Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.012883
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.05724
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.070572
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.013305
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.066033
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background
Finished invoke:
  name: bg  status: 0  time: 0.011085
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 912.392959
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 90.668883
Invoking:
  centrimo -seqlen 404 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.196657
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.392189
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -primary GKTARSGCGTCWSACTHDTAATS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.265994
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -primary BGRGRVTCGAACCCVKGAYCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.266362
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -primary AADWGGYYBBDTGGCCNAGTB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.271199
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -primary ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.189783
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -primary ATGGCAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.181149
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -primary GGWAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.216513
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -primary AAGARA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.257357
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -primary GACTSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.171219
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -primary CCVTACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.153811
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -primary ACYGGGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.184913
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -primary AKACGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.191327
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -primary AGCGCSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.159725
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -primary GGYTATCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.16718
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -primary ACTTCWAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.175446
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -primary GCTTTGK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.189138
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -primary ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 0.164365
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background --motif GKTARSGCGTCWSACTHDTAATS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.20262
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background --motif BGRGRVTCGAACCCVKGAYCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.198969
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background --motif AADWGGYYBBDTGGCCNAGTB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.198717
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background --motif ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.128174
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background --motif ATGGCAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.128453
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background --motif GGWAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.110546
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background --motif AAGARA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.109154
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background --motif GACTSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.127717
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background --motif CCVTACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.124543
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background --motif ACYGGGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.127112
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background --motif AKACGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.125649
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background --motif AGCGCSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.126296
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background --motif GGYTATCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.127605
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background --motif ACTTCWAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.127096
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background --motif GCTTTGK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.14425
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background --motif ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/YJM789--MIG1.fa
Finished invoke:
  name: fimo16  status: 0  time: 0.124389
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.165288
Done