Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.020263 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.059643 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.081315 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.020615 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background Finished invoke: name: bg status: 0 time: 0.013449 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 563.678193 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 64.510102 Invoking: centrimo -seqlen 356 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.202865 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.394101 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary DTGGCCBAGTBGKTWAAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.388643 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary RAGRTCMBSGGTTCGATYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.313499 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary HNWTTWWACAYCCRTACATY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.349983 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.23538 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary ACCACTM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.270822 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary AAGAAAHA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.229955 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary AACTKGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.240448 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.266767 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary GACCAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.254255 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.212975 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary CCCATKC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.246564 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.247024 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.218487 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary AGCGCMAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.217368 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary ATTAGAAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.217723 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary SCACGCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.23096 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary AAAGCGWG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.210261 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary AKATCGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo18 status: 0 time: 0.448551 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/spamo_out_19 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background -primary ATCGTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo19 status: 0 time: 0.19529 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif DTGGCCBAGTBGKTWAAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo1 status: 0 time: 0.18578 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif RAGRTCMBSGGTTCGATYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo2 status: 0 time: 0.217225 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif HNWTTWWACAYCCRTACATY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo3 status: 0 time: 0.187281 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo4 status: 0 time: 0.114013 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif ACCACTM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo5 status: 0 time: 0.098587 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif AAGAAAHA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo6 status: 0 time: 0.11477 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif AACTKGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo7 status: 0 time: 0.101273 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo8 status: 0 time: 0.095394 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif GACCAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo9 status: 0 time: 0.088407 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo10 status: 0 time: 0.130151 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif CCCATKC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo11 status: 0 time: 0.099401 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo12 status: 0 time: 0.096742 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo13 status: 0 time: 0.093524 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif AGCGCMAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo14 status: 0 time: 0.106054 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif ATTAGAAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo15 status: 0 time: 0.098472 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif SCACGCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo16 status: 0 time: 0.096803 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif AAAGCGWG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo17 status: 0 time: 0.113523 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif AKATCGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo18 status: 0 time: 0.096397 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/fimo_out_19 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/background --motif ATCGTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/YJM789--SMP1.fa Finished invoke: name: fimo19 status: 0 time: 0.100367 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--SMP1/summary.tsv Finished invoke: name: summary status: 0 time: 0.190667 Done