924 ( 14) TTAATCATAAGGTTAGGGGTTCGAGCCCC 1 chrV:435658-435936 ( 15) TTAATCATAAGGTTAGGGGTTCGAGCCCC 1 chrIV:1352376-1352669 ( 4) TTAATCATAAGGTTAGGGGTTCGAGCCCC 1 chrXII:214726-215112 ( 24) GCAAGGAAGAGGTCATCGGTTCGATTCCG 1 chrXI:162359-162683 ( 26) CTAATCAGAAGATTATGGGTTCGACCCCC 1 chrV:138510-138897 ( 46) CTAATCAGAAGATTATGGGTTCGACCCCC 1 chrX:355210-355310 ( 55) CTAATCAGAAGATTATGGGTTCGACCCCC 1 chrX:374314-374414 ( 48) CTAATCAGAAGATTATGGGTTCGACCCCC 1 chrXII:1051939-1052268 ( 28) ATAACGCGGGGATCAGCGGTTCGATCCCG 1 chrXII:734619-735012 ( 72) ATAACGCGGGGATCAGCGGTTCGATCCCG 1 chrXIV:569800-569985 ( 35) ATAACGCGGGGATCAGCGGTTCGATCCCG 1 chrXVI:819379-819710 ( 70) ATAACGCGGGGATCAGCGGTTCGATCCCG 1 chrII:266247-266551 ( 63) GTAATGTGGAGATCATCGGTTCAAATCCG 1 chrXIV:104668-105030 ( 40) GTAATGTGGAGATCATCGGTTCAAATCCG 1 chrIX:325611-325910 ( 72) GTAATGTGGAGATCATCGGTTCAAATCCG 1 chrIII:295381-295636 ( 60) GTAATGTGGAGATCATCGGTTCAAATCCG 1 chrXIV:568003-568312 ( 72) GCATGCGAGAGGCCCTGGGTTCAATTCCC 1 chrXV:980591-980868 ( 70) GCATGCGAGAGGCCCTGGGTTCAATTCCC 1 chrXII:92461-92749 ( 57) GCATGCGAGAGGCCCTGGGTTCAATTCCC 1 chrXIV:96120-96467 ( 8) TCCAAGGTGGGGACACGGGTTCGATTCTC 1 chrXV:110863-111121 ( 30) TCCAAGGTGGGGACACGGGTTCGATTCTC 1 chrX:197211-197311 ( 6) GCATGGGAGAGGTCTCCGGTTCGATTCCG 1 chrVII:774182-774595 ( 45) GCATGGGAGAGGTCTCCGGTTCGATTCCG 1 chrXII:875173-875652 ( 71) GATACCGAAATGTCAGGGGTTCGAGCCCC 1 chrVII:700819-701198 ( 5) GATACCGAAATGTCAGGGGTTCGAGCCCC 1 chrX:538432-538532 ( 68) CTAAGGAGAAGACTGCGGGTTCGAGTCCC 1 chrX:204592-204692 ( 66) GTCGCGTGCCAGATCGGGGTTCAATTCCC 1 chrX:541416-541516 ( 46) GTCGCGTGCCAGATCGGGGTTCAATTCCC 1 chrXII:426926-427457 ( 24) GTCGCGTGCCAGATCGGGGTTCAATTCCC 1 chrVI:137384-137687 ( 11) TTAATCGCAAGATCGTGAGTTCAACCCTC 1 chrXII:818468-818796 ( 60) CCGGTGGCTGTGATCCGGGTTCGAGTCCC 1 chrXV:976357-976568 ( 43) ATAATCTGAAGGTCGAGAGTTCGAACCTC 1 chrV:434344-434754 ( 52) GTGGCCGATGAAACCCTGGTTCGATTCTA 1 chrXI:313317-313575 ( 15) GTGGCCGATGAAACCCTGGTTCGATTCTA 1 chrVII:110490-110809 ( 36) GTGGCCGATGAAACCCTGGTTCGATTCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTAAYSRDRRGRWYMBGGGTTCGABYCCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 39168 bayes= 9.36281 E= 3.1e-158 -129 -47 112 -3 -261 12 -1200 130 109 12 -105 -261 125 -1200 -24 -129 -261 95 -24 39 -1200 147 112 -1200 -15 -105 112 -61 -15 -205 104 -15 20 -147 127 -161 97 -147 76 -1200 -29 -1200 176 -202 48 -1200 153 -1200 9 -105 -1200 97 -1200 170 -1200 20 85 76 -147 -261 -361 12 112 9 -1200 41 170 -202 -261 -1200 223 -1200 -1200 -1200 231 -1200 -1200 -1200 -1200 175 -1200 -1200 -1200 175 -1200 231 -1200 -1200 -15 -1200 186 -1200 175 -1200 -1200 -1200 -129 12 12 56 -1200 104 -1200 97 -1200 231 -1200 -1200 -1200 204 -1200 -80 -202 170 41 -1200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTAAYSRDRRGRWYMBGGGTTCGABYCCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 41 E= 3.1e-158 0.121951 0.146341 0.439024 0.292683 0.048780 0.219512 0.000000 0.731707 0.634146 0.219512 0.097561 0.048780 0.707317 0.000000 0.170732 0.121951 0.048780 0.390244 0.170732 0.390244 0.000000 0.560976 0.439024 0.000000 0.268293 0.097561 0.439024 0.195122 0.268293 0.048780 0.414634 0.268293 0.341463 0.073171 0.487805 0.097561 0.585366 0.073171 0.341463 0.000000 0.243902 0.000000 0.682927 0.073171 0.414634 0.000000 0.585366 0.000000 0.317073 0.097561 0.000000 0.585366 0.000000 0.658537 0.000000 0.341463 0.536585 0.341463 0.073171 0.048780 0.024390 0.219512 0.439024 0.317073 0.000000 0.268293 0.658537 0.073171 0.048780 0.000000 0.951220 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.268293 0.000000 0.731707 0.000000 1.000000 0.000000 0.000000 0.000000 0.121951 0.219512 0.219512 0.439024 0.000000 0.414634 0.000000 0.585366 0.000000 1.000000 0.000000 0.000000 0.000000 0.829268 0.000000 0.170732 0.073171 0.658537 0.268293 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTAAYSRDRRGRWYMBGGGTTCGABYCCC MEME-2 regular expression -------------------------------------------------------------------------------- [GT][TC][AC]A[CT][CG][GA][GAT][GA][AG][GA][GA][TA][CT][AC][GTC][GC]GGTTC[GA]A[TCG][TC]CC[CG] -------------------------------------------------------------------------------- Time 548.58 secs. ******************************************************************************** ******************************************************************************** MOTIF RTGTAYGGRTGYW MEME-3 width = 13 sites = 106 llr = 1095 E-value = 2.4e-085 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGTAYGGRTGYW MEME-3 Description -------------------------------------------------------------------------------- Simplified A 6::171::4:::5 pos.-specific C :::2:4:::::3: probability G 32a:1:9a6:9:2 matrix T :8:715:::9163 bits 2.3 2.1 * * 1.8 * ** 1.6 * ** * Relative 1.4 * ** ** Entropy 1.2 ** ** ** (14.9 bits) 0.9 ** ***** 0.7 ************ 0.5 ************* 0.2 ************* 0.0 ------------- Multilevel ATGTATGGGTGTA consensus G C C A CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTAYGGRTGYW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------- chrVIII:382933-383288 + 42 3.51e-08 TATTTTCATG ATGTATGGGTGTA TCGGATGTTC chrXI:431384-431650 - 26 8.27e-08 TGTAAAAATA GTGTATGGGTGTA TTTGCGCTGT chrXIII:296828-297086 - 58 1.58e-07 AAAGTTCTAG ATGTATGGGTGTG CGGGTAATGC chrIV:221981-222286 + 53 2.61e-07 TGAGATAAGG GTGTACGGGTGTG GTAACCGTCG chrVII:555382-555660 - 38 2.61e-07 AACACTTTTA ATGCACGGGTGTA AAAGGGATGT chrXIII:551386-551765 + 4 2.61e-07 TAA ATGTATGGGTGCG TAATGTACAG chrII:415520-415855 + 47 2.61e-07 GGATGACAAA ATGCATGGGTGTA AAAAAGGAAA chrXII:932063-932492 + 33 3.13e-07 TTGTGTTCAG ATGTACGGATGTA CGGATGTACG chrXIII:224094-224286 + 51 3.13e-07 TTTCAAAAAA ATGTATGGATGTA AAATTCAGTA chrXII:262769-263255 - 2 3.13e-07 ATTAACATAA ATGTATGGATGTA T chrVI:223947-224171 + 49 3.13e-07 GTCTAAGAGT ATGTACGGATGTA AAAGAAAACA chrXII:241560-242018 - 67 3.13e-07 TACATTTTAT ATGTACGGATGTA AAAAGGGAAA chrXV:678860-679168 + 47 3.13e-07 GGTCCACAAT ATGTACGGATGTA TGGTCCCAAA chrXV:1028726-1029070 + 60 4.43e-07 AACAAATCAA ATGTACGGATGCA CAATGGTAAA chrXV:92971-93299 + 28 4.43e-07 AACGTCACAT GTGTACGGATGTA GTTGTGTCAC chrVIII:505844-506156 + 52 4.43e-07 TCTGGGTGAA ATGTATGGATGCA TAATTGTCTC chrII:592924-593256 + 46 4.43e-07 GAGTTCAAAG ATGTATGGATGCA AGAAAAGAGG chrV:396238-396554 - 32 4.43e-07 GTTCACAAAA GTGTACGGATGTA TACAACAGGG chrXVI:731959-732278 - 35 5.01e-07 ACCATCCTAA AGGTATGGGTGTA CTGACGATGC chrV:305820-306183 - 33 5.01e-07 GGGTTTGTAA ATGTGTGGGTGTA CAGTCCCGAT chrVIII:125947-126282 - 37 5.25e-07 AAAGATGTAG GTGTACGGATGCA TTAACGTCTT chrXII:234502-234896 + 55 6.29e-07 TTTTTAAGGA AGGTATGGGTGCA GTGTGCTTAT chrIV:1359437-1359779 - 37 7.16e-07 TGGGTGCGTA ATGTACGGATGTT TAATGTCTTT chrIV:229565-229745 - 48 7.16e-07 AATCCTTCTG ATGTACGGATGTT TTGTGTAAGA chrV:69042-69411 + 5 7.92e-07 TGTG GGGTACGGGTGCA TGCTCGGCTT chrVI:95509-95859 + 3 7.92e-07 CG GTGTGTGGGTGCA TGACTGATTG chrVII:534844-535176 + 45 1.19e-06 GGTTACACAA ATGCACGGATGCA AATATAAAAT chrVII:149144-149487 + 54 1.19e-06 GTATGGGTGG GTGTATGGATGCT GTAAGCACAG chrV:140453-140890 + 55 1.43e-06 GCATTGTAAA AGGTATGGGTGCT TTGTGCGTCC chrIX:254247-254538 + 17 1.43e-06 GGCAATTAGA ATGTGTGGGTGCG GAAGCTCGCC chrXVI:281625-281914 - 46 1.43e-06 ATCAAAGGAA GTGTAAGGGTGTA AAGAGGTAAG chrXIII:732068-732349 - 47 1.51e-06 CACATGCGCG ATGTGCGGATGTA TTATGTCTTG chrXVI:575158-575418 - 61 1.67e-06 TTCTGTTCTT GTGTGTGGGTGCT TCAGGCAAAG chrXV:505121-505465 - 75 2.07e-06 ACCATATCAT ATGTTTGGGTGTG ATAAGGTTCA chrXII:921627-922018 + 69 2.07e-06 ACTACAGCGG GGGCACGGGTGCA TACATCTTCA chrIV:217230-217482 - 7 2.25e-06 ATAGAATAAA ATGTACGGGTTCA AAGCAG chrVII:483215-483715 + 37 2.25e-06 TCTACGTCTC GTGTATGGGTTTA TTTCTGCGGT chrXV:168030-168374 + 37 2.62e-06 ACTTAAATAT AGGCACGGGTGTT TAAAGCCGCC chrX:75397-75497 + 60 2.62e-06 TAAGTATGTG ATGTATGGGCGCA CAGTACCAAT chrIV:358142-358392 + 33 2.62e-06 TTGTCAGATA ATGTATGGGTGGT GTGTACACCA chrXIV:63151-63522 + 33 2.89e-06 GGTTGCTAAA ATGTTCGGATGTA AAGTAGTATT chrIV:130614-130939 + 24 2.89e-06 AAGCTATAAA ATGTGCGGATGTT TGTATATGTC chrXVI:406229-406529 - 41 2.89e-06 GGAGGTGGAA AGGTACGGATGTT AAACTTCATA chrIV:308041-308351 - 77 2.89e-06 GCCTGCATAT ATGTAAGGATGTA ACAGGAAATG chrVI:221759-222056 + 64 3.24e-06 GGTGTTAAAA ATGTACGGGTGAA AAAAGTCTTA chrIX:177580-178015 - 7 3.24e-06 TACGAGTGCT ATGAATGGGTGTT ACTCTG chrII:332361-332698 - 45 3.24e-06 GGGTTTAGAA TTGTATGGGTGCA GCAAGGAAAT chrXVI:829012-829447 + 43 3.75e-06 TGACCGGATG ATGTAAGGATGCA TGTCCCTACT chrXV:161153-161387 + 27 3.75e-06 AGGAATCCCG ATGTATGGGTTTG GTTGCCAGAA chrIII:163478-163853 + 33 4.03e-06 CCGCGGTTGG GTGCGTGGGTGCG GTAATTTAAC chrIX:316174-316572 - 28 4.52e-06 TTGTAAAATA ATGTATGGGTTCT AGTCTGAAAA chrII:605766-606095 - 35 4.52e-06 GATGGTGAAG ATGTACAGGTGTA AAACTGTCAG chrVII:648994-649304 + 36 4.52e-06 AAAAAAAGTA ATGTATGGGTTCT CGTTGTACGG chrIV:411289-411636 - 22 5.03e-06 TGGGTGCCCG GGGTGTGGGTGTT TGATTTGTTT chrXIII:754443-754755 + 24 5.03e-06 GCTATTCTGG ATGTATGGGGGTA TTTTATGTTT chrIV:538863-539290 - 78 5.03e-06 ATTGAATGAG GGGTGTGGGTGTG ATAATTCATG chrXII:805537-805720 - 44 5.53e-06 AAAATGTGAA ATGTTCGGATGTT AAGCAGGCAA chrV:85107-85532 - 30 6.11e-06 ATACATCGAG GGGTATGGGTGGA TGATATCACT chrVII:438609-438879 + 65 6.89e-06 AAGTTCCAAA ATGTATGGATGGT AAGGTCTTTT chrXV:866602-866918 - 27 6.89e-06 CAAACCCAGA ATGCTTGGATGTA GGGAAAAAAT chrV:53569-53882 + 61 6.89e-06 CACATATTTG GTGTTCGGATGTT AAACAGGGTA chrXII:65386-65696 + 10 6.89e-06 TGTGGCCGG ATGTACGGCTGTG TGATGCTCCT chrXIV:495220-495515 + 62 7.42e-06 TTTTTAAAGG AGGTTTGGGTGTG TATAATGTAC chrXVI:302720-302956 - 40 7.42e-06 GTGTTTTAGG ATGTCTGGATGTA CAAGTTAGCT chrX:73423-73523 - 39 8.31e-06 TTTCAGTGTG GTGCAAGGATGTA AAATGATGTG chrVIII:75001-75348 - 28 8.31e-06 GATGTAGAAA ATGTACAGGTGTG AACTTGCAGG chrXI:382218-382447 - 22 9.18e-06 GTTGGGTGTG ATGTCCGGATGCA ACAGCAGCAA chrIV:117209-117551 - 39 9.18e-06 GGGTGTAGAT ATGTATGGGTCTG AGATTAATAC chrVIII:148953-149214 + 50 9.18e-06 TAATTCAATG GTGCATGGGTGAA AATGTATGGG chrIV:490992-491241 - 64 1.11e-05 TTTTTCCTGA ATGATTGGGTGTA ATAAAATAGG chrXII:1012097-1012370 - 54 1.22e-05 TTTGCGTGTG GTGCATGGGTTCT ATTCCTCATT chrXII:212117-212527 - 85 1.34e-05 CTG ATGATCGGGTGCA CTATCACCAC chrXV:216283-216668 - 25 1.47e-05 GAAGGCGCGG GTGCTCGGATGTT CCGATAAAAT chrV:423126-423445 - 36 1.47e-05 GGTGTAGAAG GTGTACGGAGGTA AATATGCAGC chrX:651294-651394 - 33 1.61e-05 ATAATTATGG GTATATGGGTGTT GTTGTATAAA chrXII:1028222-1028627 - 23 1.61e-05 ATACATTTTG GTGCATGGGTGAT ATTTTGTCTT chrXII:903363-903691 - 44 1.61e-05 AATGCATGTG GTGCATGGGTCCA ATGCTTCTAT chrI:68316-68610 - 13 1.73e-05 ACGTGCTGCG GTGCATGGCTGTT TTACCCGTTT chrIX:99670-99978 + 37 1.73e-05 TCATGAATAA ATGTACTGGTGTT ACATGGTGTA chrXII:759044-759389 - 6 1.90e-05 CTGCGCGGTC TTGTATGGGTGGA GTTGA chrV:490884-491522 - 66 1.90e-05 CCGCAGGTGG GTGTGCGGGCGCT CAGCCTGCTA chrV:68075-68272 - 19 1.90e-05 GTCTATCCAA GTCTATGGGTGCT CCTATTGGGT chrII:604161-604449 - 45 1.90e-05 AATATGAAAA ATGTACAGATGTG TAAATGTACG chrXII:48730-49089 + 45 2.08e-05 GGTGTCTAAG ATGTACGGATCTT CATTGGGATG chrVII:310538-310865 - 34 2.24e-05 TGGGTCCCTG GTGTACAGATGTT ACATTGGTTA chrX:606183-606283 + 58 2.48e-05 AGTTAGATCT GTGTTAGGATGCA GGATGGGCAG chrXV:779732-780090 + 5 2.48e-05 CTGA TTGTATGGGTTTA TACAGGCCGT chrXV:514450-514663 + 23 2.48e-05 GTCACGCCGG ATGACTGGGTGTA GATAAATAGC chrIX:257390-257663 - 28 2.68e-05 ATACCGTGTG TTGTTTGGGTGTT TTCCTTTCAG chrXV:968075-968436 + 65 3.17e-05 AAAGCGTGGG GTGCGTGGGCGTG CGCTGCTCGA chrVII:856685-857045 + 50 3.17e-05 CATTGGTGCG GTGTATGGGCGGG TACCCTCAAA chrXV:978742-979118 + 59 3.44e-05 ATACACAAGG ATGAATGGGTTCT ACGACACCGC chrIV:357180-357694 + 79 3.69e-05 CGCGGTAAGA AGGATCGGGTGCA GCATGAAGA chrX:291085-291185 + 13 3.69e-05 ACTGTGATTG GCGCACGGGTGTG GAGGTGTCGC chrXV:638857-639441 + 58 4.03e-05 TCGAAGGGTA GTGAATGGCTGCA TGTAGTACAT chrXIV:499363-499557 + 24 4.03e-05 AACTCATGTG GTGCACTGGTGTT GTTTCCAAGA chrXV:391409-392037 - 42 4.68e-05 TTATGCCGGG GTGTACGTATGTT AATCAGTTAC chrXII:592389-592759 - 11 4.68e-05 ATATCTTCGG ATGCAAGGGTTCG AATCCCTTAG chrVII:700512-700874 + 85 4.68e-05 ATCTCTTCGG AGGCGCGGGTTCA AAC chrXII:731960-732315 + 75 4.68e-05 ATATCTTCGG ATGCAAGGGTTCG AATCCCTTAG chrXVI:699975-700368 - 12 5.06e-05 ATTGGGTGTG ATGTAAGGATTCG CGGTCCTCGA chrXII:449263-449919 + 19 5.90e-05 GCACAATTAA AGGTATCGGTGTT GTCAGAATTA chrXII:416780-416992 - 13 9.06e-05 CCTAATTTGG AGGTGTAGATGCA CAATGGCACA chrXI:99720-100056 - 11 1.20e-04 GCCTCCGAGG AGCCGTGGGTGCA CGGGCATGGA chrVIII:388788-389147 - 72 1.57e-04 ACACCAACAG ATACATGGGCGTG TGGTCTAGTG chrXII:342718-343128 + 8 1.79e-04 TATATAT ATATATGTGTGTA TATACATGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTAYGGRTGYW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVIII:382933-383288 3.5e-08 41_[+3]_46 chrXI:431384-431650 8.3e-08 25_[-3]_62 chrXIII:296828-297086 1.6e-07 57_[-3]_30 chrIV:221981-222286 2.6e-07 52_[+3]_35 chrVII:555382-555660 2.6e-07 37_[-3]_50 chrXIII:551386-551765 2.6e-07 3_[+3]_84 chrII:415520-415855 2.6e-07 46_[+3]_41 chrXII:932063-932492 3.1e-07 32_[+3]_55 chrXIII:224094-224286 3.1e-07 50_[+3]_37 chrXII:262769-263255 3.1e-07 1_[-3]_86 chrVI:223947-224171 3.1e-07 48_[+3]_39 chrXII:241560-242018 3.1e-07 66_[-3]_21 chrXV:678860-679168 3.1e-07 46_[+3]_41 chrXV:1028726-1029070 4.4e-07 59_[+3]_28 chrXV:92971-93299 4.4e-07 27_[+3]_60 chrVIII:505844-506156 4.4e-07 51_[+3]_36 chrII:592924-593256 4.4e-07 45_[+3]_42 chrV:396238-396554 4.4e-07 31_[-3]_56 chrXVI:731959-732278 5e-07 34_[-3]_53 chrV:305820-306183 5e-07 32_[-3]_55 chrVIII:125947-126282 5.2e-07 36_[-3]_51 chrXII:234502-234896 6.3e-07 54_[+3]_33 chrIV:1359437-1359779 7.2e-07 36_[-3]_51 chrIV:229565-229745 7.2e-07 47_[-3]_40 chrV:69042-69411 7.9e-07 4_[+3]_83 chrVI:95509-95859 7.9e-07 2_[+3]_85 chrVII:534844-535176 1.2e-06 44_[+3]_43 chrVII:149144-149487 1.2e-06 53_[+3]_34 chrV:140453-140890 1.4e-06 54_[+3]_33 chrIX:254247-254538 1.4e-06 16_[+3]_71 chrXVI:281625-281914 1.4e-06 45_[-3]_42 chrXIII:732068-732349 1.5e-06 46_[-3]_41 chrXVI:575158-575418 1.7e-06 60_[-3]_27 chrXV:505121-505465 2.1e-06 74_[-3]_13 chrXII:921627-922018 2.1e-06 68_[+3]_19 chrIV:217230-217482 2.3e-06 6_[-3]_81 chrVII:483215-483715 2.3e-06 36_[+3]_51 chrXV:168030-168374 2.6e-06 36_[+3]_51 chrX:75397-75497 2.6e-06 59_[+3]_28 chrIV:358142-358392 2.6e-06 32_[+3]_55 chrXIV:63151-63522 2.9e-06 32_[+3]_55 chrIV:130614-130939 2.9e-06 23_[+3]_64 chrXVI:406229-406529 2.9e-06 40_[-3]_47 chrIV:308041-308351 2.9e-06 76_[-3]_11 chrVI:221759-222056 3.2e-06 63_[+3]_24 chrIX:177580-178015 3.2e-06 6_[-3]_81 chrII:332361-332698 3.2e-06 44_[-3]_43 chrXVI:829012-829447 3.8e-06 42_[+3]_45 chrXV:161153-161387 3.8e-06 26_[+3]_61 chrIII:163478-163853 4e-06 32_[+3]_55 chrIX:316174-316572 4.5e-06 27_[-3]_60 chrII:605766-606095 4.5e-06 34_[-3]_53 chrVII:648994-649304 4.5e-06 35_[+3]_52 chrIV:411289-411636 5e-06 21_[-3]_66 chrXIII:754443-754755 5e-06 23_[+3]_64 chrIV:538863-539290 5e-06 77_[-3]_10 chrXII:805537-805720 5.5e-06 43_[-3]_44 chrV:85107-85532 6.1e-06 29_[-3]_58 chrVII:438609-438879 6.9e-06 64_[+3]_23 chrXV:866602-866918 6.9e-06 26_[-3]_61 chrV:53569-53882 6.9e-06 60_[+3]_27 chrXII:65386-65696 6.9e-06 9_[+3]_78 chrXIV:495220-495515 7.4e-06 61_[+3]_26 chrXVI:302720-302956 7.4e-06 39_[-3]_48 chrX:73423-73523 8.3e-06 38_[-3]_49 chrVIII:75001-75348 8.3e-06 27_[-3]_60 chrXI:382218-382447 9.2e-06 21_[-3]_66 chrIV:117209-117551 9.2e-06 38_[-3]_49 chrVIII:148953-149214 9.2e-06 49_[+3]_38 chrIV:490992-491241 1.1e-05 63_[-3]_24 chrXII:1012097-1012370 1.2e-05 53_[-3]_34 chrXII:212117-212527 1.3e-05 84_[-3]_3 chrXV:216283-216668 1.5e-05 24_[-3]_63 chrV:423126-423445 1.5e-05 35_[-3]_52 chrX:651294-651394 1.6e-05 32_[-3]_55 chrXII:1028222-1028627 1.6e-05 22_[-3]_65 chrXII:903363-903691 1.6e-05 43_[-3]_44 chrI:68316-68610 1.7e-05 12_[-3]_75 chrIX:99670-99978 1.7e-05 36_[+3]_51 chrXII:759044-759389 1.9e-05 5_[-3]_82 chrV:490884-491522 1.9e-05 65_[-3]_22 chrV:68075-68272 1.9e-05 18_[-3]_69 chrII:604161-604449 1.9e-05 44_[-3]_43 chrXII:48730-49089 2.1e-05 44_[+3]_43 chrVII:310538-310865 2.2e-05 33_[-3]_54 chrX:606183-606283 2.5e-05 57_[+3]_30 chrXV:779732-780090 2.5e-05 4_[+3]_83 chrXV:514450-514663 2.5e-05 22_[+3]_65 chrIX:257390-257663 2.7e-05 27_[-3]_60 chrXV:968075-968436 3.2e-05 64_[+3]_23 chrVII:856685-857045 3.2e-05 49_[+3]_38 chrXV:978742-979118 3.4e-05 58_[+3]_29 chrIV:357180-357694 3.7e-05 78_[+3]_9 chrX:291085-291185 3.7e-05 12_[+3]_75 chrXV:638857-639441 4e-05 57_[+3]_30 chrXIV:499363-499557 4e-05 23_[+3]_64 chrXV:391409-392037 4.7e-05 41_[-3]_46 chrXII:592389-592759 4.7e-05 10_[-3]_77 chrVII:700512-700874 4.7e-05 84_[+3]_3 chrXII:731960-732315 4.7e-05 74_[+3]_13 chrXVI:699975-700368 5.1e-05 11_[-3]_76 chrXII:449263-449919 5.9e-05 18_[+3]_69 chrXII:416780-416992 9.1e-05 12_[-3]_75 chrXI:99720-100056 0.00012 10_[-3]_77 chrVIII:388788-389147 0.00016 71_[-3]_16 chrXII:342718-343128 0.00018 7_[+3]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTAYGGRTGYW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGTAYGGRTGYW width=13 seqs=106 chrVIII:382933-383288 ( 42) ATGTATGGGTGTA 1 chrXI:431384-431650 ( 26) GTGTATGGGTGTA 1 chrXIII:296828-297086 ( 58) ATGTATGGGTGTG 1 chrIV:221981-222286 ( 53) GTGTACGGGTGTG 1 chrVII:555382-555660 ( 38) ATGCACGGGTGTA 1 chrXIII:551386-551765 ( 4) ATGTATGGGTGCG 1 chrII:415520-415855 ( 47) ATGCATGGGTGTA 1 chrXII:932063-932492 ( 33) ATGTACGGATGTA 1 chrXIII:224094-224286 ( 51) ATGTATGGATGTA 1 chrXII:262769-263255 ( 2) ATGTATGGATGTA 1 chrVI:223947-224171 ( 49) ATGTACGGATGTA 1 chrXII:241560-242018 ( 67) ATGTACGGATGTA 1 chrXV:678860-679168 ( 47) ATGTACGGATGTA 1 chrXV:1028726-1029070 ( 60) ATGTACGGATGCA 1 chrXV:92971-93299 ( 28) GTGTACGGATGTA 1 chrVIII:505844-506156 ( 52) ATGTATGGATGCA 1 chrII:592924-593256 ( 46) ATGTATGGATGCA 1 chrV:396238-396554 ( 32) GTGTACGGATGTA 1 chrXVI:731959-732278 ( 35) AGGTATGGGTGTA 1 chrV:305820-306183 ( 33) ATGTGTGGGTGTA 1 chrVIII:125947-126282 ( 37) GTGTACGGATGCA 1 chrXII:234502-234896 ( 55) AGGTATGGGTGCA 1 chrIV:1359437-1359779 ( 37) ATGTACGGATGTT 1 chrIV:229565-229745 ( 48) ATGTACGGATGTT 1 chrV:69042-69411 ( 5) GGGTACGGGTGCA 1 chrVI:95509-95859 ( 3) GTGTGTGGGTGCA 1 chrVII:534844-535176 ( 45) ATGCACGGATGCA 1 chrVII:149144-149487 ( 54) GTGTATGGATGCT 1 chrV:140453-140890 ( 55) AGGTATGGGTGCT 1 chrIX:254247-254538 ( 17) ATGTGTGGGTGCG 1 chrXVI:281625-281914 ( 46) GTGTAAGGGTGTA 1 chrXIII:732068-732349 ( 47) ATGTGCGGATGTA 1 chrXVI:575158-575418 ( 61) GTGTGTGGGTGCT 1 chrXV:505121-505465 ( 75) ATGTTTGGGTGTG 1 chrXII:921627-922018 ( 69) GGGCACGGGTGCA 1 chrIV:217230-217482 ( 7) ATGTACGGGTTCA 1 chrVII:483215-483715 ( 37) GTGTATGGGTTTA 1 chrXV:168030-168374 ( 37) AGGCACGGGTGTT 1 chrX:75397-75497 ( 60) ATGTATGGGCGCA 1 chrIV:358142-358392 ( 33) ATGTATGGGTGGT 1 chrXIV:63151-63522 ( 33) ATGTTCGGATGTA 1 chrIV:130614-130939 ( 24) ATGTGCGGATGTT 1 chrXVI:406229-406529 ( 41) AGGTACGGATGTT 1 chrIV:308041-308351 ( 77) ATGTAAGGATGTA 1 chrVI:221759-222056 ( 64) ATGTACGGGTGAA 1 chrIX:177580-178015 ( 7) ATGAATGGGTGTT 1 chrII:332361-332698 ( 45) TTGTATGGGTGCA 1 chrXVI:829012-829447 ( 43) ATGTAAGGATGCA 1 chrXV:161153-161387 ( 27) ATGTATGGGTTTG 1 chrIII:163478-163853 ( 33) GTGCGTGGGTGCG 1 chrIX:316174-316572 ( 28) ATGTATGGGTTCT 1 chrII:605766-606095 ( 35) ATGTACAGGTGTA 1 chrVII:648994-649304 ( 36) ATGTATGGGTTCT 1 chrIV:411289-411636 ( 22) GGGTGTGGGTGTT 1 chrXIII:754443-754755 ( 24) ATGTATGGGGGTA 1 chrIV:538863-539290 ( 78) GGGTGTGGGTGTG 1 chrXII:805537-805720 ( 44) ATGTTCGGATGTT 1 chrV:85107-85532 ( 30) GGGTATGGGTGGA 1 chrVII:438609-438879 ( 65) ATGTATGGATGGT 1 chrXV:866602-866918 ( 27) ATGCTTGGATGTA 1 chrV:53569-53882 ( 61) GTGTTCGGATGTT 1 chrXII:65386-65696 ( 10) ATGTACGGCTGTG 1 chrXIV:495220-495515 ( 62) AGGTTTGGGTGTG 1 chrXVI:302720-302956 ( 40) ATGTCTGGATGTA 1 chrX:73423-73523 ( 39) GTGCAAGGATGTA 1 chrVIII:75001-75348 ( 28) ATGTACAGGTGTG 1 chrXI:382218-382447 ( 22) ATGTCCGGATGCA 1 chrIV:117209-117551 ( 39) ATGTATGGGTCTG 1 chrVIII:148953-149214 ( 50) GTGCATGGGTGAA 1 chrIV:490992-491241 ( 64) ATGATTGGGTGTA 1 chrXII:1012097-1012370 ( 54) GTGCATGGGTTCT 1 chrXII:212117-212527 ( 85) ATGATCGGGTGCA 1 chrXV:216283-216668 ( 25) GTGCTCGGATGTT 1 chrV:423126-423445 ( 36) GTGTACGGAGGTA 1 chrX:651294-651394 ( 33) GTATATGGGTGTT 1 chrXII:1028222-1028627 ( 23) GTGCATGGGTGAT 1 chrXII:903363-903691 ( 44) GTGCATGGGTCCA 1 chrI:68316-68610 ( 13) GTGCATGGCTGTT 1 chrIX:99670-99978 ( 37) ATGTACTGGTGTT 1 chrXII:759044-759389 ( 6) TTGTATGGGTGGA 1 chrV:490884-491522 ( 66) GTGTGCGGGCGCT 1 chrV:68075-68272 ( 19) GTCTATGGGTGCT 1 chrII:604161-604449 ( 45) ATGTACAGATGTG 1 chrXII:48730-49089 ( 45) ATGTACGGATCTT 1 chrVII:310538-310865 ( 34) GTGTACAGATGTT 1 chrX:606183-606283 ( 58) GTGTTAGGATGCA 1 chrXV:779732-780090 ( 5) TTGTATGGGTTTA 1 chrXV:514450-514663 ( 23) ATGACTGGGTGTA 1 chrIX:257390-257663 ( 28) TTGTTTGGGTGTT 1 chrXV:968075-968436 ( 65) GTGCGTGGGCGTG 1 chrVII:856685-857045 ( 50) GTGTATGGGCGGG 1 chrXV:978742-979118 ( 59) ATGAATGGGTTCT 1 chrIV:357180-357694 ( 79) AGGATCGGGTGCA 1 chrX:291085-291185 ( 13) GCGCACGGGTGTG 1 chrXV:638857-639441 ( 58) GTGAATGGCTGCA 1 chrXIV:499363-499557 ( 24) GTGCACTGGTGTT 1 chrXV:391409-392037 ( 42) GTGTACGTATGTT 1 chrXII:592389-592759 ( 11) ATGCAAGGGTTCG 1 chrVII:700512-700874 ( 85) AGGCGCGGGTTCA 1 chrXII:731960-732315 ( 75) ATGCAAGGGTTCG 1 chrXVI:699975-700368 ( 12) ATGTAAGGATTCG 1 chrXII:449263-449919 ( 19) AGGTATCGGTGTT 1 chrXII:416780-416992 ( 13) AGGTGTAGATGCA 1 chrXI:99720-100056 ( 11) AGCCGTGGGTGCA 1 chrVIII:388788-389147 ( 72) ATACATGGGCGTG 1 chrXII:342718-343128 ( 8) ATATATGTGTGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTAYGGRTGYW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 13 n= 47872 bayes= 9.36679 E= 2.4e-085 106 -1337 75 -298 -1337 -442 -42 149 -339 -342 224 -1337 -217 4 -1337 129 129 -284 -61 -140 -198 94 -1337 85 -266 -442 219 -398 -1337 -1337 228 -398 27 -284 160 -1337 -1337 -210 -342 165 -1337 -284 209 -140 -339 79 -210 95 80 -1337 -10 -3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTAYGGRTGYW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 13 nsites= 106 E= 2.4e-085 0.622642 0.000000 0.339623 0.037736 0.000000 0.009434 0.150943 0.839623 0.028302 0.018868 0.952830 0.000000 0.066038 0.207547 0.000000 0.726415 0.726415 0.028302 0.132075 0.113208 0.075472 0.386792 0.000000 0.537736 0.047170 0.009434 0.924528 0.018868 0.000000 0.000000 0.981132 0.018868 0.358491 0.028302 0.613208 0.000000 0.000000 0.047170 0.018868 0.933962 0.000000 0.028302 0.858491 0.113208 0.028302 0.349057 0.047170 0.575472 0.518868 0.000000 0.188679 0.292453 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTAYGGRTGYW MEME-3 regular expression -------------------------------------------------------------------------------- [AG]TG[TC]A[TC]GG[GA]TG[TC][AT] -------------------------------------------------------------------------------- Time 805.19 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:976026-976819 5.54e-01 100 chrXIII:352146-352431 1.50e-06 46_[-1(8.79e-09)]_33 chrXII:341087-341592 7.69e-01 100 chrVII:774182-774595 1.32e-12 15_[-1(1.20e-09)]_8_[+2(1.89e-10)]_\ 27 chrVIII:50655-50898 9.74e-01 100 chrXII:459516-460381 5.39e-01 100 chrXV:989036-989628 1.81e-02 100 chrXII:426926-427457 1.57e-05 23_[+2(1.11e-09)]_48 chrV:266096-266506 1.68e-01 100 chrVII:110490-110809 1.90e-05 35_[-2(2.00e-08)]_36 chrXII:348023-348760 6.76e-01 100 chrIV:358142-358392 1.00e-02 32_[+3(2.62e-06)]_55 chrXIV:739261-739673 3.98e-01 100 chrVII:483215-483715 4.34e-05 13_[+3(9.78e-05)]_10_[+3(2.25e-06)]_\ 11_[+2(7.97e-06)]_11 chrXII:762688-763098 5.28e-01 100 chrXII:722739-723229 7.86e-01 100 chrV:438570-438834 3.78e-04 52_[-1(3.46e-08)]_27 chrX:75397-75497 1.35e-03 17_[+3(5.53e-06)]_29_[+3(2.62e-06)]_\ 28 chrXI:326988-327364 3.96e-04 19_[-1(2.38e-07)]_36_[-1(1.99e-05)]_\ 3 chrXII:731960-732315 5.19e-09 7_[-1(1.56e-09)]_46_[+3(4.68e-05)]_\ 13 chrIII:295381-295636 3.55e-13 30_[-1(1.37e-09)]_8_[+2(4.03e-11)]_\ 12 chrXII:713063-713559 9.88e-01 100 chrXV:424114-424657 8.40e-01 100 chrVII:609638-610177 4.15e-03 65_[+3(5.06e-05)]_22 chrXII:374169-374682 1.74e-02 13_[+2(1.38e-05)]_58 chrIX:388186-388642 3.76e-01 100 chrVIII:120869-121279 9.97e-01 100 chrX:541416-541516 4.69e-07 17_[-1(8.65e-05)]_7_[+2(1.11e-09)]_\ 26 chrVII:115332-115640 4.80e-06 56_[-1(9.11e-10)]_23 chrXII:81831-82241 7.04e-02 100 chrV:377810-378313 6.77e-01 100 chrXIII:797911-798289 9.73e-01 100 chrXI:230275-230771 5.71e-01 100 chrIV:1161564-1162012 7.48e-01 100 chrXI:230900-231711 6.87e-01 100 chrXVI:282209-282619 9.98e-01 100 chrXIII:305976-307035 9.06e-01 100 chrXII:283022-283964 6.27e-01 100 chrVIII:116011-116350 3.59e-06 23_[+1(1.37e-09)]_56 chrXVI:405183-405660 6.75e-01 100 chrIV:541217-541697 7.17e-01 100 chrV:152576-153297 7.51e-01 100 chrX:227747-227847 5.79e-01 100 chrX:294529-294629 6.25e-01 100 chrXII:65386-65696 2.23e-03 9_[+3(6.89e-06)]_78 chrXII:232033-234089 7.33e-01 100 chrV:238215-238321 9.90e-01 100 chrVII:482246-482420 3.92e-01 100 chrII:604161-604449 4.62e-03 28_[-3(5.90e-05)]_3_[-3(1.90e-05)]_\ 43 chrXIV:102703-103113 5.72e-01 100 chrVII:545315-545725 1.00e+00 100 chrXII:628182-628672 4.36e-04 10_[-1(1.13e-07)]_69 chrXV:83097-83507 4.20e-02 100 chrVIII:150749-151159 9.53e-01 100 chrVII:738966-739295 1.12e-06 46_[-1(6.07e-11)]_33 chrXII:125122-125412 9.58e-01 100 chrXII:369010-371395 4.66e-01 100 chrIV:721677-722199 3.23e-01 100 chrXII:867304-867714 1.91e-01 100 chrIII:227786-228153 1.19e-05 27_[-1(1.37e-09)]_52 chrX:223955-224055 5.25e-01 100 chrXV:514450-514663 2.23e-02 22_[+3(2.48e-05)]_65 chrXV:161153-161387 7.52e-03 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chrV:396238-396554 2.34e-03 31_[-3(4.43e-07)]_5_[-3(1.47e-05)]_\ 38 chrV:66943-67061 8.55e-01 100 chrIV:229565-229745 2.92e-03 23_[-3(1.88e-06)]_11_[-3(7.16e-07)]_\ 40 chrII:592924-593256 1.39e-03 45_[+3(4.43e-07)]_42 chrIV:541217-541700 7.17e-01 100 chrXVI:502614-503284 5.11e-01 100 chrXVI:860213-860545 2.35e-03 54_[-1(7.20e-07)]_25 chrXV:347408-347681 8.72e-01 100 chrXII:281962-282210 2.93e-01 100 chrXV:594270-594575 5.04e-02 27_[+1(3.44e-05)]_52 chrIV:591663-592083 3.51e-02 100 chrXIII:353134-353321 1.55e-02 100 chrXI:308064-308367 3.00e-04 26_[+1(3.46e-08)]_53 chrI:202285-202887 3.36e-01 100 chrIII:142622-142937 3.41e-03 16_[+1(7.20e-07)]_63 chrVIII:125947-126282 1.71e-03 36_[-3(5.25e-07)]_1_[-3(5.06e-05)]_\ 37 chrXV:670933-671504 5.64e-01 100 chrXII:157010-157179 8.48e-01 100 chrXIII:914932-915553 4.19e-01 100 chrV:431072-431517 1.83e-01 100 chrXII:167768-168216 1.82e-06 57_[+1(1.06e-10)]_22 chrX:74557-74657 3.27e-01 100 chrII:605766-606095 8.86e-04 34_[-3(4.52e-06)]_53 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17_[+1(1.07e-08)]_62 chrXII:300939-301244 2.97e-01 100 chrXII:29533-29766 5.33e-01 100 chrIV:1490006-1490487 5.77e-01 100 chrVIII:382933-383288 2.70e-05 41_[+3(3.51e-08)]_46 chrV:441835-442557 2.83e-01 100 chrXII:784153-784618 4.29e-06 23_[-1(1.20e-09)]_56 chrXII:212117-212527 1.67e-02 84_[-3(1.34e-05)]_3 chrXIII:279888-280193 5.67e-01 100 chrII:165009-165627 2.24e-01 100 chrXVI:404284-404507 1.47e-01 100 chrXV:866602-866918 1.70e-03 26_[-3(6.89e-06)]_7_[+3(5.03e-06)]_\ 41 chrXV:980591-980868 2.08e-09 8_[-1(2.95e-05)]_40_[+2(4.50e-11)]_\ 2 chrIII:228528-229004 5.90e-01 100 chrVII:959328-959664 6.59e-01 100 chrVII:968793-969185 8.90e-02 100 chrXII:329362-329666 5.20e-01 100 chrXV:968075-968436 1.03e-02 64_[+3(3.17e-05)]_23 chrVIII:455555-456089 9.43e-01 100 chrXVI:463929-464230 1.20e-01 100 chrV:69042-69411 3.81e-05 4_[+3(7.92e-07)]_83 chrXII:796989-797383 6.78e-01 100 chrVII:426943-427207 1.67e-01 100 chrIV:323023-323294 9.25e-01 100 chrXII:263541-264091 9.26e-01 100 chrXII:950468-951355 3.98e-01 100 chrV:79189-79599 2.21e-01 100 chrXII:875173-875652 8.56e-13 18_[-1(9.11e-10)]_31_[+2(2.74e-10)]_\ 1 chrXIV:351893-352423 7.08e-01 100 chrVII:328440-328868 1.30e-08 11_[+2(8.04e-13)]_60 chrXIII:431685-432095 1.40e-01 40_[-3(8.46e-05)]_47 chrV:423126-423445 3.97e-02 35_[-3(1.47e-05)]_52 chrIV:411289-411636 1.31e-03 21_[-3(5.03e-06)]_66 chrV:140945-141461 9.17e-01 100 chrIX:394337-395704 9.14e-01 100 chrIV:1080427-1080909 7.02e-02 100 chrXII:625513-625679 4.37e-01 100 chrXV:619126-619556 7.58e-02 100 chrIV:437614-437930 2.22e-06 54_[-1(1.06e-10)]_25 chrXII:164014-164424 6.80e-01 100 chrXII:157869-158279 3.86e-01 100 chrX:415889-415989 4.41e-02 100 chrXII:327763-327954 2.98e-01 100 chrXII:214726-215112 3.42e-15 23_[-2(4.85e-12)]_8_[+1(4.35e-10)]_\ 19 chrI:198387-198653 4.13e-01 100 chrV:51946-52163 9.68e-01 100 chrXII:368176-368509 7.09e-01 100 chrXV:348927-349360 3.46e-02 100 chrIII:151225-151495 7.96e-05 20_[+1(7.15e-09)]_59 chrIV:1165041-1165306 7.08e-01 100 chrX:348840-348940 7.64e-01 100 chrXIV:415686-416096 7.46e-01 100 chrVII:779474-779761 3.30e-01 100 chrV:61538-62099 8.54e-01 100 chrXII:538645-539055 7.02e-01 100 chrXVI:921173-921481 6.23e-01 100 chrII:266247-266551 3.55e-13 33_[-1(1.37e-09)]_8_[+2(4.03e-11)]_\ 9 chrX:123513-123613 9.96e-01 100 chrXII:589054-589257 5.59e-01 100 chrV:85107-85532 1.01e-02 [-3(1.73e-05)]_16_[-3(6.11e-06)]_58 chrVII:311223-311545 9.91e-01 100 chrXIII:290654-290950 7.49e-01 100 chrVII:1079710-1080120 4.77e-01 100 chrXII:975751-976132 8.99e-01 100 chrXV:620464-620684 4.01e-02 100 chrII:702109-702466 8.60e-01 100 chrXII:712348-712697 2.10e-02 67_[+2(4.38e-05)]_4 chrXIV:96120-96467 2.46e-08 7_[-2(1.72e-10)]_64 chrXIII:626527-626930 9.82e-01 100 chrXII:547085-547451 4.15e-01 100 chrXII:264710-265120 1.64e-01 100 chrXII:853555-853965 6.82e-01 100 chrXVI:435808-436119 5.08e-01 100 chrIV:1305482-1305766 2.21e-06 60_[-1(1.06e-10)]_19 chrXV:505121-505465 4.64e-03 49_[-3(4.52e-06)]_12_[-3(2.07e-06)]_\ 13 chrXVI:608197-608637 1.71e-01 100 chrXI:313317-313575 1.90e-05 14_[-2(2.00e-08)]_57 chrXII:573348-573758 4.53e-01 100 chrIV:130614-130939 5.26e-03 23_[+3(2.89e-06)]_64 chrXII:1027171-1027311 7.14e-01 100 chrV:434344-434754 1.07e-04 51_[-2(2.00e-08)]_20 chrVIII:148953-149214 5.07e-03 49_[+3(9.18e-06)]_38 chrIV:599681-600325 2.50e-01 100 chrXII:448350-448907 3.86e-01 100 chrXII:718374-718784 3.84e-01 100 chrXII:674704-675013 3.67e-01 100 chrV:18760-19147 6.93e-02 100 chrVII:413324-413718 7.57e-01 100 chrVII:848571-848981 9.03e-01 100 chrIV:366193-366385 9.60e-01 100 chrVIII:451617-452404 1.32e-01 100 chrXII:954287-954879 3.79e-01 100 chrVIII:452530-452997 4.41e-01 100 chrVI:221759-222056 1.55e-02 63_[+3(3.24e-06)]_24 chrIV:385886-386279 6.63e-01 100 chrV:487246-487508 8.97e-09 13_[-2(8.04e-13)]_58 chrXII:611277-612209 5.09e-01 100 chrXV:673815-673984 3.84e-01 100 chrXV:1028726-1029070 1.59e-03 59_[+3(4.43e-07)]_28 chrXV:443731-444109 4.88e-02 100 chrVII:122127-122490 1.02e-13 15_[-1(7.15e-09)]_8_[+2(9.46e-13)]_\ 27 chrIV:1362288-1362680 8.12e-01 100 chrXI:259713-259930 9.39e-01 100 chrXII:253171-253665 3.50e-01 100 chrXII:566783-566983 4.38e-01 100 chrIV:357180-357694 2.71e-02 78_[+3(3.69e-05)]_9 chrVIII:56012-56362 8.11e-01 100 chrXV:780325-781012 9.59e-01 100 chrIII:8927-9232 7.80e-01 100 chrII:255109-255519 2.17e-01 100 chrXVI:821917-822309 8.57e-01 100 chrIV:234397-234608 9.49e-01 100 chrXI:517835-518126 5.38e-06 62_[-1(1.20e-09)]_17 chrX:390951-391051 1.82e-04 18_[+1(7.47e-08)]_61 chrXIII:540150-540965 7.30e-01 100 chrII:373183-373445 1.35e-01 100 chrXIII:302707-303215 2.16e-01 100 chrXV:161641-162005 6.34e-02 100 chrII:378797-379143 7.70e-01 100 chrVII:205366-205761 4.60e-04 12_[-1(1.13e-07)]_67 chrVII:412218-412514 2.55e-04 25_[+1(3.46e-08)]_54 chrIV:117209-117551 1.64e-02 38_[-3(9.18e-06)]_49 chrXI:140928-141252 8.66e-01 100 chrXII:808839-809655 6.63e-01 100 chrXII:734619-735012 4.35e-15 41_[-1(6.07e-11)]_9_[+2(5.57e-12)] chrIV:1156232-1156638 7.42e-01 100 chrXIII:510739-511187 7.09e-01 100 chrXIV:495220-495515 1.17e-02 61_[+3(7.42e-06)]_4_[+3(3.17e-05)]_\ 9 chrXII:167174-167286 3.79e-01 100 chrXII:815659-815839 9.76e-01 100 chrVI:224862-225370 8.64e-01 100 chrXIII:253378-253597 2.45e-01 100 chrX:26262-26362 1.87e-01 100 chrXV:445129-445328 3.54e-01 100 chrIV:1402972-1403376 5.27e-01 100 chrXII:605132-605608 6.00e-01 100 chrXI:143057-143467 7.34e-01 100 chrXII:97382-97792 7.61e-01 100 chrVI:31885-32262 8.90e-01 100 chrIV:1095254-1095617 5.01e-05 50_[+1(5.17e-09)]_29 chrXV:391409-392037 7.75e-02 41_[-3(4.68e-05)]_46 chrII:36259-36548 2.12e-05 49_[-1(8.79e-09)]_30 chrXII:423913-424598 2.11e-01 100 chrXI:382218-382447 4.39e-03 21_[-3(9.18e-06)]_43_[-3(3.69e-05)]_\ 10 chrXVI:829012-829447 5.53e-03 42_[+3(3.75e-06)]_45 chrXII:1018903-1019349 7.72e-01 100 chrII:624906-625208 8.13e-01 100 chrXII:856982-857621 6.54e-01 100 chrXII:759044-759389 1.07e-02 5_[-3(1.90e-05)]_82 chrXII:410241-410644 1.51e-01 100 chrVIII:55388-55646 1.84e-01 100 chrXII:789720-790130 9.83e-01 100 chrV:461835-462260 5.02e-01 100 chrXV:622019-622429 8.92e-01 100 chrXII:728127-728773 4.12e-02 100 chrXVI:587099-587664 8.27e-01 100 chrXII:289738-289959 4.93e-01 100 chrXIV:63151-63522 1.05e-02 32_[+3(2.89e-06)]_55 chrXII:897711-898224 1.95e-01 100 chrIV:359441-359753 2.07e-06 34_[-1(9.11e-10)]_45 chrXII:1051939-1052268 4.35e-15 27_[-2(5.57e-12)]_9_[+1(6.07e-11)]_\ 14 chrXII:691314-691502 2.23e-01 100 chrX:123123-123223 4.18e-01 100 chrIX:316174-316572 1.62e-03 27_[-3(4.52e-06)]_60 chrV:241903-242486 2.78e-01 100 chrIII:177288-177539 3.50e-01 100 chrVII:702741-703381 9.60e-01 100 chrX:422779-422879 5.54e-04 58_[-1(7.47e-08)]_21 chrXIV:568003-568312 1.10e-10 12_[-1(1.49e-06)]_38_[+2(4.50e-11)] chrVII:323368-324207 8.45e-01 100 chrXV:725300-725710 8.70e-01 100 chrX:378200-378300 1.19e-04 69_[-1(3.46e-08)]_10 chrXV:159565-160192 4.22e-01 100 chrVII:278386-278614 5.59e-01 100 chrIV:550874-551161 2.68e-01 100 chrIV:221257-221667 6.23e-01 100 chrI:141932-142342 1.72e-01 100 chrXII:645764-646334 7.71e-01 100 chrXIII:298311-298845 9.84e-01 100 chrXVI:575158-575418 6.66e-03 60_[-3(1.67e-06)]_27 chrXIV:502116-502526 8.52e-01 100 chrXVI:810559-810818 1.34e-05 42_[-1(3.28e-09)]_37 chrXIV:631772-632053 3.07e-02 29_[+1(4.12e-05)]_50 chrVII:730985-731310 1.80e-05 44_[-1(3.28e-09)]_35 chrXII:248191-248601 7.86e-01 100 chrII:140499-140732 3.37e-01 100 chrVII:736168-736504 4.44e-01 100 chrIX:255247-255657 4.60e-01 100 chrXII:48730-49089 6.77e-02 44_[+3(2.08e-05)]_43 chrXVI:581917-582234 8.43e-15 41_[-1(7.15e-09)]_8_[+2(9.46e-13)]_\ 1 chrXII:388476-388702 2.99e-01 100 chrXV:80582-80992 9.69e-01 100 chrXVI:731959-732278 5.43e-04 34_[-3(5.01e-07)]_53 chrXVI:585743-586982 6.29e-02 100 chrVII:438609-438879 5.72e-03 41_[+3(2.68e-05)]_10_[+3(6.89e-06)]_\ 23 chrIV:722404-722814 6.31e-01 100 chrX:73423-73523 3.24e-02 38_[-3(8.31e-06)]_49 chrIV:1492355-1492765 7.73e-01 100 chrXII:898828-899783 4.72e-01 100 chrXV:216283-216668 2.39e-02 32_[-3(1.11e-05)]_55 chrI:68316-68610 2.72e-02 12_[-3(1.73e-05)]_75 chrVII:310538-310865 3.91e-02 33_[-3(2.24e-05)]_54 chrXII:568011-568378 2.89e-01 100 chrXII:737713-738092 7.33e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************