******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MOT1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrVIII:388769-389169 1.0000 100 chrX:526090-526190 1.0000 100 chrXIII:811183-811613 1.0000 100 chrIV:601306-601554 1.0000 100 chrXIII:653169-653599 1.0000 100 chrV:138496-138959 1.0000 100 chrXV:980566-980877 1.0000 100 chrIV:867949-868379 1.0000 100 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chrIV:83387-83724 1.0000 100 chrXIV:412722-413152 1.0000 100 chrXII:628242-628609 1.0000 100 chrXV:968180-968363 1.0000 100 chrVII:609485-609611 1.0000 100 chrXII:605167-605581 1.0000 100 chrXIII:551418-551774 1.0000 100 chrXV:677239-677669 1.0000 100 chrXI:613017-613447 1.0000 100 chrX:374268-374368 1.0000 100 chrXII:734650-734990 1.0000 100 chrXII:348534-348642 1.0000 100 chrIV:1017035-1017435 1.0000 100 chrXII:366087-366501 1.0000 100 chrVII:310581-312086 1.0000 100 chrIII:221811-222241 1.0000 100 chrXII:241789-241901 1.0000 100 chrVII:736164-736523 1.0000 100 chrVII:277954-278283 1.0000 100 chrVII:310581-312056 1.0000 100 chrX:520718-520818 1.0000 100 chrV:492239-492444 1.0000 100 chrXVI:173083-173513 1.0000 100 chrIX:316217-316565 1.0000 100 chrIII:260410-260840 1.0000 100 chrXI:326409-327033 1.0000 100 chrXV:31329-31759 1.0000 100 chrXV:988133-988563 1.0000 100 chrXIII:168696-169033 1.0000 100 chrV:176966-177343 1.0000 100 chrIV:491294-491724 1.0000 100 chrXII:48233-48663 1.0000 100 chrVIII:126999-127429 1.0000 100 chrIX:174931-175160 1.0000 100 chrXII:899081-899511 1.0000 100 chrII:477072-477426 1.0000 100 chrXIII:352938-353368 1.0000 100 chrIV:363096-363526 1.0000 100 chrXIII:272148-272578 1.0000 100 chrVII:110407-110807 1.0000 100 chrIII:227770-228204 1.0000 100 chrIV:520825-521152 1.0000 100 chrIV:1175663-1176014 1.0000 100 chrXV:622683-623113 1.0000 100 chrIV:1352374-1352669 1.0000 100 chrXI:231108-231538 1.0000 100 chrVII:123696-124126 1.0000 100 chrVII:609748-610186 1.0000 100 chrIX:68448-68878 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MOT1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MOT1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MOT1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 564 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56400 N= 564 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.280 C 0.220 G 0.220 T 0.280 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MOT1/background): A 0.295 C 0.205 G 0.205 T 0.295 ******************************************************************************** ******************************************************************************** MOTIF TAAYCNKRAGRTCMBSGGTTCGABYCCSV MEME-1 width = 29 sites = 77 llr = 1531 E-value = 5.9e-319 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMBSGGTTCGABYCCSV MEME-1 Description -------------------------------------------------------------------------------- Simplified A 168::3257252:4::2::::2a2::::3 pos.-specific C 2213721111:17533::::a::25a754 probability G :1113354265::1458a:::8:2:::43 matrix T 71:5:231:1:73:31::aa:::45:2:: bits 2.3 * * * 2.1 * * * 1.8 * ** * * 1.6 **** * * Relative 1.4 * ****** * Entropy 1.1 * * * ******* ** (28.7 bits) 0.9 * * * ******* **** 0.7 *** ****** ******** **** 0.5 ***** ***************** ***** 0.2 ***** ***************** ***** 0.0 ----------------------------- Multilevel TAATCAGAAGGTCCGGGGTTCGATTCCCC consensus CGGTGG AATACC A CC TGG sequence T T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMBSGGTTCGABYCCSV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIV:1352374-1352669 - 4 3.74e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCC TAC chrV:135289-135629 - 25 3.74e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrXIII:480508-480819 - 17 3.74e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrVII:185605-185923 - 9 3.74e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGC chrVII:876259-876582 + 59 3.74e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrVI:226583-226888 - 12 3.74e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrIX:300120-300446 - 4 3.74e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCC TAC chrXII:734650-734990 + 68 5.47e-13 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGC TAGA chrIX:183309-183652 - 19 5.47e-13 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGC TAGAGACCAC chrIX:210636-210851 + 8 5.47e-13 GTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGC TAGAGACCAT chrVII:738973-739389 + 27 5.47e-13 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXIV:569763-569998 - 46 5.47e-13 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGC TAGAGACCAT chrX:374268-374368 - 51 7.90e-13 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGC chrXIII:131696-132039 - 17 7.90e-13 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGC chrIV:568731-569144 + 29 7.90e-13 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGC chrII:405716-406171 + 19 7.90e-13 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGC chrVII:828504-828961 - 50 7.90e-13 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGC chrX:355189-355289 + 20 7.90e-13 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGC chrV:138496-138959 + 23 7.90e-13 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCA TCGTGAGTGT chrV:176966-177343 + 29 9.08e-12 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrIV:1017035-1017435 - 31 9.08e-12 CATCACGTTC TCACCGTGGAGACCGGGGTTCGACTCCCC GCTTCGGAGT chrVII:401420-401641 - 56 9.08e-12 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrVII:541697-542084 + 44 9.08e-12 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:487228-487537 - 8 9.08e-12 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCC GTATCGG chrXI:140879-141247 - 14 9.08e-12 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCC GTATCGGAGT chrVII:794289-794580 + 68 3.62e-11 GCTTCCCTTG CAAGGAAGAGGTCATCGGTTCGATTCCGG TTGC chrIV:520825-521152 + 68 4.69e-11 CTTTCGGTTT TGATCCGGACAACCCCGGTTCGAATCCGG GTAG chrVIII:134179-134515 + 58 4.69e-11 CTTTCGGTTT TGATCCGGACAACCCCGGTTCGAATCCGG GTAGGACCTT chrIV:802603-802886 - 46 4.69e-11 CTTTCGGTTT TGATCCGGACAACCCCGGTTCGAATCCGG GTAGGACCTC chrIV:645047-645257 - 60 4.69e-11 CTTTCGGTTT TGATCCGGACAACCCCGGTTCGAATCCGG GTAGGACCTT chrIX:174931-175160 + 71 5.32e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGA T chrXIV:104661-105035 + 42 5.32e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGA TTGGAAGCAT chrIII:295375-295655 + 54 5.32e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGA TTGGAAGCAT chrII:266218-266600 + 54 5.32e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGA TTGGAAGCAT chrXIV:560581-560841 - 41 5.32e-11 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGA TTGGAAGCAT chrV:61743-62097 - 29 1.11e-10 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrXVI:860226-860597 + 51 1.11e-10 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrIV:992690-993029 + 56 1.11e-10 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCGG GCTTGCGCAC chrVII:845487-845844 + 67 1.11e-10 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCGG GCTTG chrX:538425-538525 + 65 1.57e-10 GTCTCCCTCC TAAGGAGAAGACTGCGGGTTCGAGTCCCG TACGGAA chrXIII:808126-808475 - 5 3.77e-10 CTTTCGGTTC TGATCCGAACAACCCCAGTTCGAATCCGG GTGG chrXV:976334-976617 + 31 4.65e-10 GTCAGTCTCA TAATCTGAAGGTCGAGAGTTCGAACCTCC CCTGGAGCAA chrXIII:572720-573087 - 39 4.65e-10 GTCAGTCTCA TAATCTGAAGGTCGAGAGTTCGAACCTCC CCTGGAGCAC chrVII:115348-115726 + 59 8.49e-10 TTAAGCAAGG ATACCGAAATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXI:578822-579207 + 59 8.49e-10 TTAAGCAAGG ATACCGAAATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXIV:374744-375057 + 72 8.49e-10 TTCGGTCAAG TCATCTGGAGGTCCTGTGTTCGATCCACA chrXV:438512-438870 + 60 8.49e-10 TTAAGCAAGG ATACCGAAATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrIV:488637-489014 - 31 1.13e-09 GTCGCCTTTA CACGGCGAAGATCCCGAGTTCGAACCTCG GTTGGATCAG chrIV:1075340-1075710 - 6 1.24e-09 GTTGCCTTCA CACGGCAAAGGTCCCGAGTTCGATCCTCG GTTGG chrXIII:586476-586857 - 29 1.24e-09 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXIV:102573-102915 + 58 1.24e-09 GTGCGACTGT TAATCGCAAGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXV:228186-228528 + 60 1.24e-09 GTGCGACTGT TAATCGCAAGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrVII:823331-823688 + 59 1.24e-09 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXIV:632472-632808 + 45 1.24e-09 GTGCGACTGT TAATCGCAAGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrVII:412164-412519 - 12 1.24e-09 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGG GCGAAATCAA chrX:378201-378301 + 72 1.24e-09 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGG chrXV:464353-464632 + 72 1.80e-09 GAAGACAAAG CATGCGAGAGGCCCTGGGTTCAATTCCCA chrVI:101387-101547 + 24 1.80e-09 GAAGACAAAG CATGCGAGAGGCCCTGGGTTCAATTCCCA GCTCGCCCCC chrXVI:856891-857077 + 3 7.43e-09 AG CATGGGAGAGGTCTCCGGTTCGATTCCGG ACTCGTCCAT chrXIII:168696-169033 + 32 9.34e-09 TATCACTACG AAATCTTGAGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrXV:288075-288392 + 60 9.34e-09 TATCACTACG AAATCTTGAGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrVII:661599-661967 + 50 1.08e-08 GTTGCACTTG TAATGCAAAGGTCGTTAGTTCAATTCTGA CAGGTGGCAT chrVII:1004081-1004402 + 59 1.08e-08 GTTGCACTTG TAATGCAAAGGTCGTTAGTTCAATTCTGA CAGGTGGCAG chrV:492239-492444 - 70 1.45e-08 AC GAACCAGAAGATTCCAGGTTCAAGTCCTG GCGGGGAAGG chrXII:374200-374559 + 61 1.45e-08 GTCTGGCTAC GAACCAGAAGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrXV:340197-340508 - 6 1.45e-08 GTCTGGCTAC GAACCAGAAGATTCCAGGTTCAAGTCCTG GCGGG chrIV:1095241-1095608 - 5 1.55e-08 TTTGGTCAAG ATATCTGGAGGTCCTGTGTTCGATCCACA GAGT chrVII:531490-531770 + 64 2.35e-08 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCC GTCGCGGA chrX:541400-541500 + 53 2.35e-08 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrX:204587-204687 + 61 2.35e-08 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrVII:544430-544815 - 14 2.35e-08 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXII:818473-818792 + 61 3.93e-08 TGCATTCTTC CGGTGGCTGTGATCCGGGTTCGAGTCCCG GGAGGAGCTT chrVII:706970-707223 - 71 4.45e-08 C AAATCTGTTGGTCCTTAGTTCGATCCTGA GTGCGAGCTT chrIII:149771-150095 + 71 4.45e-08 GCAGGGCTCA TAACCCTGATGTCCTCGGATCGAAACCGA G chrXIII:362910-363250 + 68 1.44e-07 CACATCGTTG TGGCCGATGAAACCCTGGTTCGATTCTAG GAGA chrVII:319719-319987 + 12 1.44e-07 CACATCGTTG TGGCCGATGAAACCCTGGTTCGATTCTAG GAGATGGCAT chrXI:313301-313593 - 13 1.44e-07 CACATCGTTG TGGCCGATGAAACCCTGGTTCGATTCTAG GAGATGGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMBSGGTTCGABYCCSV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1352374-1352669 3.7e-13 3_[-1]_68 chrV:135289-135629 3.7e-13 24_[-1]_47 chrXIII:480508-480819 3.7e-13 16_[-1]_55 chrVII:185605-185923 3.7e-13 8_[-1]_63 chrVII:876259-876582 3.7e-13 58_[+1]_13 chrVI:226583-226888 3.7e-13 11_[-1]_60 chrIX:300120-300446 3.7e-13 3_[-1]_68 chrXII:734650-734990 5.5e-13 67_[+1]_4 chrIX:183309-183652 5.5e-13 18_[-1]_53 chrIX:210636-210851 5.5e-13 7_[+1]_64 chrVII:738973-739389 5.5e-13 26_[+1]_45 chrXIV:569763-569998 5.5e-13 45_[-1]_26 chrX:374268-374368 7.9e-13 50_[-1]_21 chrXIII:131696-132039 7.9e-13 16_[-1]_55 chrIV:568731-569144 7.9e-13 28_[+1]_43 chrII:405716-406171 7.9e-13 18_[+1]_53 chrVII:828504-828961 7.9e-13 49_[-1]_22 chrX:355189-355289 7.9e-13 19_[+1]_52 chrV:138496-138959 7.9e-13 22_[+1]_49 chrV:176966-177343 9.1e-12 28_[+1]_43 chrIV:1017035-1017435 9.1e-12 30_[-1]_41 chrVII:401420-401641 9.1e-12 55_[-1]_16 chrVII:541697-542084 9.1e-12 43_[+1]_28 chrV:487228-487537 9.1e-12 7_[-1]_64 chrXI:140879-141247 9.1e-12 13_[-1]_58 chrVII:794289-794580 3.6e-11 67_[+1]_4 chrIV:520825-521152 4.7e-11 67_[+1]_4 chrVIII:134179-134515 4.7e-11 57_[+1]_14 chrIV:802603-802886 4.7e-11 45_[-1]_26 chrIV:645047-645257 4.7e-11 59_[-1]_12 chrIX:174931-175160 5.3e-11 70_[+1]_1 chrXIV:104661-105035 5.3e-11 41_[+1]_30 chrIII:295375-295655 5.3e-11 53_[+1]_18 chrII:266218-266600 5.3e-11 53_[+1]_18 chrXIV:560581-560841 5.3e-11 40_[-1]_31 chrV:61743-62097 1.1e-10 28_[-1]_43 chrXVI:860226-860597 1.1e-10 50_[+1]_21 chrIV:992690-993029 1.1e-10 55_[+1]_16 chrVII:845487-845844 1.1e-10 66_[+1]_5 chrX:538425-538525 1.6e-10 64_[+1]_7 chrXIII:808126-808475 3.8e-10 4_[-1]_67 chrXV:976334-976617 4.6e-10 30_[+1]_41 chrXIII:572720-573087 4.6e-10 38_[-1]_33 chrVII:115348-115726 8.5e-10 58_[+1]_13 chrXI:578822-579207 8.5e-10 58_[+1]_13 chrXIV:374744-375057 8.5e-10 71_[+1] chrXV:438512-438870 8.5e-10 59_[+1]_12 chrIV:488637-489014 1.1e-09 30_[-1]_41 chrIV:1075340-1075710 1.2e-09 5_[-1]_66 chrXIII:586476-586857 1.2e-09 28_[-1]_43 chrXIV:102573-102915 1.2e-09 57_[+1]_14 chrXV:228186-228528 1.2e-09 59_[+1]_12 chrVII:823331-823688 1.2e-09 58_[+1]_13 chrXIV:632472-632808 1.2e-09 44_[+1]_27 chrVII:412164-412519 1.2e-09 11_[-1]_60 chrX:378201-378301 1.2e-09 71_[+1] chrXV:464353-464632 1.8e-09 71_[+1] chrVI:101387-101547 1.8e-09 23_[+1]_48 chrXVI:856891-857077 7.4e-09 2_[+1]_69 chrXIII:168696-169033 9.3e-09 31_[+1]_40 chrXV:288075-288392 9.3e-09 59_[+1]_12 chrVII:661599-661967 1.1e-08 49_[+1]_22 chrVII:1004081-1004402 1.1e-08 58_[+1]_13 chrV:492239-492444 1.4e-08 69_[-1]_2 chrXII:374200-374559 1.4e-08 60_[+1]_11 chrXV:340197-340508 1.4e-08 5_[-1]_66 chrIV:1095241-1095608 1.6e-08 4_[-1]_67 chrVII:531490-531770 2.3e-08 63_[+1]_8 chrX:541400-541500 2.3e-08 52_[+1]_19 chrX:204587-204687 2.3e-08 60_[+1]_11 chrVII:544430-544815 2.3e-08 13_[-1]_58 chrXII:818473-818792 3.9e-08 60_[+1]_11 chrVII:706970-707223 4.5e-08 70_[-1]_1 chrIII:149771-150095 4.5e-08 70_[+1]_1 chrXIII:362910-363250 1.4e-07 67_[+1]_4 chrVII:319719-319987 1.4e-07 11_[+1]_60 chrXI:313301-313593 1.4e-07 12_[-1]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMBSGGTTCGABYCCSV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAAYCNKRAGRTCMBSGGTTCGABYCCSV width=29 seqs=77 chrIV:1352374-1352669 ( 4) TAATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrV:135289-135629 ( 25) TAATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrXIII:480508-480819 ( 17) TAATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrVII:185605-185923 ( 9) TAATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrVII:876259-876582 ( 59) TAATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrVI:226583-226888 ( 12) TAATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrIX:300120-300446 ( 4) TAATCATAAGGTTAGGGGTTCGAGCCCCC 1 chrXII:734650-734990 ( 68) TAACGCGGGGATCAGCGGTTCGATCCCGC 1 chrIX:183309-183652 ( 19) TAACGCGGGGATCAGCGGTTCGATCCCGC 1 chrIX:210636-210851 ( 8) TAACGCGGGGATCAGCGGTTCGATCCCGC 1 chrVII:738973-739389 ( 27) TAACGCGGGGATCAGCGGTTCGATCCCGC 1 chrXIV:569763-569998 ( 46) TAACGCGGGGATCAGCGGTTCGATCCCGC 1 chrX:374268-374368 ( 51) TAATCAGAAGATTATGGGTTCGACCCCCA 1 chrXIII:131696-132039 ( 17) TAATCAGAAGATTATGGGTTCGACCCCCA 1 chrIV:568731-569144 ( 29) TAATCAGAAGATTATGGGTTCGACCCCCA 1 chrII:405716-406171 ( 19) TAATCAGAAGATTATGGGTTCGACCCCCA 1 chrVII:828504-828961 ( 50) TAATCAGAAGATTATGGGTTCGACCCCCA 1 chrX:355189-355289 ( 20) TAATCAGAAGATTATGGGTTCGACCCCCA 1 chrV:138496-138959 ( 23) TAATCAGAAGATTATGGGTTCGACCCCCA 1 chrV:176966-177343 ( 29) TCACCGTGGAGACCGGGGTTCGACTCCCC 1 chrIV:1017035-1017435 ( 31) TCACCGTGGAGACCGGGGTTCGACTCCCC 1 chrVII:401420-401641 ( 56) TCACCGTGGAGACCGGGGTTCGACTCCCC 1 chrVII:541697-542084 ( 44) TCACCGTGGAGACCGGGGTTCGACTCCCC 1 chrV:487228-487537 ( 8) TCACCGTGGAGACCGGGGTTCGACTCCCC 1 chrXI:140879-141247 ( 14) TCACCGTGGAGACCGGGGTTCGACTCCCC 1 chrVII:794289-794580 ( 68) CAAGGAAGAGGTCATCGGTTCGATTCCGG 1 chrIV:520825-521152 ( 68) TGATCCGGACAACCCCGGTTCGAATCCGG 1 chrVIII:134179-134515 ( 58) TGATCCGGACAACCCCGGTTCGAATCCGG 1 chrIV:802603-802886 ( 46) TGATCCGGACAACCCCGGTTCGAATCCGG 1 chrIV:645047-645257 ( 60) TGATCCGGACAACCCCGGTTCGAATCCGG 1 chrIX:174931-175160 ( 71) TAATGTGGAGATCATCGGTTCAAATCCGA 1 chrXIV:104661-105035 ( 42) TAATGTGGAGATCATCGGTTCAAATCCGA 1 chrIII:295375-295655 ( 54) TAATGTGGAGATCATCGGTTCAAATCCGA 1 chrII:266218-266600 ( 54) TAATGTGGAGATCATCGGTTCAAATCCGA 1 chrXIV:560581-560841 ( 41) TAATGTGGAGATCATCGGTTCAAATCCGA 1 chrV:61743-62097 ( 29) CCATCGTTGGGCCCCCGGTTCGATTCCGG 1 chrXVI:860226-860597 ( 51) CCATCGTTGGGCCCCCGGTTCGATTCCGG 1 chrIV:992690-993029 ( 56) CCATCGTTGGGCCCCCGGTTCGATTCCGG 1 chrVII:845487-845844 ( 67) CCATCGTTGGGCCCCCGGTTCGATTCCGG 1 chrX:538425-538525 ( 65) TAAGGAGAAGACTGCGGGTTCGAGTCCCG 1 chrXIII:808126-808475 ( 5) TGATCCGAACAACCCCAGTTCGAATCCGG 1 chrXV:976334-976617 ( 31) TAATCTGAAGGTCGAGAGTTCGAACCTCC 1 chrXIII:572720-573087 ( 39) TAATCTGAAGGTCGAGAGTTCGAACCTCC 1 chrVII:115348-115726 ( 59) ATACCGAAATGTCAGGGGTTCGAGCCCCC 1 chrXI:578822-579207 ( 59) ATACCGAAATGTCAGGGGTTCGAGCCCCC 1 chrXIV:374744-375057 ( 72) TCATCTGGAGGTCCTGTGTTCGATCCACA 1 chrXV:438512-438870 ( 60) ATACCGAAATGTCAGGGGTTCGAGCCCCC 1 chrIV:488637-489014 ( 31) CACGGCGAAGATCCCGAGTTCGAACCTCG 1 chrIV:1075340-1075710 ( 6) CACGGCAAAGGTCCCGAGTTCGATCCTCG 1 chrXIII:586476-586857 ( 29) CACGCAGAACGTCCCCAGTTCGATCCTGG 1 chrXIV:102573-102915 ( 58) TAATCGCAAGATCGTGAGTTCAACCCTCA 1 chrXV:228186-228528 ( 60) TAATCGCAAGATCGTGAGTTCAACCCTCA 1 chrVII:823331-823688 ( 59) CACGCAGAACGTCCCCAGTTCGATCCTGG 1 chrXIV:632472-632808 ( 45) TAATCGCAAGATCGTGAGTTCAACCCTCA 1 chrVII:412164-412519 ( 12) CACGCAGAACGTCCCCAGTTCGATCCTGG 1 chrX:378201-378301 ( 72) CACGCAGAACGTCCCCAGTTCGATCCTGG 1 chrXV:464353-464632 ( 72) CATGCGAGAGGCCCTGGGTTCAATTCCCA 1 chrVI:101387-101547 ( 24) CATGCGAGAGGCCCTGGGTTCAATTCCCA 1 chrXVI:856891-857077 ( 3) CATGGGAGAGGTCTCCGGTTCGATTCCGG 1 chrXIII:168696-169033 ( 32) AAATCTTGAGATCGGGCGTTCGACTCGCC 1 chrXV:288075-288392 ( 60) AAATCTTGAGATCGGGCGTTCGACTCGCC 1 chrVII:661599-661967 ( 50) TAATGCAAAGGTCGTTAGTTCAATTCTGA 1 chrVII:1004081-1004402 ( 59) TAATGCAAAGGTCGTTAGTTCAATTCTGA 1 chrV:492239-492444 ( 70) GAACCAGAAGATTCCAGGTTCAAGTCCTG 1 chrXII:374200-374559 ( 61) GAACCAGAAGATTCCAGGTTCAAGTCCTG 1 chrXV:340197-340508 ( 6) GAACCAGAAGATTCCAGGTTCAAGTCCTG 1 chrIV:1095241-1095608 ( 5) ATATCTGGAGGTCCTGTGTTCGATCCACA 1 chrVII:531490-531770 ( 64) TCGCGTGCCAGATCGGGGTTCAATTCCCC 1 chrX:541400-541500 ( 53) TCGCGTGCCAGATCGGGGTTCAATTCCCC 1 chrX:204587-204687 ( 61) TCGCGTGCCAGATCGGGGTTCAATTCCCC 1 chrVII:544430-544815 ( 14) TCGCGTGCCAGATCGGGGTTCAATTCCCC 1 chrXII:818473-818792 ( 61) CGGTGGCTGTGATCCGGGTTCGAGTCCCG 1 chrVII:706970-707223 ( 71) AAATCTGTTGGTCCTTAGTTCGATCCTGA 1 chrIII:149771-150095 ( 71) TAACCCTGATGTCCTCGGATCGAAACCGA 1 chrXIII:362910-363250 ( 68) TGGCCGATGAAACCCTGGTTCGATTCTAG 1 chrVII:319719-319987 ( 12) TGGCCGATGAAACCCTGGTTCGATTCTAG 1 chrXI:313301-313593 ( 13) TGGCCGATGAAACCCTGGTTCGATTCTAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMBSGGTTCGABYCCSV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 40608 bayes= 8.42509 E= 5.9e-319 -170 -7 -240 120 111 -7 -81 -250 140 -140 -98 -292 -1291 66 -52 85 -1291 180 48 -1291 2 -7 54 -50 -80 -198 134 -18 62 -198 88 -133 122 -198 27 -450 -80 -81 166 -218 62 -1291 141 -1291 -26 -117 -1291 117 -1291 177 -1291 2 30 127 -66 -450 -350 60 77 8 -292 72 141 -192 -60 -298 188 -350 -1291 -1291 228 -1291 -450 -1291 -1291 174 -1291 -1291 -1291 176 -1291 228 -1291 -1291 -26 -1291 188 -1291 176 -1291 -1291 -1291 -70 19 -7 40 -450 119 -1291 82 -1291 228 -1291 -1291 -350 183 -298 -42 -292 141 88 -292 2 88 66 -1291 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMBSGGTTCGABYCCSV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 77 E= 5.9e-319 0.090909 0.194805 0.038961 0.675325 0.636364 0.194805 0.116883 0.051948 0.779221 0.077922 0.103896 0.038961 0.000000 0.324675 0.142857 0.532468 0.000000 0.714286 0.285714 0.000000 0.298701 0.194805 0.298701 0.207792 0.168831 0.051948 0.519481 0.259740 0.454545 0.051948 0.376623 0.116883 0.688312 0.051948 0.246753 0.012987 0.168831 0.116883 0.649351 0.064935 0.454545 0.000000 0.545455 0.000000 0.246753 0.090909 0.000000 0.662338 0.000000 0.701299 0.000000 0.298701 0.363636 0.493506 0.129870 0.012987 0.025974 0.311688 0.350649 0.311688 0.038961 0.337662 0.545455 0.077922 0.194805 0.025974 0.753247 0.025974 0.000000 0.000000 1.000000 0.000000 0.012987 0.000000 0.000000 0.987013 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.246753 0.000000 0.753247 0.000000 1.000000 0.000000 0.000000 0.000000 0.181818 0.233766 0.194805 0.389610 0.012987 0.467532 0.000000 0.519481 0.000000 1.000000 0.000000 0.000000 0.025974 0.727273 0.025974 0.220779 0.038961 0.545455 0.376623 0.038961 0.298701 0.376623 0.324675 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAYCNKRAGRTCMBSGGTTCGABYCCSV MEME-1 regular expression -------------------------------------------------------------------------------- TAA[TC][CG][AGT][GT][AG][AG]G[GA][TA][CT][CA][GCT][GC]GGTTC[GA]A[TC][TC]C[CT][CG][CGA] -------------------------------------------------------------------------------- Time 308.19 secs. ******************************************************************************** ******************************************************************************** MOTIF GCYCAGTKGGTARRGCGHCAG MEME-2 width = 21 sites = 47 llr = 876 E-value = 6.4e-157 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCYCAGTKGGTARRGCGHCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::1a2:1::1a44:::225: pos.-specific C :a47:::1::1:12:a:3612 probability G a:22:8:3a71:64a:9::17 matrix T ::4:::a5:37::::::422: bits 2.3 ** * * 2.1 ** * ** 1.8 ** * * * *** 1.6 ** * * * * *** Relative 1.4 ** *** ** * *** * Entropy 1.1 ** *** ** * *** * (26.9 bits) 0.9 ** **** ** ** *** * 0.7 ******* ** ****** * 0.5 ******* *********** * 0.2 ********************* 0.0 --------------------- Multilevel GCCCAGTTGGTAGAGCGTCAG consensus T A G T AG CATC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYCAGTKGGTARRGCGHCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrII:36236-36615 + 32 1.35e-11 AGCGGATTTA GCTCAGTTGGGAGAGCGCCAG ACTGAAGAAA chrXIII:352135-352464 + 40 1.35e-11 AGCGGATTTA GCTCAGTTGGGAGAGCGCCAG ACTGAAGAAA chrVI:157845-158169 - 21 1.35e-11 AGCGGATTTA GCTCAGTTGGGAGAGCGCCAG ACTGAAGAAA chrIV:1095241-1095608 - 58 1.35e-11 AGCGGACTTA GCTCAGTTGGGAGAGCGCCAG ACTGAAGAAA chrVIII:358413-358723 - 22 1.35e-11 AGCGGATTTA GCTCAGTTGGGAGAGCGCCAG ACTGAAGAAA chrXIV:374744-375057 + 28 1.35e-11 AGCGGACTTA GCTCAGTTGGGAGAGCGCCAG ACTGAAGAAA chrVIII:237740-238077 - 52 1.35e-11 AGCGGATTTA GCTCAGTTGGGAGAGCGCCAG ACTGAAGAAA chrVII:115348-115726 + 10 1.08e-10 TCCTTGTTA GCTCAGTTGGTAGAGCGTTCG GCTTTTAAGC chrXI:578822-579207 + 10 1.08e-10 TCCTTGTTA GCTCAGTTGGTAGAGCGTTCG GCTTTTAAGC chrIV:359431-359763 + 39 1.08e-10 ATCCTTGTTA GCTCAGTTGGTAGAGCGTTCG GCTTTTAAGC chrXII:875195-875557 + 59 1.08e-10 ATCCTTGTTA GCTCAGTTGGTAGAGCGTTCG GCTTTTAAGC chrXV:438512-438870 + 11 1.08e-10 ATCCTTGTTA GCTCAGTTGGTAGAGCGTTCG GCTTTTAAGC chrIX:174931-175160 + 45 2.22e-10 AGCTTCTATG GCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrXIV:104661-105035 + 16 2.22e-10 AGCTTCTATG GCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrXV:113672-113947 + 52 2.22e-10 AGCTTCTATG GCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrIII:295375-295655 + 28 2.22e-10 AGCTTCTATG GCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrII:266218-266600 + 28 2.22e-10 TGCTTCTATG GCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrXV:353935-354283 - 25 2.22e-10 TGCTTCTATG GCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrXIV:560581-560841 - 75 2.22e-10 CTATG GCCAAGTTGGTAAGGCGCCAC ACTAGTAATG chrIX:248660-249094 + 32 3.72e-10 AGGCACTATG GCCGAGTGGTTAAGGCGACAG ACTTGAAATC chrIV:1175663-1176014 + 50 4.79e-10 AGCTTCAGTA GCTCAGTAGGAAGAGCGTCAG TCTCATAATC chrX:390932-391032 - 19 4.79e-10 TGCTTCAGTA GCTCAGTAGGAAGAGCGTCAG TCTCATAATC chrXV:976334-976617 + 5 4.79e-10 AGTA GCTCAGTAGGAAGAGCGTCAG TCTCATAATC chrX:422771-422871 + 50 4.79e-10 TGCTTCAGTA GCTCAGTAGGAAGAGCGTCAG TCTCATAATC chrXIII:572720-573087 - 73 4.79e-10 TTCAGTA GCTCAGTAGGAAGAGCGTCAG TCTCATAATC chrVII:794289-794580 + 42 1.31e-09 CGGGCACATG GCGCAGTTGGTAGCGCGCTTC CCTTGCAAGG chrIV:1305480-1305813 + 43 1.45e-09 AGGCAACTTG GCCGAGTGGTTAAGGCGAAAG ATTAGAAATC chrX:523901-524001 - 36 1.45e-09 AGGCAACTTG GCCGAGTGGTTAAGGCGAAAG ATTAGAAATC chrXII:167850-168188 - 27 1.45e-09 TGGCAACTTG GCCGAGTGGTTAAGGCGAAAG ATTAGAAATC chrIV:437624-437980 + 29 1.45e-09 AGGCAACTTG GCCGAGTGGTTAAGGCGAAAG ATTAGAAATC chrIV:1352374-1352669 - 38 4.43e-09 AGCCTTGTTG GCGCAATCGGTAGCGCGTATG ACTCTTAATC chrV:135289-135629 - 59 4.43e-09 AGCCTTGTTG GCGCAATCGGTAGCGCGTATG ACTCTTAATC chrXIII:480508-480819 - 51 4.43e-09 AGCCTTGTTG GCGCAATCGGTAGCGCGTATG ACTCTTAATC chrVII:185605-185923 - 43 4.43e-09 AGCCTTGTTG GCGCAATCGGTAGCGCGTATG ACTCTTAATC chrVII:876259-876582 + 33 4.43e-09 AGCCTTGTTG GCGCAATCGGTAGCGCGTATG ACTCTTAATC chrVI:226583-226888 - 46 4.43e-09 TGCCTTGTTG GCGCAATCGGTAGCGCGTATG ACTCTTAATC chrIX:300120-300446 - 38 4.43e-09 AGCCTTGTTG GCGCAATCGGTAGCGCGTATG ACTCTTAATC chrIII:227770-228204 + 14 8.37e-09 TGGCACTATG GCCGAGTGGTTAAGGCGAGAG ACTCGAATGG chrIV:1150702-1151098 - 62 1.48e-08 AGTCCCAGTG GCCGAGTGGTTAAGGCGATGC CTGCTATTTC chrXV:274490-274885 + 45 1.48e-08 TGTCCCAGTG GCCGAGTGGTTAAGGCGATGC CCTGCTATTT chrVI:191449-191755 - 32 1.48e-08 TGTCCCAGTG GCCGAGTGGTTAAGGCGATGC CCTGCTATTT chrXII:374200-374559 + 35 1.58e-08 GTTCCTCGTG GCCCAATGGTCACGGCGTCTG GCTACGAACC chrX:233784-233884 + 68 1.58e-08 GTTCCTCGTG GCCCAATGGTCACGGCGTCTG GCTACGAACC chrXV:340197-340508 - 40 1.58e-08 GTTCCTCGTG GCCCAATGGTCACGGCGTCTG GCTACGAACC chrXII:734650-734990 + 41 1.08e-07 TGGTCTCTTG GCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrIX:183309-183652 - 54 1.08e-07 TGGTCTCTTG GCCCAGTTGGTTAAGGCACCG TGCTAATAAC chrXII:605167-605581 - 79 1.12e-07 A GCTCAGTGGTTAGAGCTTCGT GCTTATAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYCAGTKGGTARRGCGHCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:36236-36615 1.3e-11 31_[+2]_48 chrXIII:352135-352464 1.3e-11 39_[+2]_40 chrVI:157845-158169 1.3e-11 20_[-2]_59 chrIV:1095241-1095608 1.3e-11 57_[-2]_22 chrVIII:358413-358723 1.3e-11 21_[-2]_58 chrXIV:374744-375057 1.3e-11 27_[+2]_52 chrVIII:237740-238077 1.3e-11 51_[-2]_28 chrVII:115348-115726 1.1e-10 9_[+2]_70 chrXI:578822-579207 1.1e-10 9_[+2]_70 chrIV:359431-359763 1.1e-10 38_[+2]_41 chrXII:875195-875557 1.1e-10 58_[+2]_21 chrXV:438512-438870 1.1e-10 10_[+2]_69 chrIX:174931-175160 2.2e-10 44_[+2]_35 chrXIV:104661-105035 2.2e-10 15_[+2]_64 chrXV:113672-113947 2.2e-10 51_[+2]_28 chrIII:295375-295655 2.2e-10 27_[+2]_52 chrII:266218-266600 2.2e-10 27_[+2]_52 chrXV:353935-354283 2.2e-10 24_[-2]_55 chrXIV:560581-560841 2.2e-10 74_[-2]_5 chrIX:248660-249094 3.7e-10 31_[+2]_48 chrIV:1175663-1176014 4.8e-10 49_[+2]_30 chrX:390932-391032 4.8e-10 18_[-2]_61 chrXV:976334-976617 4.8e-10 4_[+2]_75 chrX:422771-422871 4.8e-10 49_[+2]_30 chrXIII:572720-573087 4.8e-10 72_[-2]_7 chrVII:794289-794580 1.3e-09 41_[+2]_38 chrIV:1305480-1305813 1.5e-09 42_[+2]_37 chrX:523901-524001 1.5e-09 35_[-2]_44 chrXII:167850-168188 1.5e-09 26_[-2]_53 chrIV:437624-437980 1.5e-09 28_[+2]_51 chrIV:1352374-1352669 4.4e-09 37_[-2]_42 chrV:135289-135629 4.4e-09 58_[-2]_21 chrXIII:480508-480819 4.4e-09 50_[-2]_29 chrVII:185605-185923 4.4e-09 42_[-2]_37 chrVII:876259-876582 4.4e-09 32_[+2]_47 chrVI:226583-226888 4.4e-09 45_[-2]_34 chrIX:300120-300446 4.4e-09 37_[-2]_42 chrIII:227770-228204 8.4e-09 13_[+2]_66 chrIV:1150702-1151098 1.5e-08 61_[-2]_18 chrXV:274490-274885 1.5e-08 44_[+2]_35 chrVI:191449-191755 1.5e-08 31_[-2]_48 chrXII:374200-374559 1.6e-08 34_[+2]_45 chrX:233784-233884 1.6e-08 67_[+2]_12 chrXV:340197-340508 1.6e-08 39_[-2]_40 chrXII:734650-734990 1.1e-07 40_[+2]_39 chrIX:183309-183652 1.1e-07 53_[-2]_26 chrXII:605167-605581 1.1e-07 78_[-2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYCAGTKGGTARRGCGHCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCYCAGTKGGTARRGCGHCAG width=21 seqs=47 chrII:36236-36615 ( 32) GCTCAGTTGGGAGAGCGCCAG 1 chrXIII:352135-352464 ( 40) GCTCAGTTGGGAGAGCGCCAG 1 chrVI:157845-158169 ( 21) GCTCAGTTGGGAGAGCGCCAG 1 chrIV:1095241-1095608 ( 58) GCTCAGTTGGGAGAGCGCCAG 1 chrVIII:358413-358723 ( 22) GCTCAGTTGGGAGAGCGCCAG 1 chrXIV:374744-375057 ( 28) GCTCAGTTGGGAGAGCGCCAG 1 chrVIII:237740-238077 ( 52) GCTCAGTTGGGAGAGCGCCAG 1 chrVII:115348-115726 ( 10) GCTCAGTTGGTAGAGCGTTCG 1 chrXI:578822-579207 ( 10) GCTCAGTTGGTAGAGCGTTCG 1 chrIV:359431-359763 ( 39) GCTCAGTTGGTAGAGCGTTCG 1 chrXII:875195-875557 ( 59) GCTCAGTTGGTAGAGCGTTCG 1 chrXV:438512-438870 ( 11) GCTCAGTTGGTAGAGCGTTCG 1 chrIX:174931-175160 ( 45) GCCAAGTTGGTAAGGCGCCAC 1 chrXIV:104661-105035 ( 16) GCCAAGTTGGTAAGGCGCCAC 1 chrXV:113672-113947 ( 52) GCCAAGTTGGTAAGGCGCCAC 1 chrIII:295375-295655 ( 28) GCCAAGTTGGTAAGGCGCCAC 1 chrII:266218-266600 ( 28) GCCAAGTTGGTAAGGCGCCAC 1 chrXV:353935-354283 ( 25) GCCAAGTTGGTAAGGCGCCAC 1 chrXIV:560581-560841 ( 75) GCCAAGTTGGTAAGGCGCCAC 1 chrIX:248660-249094 ( 32) GCCGAGTGGTTAAGGCGACAG 1 chrIV:1175663-1176014 ( 50) GCTCAGTAGGAAGAGCGTCAG 1 chrX:390932-391032 ( 19) GCTCAGTAGGAAGAGCGTCAG 1 chrXV:976334-976617 ( 5) GCTCAGTAGGAAGAGCGTCAG 1 chrX:422771-422871 ( 50) GCTCAGTAGGAAGAGCGTCAG 1 chrXIII:572720-573087 ( 73) GCTCAGTAGGAAGAGCGTCAG 1 chrVII:794289-794580 ( 42) GCGCAGTTGGTAGCGCGCTTC 1 chrIV:1305480-1305813 ( 43) GCCGAGTGGTTAAGGCGAAAG 1 chrX:523901-524001 ( 36) GCCGAGTGGTTAAGGCGAAAG 1 chrXII:167850-168188 ( 27) GCCGAGTGGTTAAGGCGAAAG 1 chrIV:437624-437980 ( 29) GCCGAGTGGTTAAGGCGAAAG 1 chrIV:1352374-1352669 ( 38) GCGCAATCGGTAGCGCGTATG 1 chrV:135289-135629 ( 59) GCGCAATCGGTAGCGCGTATG 1 chrXIII:480508-480819 ( 51) GCGCAATCGGTAGCGCGTATG 1 chrVII:185605-185923 ( 43) GCGCAATCGGTAGCGCGTATG 1 chrVII:876259-876582 ( 33) GCGCAATCGGTAGCGCGTATG 1 chrVI:226583-226888 ( 46) GCGCAATCGGTAGCGCGTATG 1 chrIX:300120-300446 ( 38) GCGCAATCGGTAGCGCGTATG 1 chrIII:227770-228204 ( 14) GCCGAGTGGTTAAGGCGAGAG 1 chrIV:1150702-1151098 ( 62) GCCGAGTGGTTAAGGCGATGC 1 chrXV:274490-274885 ( 45) GCCGAGTGGTTAAGGCGATGC 1 chrVI:191449-191755 ( 32) GCCGAGTGGTTAAGGCGATGC 1 chrXII:374200-374559 ( 35) GCCCAATGGTCACGGCGTCTG 1 chrX:233784-233884 ( 68) GCCCAATGGTCACGGCGTCTG 1 chrXV:340197-340508 ( 40) GCCCAATGGTCACGGCGTCTG 1 chrXII:734650-734990 ( 41) GCCCAGTTGGTTAAGGCACCG 1 chrIX:183309-183652 ( 54) GCCCAGTTGGTTAAGGCACCG 1 chrXII:605167-605581 ( 79) GCTCAGTGGTTAGAGCTTCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYCAGTKGGTARRGCGHCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 45120 bayes= 11.4791 E= 6.4e-157 -1220 -1220 228 -1220 -1220 228 -1220 -1220 -1220 112 -27 38 -98 168 -10 -1220 176 -1220 -1220 -1220 -47 -1220 194 -1220 -1220 -1220 -1220 176 -147 -46 43 67 -1220 -1220 228 -1220 -1220 -1220 182 -9 -147 -168 -46 121 170 -1220 -1220 -279 38 -168 143 -1220 53 -27 98 -1220 -1220 -1220 228 -1220 -1220 222 -227 -1220 -1220 -227 219 -379 -33 64 -1220 60 -33 143 -327 -62 85 -46 -127 -33 -1220 19 186 -379 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYCAGTKGGTARRGCGHCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 47 E= 6.4e-157 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.446809 0.170213 0.382979 0.148936 0.659574 0.191489 0.000000 1.000000 0.000000 0.000000 0.000000 0.212766 0.000000 0.787234 0.000000 0.000000 0.000000 0.000000 1.000000 0.106383 0.148936 0.276596 0.468085 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.723404 0.276596 0.106383 0.063830 0.148936 0.680851 0.957447 0.000000 0.000000 0.042553 0.382979 0.063830 0.553191 0.000000 0.425532 0.170213 0.404255 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.957447 0.042553 0.000000 0.000000 0.042553 0.936170 0.021277 0.234043 0.319149 0.000000 0.446809 0.234043 0.553191 0.021277 0.191489 0.531915 0.148936 0.085106 0.234043 0.000000 0.234043 0.744681 0.021277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYCAGTKGGTARRGCGHCAG MEME-2 regular expression -------------------------------------------------------------------------------- GC[CT]CA[GA]T[TG]G[GT]TA[GA][AG]GCG[TCA][CA][AT][GC] -------------------------------------------------------------------------------- Time 585.80 secs. ******************************************************************************** ******************************************************************************** MOTIF TDACCAYTAVACYAHNNVVSC MEME-3 width = 21 sites = 61 llr = 881 E-value = 9.9e-111 ******************************************************************************** -------------------------------------------------------------------------------- Motif TDACCAYTAVACYAHNNVVSC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 247::8::948::a24324:3 pos.-specific C ::1a9:6:13:a5:4233247 probability G :32:12:::32::::22446: matrix T 73::::4a::::5:4231::: bits 2.3 * * 2.1 * * 1.8 ** * * * 1.6 ** * * * Relative 1.4 ** * * * Entropy 1.1 ****** ** * ** (20.8 bits) 0.9 ****** **** ** 0.7 * ******* **** ** 0.5 * ******* **** **** 0.2 *************** **** 0.0 --------------------- Multilevel TAACCACTAAACTATAAGAGC consensus AT GT C C CGCCGCA sequence G G ACTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDACCAYTAVACYAHNNVVSC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIV:83387-83724 - 43 1.15e-09 ACGTTGGATT TTACCACTAAACCACTTGCGC TAAGTGAACT chrVII:930903-931165 + 19 1.15e-09 ACGTTGGATT TTACCACTAAACCACTTGCGC TTACTGATTA chrV:61743-62097 + 70 1.15e-09 ACGTTGGATT TTACCACTAAACCACTTGCGC TTACTATTTG chrXV:282019-282327 - 41 1.15e-09 ACGTTGGATT TTACCACTAAACCACTTGCGC GCTTTCATGT chrXV:226507-226853 + 31 1.15e-09 ACGTTGGATT TTACCACTAAACCACTTGCGC TGAATTTCTT chrXVI:860226-860597 - 18 1.15e-09 ACGTTGGATT TTACCACTAAACCACTTGCGC TTGTTATTTA chrVI:162075-162387 - 47 1.15e-09 ACGTTGGATT TTACCACTAAACCACTTGCGC TTGTTTTCTT chrIV:992690-993029 - 23 1.15e-09 ACGTTGGATT TTACCACTAAACCACTTGCGC TCACAATTGT chrVII:845487-845844 - 34 1.15e-09 ACGTTGGATT TTACCACTAAACCACTTGCGC TTGTTATTTA chrIV:520825-521152 - 34 1.48e-09 CCGAAAGTGA TAACCACTACACTATAGGACC CTAAAATGGA chrVIII:134179-134515 - 24 1.48e-09 CCGAAAGTGA TAACCACTACACTATAGGACC GGAACTTACT chrIII:168200-168559 + 23 1.48e-09 CCGAAAGTGA TAACCACTACACTATAGGACC AGGACTTCTT chrXIII:808126-808475 + 47 1.48e-09 CCGAAAGTGA TAACCACTACACTATAGGACC TTTTTCTTCT chrVII:779470-779770 - 46 2.97e-09 GGTGGGATGA TAACCACTACACTAACCGCCC GGGGTTAACT chrXIII:195991-196301 + 54 3.67e-09 AGCGAGAATC ATACCACTAGACCACACGCCC TTGTGAACTT chrXV:464353-464632 - 8 3.67e-09 AGCGAGAATC ATACCACTAGACCACACGCCC TTGTTAA chrVIII:388769-389169 + 56 3.67e-09 AGCGAGAATC ATACCACTAGACCACACGCCC ATGTATCTGT chrII:350692-350969 - 47 6.58e-09 CCGAAAGTGA TAACCACTACACTATAAAACC CTTTTATTGA chrVII:736164-736523 - 47 2.40e-08 GTCAGACGCG TTGCCATTACGCCACGCGAGC TATTGAAATT chrXIII:131696-132039 + 59 2.40e-08 GTCAGACGCG TTGCCATTACGCCACGCGAGC TAAATTTCTT chrXIII:747796-748115 + 38 2.40e-08 GTCAGACGCG TTGCCATTACGCCACGCGAGC TAGTCATATG chrX:374268-374368 + 11 2.76e-08 GCGCCCATTC TGACCATTAAACTATCACGGA AGAAACAAAG chrIX:324220-324547 + 21 2.76e-08 GCGCCCATTC TGACCATTAAACTATCACGGA ATATTAGATG chrVII:531490-531770 - 30 2.76e-08 GCGCCCATTC TGACCATTAAACTATCACGGA AGTAACTCGA chrX:541400-541500 - 19 2.76e-08 GCGCCCATTC TGACCATTAAACTATCACGGA TTTTCTTTCT chrIV:568731-569144 - 77 2.76e-08 TTC TGACCATTAAACTATCACGGA AGAAACAAAG chrX:204587-204687 - 27 2.76e-08 GCGCCCATTC TGACCATTAAACTATCACGGA TTTTTATGTT chrII:405716-406171 - 67 2.76e-08 GCGCCCATTC TGACCATTAAACTATCACGGA AGAAACAAAG chrVII:544430-544815 + 56 2.76e-08 GCGCCCATTC TGACCATTAAACTATCACGGA AGAAATATCT chrXII:426944-427314 - 53 2.76e-08 GCGCCCATTC TGACCATTAAACTATCACGGA TAAGAAACAC chrX:355189-355289 - 68 2.76e-08 GCGCCCATTC TGACCATTAAACTATCACGGA AGAAACAAAG chrIV:1017035-1017435 + 73 9.20e-08 CGTGATGTGA TAGCCGTTACACTACATCGGA TTGTACC chrX:115821-115921 + 41 1.25e-07 CGTGATGTGA TAGCCGTTACACTATATCGGA TTATAAACGG chrVII:541697-542084 - 10 1.25e-07 CGTGATGTGA TAGCCGTTACACTATATCGGA TGGTAATCT chrV:487228-487537 + 50 1.25e-07 CGTGATGTGA TAGCCGTTACACTATATCGGA TTAAATTCAT chrXII:797016-797351 - 45 1.25e-07 CGTGATGTGA TAGCCGTTACACTATATCGGA CGACAACTAC chrIX:370249-370589 - 48 1.25e-07 CGTGATGTGA TAGCCGTTACACTATATCGGA TTATAATCTA chrXI:140879-141247 + 56 1.25e-07 CGTGATGTGA TAGCCGTTACACTATATCGGA TTACAAAGGA chrXIII:362910-363250 - 34 3.09e-07 CGATGTGTAC TAACCACTATACTAAGATGGC AAACTTGGAT chrXI:313301-313593 + 55 3.09e-07 CGATGTGTAC TAACCACTATACTAAGATGGC AAACAACTGT chrVIII:62604-62928 - 39 3.09e-07 CGATGTGTAC TAACCACTATACTAAGATGGC ATATGATTTT chrXV:980566-980877 - 12 3.35e-07 AGCGAGAATC ATTCCACTAGACCACACGCCC ATACAATTTG chrVII:661599-661967 - 16 6.61e-07 GTGCAACGCT CTACCACTAAGCTAAGGAGGC AAATTTTTAC chrVII:1004081-1004402 - 25 6.61e-07 GTGCAACGCT CTACCACTAAGCTAAGGAGGC AAACCCTTGA chrIV:1075340-1075710 + 49 7.59e-07 GGCAACGTGA TAGCCGCTACACTATTGGAAC AATATTACGG chrXIII:586476-586857 + 73 8.12e-07 CAGATGCCAT AACCGACTAGACCACGAAACC ATAGTAA chrV:469302-469638 - 37 8.12e-07 CAGATGCCAT AACCGACTAGACCACGAAACC AATTATTTCT chrX:538425-538525 - 31 8.12e-07 GGGAGACGCG TTACCATTACGCCAACGGAAC CAACTTGGTT chrVII:823331-823688 - 23 8.12e-07 CAGATGCCAT AACCGACTAGACCACGAAACC ACTCTTATTG chrVII:412164-412519 + 56 8.12e-07 CAGATGCCAT AACCGACTAGACCACGAAACC AGTTTTTTGA chrX:378201-378301 - 36 8.12e-07 CAGATGCCAT AACCGACTAGACCACGAAACC TATTAATTTA chrXII:628242-628609 - 8 9.27e-07 CAGGCGCCTT AGACCGCTCGGCCAAACAACC ACTTATT chrVII:422909-423326 - 25 9.27e-07 CAGGCGCCTT AGACCGCTCGGCCAAACAACC ACTTATCTGT chrXI:458445-458756 - 7 9.27e-07 CAGGCGCCTT AGACCGCTCGGCCAAACAACC ACTTAT chrVII:205378-205704 - 30 9.27e-07 CAGGCGCCTT AGACCGCTCGGCCAAACAACC ACTTATTTGT chrXIV:442860-443228 - 12 9.27e-07 CAGGCGCCTT AGACCGCTCGGCCAAACAACC ACTTATTTGT chrXII:818473-818792 - 27 1.27e-06 GAATGCATGC TAACCATTGCACTAGAGGAGC ATAATAAATT chrIV:488637-489014 + 75 1.89e-06 GCGACGTCTT GAACCACTGGACCATTGGACC GGAAA chrXIII:754019-754449 - 6 2.10e-06 AGTGAGTAAA TACCTACTAAACTATGCCACA AAAAT chrXII:962868-963201 + 51 2.33e-06 CTGCCGCCTT AGACCACTCGGCCAACCCTCC GTCGATAATA chrX:120500-120600 + 68 3.91e-06 ACCTTCGGTA TTGCCGTTCAACCAATCTCCA CTACATCCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDACCAYTAVACYAHNNVVSC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:83387-83724 1.2e-09 42_[-3]_37 chrVII:930903-931165 1.2e-09 18_[+3]_61 chrV:61743-62097 1.2e-09 69_[+3]_10 chrXV:282019-282327 1.2e-09 40_[-3]_39 chrXV:226507-226853 1.2e-09 30_[+3]_49 chrXVI:860226-860597 1.2e-09 17_[-3]_62 chrVI:162075-162387 1.2e-09 46_[-3]_33 chrIV:992690-993029 1.2e-09 22_[-3]_57 chrVII:845487-845844 1.2e-09 33_[-3]_46 chrIV:520825-521152 1.5e-09 33_[-3]_46 chrVIII:134179-134515 1.5e-09 23_[-3]_56 chrIII:168200-168559 1.5e-09 22_[+3]_57 chrXIII:808126-808475 1.5e-09 46_[+3]_33 chrVII:779470-779770 3e-09 45_[-3]_34 chrXIII:195991-196301 3.7e-09 53_[+3]_26 chrXV:464353-464632 3.7e-09 7_[-3]_72 chrVIII:388769-389169 3.7e-09 55_[+3]_24 chrII:350692-350969 6.6e-09 46_[-3]_33 chrVII:736164-736523 2.4e-08 46_[-3]_33 chrXIII:131696-132039 2.4e-08 58_[+3]_21 chrXIII:747796-748115 2.4e-08 37_[+3]_42 chrX:374268-374368 2.8e-08 10_[+3]_69 chrIX:324220-324547 2.8e-08 20_[+3]_59 chrVII:531490-531770 2.8e-08 29_[-3]_50 chrX:541400-541500 2.8e-08 18_[-3]_61 chrIV:568731-569144 2.8e-08 76_[-3]_3 chrX:204587-204687 2.8e-08 26_[-3]_53 chrII:405716-406171 2.8e-08 66_[-3]_13 chrVII:544430-544815 2.8e-08 55_[+3]_24 chrXII:426944-427314 2.8e-08 52_[-3]_27 chrX:355189-355289 2.8e-08 67_[-3]_12 chrIV:1017035-1017435 9.2e-08 72_[+3]_7 chrX:115821-115921 1.3e-07 40_[+3]_39 chrVII:541697-542084 1.3e-07 9_[-3]_70 chrV:487228-487537 1.3e-07 49_[+3]_30 chrXII:797016-797351 1.3e-07 44_[-3]_35 chrIX:370249-370589 1.3e-07 47_[-3]_32 chrXI:140879-141247 1.3e-07 55_[+3]_24 chrXIII:362910-363250 3.1e-07 33_[-3]_46 chrXI:313301-313593 3.1e-07 54_[+3]_25 chrVIII:62604-62928 3.1e-07 38_[-3]_41 chrXV:980566-980877 3.3e-07 11_[-3]_68 chrVII:661599-661967 6.6e-07 15_[-3]_64 chrVII:1004081-1004402 6.6e-07 24_[-3]_55 chrIV:1075340-1075710 7.6e-07 48_[+3]_31 chrXIII:586476-586857 8.1e-07 72_[+3]_7 chrV:469302-469638 8.1e-07 36_[-3]_43 chrX:538425-538525 8.1e-07 30_[-3]_49 chrVII:823331-823688 8.1e-07 22_[-3]_57 chrVII:412164-412519 8.1e-07 55_[+3]_24 chrX:378201-378301 8.1e-07 35_[-3]_44 chrXII:628242-628609 9.3e-07 7_[-3]_72 chrVII:422909-423326 9.3e-07 24_[-3]_55 chrXI:458445-458756 9.3e-07 6_[-3]_73 chrVII:205378-205704 9.3e-07 29_[-3]_50 chrXIV:442860-443228 9.3e-07 11_[-3]_68 chrXII:818473-818792 1.3e-06 26_[-3]_53 chrIV:488637-489014 1.9e-06 74_[+3]_5 chrXIII:754019-754449 2.1e-06 5_[-3]_74 chrXII:962868-963201 2.3e-06 50_[+3]_29 chrX:120500-120600 3.9e-06 67_[+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDACCAYTAVACYAHNNVVSC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TDACCAYTAVACYAHNNVVSC width=21 seqs=61 chrIV:83387-83724 ( 43) TTACCACTAAACCACTTGCGC 1 chrVII:930903-931165 ( 19) TTACCACTAAACCACTTGCGC 1 chrV:61743-62097 ( 70) TTACCACTAAACCACTTGCGC 1 chrXV:282019-282327 ( 41) TTACCACTAAACCACTTGCGC 1 chrXV:226507-226853 ( 31) TTACCACTAAACCACTTGCGC 1 chrXVI:860226-860597 ( 18) TTACCACTAAACCACTTGCGC 1 chrVI:162075-162387 ( 47) TTACCACTAAACCACTTGCGC 1 chrIV:992690-993029 ( 23) TTACCACTAAACCACTTGCGC 1 chrVII:845487-845844 ( 34) TTACCACTAAACCACTTGCGC 1 chrIV:520825-521152 ( 34) TAACCACTACACTATAGGACC 1 chrVIII:134179-134515 ( 24) TAACCACTACACTATAGGACC 1 chrIII:168200-168559 ( 23) TAACCACTACACTATAGGACC 1 chrXIII:808126-808475 ( 47) TAACCACTACACTATAGGACC 1 chrVII:779470-779770 ( 46) TAACCACTACACTAACCGCCC 1 chrXIII:195991-196301 ( 54) ATACCACTAGACCACACGCCC 1 chrXV:464353-464632 ( 8) ATACCACTAGACCACACGCCC 1 chrVIII:388769-389169 ( 56) ATACCACTAGACCACACGCCC 1 chrII:350692-350969 ( 47) TAACCACTACACTATAAAACC 1 chrVII:736164-736523 ( 47) TTGCCATTACGCCACGCGAGC 1 chrXIII:131696-132039 ( 59) TTGCCATTACGCCACGCGAGC 1 chrXIII:747796-748115 ( 38) TTGCCATTACGCCACGCGAGC 1 chrX:374268-374368 ( 11) TGACCATTAAACTATCACGGA 1 chrIX:324220-324547 ( 21) TGACCATTAAACTATCACGGA 1 chrVII:531490-531770 ( 30) TGACCATTAAACTATCACGGA 1 chrX:541400-541500 ( 19) TGACCATTAAACTATCACGGA 1 chrIV:568731-569144 ( 77) TGACCATTAAACTATCACGGA 1 chrX:204587-204687 ( 27) TGACCATTAAACTATCACGGA 1 chrII:405716-406171 ( 67) TGACCATTAAACTATCACGGA 1 chrVII:544430-544815 ( 56) TGACCATTAAACTATCACGGA 1 chrXII:426944-427314 ( 53) TGACCATTAAACTATCACGGA 1 chrX:355189-355289 ( 68) TGACCATTAAACTATCACGGA 1 chrIV:1017035-1017435 ( 73) TAGCCGTTACACTACATCGGA 1 chrX:115821-115921 ( 41) TAGCCGTTACACTATATCGGA 1 chrVII:541697-542084 ( 10) TAGCCGTTACACTATATCGGA 1 chrV:487228-487537 ( 50) TAGCCGTTACACTATATCGGA 1 chrXII:797016-797351 ( 45) TAGCCGTTACACTATATCGGA 1 chrIX:370249-370589 ( 48) TAGCCGTTACACTATATCGGA 1 chrXI:140879-141247 ( 56) TAGCCGTTACACTATATCGGA 1 chrXIII:362910-363250 ( 34) TAACCACTATACTAAGATGGC 1 chrXI:313301-313593 ( 55) TAACCACTATACTAAGATGGC 1 chrVIII:62604-62928 ( 39) TAACCACTATACTAAGATGGC 1 chrXV:980566-980877 ( 12) ATTCCACTAGACCACACGCCC 1 chrVII:661599-661967 ( 16) CTACCACTAAGCTAAGGAGGC 1 chrVII:1004081-1004402 ( 25) CTACCACTAAGCTAAGGAGGC 1 chrIV:1075340-1075710 ( 49) TAGCCGCTACACTATTGGAAC 1 chrXIII:586476-586857 ( 73) AACCGACTAGACCACGAAACC 1 chrV:469302-469638 ( 37) AACCGACTAGACCACGAAACC 1 chrX:538425-538525 ( 31) TTACCATTACGCCAACGGAAC 1 chrVII:823331-823688 ( 23) AACCGACTAGACCACGAAACC 1 chrVII:412164-412519 ( 56) AACCGACTAGACCACGAAACC 1 chrX:378201-378301 ( 36) AACCGACTAGACCACGAAACC 1 chrXII:628242-628609 ( 8) AGACCGCTCGGCCAAACAACC 1 chrVII:422909-423326 ( 25) AGACCGCTCGGCCAAACAACC 1 chrXI:458445-458756 ( 7) AGACCGCTCGGCCAAACAACC 1 chrVII:205378-205704 ( 30) AGACCGCTCGGCCAAACAACC 1 chrXIV:442860-443228 ( 12) AGACCGCTCGGCCAAACAACC 1 chrXII:818473-818792 ( 27) TAACCATTGCACTAGAGGAGC 1 chrIV:488637-489014 ( 75) GAACCACTGGACCATTGGACC 1 chrXIII:754019-754449 ( 6) TACCTACTAAACTATGCCACA 1 chrXII:962868-963201 ( 51) AGACCACTCGGCCAACCCTCC 1 chrX:120500-120600 ( 68) TTGCCGTTCAACCAATCTCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDACCAYTAVACYAHNNVVSC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 45120 bayes= 10.22 E= 9.9e-111 -26 -264 -364 126 48 -1257 35 15 122 -106 -6 -416 -1257 228 -1257 -1257 -1257 214 -132 -416 139 -1257 16 -1257 -1257 160 -1257 35 -1257 -1257 -1257 176 153 -84 -264 -1257 35 60 35 -258 145 -1257 -6 -1257 -1257 228 -1257 -1257 -1257 126 -1257 79 176 -1257 -1257 -1257 -36 81 -364 42 29 5 16 -58 8 35 -32 -17 -47 60 100 -217 35 26 81 -416 -317 94 148 -1257 8 175 -1257 -1257 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDACCAYTAVACYAHNNVVSC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 61 E= 9.9e-111 0.245902 0.032787 0.016393 0.704918 0.409836 0.000000 0.262295 0.327869 0.688525 0.098361 0.196721 0.016393 0.000000 1.000000 0.000000 0.000000 0.000000 0.901639 0.081967 0.016393 0.770492 0.000000 0.229508 0.000000 0.000000 0.622951 0.000000 0.377049 0.000000 0.000000 0.000000 1.000000 0.852459 0.114754 0.032787 0.000000 0.377049 0.311475 0.262295 0.049180 0.803279 0.000000 0.196721 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.491803 0.000000 0.508197 1.000000 0.000000 0.000000 0.000000 0.229508 0.360656 0.016393 0.393443 0.360656 0.213115 0.229508 0.196721 0.311475 0.262295 0.163934 0.262295 0.213115 0.311475 0.409836 0.065574 0.377049 0.245902 0.360656 0.016393 0.032787 0.393443 0.573770 0.000000 0.311475 0.688525 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDACCAYTAVACYAHNNVVSC MEME-3 regular expression -------------------------------------------------------------------------------- [TA][ATG]ACC[AG][CT]TA[ACG]AC[TC]A[TCA][AGC][ACT][GCA][AGC][GC][CA] -------------------------------------------------------------------------------- Time 857.57 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVIII:388769-389169 2.62e-06 55_[+3(3.67e-09)]_24 chrX:526090-526190 9.38e-01 100 chrXIII:811183-811613 5.69e-02 100 chrIV:601306-601554 3.25e-01 100 chrXIII:653169-653599 1.32e-01 100 chrV:138496-138959 2.15e-08 22_[+1(7.90e-13)]_49 chrXV:980566-980877 1.30e-04 11_[-3(3.35e-07)]_68 chrIV:867949-868379 3.74e-01 100 chrXV:621040-621261 8.36e-01 100 chrX:355189-355289 7.25e-14 19_[+1(7.90e-13)]_19_[-3(2.76e-08)]_\ 12 chrX:139372-139472 9.75e-01 100 chrVI:191449-191755 3.57e-08 31_[-2(1.48e-08)]_48 chrXIII:572720-573087 2.32e-12 38_[-1(4.65e-10)]_5_[-2(4.79e-10)]_\ 7 chrIV:1354933-1355363 5.93e-01 100 chrXII:713170-713488 9.23e-01 100 chrXVI:642497-642927 4.10e-01 100 chrXIII:651945-652891 5.65e-01 100 chrXIV:301681-302111 3.47e-02 100 chrX:378201-378301 2.19e-09 35_[-3(8.12e-07)]_15_[+1(1.24e-09)] chrXII:722022-722452 7.22e-01 100 chrVII:883446-883926 5.43e-01 100 chrVII:828504-828961 6.09e-09 49_[-1(7.90e-13)]_22 chrIII:228509-228939 6.46e-01 100 chrXV:306947-307377 8.56e-01 100 chrX:422771-422871 8.97e-09 49_[+2(4.79e-10)]_30 chrV:235905-236335 6.48e-01 100 chrXIII:887119-887613 2.68e-02 100 chrIV:645047-645257 4.62e-07 59_[-1(4.69e-11)]_12 chrXIII:661695-662125 2.22e-01 100 chrXV:479640-480070 4.81e-01 100 chrIV:541417-541959 9.60e-01 100 chrXV:438679-439109 3.59e-01 100 chrIX:300120-300446 3.35e-17 3_[-1(3.74e-13)]_5_[-2(4.43e-09)]_\ 42 chrXII:781479-781803 6.87e-01 100 chrX:577160-577260 1.93e-02 73_[+3(6.64e-05)]_6 chrVIII:237740-238077 5.23e-08 51_[-2(1.35e-11)]_28 chrV:267643-268073 8.22e-01 100 chrXV:1028754-1029023 8.35e-02 100 chrXIV:494149-494579 5.27e-01 100 chrVI:221442-221656 1.12e-01 100 chrXV:315818-316248 7.39e-01 100 chrII:88192-88393 9.13e-01 100 chrVIII:452632-453062 9.91e-01 100 chrXIII:556724-557154 6.22e-01 100 chrXII:954175-954605 7.46e-02 100 chrIV:170376-170806 4.65e-01 100 chrXVI:281165-281429 8.08e-01 100 chrXVI:645428-645624 6.91e-01 100 chrVII:557306-557736 9.67e-01 100 chrVII:726615-727045 2.60e-01 100 chrXIII:747796-748115 3.46e-06 37_[+3(2.40e-08)]_42 chrXV:93453-93750 2.22e-01 100 chrVIII:422623-423053 9.99e-01 100 chrXVI:433486-434113 6.32e-01 100 chrXIII:808126-808475 2.39e-12 4_[-1(3.77e-10)]_13_[+3(1.48e-09)]_\ 33 chrVI:225006-225166 2.15e-02 67_[-2(8.28e-05)]_12 chrVIII:146094-146354 2.11e-01 100 chrXV:234390-234820 3.89e-01 100 chrX:703308-703408 9.41e-01 100 chrII:477431-477543 2.21e-01 100 chrXIII:354285-354715 6.99e-01 100 chrXV:409256-409686 4.98e-01 100 chrVII:517039-517469 3.22e-01 100 chrVII:254232-254636 6.40e-01 100 chrIV:488637-489014 4.38e-09 30_[-1(1.13e-09)]_15_[+3(1.89e-06)]_\ 5 chrXI:364881-365105 1.29e-01 100 chrIX:248660-249094 3.84e-10 31_[+2(3.72e-10)]_48 chrI:65869-66299 4.44e-01 100 chrXII:809900-810330 4.33e-01 100 chrVIII:55578-55695 7.20e-01 100 chrXII:1018928-1019193 2.98e-01 100 chrVII:479881-482771 5.94e-01 100 chrV:167132-167562 4.66e-01 100 chrIII:177462-177695 4.82e-01 100 chrIV:437624-437980 1.52e-09 28_[+2(1.45e-09)]_51 chrXIV:560581-560841 1.56e-13 40_[-1(5.32e-11)]_5_[-2(2.22e-10)]_\ 5 chrV:69071-69335 4.96e-02 74_[+2(4.62e-05)]_5 chrXII:426944-427314 1.81e-04 52_[-3(2.76e-08)]_27 chrIX:257466-257574 8.62e-01 100 chrVII:412164-412519 2.19e-09 11_[-1(1.24e-09)]_15_[+3(8.12e-07)]_\ 24 chrIX:177696-178126 1.04e-01 100 chrXIV:88930-89691 1.00e+00 100 chrXIII:24137-24567 5.32e-01 100 chrVII:366204-366475 9.09e-01 100 chrXVI:649171-649601 2.45e-01 100 chrXV:353935-354283 3.83e-07 24_[-2(2.22e-10)]_55 chrXIV:360014-360444 5.93e-01 100 chrXIV:499515-499753 1.66e-01 100 chrXII:201973-202314 8.09e-01 100 chrX:415847-415947 9.87e-03 100 chrIX:393325-393755 4.78e-02 42_[+2(7.24e-05)]_37 chrXIV:575691-575816 9.19e-01 100 chrXV:234190-234620 7.65e-02 100 chrV:424860-424995 5.29e-01 100 chrI:71828-73244 6.84e-02 100 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100 chrXII:507057-507487 3.10e-01 100 chrX:652197-652297 3.47e-01 100 chrVII:933302-933732 9.09e-01 100 chrV:85100-86449 7.82e-01 100 chrVIII:134179-134515 2.38e-13 23_[-3(1.48e-09)]_13_[+1(4.69e-11)]_\ 14 chrX:382851-382951 7.54e-01 100 chrII:615374-615804 4.67e-01 100 chrVII:706970-707223 3.01e-04 70_[-1(4.45e-08)]_1 chrX:171061-171161 3.52e-01 100 chrXVI:136210-136640 3.68e-01 100 chrVII:531490-531770 3.04e-09 29_[-3(2.76e-08)]_13_[+1(2.35e-08)]_\ 8 chrIV:884254-884598 7.59e-01 100 chrXII:440724-441154 8.24e-02 100 chrVII:794289-794580 5.78e-15 41_[+2(1.31e-09)]_5_[+1(3.62e-11)]_\ 4 chrXII:1014565-1014995 1.77e-01 100 chrIII:229318-229748 1.82e-01 100 chrXV:900265-900695 6.41e-01 100 chrXIV:575239-575669 8.20e-01 100 chrIV:1245601-1246031 4.60e-01 100 chrXIII:586476-586857 2.19e-09 28_[-1(1.24e-09)]_15_[+3(8.12e-07)]_\ 7 chrVI:157845-158169 3.78e-08 20_[-2(1.35e-11)]_59 chrIX:386535-386965 2.13e-01 100 chrXV:282019-282327 6.73e-07 40_[-3(1.15e-09)]_39 chrXIII:352135-352464 2.78e-08 39_[+2(1.35e-11)]_40 chrV:61743-62097 1.70e-13 28_[-1(1.11e-10)]_12_[+3(1.15e-09)]_\ 10 chrIII:90752-91087 3.68e-01 100 chrV:117590-118231 3.66e-01 100 chrII:36236-36615 6.55e-09 31_[+2(1.35e-11)]_48 chrXII:286695-287125 9.97e-02 100 chrVII:545312-545742 9.98e-01 100 chrXV:113672-113947 4.56e-07 51_[+2(2.22e-10)]_28 chrXVI:700459-700755 4.57e-01 100 chrVII:779470-779770 3.65e-05 45_[-3(2.97e-09)]_34 chrXI:74461-74787 3.52e-03 58_[+2(1.13e-05)]_21 chrXIII:480508-480819 3.35e-17 16_[-1(3.74e-13)]_5_[-2(4.43e-09)]_\ 29 chrIV:1305480-1305813 4.52e-09 42_[+2(1.45e-09)]_37 chrVII:115348-115726 2.24e-14 9_[+2(1.08e-10)]_28_[+1(8.49e-10)]_\ 13 chrXIV:506247-506677 4.68e-01 100 chrXII:374200-374559 1.65e-12 34_[+2(1.58e-08)]_5_[+1(1.45e-08)]_\ 11 chrXIV:174457-174742 8.17e-01 100 chrXII:796459-796778 6.76e-01 100 chrIX:99453-99605 9.43e-01 100 chrXVI:303849-303998 9.81e-01 100 chrIV:44214-44393 5.76e-01 100 chrXIV:577159-577432 6.76e-02 100 chrXII:899285-899715 8.67e-01 100 chrXII:500425-500855 5.58e-02 100 chrXIV:104661-105035 1.26e-14 15_[+2(2.22e-10)]_5_[+1(5.32e-11)]_\ 30 chrVIII:189954-190384 6.13e-01 100 chrII:592923-593200 8.66e-01 100 chrV:483253-483683 4.17e-01 100 chrIV:74219-74649 8.90e-01 100 chrXII:794876-795357 8.77e-01 100 chrX:390932-391032 2.97e-08 18_[-2(4.79e-10)]_61 chrXVI:131803-132233 9.30e-01 100 chrIV:768665-769095 7.82e-02 100 chrV:207477-207907 9.21e-01 100 chrV:135289-135629 3.35e-17 24_[-1(3.74e-13)]_5_[-2(4.43e-09)]_\ 21 chrIX:183309-183652 1.17e-14 18_[-1(5.47e-13)]_6_[-2(1.08e-07)]_\ 26 chrXV:882045-882475 7.69e-01 100 chrVII:516168-516598 5.09e-02 100 chrXVI:280628-280973 4.22e-01 100 chrXI:326982-327467 1.20e-01 100 chrXIII:251725-252155 4.67e-01 100 chrXI:165055-165177 8.28e-01 100 chrIV:1075340-1075710 2.58e-09 5_[-1(1.24e-09)]_14_[+3(7.59e-07)]_\ 31 chrXI:518933-519165 1.57e-02 100 chrXII:720893-721323 1.34e-01 100 chrXII:1002193-1002457 8.18e-02 100 chrX:73569-73669 9.98e-01 100 chrVIII:120123-120553 4.46e-01 100 chrV:423875-424305 8.53e-01 100 chrXII:1018158-1018588 1.27e-01 100 chrIII:191189-191619 2.46e-01 100 chrVIII:381453-381883 7.03e-01 100 chrXII:922175-922464 8.89e-02 11_[-2(5.64e-05)]_68 chrIV:1150702-1151098 2.06e-08 61_[-2(1.48e-08)]_18 chrIX:24789-25219 5.23e-01 100 chrXII:348209-348639 7.30e-01 100 chrXVI:830020-830450 9.67e-01 100 chrII:135916-136346 2.42e-01 100 chrVII:970742-971172 5.06e-01 100 chrIX:324220-324547 1.81e-04 20_[+3(2.76e-08)]_59 chrV:324921-325351 4.12e-01 100 chrVII:555454-555719 8.72e-01 100 chrVII:930903-931165 8.05e-07 18_[+3(1.15e-09)]_61 chrVIII:98458-98888 9.60e-01 100 chrV:122309-122739 1.08e-01 100 chrII:255453-255883 3.75e-01 100 chrX:526356-526456 3.08e-01 100 chrVII:271702-272132 2.46e-02 26_[-3(8.19e-05)]_53 chrIV:45545-45765 2.04e-01 100 chrXV:978745-979175 2.18e-01 100 chrIV:83387-83724 4.05e-07 42_[-3(1.15e-09)]_37 chrXIV:412722-413152 7.20e-01 100 chrXII:628242-628609 3.66e-04 7_[-3(9.27e-07)]_72 chrXV:968180-968363 1.01e-01 100 chrVII:609485-609611 7.08e-01 100 chrXII:605167-605581 4.94e-04 78_[-2(1.12e-07)]_1 chrXIII:551418-551774 8.75e-01 100 chrXV:677239-677669 2.49e-02 100 chrXI:613017-613447 1.25e-01 100 chrX:374268-374368 7.25e-14 10_[+3(2.76e-08)]_19_[-1(7.90e-13)]_\ 21 chrXII:734650-734990 1.17e-14 40_[+2(1.08e-07)]_6_[+1(5.47e-13)]_\ 4 chrXII:348534-348642 8.80e-01 100 chrIV:1017035-1017435 4.07e-12 30_[-1(9.08e-12)]_13_[+3(9.20e-08)]_\ 7 chrXII:366087-366501 2.30e-01 100 chrVII:310581-312086 9.66e-01 100 chrIII:221811-222241 3.05e-02 46_[-2(5.04e-05)]_33 chrXII:241789-241901 9.34e-01 100 chrVII:736164-736523 3.65e-06 46_[-3(2.40e-08)]_33 chrVII:277954-278283 1.61e-01 100 chrVII:310581-312056 9.66e-01 100 chrX:520718-520818 2.22e-01 100 chrV:492239-492444 1.23e-04 69_[-1(1.45e-08)]_2 chrXVI:173083-173513 8.43e-01 100 chrIX:316217-316565 5.17e-01 100 chrIII:260410-260840 5.60e-01 100 chrXI:326409-327033 8.06e-01 100 chrXV:31329-31759 9.54e-01 100 chrXV:988133-988563 2.12e-01 100 chrXIII:168696-169033 3.12e-05 31_[+1(9.34e-09)]_40 chrV:176966-177343 2.70e-08 28_[+1(9.08e-12)]_43 chrIV:491294-491724 9.96e-03 56_[+1(7.86e-06)]_15 chrXII:48233-48663 2.52e-01 100 chrVIII:126999-127429 1.94e-01 100 chrIX:174931-175160 1.26e-14 44_[+2(2.22e-10)]_5_[+1(5.32e-11)]_\ 1 chrXII:899081-899511 3.91e-01 100 chrII:477072-477426 6.99e-01 100 chrXIII:352938-353368 8.48e-01 100 chrIV:363096-363526 1.18e-01 100 chrXIII:272148-272578 2.15e-01 100 chrVII:110407-110807 6.20e-01 100 chrIII:227770-228204 6.87e-09 13_[+2(8.37e-09)]_66 chrIV:520825-521152 3.34e-13 33_[-3(1.48e-09)]_13_[+1(4.69e-11)]_\ 4 chrIV:1175663-1176014 8.97e-09 49_[+2(4.79e-10)]_30 chrXV:622683-623113 2.31e-01 100 chrIV:1352374-1352669 3.35e-17 3_[-1(3.74e-13)]_5_[-2(4.43e-09)]_\ 42 chrXI:231108-231538 3.74e-01 100 chrVII:123696-124126 9.69e-01 100 chrVII:609748-610186 3.14e-02 100 chrIX:68448-68878 1.69e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************