Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.020295 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.056197 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.072457 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.013564 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background Finished invoke: name: bg status: 0 time: 0.01202 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 513.405329 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/seqs-shuffled Finished invoke: name: dreme status: 0 time: 59.834646 Invoking: centrimo -seqlen 340 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.180685 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.533912 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background -primary TGGCCVAGTKGKTWARGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.35767 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background -primary WKTAATSDRRAGRTCMBSGGTTCGAYYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.282565 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background -primary WTTTWACAYCCRTACAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.306598 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.232239 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.221375 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background -primary CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.210026 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background -primary ATGGGBG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.237113 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.209622 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background -primary SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.29905 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background -primary CGTGYTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.175603 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background -primary AGARTCAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.207786 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background -primary GRTCTCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.189309 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background -primary ACTTSTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.208863 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background -primary CAGWCGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.205247 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background --motif TGGCCVAGTKGKTWARGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa Finished invoke: name: fimo1 status: 0 time: 0.189832 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background --motif WKTAATSDRRAGRTCMBSGGTTCGAYYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa Finished invoke: name: fimo2 status: 0 time: 0.187143 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background --motif WTTTWACAYCCRTACAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa Finished invoke: name: fimo3 status: 0 time: 0.163011 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa Finished invoke: name: fimo4 status: 0 time: 0.096734 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa Finished invoke: name: fimo5 status: 0 time: 0.099434 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background --motif CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa Finished invoke: name: fimo6 status: 0 time: 0.089349 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background --motif ATGGGBG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa Finished invoke: name: fimo7 status: 0 time: 0.08965 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa Finished invoke: name: fimo8 status: 0 time: 0.092687 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background --motif SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa Finished invoke: name: fimo9 status: 0 time: 0.075981 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background --motif CGTGYTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa Finished invoke: name: fimo10 status: 0 time: 0.094912 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background --motif AGARTCAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa Finished invoke: name: fimo11 status: 0 time: 0.090243 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background --motif GRTCTCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa Finished invoke: name: fimo12 status: 0 time: 0.311933 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background --motif ACTTSTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa Finished invoke: name: fimo13 status: 0 time: 0.106658 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/background --motif CAGWCGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/YJM789--PDR8.fa Finished invoke: name: fimo14 status: 0 time: 0.113083 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--PDR8/summary.tsv Finished invoke: name: summary status: 0 time: 0.204266 Done