Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.017404 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.058634 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.075198 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.015244 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.067627 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background Finished invoke: name: bg status: 0 time: 0.013117 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 892.485887 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/seqs-shuffled Finished invoke: name: dreme status: 0 time: 71.658944 Invoking: centrimo -seqlen 516 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.186061 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.346502 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background -primary TMAYCDKRAGGTCMBSGGTTCGATYCCSVK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.235035 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background -primary KTGGCYBAGTBGKTARRGCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.260065 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background -primary RAARAAAAAARAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.371049 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background -primary AAGAAM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.388092 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.186619 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background -primary CCWTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.174872 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background -primary TACTAACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.166188 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background -primary ACCASM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.343996 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background -primary ATAYATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.25251 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background -primary RATGGCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.168316 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background --motif TMAYCDKRAGGTCMBSGGTTCGATYCCSVK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa Finished invoke: name: fimo1 status: 0 time: 0.284261 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background --motif KTGGCYBAGTBGKTARRGCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa Finished invoke: name: fimo2 status: 0 time: 0.266777 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background --motif RAARAAAAAARAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa Finished invoke: name: fimo3 status: 0 time: 0.277404 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background --motif AAGAAM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa Finished invoke: name: fimo4 status: 0 time: 0.169712 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa Finished invoke: name: fimo5 status: 0 time: 0.187962 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background --motif CCWTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa Finished invoke: name: fimo6 status: 0 time: 0.189727 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background --motif TACTAACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa Finished invoke: name: fimo7 status: 0 time: 0.186466 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background --motif ACCASM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa Finished invoke: name: fimo8 status: 0 time: 0.170513 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background --motif ATAYATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa Finished invoke: name: fimo9 status: 0 time: 0.176377 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/background --motif RATGGCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/YJM789--RPD3.fa Finished invoke: name: fimo10 status: 0 time: 0.188703 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--RPD3/summary.tsv Finished invoke: name: summary status: 0 time: 0.149943 Done