******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:424365-424465 1.0000 100 chrV:77614-77823 1.0000 100 chrIV:1449855-1450259 1.0000 100 chrXII:370660-370841 1.0000 100 chrXV:444862-446096 1.0000 100 chrXV:671053-671407 1.0000 100 chrIV:1359475-1359736 1.0000 100 chrXV:605686-606090 1.0000 100 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chrV:131012-131305 1.0000 100 chrIX:317703-318107 1.0000 100 chrXII:65379-65783 1.0000 100 chrXIII:463443-463673 1.0000 100 chrX:617763-617863 1.0000 100 chrII:88961-89365 1.0000 100 chrIV:1017079-1017445 1.0000 100 chrIV:217100-217504 1.0000 100 chrXII:784232-784538 1.0000 100 chrXV:605452-605856 1.0000 100 chrIV:1302172-1302576 1.0000 100 chrXII:605200-605570 1.0000 100 chrXV:883615-884019 1.0000 100 chrXIV:577141-577272 1.0000 100 chrXV:464363-464629 1.0000 100 chrV:423231-423360 1.0000 100 chrXII:899418-899519 1.0000 100 chrIV:1278658-1279062 1.0000 100 chrXV:883375-883779 1.0000 100 chrXV:622833-623237 1.0000 100 chrXIII:861182-861390 1.0000 100 chrXV:228165-228489 1.0000 100 chrIV:468245-468649 1.0000 100 chrXII:348195-348599 1.0000 100 chrXII:812126-812530 1.0000 100 chrXIII:222550-222954 1.0000 100 chrIV:579829-580226 1.0000 100 chrVIII:475607-475906 1.0000 100 chrV:288340-288668 1.0000 100 chrXII:201932-202086 1.0000 100 chrXII:254280-254684 1.0000 100 chrXIII:552826-553073 1.0000 100 chrXIV:771926-772350 1.0000 100 chrIX:69290-69694 1.0000 100 chrX:156447-156547 1.0000 100 chrVII:401335-401739 1.0000 100 chrIV:1402977-1403140 1.0000 100 chrXII:796483-796784 1.0000 100 chrXII:547057-547461 1.0000 100 chrXII:721787-722191 1.0000 100 chrXV:779773-780038 1.0000 100 chrIV:437630-437930 1.0000 100 chrXII:962893-963187 1.0000 100 chrIX:388237-388533 1.0000 100 chrIII:227783-228151 1.0000 100 chrIII:107393-107604 1.0000 100 chrIV:1360563-1360967 1.0000 100 chrXIV:415829-415941 1.0000 100 chrIV:519638-519885 1.0000 100 chrXII:712246-712650 1.0000 100 chrIV:601629-602033 1.0000 100 chrXIII:762100-762202 1.0000 100 chrXII:366088-366404 1.0000 100 chrI:190132-190536 1.0000 100 chrVIII:146070-146308 1.0000 100 chrXV:832497-832651 1.0000 100 chrXV:866651-866883 1.0000 100 chrXII:820082-820183 1.0000 100 chrVI:223100-223504 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 576 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 57600 N= 576 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--MIG1/background): A 0.308 C 0.192 G 0.192 T 0.308 ******************************************************************************** ******************************************************************************** MOTIF GKTARSGCGTCWSACTHDTAATS MEME-1 width = 23 sites = 76 llr = 1191 E-value = 7.4e-192 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKTARSGCGTCWSACTHDTAATS MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1a511:3124:5::432a8:: pos.-specific C :21::4:a:262327:213:226 probability G a5::359:711162::13:::24 matrix T :38:2::::623113a336:16: bits 2.4 * 2.1 * * 1.9 * * 1.7 * * ** * Relative 1.4 * * *** ** * * Entropy 1.2 * * *** * ** * * (22.6 bits) 1.0 * ** **** * ** ** * 0.7 **** **** * ** **** 0.5 **** ****** * ** ***** 0.2 *********** **** ***** 0.0 ----------------------- Multilevel GGTAAGGCGTCAGACTATTAATC consensus T GC AC TCGT TGC GG sequence CA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCWSACTHDTAATS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------- chrIII:295375-295600 + 64 2.22e-11 TGGCCAAGTT GGTAAGGCGCCACACTAGTAATG TGGAGATCAT chrIX:174962-175120 + 57 2.22e-11 TGGCCAAGTT GGTAAGGCGCCACACTAGTAATG TGGAGATCAT chrVIII:116015-116349 - 8 2.22e-11 TGGCCAAGTT GGTAAGGCGCCACACTAGTAATG TGGAGAT chrIV:434185-434441 - 34 2.22e-11 TGGCCAAGTT GGTAAGGCGCCACACTAGTAATG TGGAGATCAT chrX:59033-59133 - 16 2.22e-11 TGGCCAAGTT GGTAAGGCGCCACACTAGTAATG TGGAGATCAT chrII:266227-266618 + 23 2.22e-11 TGGCCAAGTT GGTAAGGCGCCACACTAGTAATG TGGAGATCAT chrXIII:480511-480832 - 33 7.31e-11 TGGCGCAATC GGTAGCGCGTATGACTCTTAATC ATAAGGTTAG chrX:414832-414932 + 50 7.31e-11 TGGCGCAATC GGTAGCGCGTATGACTCTTAATC ATAAGGTTAG chrV:135297-135609 - 55 7.31e-11 TGGCGCAATC GGTAGCGCGTATGACTCTTAATC ATAAGGTTAG chrVII:185592-185911 - 46 7.31e-11 TGGCGCAATC GGTAGCGCGTATGACTCTTAATC ATAAGGTTAG chrVI:226592-226869 - 41 7.31e-11 TGGCGCAATC GGTAGCGCGTATGACTCTTAATC ATAAGGTTAG chrIV:1201601-1201934 + 50 7.31e-11 TGGCGCAATC GGTAGCGCGTATGACTCTTAATC ATAAGGTTAG chrXVI:581917-582234 + 54 7.31e-11 TGGCGCAATC GGTAGCGCGTATGACTCTTAATC ATAAGGTTAG chrVII:876259-876576 + 44 7.31e-11 TGGCGCAATC GGTAGCGCGTATGACTCTTAATC ATAAGGTTAG chrXI:46675-46934 - 14 3.56e-10 TTGGCCAAGT GGTAAGGCATCGCACTCGTAATG CGGGGATCGT chrVII:405412-405648 + 6 5.07e-10 GTAAT GGCAACGCGTCTGACTTCTAATC AGAAGATTAT chrVII:828552-828959 - 51 5.07e-10 GTGGCGTAAT GGCAACGCGTCTGACTTCTAATC AGAAGATTAT chrXIII:747807-748108 - 18 5.07e-10 GTGGCGTAAT GGCAACGCGTCTGACTTCTAATC AGAAGATTAT chrX:374297-374397 - 70 5.07e-10 GGCGTAAT GGCAACGCGTCTGACTTCTAATC AGAAGATTAT chrII:405704-406121 + 32 5.07e-10 GTGGCGTAAT GGCAACGCGTCTGACTTCTAATC AGAAGATTAT chrIV:568744-569134 + 9 5.07e-10 GGCGTAAT GGCAACGCGTCTGACTTCTAATC AGAAGATTAT chrX:538451-538551 + 44 7.13e-10 TTGGCGTAAT GGTAACGCGTCTCCCTCCTAAGG AGAAGACTGC chrV:288340-288668 - 31 2.14e-09 TGGCCGAGTG GTTAAGGCGACAGACTTGAAATC TGTTGGGCTC chrIX:248686-249065 + 42 2.14e-09 TGGCCGAGTG GTTAAGGCGACAGACTTGAAATC TGTTGGGCTC chrXV:228165-228489 + 72 3.29e-09 GGCCAAGTTG GTTAAGGCGTGCGACTGTTAATC GCAAGA chrIII:127564-127884 + 60 3.29e-09 GGCCAAGTTG GTTAAGGCGTGCGACTGTTAATC GCAAGATCGT chrVI:137352-137694 - 46 3.29e-09 GGCCAAGTTG GTTAAGGCGTGCGACTGTTAATC GCAAGATCGT chrXI:74493-74769 + 61 3.29e-09 GGCCAAGTTG GTTAAGGCGTGCGACTGTTAATC GCAAGATCGT chrXIV:102573-102924 + 36 3.29e-09 GGCCAAGTTG GTTAAGGCGTGCGACTGTTAATC GCAAGATCGT chrVII:731000-731340 + 35 3.29e-09 GGCCAAGTTG GTTAAGGCGTGCGACTGTTAATC GCAAGATCGT chrI:166145-166451 + 36 9.35e-09 TGGCGCAGTT GGTAGCGCGCTTCCCTTGCAAGG AAGAGGTCAT chrVII:1004097-1004364 + 52 9.35e-09 TTAGCTTAGT GGTAGAGCGTTGCACTTGTAATG CAAAGGTCGT chrVII:661583-661906 + 71 9.35e-09 TTAGCTTAGT GGTAGAGCGTTGCACTTGTAATG CAAAGGT chrXV:438492-438863 + 33 1.06e-08 TAGCTCAGTT GGTAGAGCGTTCGGCTTTTAAGC GCATTTGCTT chrIV:359418-359770 + 50 1.06e-08 TAGCTCAGTT GGTAGAGCGTTCGGCTTTTAAGC GCATTTGCTT chrXII:875228-875574 + 42 1.06e-08 TAGCTCAGTT GGTAGAGCGTTCGGCTTTTAAGC GCATTTGCTT chrV:99973-100295 + 65 4.41e-08 GTGGCGCAGT GGAAGCGCGCAGGGCTCATAACC CTGATGTCCT chrIV:437630-437930 + 59 5.37e-08 TGGCCGAGTG GTTAAGGCGAAAGATTAGAAATC TTTTGGGCTT chrII:226942-227262 + 40 5.37e-08 TGGCCGAGTG GTTAAGGCGAAAGATTAGAAATC TTTTGGGCTT chrIV:1305487-1305763 + 72 5.37e-08 TGGCCGAGTG GTTAAGGCGAAAGATTAGAAATC TTTTGG chrX:523910-524010 - 25 5.37e-08 TGGCCGAGTG GTTAAGGCGAAAGATTAGAAATC TTTTGGGCTT chrXIII:259070-259387 - 22 5.37e-08 TGGCCGAGTG GTTAAGGCGAAAGATTAGAAATC TTTTGGGCTT chrVIII:132955-133257 - 12 5.37e-08 TGGCCGAGTG GTTAAGGCGAAAGATTAGAAATC TTTTGGGCTT chrXIII:572734-573115 - 42 6.50e-08 TAGCTCAGTA GGAAGAGCGTCAGTCTCATAATC TGAAGGTCGA chrX:422771-422871 + 69 6.50e-08 TAGCTCAGTA GGAAGAGCGTCAGTCTCATAATC TGAAGGTCG chrXV:976353-976586 + 19 6.50e-08 TAGCTCAGTA GGAAGAGCGTCAGTCTCATAATC TGAAGGTCGA chrIV:1175680-1176009 + 52 6.50e-08 TAGCTCAGTA GGAAGAGCGTCAGTCTCATAATC TGAAGGTCGA chrVII:823360-823639 + 51 1.03e-07 GGTCTAGTCG GTTATGGCATCTGCTTAACACGC AGAACGTCCC chrXI:379536-379823 + 69 1.03e-07 GGTCTAGTCG GTTATGGCATCTGCTTAACACGC AGAACGTCC chrXIII:372379-372638 - 20 1.03e-07 GGTCTAGTCG GTTATGGCATCTGCTTAACACGC AGAACGTCCC chrXI:308072-308348 - 17 1.03e-07 GGTCTAGTCG GTTATGGCATCTGCTTAACACGC AGAACGTCCC chrVII:412202-412514 - 19 1.03e-07 GGTCTAGTCG GTTATGGCATCTGCTTAACACGC AGAACGTCCC chrXV:663682-664012 - 48 1.03e-07 GGTCTAGTCG GTTATGGCATCTGCTTAACACGC AGAACGTCCC chrXII:1051989-1052215 - 52 1.33e-07 GGCCCAGTTG GTTAAGGCACCGTGCTAATAACG CGGGGATCAG chrXVI:435769-436125 - 29 1.33e-07 ATGGCGCAGT GGTAGCGCAGCAGATTGCAAATC TGTTGGTCCT chrXIV:569799-569986 - 58 1.33e-07 GGCCCAGTTG GTTAAGGCACCGTGCTAATAACG CGGGGATCAG chrII:197344-197648 + 66 1.33e-07 GGCCCAGTTG GTTAAGGCACCGTGCTAATAACG CGGGGATCAG chrXII:734647-734965 + 64 1.33e-07 GGCCCAGTTG GTTAAGGCACCGTGCTAATAACG CGGGGATCAG chrXVI:819369-819755 + 35 1.33e-07 GGCCCAGTTG GTTAAGGCACCGTGCTAATAACG CGGGGATCAG chrIV:410263-410516 + 57 3.44e-07 TGGCGTAGTC GGTAGCGCGCTCCCTTAGCATGG GAGAGGTCTC chrVII:774185-774519 + 64 3.44e-07 TGGCGTAGTC GGTAGCGCGCTCCCTTAGCATGG GAGAGGTCTC chrX:197218-197318 - 20 3.44e-07 TGGCGTAGTC GGTAGCGCGCTCCCTTAGCATGG GAGAGGTCTC chrXII:656838-657139 - 29 3.44e-07 TGGCGTAGTC GGTAGCGCGCTCCCTTAGCATGG GAGAGGTCTC chrVII:401335-401739 - 72 5.25e-07 GTAACG GCTATCACATCACGCTTTCACCG TGGAGACCGG chrII:645009-645330 + 65 5.25e-07 TAGTGTAACG GCTATCACATCACGCTTTCACCG TGGAGACCGG chrXIII:290643-290962 + 66 5.25e-07 TAGTGTAACG GCTATCACATCACGCTTTCACCG TGGAGACCGG chrV:176954-177346 + 16 5.25e-07 TAGTGTAACG GCTATCACATCACGCTTTCACCG TGGAGACCGG chrXVI:210094-210416 - 19 5.25e-07 TAGTGTAACG GCTATCACATCACGCTTTCACCG TGGAGACCGG chrV:487247-487518 - 31 5.25e-07 TAGTGTAACG GCTATCACATCACGCTTTCACCG TGGAGACCGG chrIV:1017079-1017445 - 27 1.12e-06 TAGTGTAACG GCTATCACATCACGTTCTCACCG TGGAGACCGG chrXV:340203-340524 - 19 1.12e-06 TGGCCCAATG GTCACGGCGTCTGGCTACGAACC AGAAGATTCC chrIV:519638-519885 + 50 1.33e-06 GGCCGAGTGG TCTAAGGCGGCAGACTTAAGATC TGTTGGACGG chrXII:962893-963187 - 25 1.33e-06 GGCCGAGTGG TCTAAGGCGGCAGACTTAAGATC TGTTGGACGG chrXIV:726061-726311 - 41 1.33e-06 GGCCGAGTGG TCTAAGGCGGCAGACTTAAGATC TGTTGGACGG chrVIII:475607-475906 - 33 1.83e-06 TAGTGTAGCG GCTATCACGTTGCCTTCACACGG CAAAGGTCCC chrIV:1075395-1075687 - 14 1.83e-06 TAGTGTAGCG GCTATCACGTTGCCTTCACACGG CAAAGGTCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCWSACTHDTAATS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:295375-295600 2.2e-11 63_[+1]_14 chrIX:174962-175120 2.2e-11 56_[+1]_21 chrVIII:116015-116349 2.2e-11 7_[-1]_70 chrIV:434185-434441 2.2e-11 33_[-1]_44 chrX:59033-59133 2.2e-11 15_[-1]_62 chrII:266227-266618 2.2e-11 22_[+1]_55 chrXIII:480511-480832 7.3e-11 32_[-1]_45 chrX:414832-414932 7.3e-11 49_[+1]_28 chrV:135297-135609 7.3e-11 54_[-1]_23 chrVII:185592-185911 7.3e-11 45_[-1]_32 chrVI:226592-226869 7.3e-11 40_[-1]_37 chrIV:1201601-1201934 7.3e-11 49_[+1]_28 chrXVI:581917-582234 7.3e-11 53_[+1]_24 chrVII:876259-876576 7.3e-11 43_[+1]_34 chrXI:46675-46934 3.6e-10 13_[-1]_64 chrVII:405412-405648 5.1e-10 5_[+1]_72 chrVII:828552-828959 5.1e-10 50_[-1]_27 chrXIII:747807-748108 5.1e-10 17_[-1]_60 chrX:374297-374397 5.1e-10 69_[-1]_8 chrII:405704-406121 5.1e-10 31_[+1]_46 chrIV:568744-569134 5.1e-10 8_[+1]_69 chrX:538451-538551 7.1e-10 43_[+1]_34 chrV:288340-288668 2.1e-09 30_[-1]_47 chrIX:248686-249065 2.1e-09 41_[+1]_36 chrXV:228165-228489 3.3e-09 71_[+1]_6 chrIII:127564-127884 3.3e-09 59_[+1]_18 chrVI:137352-137694 3.3e-09 45_[-1]_32 chrXI:74493-74769 3.3e-09 60_[+1]_17 chrXIV:102573-102924 3.3e-09 35_[+1]_42 chrVII:731000-731340 3.3e-09 34_[+1]_43 chrI:166145-166451 9.4e-09 35_[+1]_42 chrVII:1004097-1004364 9.4e-09 51_[+1]_26 chrVII:661583-661906 9.4e-09 70_[+1]_7 chrXV:438492-438863 1.1e-08 32_[+1]_45 chrIV:359418-359770 1.1e-08 49_[+1]_28 chrXII:875228-875574 1.1e-08 41_[+1]_36 chrV:99973-100295 4.4e-08 64_[+1]_13 chrIV:437630-437930 5.4e-08 58_[+1]_19 chrII:226942-227262 5.4e-08 39_[+1]_38 chrIV:1305487-1305763 5.4e-08 71_[+1]_6 chrX:523910-524010 5.4e-08 24_[-1]_53 chrXIII:259070-259387 5.4e-08 21_[-1]_56 chrVIII:132955-133257 5.4e-08 11_[-1]_66 chrXIII:572734-573115 6.5e-08 41_[-1]_36 chrX:422771-422871 6.5e-08 68_[+1]_9 chrXV:976353-976586 6.5e-08 18_[+1]_59 chrIV:1175680-1176009 6.5e-08 51_[+1]_26 chrVII:823360-823639 1e-07 50_[+1]_27 chrXI:379536-379823 1e-07 68_[+1]_9 chrXIII:372379-372638 1e-07 19_[-1]_58 chrXI:308072-308348 1e-07 16_[-1]_61 chrVII:412202-412514 1e-07 18_[-1]_59 chrXV:663682-664012 1e-07 47_[-1]_30 chrXII:1051989-1052215 1.3e-07 51_[-1]_26 chrXVI:435769-436125 1.3e-07 28_[-1]_49 chrXIV:569799-569986 1.3e-07 57_[-1]_20 chrII:197344-197648 1.3e-07 65_[+1]_12 chrXII:734647-734965 1.3e-07 63_[+1]_14 chrXVI:819369-819755 1.3e-07 34_[+1]_43 chrIV:410263-410516 3.4e-07 56_[+1]_21 chrVII:774185-774519 3.4e-07 63_[+1]_14 chrX:197218-197318 3.4e-07 19_[-1]_58 chrXII:656838-657139 3.4e-07 28_[-1]_49 chrVII:401335-401739 5.2e-07 71_[-1]_6 chrII:645009-645330 5.2e-07 64_[+1]_13 chrXIII:290643-290962 5.2e-07 65_[+1]_12 chrV:176954-177346 5.2e-07 15_[+1]_62 chrXVI:210094-210416 5.2e-07 18_[-1]_59 chrV:487247-487518 5.2e-07 30_[-1]_47 chrIV:1017079-1017445 1.1e-06 26_[-1]_51 chrXV:340203-340524 1.1e-06 18_[-1]_59 chrIV:519638-519885 1.3e-06 49_[+1]_28 chrXII:962893-963187 1.3e-06 24_[-1]_53 chrXIV:726061-726311 1.3e-06 40_[-1]_37 chrVIII:475607-475906 1.8e-06 32_[-1]_45 chrIV:1075395-1075687 1.8e-06 13_[-1]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCWSACTHDTAATS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKTARSGCGTCWSACTHDTAATS width=23 seqs=76 chrIII:295375-295600 ( 64) GGTAAGGCGCCACACTAGTAATG 1 chrIX:174962-175120 ( 57) GGTAAGGCGCCACACTAGTAATG 1 chrVIII:116015-116349 ( 8) GGTAAGGCGCCACACTAGTAATG 1 chrIV:434185-434441 ( 34) GGTAAGGCGCCACACTAGTAATG 1 chrX:59033-59133 ( 16) GGTAAGGCGCCACACTAGTAATG 1 chrII:266227-266618 ( 23) GGTAAGGCGCCACACTAGTAATG 1 chrXIII:480511-480832 ( 33) GGTAGCGCGTATGACTCTTAATC 1 chrX:414832-414932 ( 50) GGTAGCGCGTATGACTCTTAATC 1 chrV:135297-135609 ( 55) GGTAGCGCGTATGACTCTTAATC 1 chrVII:185592-185911 ( 46) GGTAGCGCGTATGACTCTTAATC 1 chrVI:226592-226869 ( 41) GGTAGCGCGTATGACTCTTAATC 1 chrIV:1201601-1201934 ( 50) GGTAGCGCGTATGACTCTTAATC 1 chrXVI:581917-582234 ( 54) GGTAGCGCGTATGACTCTTAATC 1 chrVII:876259-876576 ( 44) GGTAGCGCGTATGACTCTTAATC 1 chrXI:46675-46934 ( 14) GGTAAGGCATCGCACTCGTAATG 1 chrVII:405412-405648 ( 6) GGCAACGCGTCTGACTTCTAATC 1 chrVII:828552-828959 ( 51) GGCAACGCGTCTGACTTCTAATC 1 chrXIII:747807-748108 ( 18) GGCAACGCGTCTGACTTCTAATC 1 chrX:374297-374397 ( 70) GGCAACGCGTCTGACTTCTAATC 1 chrII:405704-406121 ( 32) GGCAACGCGTCTGACTTCTAATC 1 chrIV:568744-569134 ( 9) GGCAACGCGTCTGACTTCTAATC 1 chrX:538451-538551 ( 44) GGTAACGCGTCTCCCTCCTAAGG 1 chrV:288340-288668 ( 31) GTTAAGGCGACAGACTTGAAATC 1 chrIX:248686-249065 ( 42) GTTAAGGCGACAGACTTGAAATC 1 chrXV:228165-228489 ( 72) GTTAAGGCGTGCGACTGTTAATC 1 chrIII:127564-127884 ( 60) GTTAAGGCGTGCGACTGTTAATC 1 chrVI:137352-137694 ( 46) GTTAAGGCGTGCGACTGTTAATC 1 chrXI:74493-74769 ( 61) GTTAAGGCGTGCGACTGTTAATC 1 chrXIV:102573-102924 ( 36) GTTAAGGCGTGCGACTGTTAATC 1 chrVII:731000-731340 ( 35) GTTAAGGCGTGCGACTGTTAATC 1 chrI:166145-166451 ( 36) GGTAGCGCGCTTCCCTTGCAAGG 1 chrVII:1004097-1004364 ( 52) GGTAGAGCGTTGCACTTGTAATG 1 chrVII:661583-661906 ( 71) GGTAGAGCGTTGCACTTGTAATG 1 chrXV:438492-438863 ( 33) GGTAGAGCGTTCGGCTTTTAAGC 1 chrIV:359418-359770 ( 50) GGTAGAGCGTTCGGCTTTTAAGC 1 chrXII:875228-875574 ( 42) GGTAGAGCGTTCGGCTTTTAAGC 1 chrV:99973-100295 ( 65) GGAAGCGCGCAGGGCTCATAACC 1 chrIV:437630-437930 ( 59) GTTAAGGCGAAAGATTAGAAATC 1 chrII:226942-227262 ( 40) GTTAAGGCGAAAGATTAGAAATC 1 chrIV:1305487-1305763 ( 72) GTTAAGGCGAAAGATTAGAAATC 1 chrX:523910-524010 ( 25) GTTAAGGCGAAAGATTAGAAATC 1 chrXIII:259070-259387 ( 22) GTTAAGGCGAAAGATTAGAAATC 1 chrVIII:132955-133257 ( 12) GTTAAGGCGAAAGATTAGAAATC 1 chrXIII:572734-573115 ( 42) GGAAGAGCGTCAGTCTCATAATC 1 chrX:422771-422871 ( 69) GGAAGAGCGTCAGTCTCATAATC 1 chrXV:976353-976586 ( 19) GGAAGAGCGTCAGTCTCATAATC 1 chrIV:1175680-1176009 ( 52) GGAAGAGCGTCAGTCTCATAATC 1 chrVII:823360-823639 ( 51) GTTATGGCATCTGCTTAACACGC 1 chrXI:379536-379823 ( 69) GTTATGGCATCTGCTTAACACGC 1 chrXIII:372379-372638 ( 20) GTTATGGCATCTGCTTAACACGC 1 chrXI:308072-308348 ( 17) GTTATGGCATCTGCTTAACACGC 1 chrVII:412202-412514 ( 19) GTTATGGCATCTGCTTAACACGC 1 chrXV:663682-664012 ( 48) GTTATGGCATCTGCTTAACACGC 1 chrXII:1051989-1052215 ( 52) GTTAAGGCACCGTGCTAATAACG 1 chrXVI:435769-436125 ( 29) GGTAGCGCAGCAGATTGCAAATC 1 chrXIV:569799-569986 ( 58) GTTAAGGCACCGTGCTAATAACG 1 chrII:197344-197648 ( 66) GTTAAGGCACCGTGCTAATAACG 1 chrXII:734647-734965 ( 64) GTTAAGGCACCGTGCTAATAACG 1 chrXVI:819369-819755 ( 35) GTTAAGGCACCGTGCTAATAACG 1 chrIV:410263-410516 ( 57) GGTAGCGCGCTCCCTTAGCATGG 1 chrVII:774185-774519 ( 64) GGTAGCGCGCTCCCTTAGCATGG 1 chrX:197218-197318 ( 20) GGTAGCGCGCTCCCTTAGCATGG 1 chrXII:656838-657139 ( 29) GGTAGCGCGCTCCCTTAGCATGG 1 chrVII:401335-401739 ( 72) GCTATCACATCACGCTTTCACCG 1 chrII:645009-645330 ( 65) GCTATCACATCACGCTTTCACCG 1 chrXIII:290643-290962 ( 66) GCTATCACATCACGCTTTCACCG 1 chrV:176954-177346 ( 16) GCTATCACATCACGCTTTCACCG 1 chrXVI:210094-210416 ( 19) GCTATCACATCACGCTTTCACCG 1 chrV:487247-487518 ( 31) GCTATCACATCACGCTTTCACCG 1 chrIV:1017079-1017445 ( 27) GCTATCACATCACGTTCTCACCG 1 chrXV:340203-340524 ( 19) GTCACGGCGTCTGGCTACGAACC 1 chrIV:519638-519885 ( 50) TCTAAGGCGGCAGACTTAAGATC 1 chrXII:962893-963187 ( 25) TCTAAGGCGGCAGACTTAAGATC 1 chrXIV:726061-726311 ( 41) TCTAAGGCGGCAGACTTAAGATC 1 chrVIII:475607-475906 ( 33) GCTATCACGTTGCCTTCACACGG 1 chrIV:1075395-1075687 ( 14) GCTATCACGTTGCCTTCACACGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCWSACTHDTAATS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 23 n= 44928 bayes= 10.1035 E= 7.4e-192 -1289 -1289 233 -296 -1289 -28 138 15 -223 -106 -1289 145 170 -1289 -1289 -1289 62 -386 72 -64 -138 109 131 -1289 -138 -1289 220 -1289 -1289 238 -1289 -1289 -23 -1289 194 -1289 -155 22 -186 100 -64 156 -128 -97 31 -16 -40 -3 -1289 72 169 -223 81 -6 22 -255 -1289 194 -1289 -23 -1289 -1289 -1289 170 26 31 -106 -3 -16 -69 60 3 -97 46 -386 88 164 -1289 -228 -1289 128 4 -1289 -255 -1289 -6 22 94 -1289 169 99 -1289 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCWSACTHDTAATS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 23 nsites= 76 E= 7.4e-192 0.000000 0.000000 0.960526 0.039474 0.000000 0.157895 0.500000 0.342105 0.065789 0.092105 0.000000 0.842105 1.000000 0.000000 0.000000 0.000000 0.473684 0.013158 0.315789 0.197368 0.118421 0.407895 0.473684 0.000000 0.118421 0.000000 0.881579 0.000000 0.000000 1.000000 0.000000 0.000000 0.263158 0.000000 0.736842 0.000000 0.105263 0.223684 0.052632 0.618421 0.197368 0.565789 0.078947 0.157895 0.381579 0.171053 0.144737 0.302632 0.000000 0.315789 0.618421 0.065789 0.539474 0.184211 0.223684 0.052632 0.000000 0.736842 0.000000 0.263158 0.000000 0.000000 0.000000 1.000000 0.368421 0.236842 0.092105 0.302632 0.276316 0.118421 0.289474 0.315789 0.157895 0.263158 0.013158 0.565789 0.960526 0.000000 0.039474 0.000000 0.750000 0.197368 0.000000 0.052632 0.000000 0.184211 0.223684 0.592105 0.000000 0.618421 0.381579 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCWSACTHDTAATS MEME-1 regular expression -------------------------------------------------------------------------------- G[GT]TA[AG][GC]GC[GA][TC]C[AT][GC][AG][CT]T[ATC][TGA][TC]AA[TG][CG] -------------------------------------------------------------------------------- Time 325.55 secs. ******************************************************************************** ******************************************************************************** MOTIF BGRGRVTCGAACCCVKGAYCT MEME-2 width = 21 sites = 55 llr = 990 E-value = 6.2e-176 ******************************************************************************** -------------------------------------------------------------------------------- Motif BGRGRVTCGAACCCVKGAYCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::3:44:::aa::13:37::: pos.-specific C 33:::2:8:::a7742::682 probability G 476a63::a::::23471:1: matrix T 3::::1a2::::2:14:2417 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * ****** Relative 1.4 * * ****** Entropy 1.2 * ** ****** * * ** (26.0 bits) 1.0 **** ******** * ** 0.7 ***** ******** ***** 0.5 ***** ******** ****** 0.2 ********************* 0.0 --------------------- Multilevel GGGGGATCGAACCCCTGACCT consensus TCA AG TGAGATT C sequence C C GC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGRGRVTCGAACCCVKGAYCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIII:480511-480832 + 9 5.98e-12 GCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrX:414832-414932 - 76 5.98e-12 TGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrV:135297-135609 + 31 5.98e-12 AAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrVII:185592-185911 + 22 5.98e-12 TAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrVI:226592-226869 + 17 5.98e-12 AAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrIV:1201601-1201934 - 76 5.98e-12 TGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrXVI:581917-582234 - 80 5.98e-12 . GGGGGCTCGAACCCCTAACCT TATGATTAAG chrVII:876259-876576 - 70 5.98e-12 AAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrXIV:631772-632012 + 13 7.37e-12 GGGGGCGAGC CGGGACTCGAACCCGGGACCT CCCGCACCCT chrVIII:475607-475906 + 9 1.25e-10 GTTCCAAC CGAGGATCGAACTCGGGACCT TTGCCGTGTG chrVII:405412-405648 - 32 1.45e-10 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrVII:828552-828959 + 27 1.45e-10 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrX:374297-374397 + 46 1.45e-10 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrX:355203-355303 - 22 1.45e-10 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrII:405704-406121 - 58 1.45e-10 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrIV:568744-569134 - 35 1.45e-10 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrXII:1051989-1052215 + 28 2.92e-10 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrXIV:569799-569986 + 34 2.92e-10 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrXVI:819369-819755 - 61 2.92e-10 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrI:166145-166451 - 62 4.33e-10 TTGGACGCAA CCGGAATCGAACCGATGACCT CTTCCTTGCA chrVII:401335-401739 + 49 5.57e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrIV:1017079-1017445 + 4 5.57e-10 AGC GGGGAGTCGAACCCCGGTCTC CACGGTGAGA chrV:176954-177346 - 41 5.57e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrV:487247-487518 + 8 5.57e-10 CCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrXI:578830-579268 - 32 7.13e-10 ACTCCTCATA GGGGGCTCGAACCCCTGACAT TTCGGTATCC chrXV:110858-111138 + 23 8.04e-10 ATGAGCGGTA CGAGAATCGAACCCGTGTCCC CACCTTGGAA chrXIV:96142-96439 + 10 8.04e-10 TGAGCGGTA CGAGAATCGAACCCGTGTCCC CACCTTGGAA chrIV:488577-488995 + 70 1.60e-09 CTGATCCAAC CGAGGTTCGAACTCGGGATCT TCGCCGTGTA chrXV:464363-464629 - 76 2.46e-09 GAGC TGGGAATTGAACCCAGGGCCT CTCGCATGCT chrX:531701-531801 - 7 3.68e-09 CTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGAT chrVI:180789-181161 + 58 3.68e-09 CTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrX:538451-538551 - 70 4.07e-09 ACGTTCCGTA CGGGACTCGAACCCGCAGTCT TCTCCTTAGG chrXIII:572734-573115 + 18 5.42e-09 GTGCTCCAGG GGAGGTTCGAACTCTCGACCT TCAGATTATG chrXV:976353-976586 - 45 5.42e-09 TTGCTCCAGG GGAGGTTCGAACTCTCGACCT TCAGATTATG chrIV:1175680-1176009 - 78 5.42e-09 GG GGAGGTTCGAACTCTCGACCT TCAGATTATG chrVI:137352-137694 + 22 8.57e-09 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrXV:487321-487725 - 10 8.57e-09 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAA chrXIV:102573-102924 - 62 8.57e-09 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrVII:731000-731340 - 61 8.57e-09 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrXII:656838-657139 + 5 9.35e-09 GAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrVI:167299-167638 - 78 1.32e-08 GG GGCGAGTCGAACGCCCGATCT CAAGATTTCG chrXIII:168710-169042 - 28 1.32e-08 ATCTCCCGGG GGCGAGTCGAACGCCCGATCT CAAGATTTCG chrXVI:560075-560438 + 1 1.55e-08 . TGTGGATCGAACACAGGACCT CCAGATAACT chrVIII:237728-238078 + 4 1.55e-08 TTC TGTGGATCGAACACAGGACCT CCAGATAACT chrVII:823360-823639 - 77 2.14e-08 CGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXV:663682-664012 + 24 2.14e-08 ACGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrIV:434185-434441 + 10 2.68e-08 TGCTTCCAA TCGGATTTGAACCGATGATCT CCACATTACT chrII:266227-266618 - 49 2.68e-08 ATGCTTCCAA TCGGATTTGAACCGATGATCT CCACATTACT chrX:204585-204685 - 58 5.82e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrX:541408-541508 - 61 5.82e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrV:250262-250452 - 21 5.82e-08 AAGGTCCTAC CCGGATTCGAACCGGGGTTGT CCGGATCAAA chrVII:1004097-1004364 - 78 1.29e-07 TG TCAGAATTGAACTAACGACCT TTGCATTACA chrXVI:435769-436125 + 5 1.52e-07 GCAC TCAGGATCGAACTAAGGACCA ACAGATTTGC chrVIII:62611-62928 - 78 4.76e-07 TC CTAGAATCGAACCAGGGTTTC ATCGGCCACA chrVII:110475-110808 + 43 4.76e-07 TTGCCATCTC CTAGAATCGAACCAGGGTTTC ATCGGCCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGRGRVTCGAACCCVKGAYCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:480511-480832 6e-12 8_[+2]_71 chrX:414832-414932 6e-12 75_[-2]_4 chrV:135297-135609 6e-12 30_[+2]_49 chrVII:185592-185911 6e-12 21_[+2]_58 chrVI:226592-226869 6e-12 16_[+2]_63 chrIV:1201601-1201934 6e-12 75_[-2]_4 chrXVI:581917-582234 6e-12 79_[-2] chrVII:876259-876576 6e-12 69_[-2]_10 chrXIV:631772-632012 7.4e-12 12_[+2]_67 chrVIII:475607-475906 1.2e-10 8_[+2]_71 chrVII:405412-405648 1.4e-10 31_[-2]_48 chrVII:828552-828959 1.4e-10 26_[+2]_53 chrX:374297-374397 1.4e-10 45_[+2]_34 chrX:355203-355303 1.4e-10 21_[-2]_58 chrII:405704-406121 1.4e-10 57_[-2]_22 chrIV:568744-569134 1.4e-10 34_[-2]_45 chrXII:1051989-1052215 2.9e-10 27_[+2]_52 chrXIV:569799-569986 2.9e-10 33_[+2]_46 chrXVI:819369-819755 2.9e-10 60_[-2]_19 chrI:166145-166451 4.3e-10 61_[-2]_18 chrVII:401335-401739 5.6e-10 48_[+2]_31 chrIV:1017079-1017445 5.6e-10 3_[+2]_76 chrV:176954-177346 5.6e-10 40_[-2]_39 chrV:487247-487518 5.6e-10 7_[+2]_72 chrXI:578830-579268 7.1e-10 31_[-2]_48 chrXV:110858-111138 8e-10 22_[+2]_57 chrXIV:96142-96439 8e-10 9_[+2]_70 chrIV:488577-488995 1.6e-09 69_[+2]_10 chrXV:464363-464629 2.5e-09 75_[-2]_4 chrX:531701-531801 3.7e-09 6_[-2]_73 chrVI:180789-181161 3.7e-09 57_[+2]_22 chrX:538451-538551 4.1e-09 69_[-2]_10 chrXIII:572734-573115 5.4e-09 17_[+2]_62 chrXV:976353-976586 5.4e-09 44_[-2]_35 chrIV:1175680-1176009 5.4e-09 77_[-2]_2 chrVI:137352-137694 8.6e-09 21_[+2]_58 chrXV:487321-487725 8.6e-09 9_[-2]_70 chrXIV:102573-102924 8.6e-09 61_[-2]_18 chrVII:731000-731340 8.6e-09 60_[-2]_19 chrXII:656838-657139 9.4e-09 4_[+2]_75 chrVI:167299-167638 1.3e-08 77_[-2]_2 chrXIII:168710-169042 1.3e-08 27_[-2]_52 chrXVI:560075-560438 1.6e-08 [+2]_79 chrVIII:237728-238078 1.6e-08 3_[+2]_76 chrVII:823360-823639 2.1e-08 76_[-2]_3 chrXV:663682-664012 2.1e-08 23_[+2]_56 chrIV:434185-434441 2.7e-08 9_[+2]_70 chrII:266227-266618 2.7e-08 48_[-2]_31 chrX:204585-204685 5.8e-08 57_[-2]_22 chrX:541408-541508 5.8e-08 60_[-2]_19 chrV:250262-250452 5.8e-08 20_[-2]_59 chrVII:1004097-1004364 1.3e-07 77_[-2]_2 chrXVI:435769-436125 1.5e-07 4_[+2]_75 chrVIII:62611-62928 4.8e-07 77_[-2]_2 chrVII:110475-110808 4.8e-07 42_[+2]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGRGRVTCGAACCCVKGAYCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BGRGRVTCGAACCCVKGAYCT width=21 seqs=55 chrXIII:480511-480832 ( 9) GGGGGCTCGAACCCCTAACCT 1 chrX:414832-414932 ( 76) GGGGGCTCGAACCCCTAACCT 1 chrV:135297-135609 ( 31) GGGGGCTCGAACCCCTAACCT 1 chrVII:185592-185911 ( 22) GGGGGCTCGAACCCCTAACCT 1 chrVI:226592-226869 ( 17) GGGGGCTCGAACCCCTAACCT 1 chrIV:1201601-1201934 ( 76) GGGGGCTCGAACCCCTAACCT 1 chrXVI:581917-582234 ( 80) GGGGGCTCGAACCCCTAACCT 1 chrVII:876259-876576 ( 70) GGGGGCTCGAACCCCTAACCT 1 chrXIV:631772-632012 ( 13) CGGGACTCGAACCCGGGACCT 1 chrVIII:475607-475906 ( 9) CGAGGATCGAACTCGGGACCT 1 chrVII:405412-405648 ( 32) TGGGGGTCGAACCCATAATCT 1 chrVII:828552-828959 ( 27) TGGGGGTCGAACCCATAATCT 1 chrX:374297-374397 ( 46) TGGGGGTCGAACCCATAATCT 1 chrX:355203-355303 ( 22) TGGGGGTCGAACCCATAATCT 1 chrII:405704-406121 ( 58) TGGGGGTCGAACCCATAATCT 1 chrIV:568744-569134 ( 35) TGGGGGTCGAACCCATAATCT 1 chrXII:1051989-1052215 ( 28) GCGGGATCGAACCGCTGATCC 1 chrXIV:569799-569986 ( 34) GCGGGATCGAACCGCTGATCC 1 chrXVI:819369-819755 ( 61) GCGGGATCGAACCGCTGATCC 1 chrI:166145-166451 ( 62) CCGGAATCGAACCGATGACCT 1 chrVII:401335-401739 ( 49) GGGGAGTCGAACCCCGGTCTC 1 chrIV:1017079-1017445 ( 4) GGGGAGTCGAACCCCGGTCTC 1 chrV:176954-177346 ( 41) GGGGAGTCGAACCCCGGTCTC 1 chrV:487247-487518 ( 8) GGGGAGTCGAACCCCGGTCTC 1 chrXI:578830-579268 ( 32) GGGGGCTCGAACCCCTGACAT 1 chrXV:110858-111138 ( 23) CGAGAATCGAACCCGTGTCCC 1 chrXIV:96142-96439 ( 10) CGAGAATCGAACCCGTGTCCC 1 chrIV:488577-488995 ( 70) CGAGGTTCGAACTCGGGATCT 1 chrXV:464363-464629 ( 76) TGGGAATTGAACCCAGGGCCT 1 chrX:531701-531801 ( 7) CCGGAATCGAACCGGGGGCCC 1 chrVI:180789-181161 ( 58) CCGGAATCGAACCGGGGGCCC 1 chrX:538451-538551 ( 70) CGGGACTCGAACCCGCAGTCT 1 chrXIII:572734-573115 ( 18) GGAGGTTCGAACTCTCGACCT 1 chrXV:976353-976586 ( 45) GGAGGTTCGAACTCTCGACCT 1 chrIV:1175680-1176009 ( 78) GGAGGTTCGAACTCTCGACCT 1 chrVI:137352-137694 ( 22) TGAGGGTTGAACTCACGATCT 1 chrXV:487321-487725 ( 10) TGAGGGTTGAACTCACGATCT 1 chrXIV:102573-102924 ( 62) TGAGGGTTGAACTCACGATCT 1 chrVII:731000-731340 ( 61) TGAGGGTTGAACTCACGATCT 1 chrXII:656838-657139 ( 5) CCGGAATCGAACCGGAGACCT 1 chrVI:167299-167638 ( 78) GGCGAGTCGAACGCCCGATCT 1 chrXIII:168710-169042 ( 28) GGCGAGTCGAACGCCCGATCT 1 chrXVI:560075-560438 ( 1) TGTGGATCGAACACAGGACCT 1 chrVIII:237728-238078 ( 4) TGTGGATCGAACACAGGACCT 1 chrVII:823360-823639 ( 77) CCAGGATCGAACTGGGGACGT 1 chrXV:663682-664012 ( 24) CCAGGATCGAACTGGGGACGT 1 chrIV:434185-434441 ( 10) TCGGATTTGAACCGATGATCT 1 chrII:266227-266618 ( 49) TCGGATTTGAACCGATGATCT 1 chrX:204585-204685 ( 58) GGGGAATTGAACCCCGATCTG 1 chrX:541408-541508 ( 61) GGGGAATTGAACCCCGATCTG 1 chrV:250262-250452 ( 21) CCGGATTCGAACCGGGGTTGT 1 chrVII:1004097-1004364 ( 78) TCAGAATTGAACTAACGACCT 1 chrXVI:435769-436125 ( 5) TCAGGATCGAACTAAGGACCA 1 chrVIII:62611-62928 ( 78) CTAGAATCGAACCAGGGTTTC 1 chrVII:110475-110808 ( 43) CTAGAATCGAACCAGGGTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGRGRVTCGAACCCVKGAYCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 46080 bayes= 11.3703 E= 6.2e-176 -1243 51 113 0 -1243 41 189 -308 0 -240 169 -308 -1243 -1243 238 -1243 44 -1243 160 -1243 31 6 60 -128 -1243 -1243 -1243 170 -1243 209 -1243 -76 -1243 -1243 238 -1243 170 -1243 -1243 -1243 170 -1243 -1243 -1243 -1243 238 -1243 -1243 -308 185 -240 -38 -208 189 19 -1243 9 92 41 -250 -408 6 92 44 0 -1243 185 -1243 124 -1243 -140 -62 -1243 165 -1243 38 -408 203 -181 -108 -408 30 -240 120 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGRGRVTCGAACCCVKGAYCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 55 E= 6.2e-176 0.000000 0.272727 0.418182 0.309091 0.000000 0.254545 0.709091 0.036364 0.309091 0.036364 0.618182 0.036364 0.000000 0.000000 1.000000 0.000000 0.418182 0.000000 0.581818 0.000000 0.381818 0.200000 0.290909 0.127273 0.000000 0.000000 0.000000 1.000000 0.000000 0.818182 0.000000 0.181818 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.036364 0.690909 0.036364 0.236364 0.072727 0.709091 0.218182 0.000000 0.327273 0.363636 0.254545 0.054545 0.018182 0.200000 0.363636 0.418182 0.309091 0.000000 0.690909 0.000000 0.727273 0.000000 0.072727 0.200000 0.000000 0.600000 0.000000 0.400000 0.018182 0.781818 0.054545 0.145455 0.018182 0.236364 0.036364 0.709091 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGRGRVTCGAACCCVKGAYCT MEME-2 regular expression -------------------------------------------------------------------------------- [GTC][GC][GA]G[GA][AGC]TCGAAC[CT][CG][CAG][TGC][GA][AT][CT]C[TC] -------------------------------------------------------------------------------- Time 620.07 secs. ******************************************************************************** ******************************************************************************** MOTIF AADWGGYYBBDTGGCCNAGTB MEME-3 width = 21 sites = 76 llr = 1004 E-value = 1.4e-116 ******************************************************************************** -------------------------------------------------------------------------------- Motif AADWGGYYBBDTGGCCNAGTB MEME-3 Description -------------------------------------------------------------------------------- Simplified A 6544:112113:1::12a2:: pos.-specific C 1111:24333::::762::13 probability G 113:a721323:9a:33:8:4 matrix T 1235::45344a::3:3::93 bits 2.4 * * 2.1 * * 1.9 * ** 1.7 * *** ** Relative 1.4 * *** *** Entropy 1.2 ** **** *** (19.1 bits) 1.0 ** ***** *** 0.7 ** ***** **** 0.5 *** ***** **** 0.2 ** ************* **** 0.0 --------------------- Multilevel AAATGGTTTTTTGGCCGAGTG consensus TGA CCCCCA TGT C sequence T G G A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADWGGYYBBDTGGCCNAGTB MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIII:227783-228151 + 21 6.10e-10 TTTCAAATCG AAATGGCACTATGGCCGAGTG GTTAAGGCGA chrXI:308072-308348 - 41 1.96e-09 TTCAACAATT AAGTGGTTTCGTGGTCTAGTC GGTTATGGCA chrVIII:132955-133257 - 35 2.98e-09 CTTATATAAT AAGTGGCAACTTGGCCGAGTG GTTAAGGCGA chrVII:857303-857634 - 57 3.65e-09 TTCAACAAAT AAGTGGTTGTTTGGCCGAGCG GTCTAAGGCG chrXII:628227-628600 + 16 3.65e-09 TACAACAAAT AAGTGGTTGTTTGGCCGAGCG GTCTAAGGCG chrVII:205367-205703 + 32 3.65e-09 ACATACAAAT AAGTGGTTGTTTGGCCGAGCG GTCTAAGGCG chrVII:738946-739282 + 54 4.45e-09 TTCCGAAAAA AATAGGTCTCTTGGCCCAGTT GGTTAAGGCA chrVII:774185-774519 + 43 1.12e-08 TTCATCAATT AATTGGGCGTGTGGCGTAGTC GGTAGCGCGC chrXI:379536-379823 + 47 1.12e-08 TTTACAGATT AATAGGTTTCGTGGTCTAGTC GGTTATGGCA chrXII:656838-657139 - 52 1.12e-08 ACAACAAGAA AATTGGGCGTGTGGCGTAGTC GGTAGCGCGC chrXVI:819369-819755 + 13 1.12e-08 TTCAACAATA GAATGGTCTCTTGGCCCAGTT GGTTAAGGCA chrVII:412202-412514 - 43 1.56e-08 AACATCAAAA AACTGGTTTCGTGGTCTAGTC GGTTATGGCA chrX:617763-617863 + 43 1.84e-08 ATTCAACAAA CAATGGGAGTTTGGCCGAGTG GTTTAAGGCG chrVII:823360-823639 + 29 1.84e-08 CTTCCAATAA GAGTGGTTTCGTGGTCTAGTC GGTTATGGCA chrXII:592440-592733 - 67 1.84e-08 TTTCAACATA CAATGGGAGTTTGGCCGAGTG GTTTAAGGCG chrV:288340-288668 - 54 2.53e-08 AATTCATAAT GATAGGCACTATGGCCGAGTG GTTAAGGCGA chrXV:663682-664012 - 72 2.53e-08 TCAACAAA TAGTGGTTTCGTGGTCTAGTC GGTTATGGCA chrII:226942-227262 + 19 3.98e-08 ATCATGTAAA ACGAGGCAACTTGGCCGAGTG GTTAAGGCGA chrVIII:388803-389169 - 43 5.30e-08 ACCAACAGAT ACATGGGCGTGTGGTCTAGTG GTATGATTCT chrIII:127564-127884 + 38 6.10e-08 ACACAAGATA AAATGACTCCATGGCCAAGTT GGTTAAGGCG chrXII:734647-734965 + 42 6.99e-08 ATTCAACAAA GTTTGGTCTCTTGGCCCAGTT GGTTAAGGCA chrXII:1051989-1052215 - 76 7.99e-08 CTTT TCATGGTCTCTTGGCCCAGTT GGTTAAGGCA chrXIII:372379-372638 - 44 7.99e-08 TTTCAATAAA ACCTGGTTTCGTGGTCTAGTC GGTTATGGCA chrX:197218-197318 - 43 7.99e-08 TATCAATAAT ATTAGGGCGTGTGGCGTAGTC GGTAGCGCGC chrX:523910-524010 - 48 7.99e-08 CTCAAGAGAT TAAAGGCAACTTGGCCGAGTG GTTAAGGCGA chrIV:410263-410516 + 36 9.11e-08 ACCATACAAA TATTGGGCGTGTGGCGTAGTC GGTAGCGCGC chrXIV:568004-568303 + 8 1.04e-07 ATAAAAT AATCGGGCGTGTGGTCTAGTG GTATGATTCT chrVII:731000-731340 + 13 1.04e-07 AACATAGTCA AAAAGACTCCATGGCCAAGTT GGTTAAGGCG chrII:266227-266618 + 2 1.04e-07 A AACTGCTTCTATGGCCAAGTT GGTAAGGCGC chrXI:517826-518132 + 55 1.18e-07 AATATATCTA CTATGGGCGTGTGGCGTAGTC GGTAGCGCGC chrXIII:259070-259387 - 45 1.18e-07 AATCAAGTTA GTATGGCAACTTGGCCGAGTG GTTAAGGCGA chrIX:248686-249065 + 21 1.18e-07 CCTACATTGT TTTAGGCACTATGGCCGAGTG GTTAAGGCGA chrII:197344-197648 + 44 1.33e-07 TAACCAGTAA TCAAGGTCTCTTGGCCCAGTT GGTTAAGGCA chrIX:174962-175120 + 36 1.70e-07 ACCAACAAGT ACGAGCTTCTATGGCCAAGTT GGTAAGGCGC chrIV:434185-434441 - 57 1.70e-07 AACACAAATC AGAAGCTTCTATGGCCAAGTT GGTAAGGCGC chrX:59033-59133 - 39 1.70e-07 AATATAAAAT AGAAGCTTCTATGGCCAAGTT GGTAAGGCGC chrIV:437630-437930 + 38 1.91e-07 TTCATCATTA GTAAGGCAACTTGGCCGAGTG GTTAAGGCGA chrIV:1305487-1305763 + 51 2.40e-07 ACAATACAAA TTAAGGCAACTTGGCCGAGTG GTTAAGGCGA chrVI:226592-226869 - 64 2.40e-07 CCAGAGATTA AAATGCCTTGTTGGCGCAATC GGTAGCGCGT chrVIII:116015-116349 - 31 2.40e-07 CTATCACTAA TAGAGCTTCTATGGCCAAGTT GGTAAGGCGC chrXIV:102573-102924 + 14 3.00e-07 ATCATATATT ATAAGACTCCATGGCCAAGTT GGTTAAGGCG chrXVI:581917-582234 + 33 3.00e-07 ATTTCAACAA AAGAGCCTTGTTGGCGCAATC GGTAGCGCGT chrX:424365-424465 - 22 3.35e-07 TTTTTAAATA AGATGGAGGGTTGGCCGAGTG GTCTAAGGCG chrV:135297-135609 - 78 3.72e-07 AA AAAAGCCTTGTTGGCGCAATC GGTAGCGCGT chrXV:228165-228489 + 50 4.13e-07 TTCATAAAAT ATTAGACTCCATGGCCAAGTT GGTTAAGGCG chrXI:74493-74769 + 39 4.13e-07 AAATATAGCA ATTAGACTCCATGGCCAAGTT GGTTAAGGCG chrI:166145-166451 + 15 4.13e-07 TATTGTAATG AGTTGGGCACATGGCGCAGTT GGTAGCGCGC chrVII:185592-185911 - 69 5.07e-07 TTTTCAACGA AATAGCCTTGTTGGCGCAATC GGTAGCGCGT chrIV:1201601-1201934 + 29 5.07e-07 GTCACAAATA AATAGCCTTGTTGGCGCAATC GGTAGCGCGT chrVII:876259-876576 + 23 5.07e-07 CCAATAATAG AATAGCCTTGTTGGCGCAATC GGTAGCGCGT chrVI:137352-137694 - 70 6.81e-07 ACTCAAAAGT GACTGACTCCATGGCCAAGTT GGTTAAGGCG chrIII:295375-295600 + 43 7.49e-07 ATTCATACAA TTAAGCTTCTATGGCCAAGTT GGTAAGGCGC chrI:139009-139315 + 36 7.49e-07 ACATCAATTA GTACGGGCGTGTGGTCTAGTG GTATGATTCT chrXIII:808156-808463 - 42 9.02e-07 CAACAGAAGA AAAAGGTCCTATAGTGTAGTG GTTATCACTT chrV:131012-131305 - 29 9.87e-07 ATCAATAATT AAGAGGTTTTATAGTGTAGTG GTTATCACTT chrXIII:480511-480832 - 56 1.18e-06 AATAACAATA AGTAGCCTTGTTGGCGCAATC GGTAGCGCGT chrXIV:726061-726311 - 65 1.18e-06 AAGTATAAAT CTTTGGAGGGTTGGCCGAGTG GTCTAAGGCG chrX:414832-414932 + 29 1.18e-06 TTTTCAACGA ATTAGCCTTGTTGGCGCAATC GGTAGCGCGT chrXVI:860231-860546 + 45 1.95e-06 TAACAAGCGC AAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrXV:282017-282313 + 53 1.95e-06 GAAAGCGCGC AAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrIV:992681-992992 + 50 1.95e-06 TTGTGAGCGC AAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrVII:845485-845822 + 50 1.95e-06 TAACAAGCGC AAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrVI:162073-162386 + 53 1.95e-06 AAACAAGCGC AAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrXII:784232-784538 + 15 2.28e-06 ATCGTTGTTC AACCGTCCCAGTGGCCGAGTG GTTAAGGCGA chrXIV:96142-96439 - 56 2.46e-06 ACCATCCAAC ACATGGGCGGTTAGTGTAGTG GTTATCATCC chrXII:962893-963187 - 49 2.65e-06 GTTGTATTAT CGACGGAGGGTTGGCCGAGTG GTCTAAGGCG chrIV:519638-519885 + 28 3.55e-06 GCAAGTGATT TTACGGAGGGTTGGCCGAGTG GTCTAAGGCG chrXV:883615-884019 - 73 4.68e-06 AGGTTTC CATTGGTCCTTTGGTAGGGTC TCAGGATCAA chrXIII:379247-379573 - 24 4.68e-06 AAAGTTGAAG CGGTGGCTCAATGGTAGAGCT TTCGACTCCA chrVII:878617-878947 - 59 4.68e-06 CAAGATGAAG CGGTGGCTCAATGGTAGAGCT TTCGACTCCA chrX:415868-415968 - 29 4.68e-06 AAAGTTGAAG CGGTGGCTCAATGGTAGAGCT TTCGACTCCA chrXI:302760-303133 + 26 4.68e-06 CAAGATGAAG CGGTGGCTCAATGGTAGAGCT TTCGACTCCA chrIV:884227-884562 + 13 6.06e-06 TCTCTTTCGA AAATGCTCGTGTAGCTCAGTG GTTAGAGCTT chrVIII:62611-62928 + 32 8.21e-06 TTGTAAAATC ATATGCCATCTTAGTATAGTG GTTAGTACAC chrXV:110858-111138 - 69 1.03e-05 ATAACAATTA ACCCGGGCGGTTAGTGTAGTG GTTATCATCC chrVIII:134166-134490 + 39 1.48e-05 GACCAGTAAG TTCCGGTCCTATAGTGTAGTG GTTATCACTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADWGGYYBBDTGGCCNAGTB MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:227783-228151 6.1e-10 20_[+3]_59 chrXI:308072-308348 2e-09 40_[-3]_39 chrVIII:132955-133257 3e-09 34_[-3]_45 chrVII:857303-857634 3.7e-09 56_[-3]_23 chrXII:628227-628600 3.7e-09 15_[+3]_64 chrVII:205367-205703 3.7e-09 31_[+3]_48 chrVII:738946-739282 4.5e-09 53_[+3]_26 chrVII:774185-774519 1.1e-08 42_[+3]_37 chrXI:379536-379823 1.1e-08 46_[+3]_33 chrXII:656838-657139 1.1e-08 51_[-3]_28 chrXVI:819369-819755 1.1e-08 12_[+3]_67 chrVII:412202-412514 1.6e-08 42_[-3]_37 chrX:617763-617863 1.8e-08 42_[+3]_37 chrVII:823360-823639 1.8e-08 28_[+3]_51 chrXII:592440-592733 1.8e-08 66_[-3]_13 chrV:288340-288668 2.5e-08 53_[-3]_26 chrXV:663682-664012 2.5e-08 71_[-3]_8 chrII:226942-227262 4e-08 18_[+3]_61 chrVIII:388803-389169 5.3e-08 42_[-3]_37 chrIII:127564-127884 6.1e-08 37_[+3]_42 chrXII:734647-734965 7e-08 41_[+3]_38 chrXII:1051989-1052215 8e-08 75_[-3]_4 chrXIII:372379-372638 8e-08 43_[-3]_36 chrX:197218-197318 8e-08 42_[-3]_37 chrX:523910-524010 8e-08 47_[-3]_32 chrIV:410263-410516 9.1e-08 35_[+3]_44 chrXIV:568004-568303 1e-07 7_[+3]_72 chrVII:731000-731340 1e-07 12_[+3]_67 chrII:266227-266618 1e-07 1_[+3]_78 chrXI:517826-518132 1.2e-07 54_[+3]_25 chrXIII:259070-259387 1.2e-07 44_[-3]_35 chrIX:248686-249065 1.2e-07 20_[+3]_59 chrII:197344-197648 1.3e-07 43_[+3]_36 chrIX:174962-175120 1.7e-07 35_[+3]_44 chrIV:434185-434441 1.7e-07 56_[-3]_23 chrX:59033-59133 1.7e-07 38_[-3]_41 chrIV:437630-437930 1.9e-07 37_[+3]_42 chrIV:1305487-1305763 2.4e-07 50_[+3]_29 chrVI:226592-226869 2.4e-07 63_[-3]_16 chrVIII:116015-116349 2.4e-07 30_[-3]_49 chrXIV:102573-102924 3e-07 13_[+3]_66 chrXVI:581917-582234 3e-07 32_[+3]_47 chrX:424365-424465 3.3e-07 21_[-3]_58 chrV:135297-135609 3.7e-07 77_[-3]_2 chrXV:228165-228489 4.1e-07 49_[+3]_30 chrXI:74493-74769 4.1e-07 38_[+3]_41 chrI:166145-166451 4.1e-07 14_[+3]_65 chrVII:185592-185911 5.1e-07 68_[-3]_11 chrIV:1201601-1201934 5.1e-07 28_[+3]_51 chrVII:876259-876576 5.1e-07 22_[+3]_57 chrVI:137352-137694 6.8e-07 69_[-3]_10 chrIII:295375-295600 7.5e-07 42_[+3]_37 chrI:139009-139315 7.5e-07 35_[+3]_44 chrXIII:808156-808463 9e-07 41_[-3]_38 chrV:131012-131305 9.9e-07 28_[-3]_51 chrXIII:480511-480832 1.2e-06 55_[-3]_24 chrXIV:726061-726311 1.2e-06 64_[-3]_15 chrX:414832-414932 1.2e-06 28_[+3]_51 chrXVI:860231-860546 1.9e-06 44_[+3]_35 chrXV:282017-282313 1.9e-06 52_[+3]_27 chrIV:992681-992992 1.9e-06 49_[+3]_30 chrVII:845485-845822 1.9e-06 49_[+3]_30 chrVI:162073-162386 1.9e-06 52_[+3]_27 chrXII:784232-784538 2.3e-06 14_[+3]_65 chrXIV:96142-96439 2.5e-06 55_[-3]_24 chrXII:962893-963187 2.7e-06 48_[-3]_31 chrIV:519638-519885 3.6e-06 27_[+3]_52 chrXV:883615-884019 4.7e-06 72_[-3]_7 chrXIII:379247-379573 4.7e-06 23_[-3]_56 chrVII:878617-878947 4.7e-06 58_[-3]_21 chrX:415868-415968 4.7e-06 28_[-3]_51 chrXI:302760-303133 4.7e-06 25_[+3]_54 chrIV:884227-884562 6.1e-06 12_[+3]_67 chrVIII:62611-62928 8.2e-06 31_[+3]_48 chrXV:110858-111138 1e-05 68_[-3]_11 chrVIII:134166-134490 1.5e-05 38_[+3]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADWGGYYBBDTGGCCNAGTB MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AADWGGYYBBDTGGCCNAGTB width=21 seqs=76 chrIII:227783-228151 ( 21) AAATGGCACTATGGCCGAGTG 1 chrXI:308072-308348 ( 41) AAGTGGTTTCGTGGTCTAGTC 1 chrVIII:132955-133257 ( 35) AAGTGGCAACTTGGCCGAGTG 1 chrVII:857303-857634 ( 57) AAGTGGTTGTTTGGCCGAGCG 1 chrXII:628227-628600 ( 16) AAGTGGTTGTTTGGCCGAGCG 1 chrVII:205367-205703 ( 32) AAGTGGTTGTTTGGCCGAGCG 1 chrVII:738946-739282 ( 54) AATAGGTCTCTTGGCCCAGTT 1 chrVII:774185-774519 ( 43) AATTGGGCGTGTGGCGTAGTC 1 chrXI:379536-379823 ( 47) AATAGGTTTCGTGGTCTAGTC 1 chrXII:656838-657139 ( 52) AATTGGGCGTGTGGCGTAGTC 1 chrXVI:819369-819755 ( 13) GAATGGTCTCTTGGCCCAGTT 1 chrVII:412202-412514 ( 43) AACTGGTTTCGTGGTCTAGTC 1 chrX:617763-617863 ( 43) CAATGGGAGTTTGGCCGAGTG 1 chrVII:823360-823639 ( 29) GAGTGGTTTCGTGGTCTAGTC 1 chrXII:592440-592733 ( 67) CAATGGGAGTTTGGCCGAGTG 1 chrV:288340-288668 ( 54) GATAGGCACTATGGCCGAGTG 1 chrXV:663682-664012 ( 72) TAGTGGTTTCGTGGTCTAGTC 1 chrII:226942-227262 ( 19) ACGAGGCAACTTGGCCGAGTG 1 chrVIII:388803-389169 ( 43) ACATGGGCGTGTGGTCTAGTG 1 chrIII:127564-127884 ( 38) AAATGACTCCATGGCCAAGTT 1 chrXII:734647-734965 ( 42) GTTTGGTCTCTTGGCCCAGTT 1 chrXII:1051989-1052215 ( 76) TCATGGTCTCTTGGCCCAGTT 1 chrXIII:372379-372638 ( 44) ACCTGGTTTCGTGGTCTAGTC 1 chrX:197218-197318 ( 43) ATTAGGGCGTGTGGCGTAGTC 1 chrX:523910-524010 ( 48) TAAAGGCAACTTGGCCGAGTG 1 chrIV:410263-410516 ( 36) TATTGGGCGTGTGGCGTAGTC 1 chrXIV:568004-568303 ( 8) AATCGGGCGTGTGGTCTAGTG 1 chrVII:731000-731340 ( 13) AAAAGACTCCATGGCCAAGTT 1 chrII:266227-266618 ( 2) AACTGCTTCTATGGCCAAGTT 1 chrXI:517826-518132 ( 55) CTATGGGCGTGTGGCGTAGTC 1 chrXIII:259070-259387 ( 45) GTATGGCAACTTGGCCGAGTG 1 chrIX:248686-249065 ( 21) TTTAGGCACTATGGCCGAGTG 1 chrII:197344-197648 ( 44) TCAAGGTCTCTTGGCCCAGTT 1 chrIX:174962-175120 ( 36) ACGAGCTTCTATGGCCAAGTT 1 chrIV:434185-434441 ( 57) AGAAGCTTCTATGGCCAAGTT 1 chrX:59033-59133 ( 39) AGAAGCTTCTATGGCCAAGTT 1 chrIV:437630-437930 ( 38) GTAAGGCAACTTGGCCGAGTG 1 chrIV:1305487-1305763 ( 51) TTAAGGCAACTTGGCCGAGTG 1 chrVI:226592-226869 ( 64) AAATGCCTTGTTGGCGCAATC 1 chrVIII:116015-116349 ( 31) TAGAGCTTCTATGGCCAAGTT 1 chrXIV:102573-102924 ( 14) ATAAGACTCCATGGCCAAGTT 1 chrXVI:581917-582234 ( 33) AAGAGCCTTGTTGGCGCAATC 1 chrX:424365-424465 ( 22) AGATGGAGGGTTGGCCGAGTG 1 chrV:135297-135609 ( 78) AAAAGCCTTGTTGGCGCAATC 1 chrXV:228165-228489 ( 50) ATTAGACTCCATGGCCAAGTT 1 chrXI:74493-74769 ( 39) ATTAGACTCCATGGCCAAGTT 1 chrI:166145-166451 ( 15) AGTTGGGCACATGGCGCAGTT 1 chrVII:185592-185911 ( 69) AATAGCCTTGTTGGCGCAATC 1 chrIV:1201601-1201934 ( 29) AATAGCCTTGTTGGCGCAATC 1 chrVII:876259-876576 ( 23) AATAGCCTTGTTGGCGCAATC 1 chrVI:137352-137694 ( 70) GACTGACTCCATGGCCAAGTT 1 chrIII:295375-295600 ( 43) TTAAGCTTCTATGGCCAAGTT 1 chrI:139009-139315 ( 36) GTACGGGCGTGTGGTCTAGTG 1 chrXIII:808156-808463 ( 42) AAAAGGTCCTATAGTGTAGTG 1 chrV:131012-131305 ( 29) AAGAGGTTTTATAGTGTAGTG 1 chrXIII:480511-480832 ( 56) AGTAGCCTTGTTGGCGCAATC 1 chrXIV:726061-726311 ( 65) CTTTGGAGGGTTGGCCGAGTG 1 chrX:414832-414932 ( 29) ATTAGCCTTGTTGGCGCAATC 1 chrXVI:860231-860546 ( 45) AAGTGGTTTAGTGGTAAAATC 1 chrXV:282017-282313 ( 53) AAGTGGTTTAGTGGTAAAATC 1 chrIV:992681-992992 ( 50) AAGTGGTTTAGTGGTAAAATC 1 chrVII:845485-845822 ( 50) AAGTGGTTTAGTGGTAAAATC 1 chrVI:162073-162386 ( 53) AAGTGGTTTAGTGGTAAAATC 1 chrXII:784232-784538 ( 15) AACCGTCCCAGTGGCCGAGTG 1 chrXIV:96142-96439 ( 56) ACATGGGCGGTTAGTGTAGTG 1 chrXII:962893-963187 ( 49) CGACGGAGGGTTGGCCGAGTG 1 chrIV:519638-519885 ( 28) TTACGGAGGGTTGGCCGAGTG 1 chrXV:883615-884019 ( 73) CATTGGTCCTTTGGTAGGGTC 1 chrXIII:379247-379573 ( 24) CGGTGGCTCAATGGTAGAGCT 1 chrVII:878617-878947 ( 59) CGGTGGCTCAATGGTAGAGCT 1 chrX:415868-415968 ( 29) CGGTGGCTCAATGGTAGAGCT 1 chrXI:302760-303133 ( 26) CGGTGGCTCAATGGTAGAGCT 1 chrIV:884227-884562 ( 13) AAATGCTCGTGTAGCTCAGTG 1 chrVIII:62611-62928 ( 32) ATATGCCATCTTAGTATAGTG 1 chrXV:110858-111138 ( 69) ACCCGGGCGGTTAGTGTAGTG 1 chrVIII:134166-134490 ( 39) TTCCGGTCCTATAGTGTAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADWGGYYBBDTGGCCNAGTB MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 46080 bayes= 9.43666 E= 1.4e-116 100 -54 -86 -109 81 -86 -54 -46 26 -106 53 -23 26 -106 -1289 81 -1289 -1289 238 -1289 -197 14 186 -455 -255 99 -16 36 -97 53 -186 73 -174 66 46 15 -123 78 -6 20 -3 -1289 53 45 -1289 -1289 -1289 170 -174 -1289 224 -1289 -1289 -1289 238 -1289 -1289 181 -1289 9 -109 163 38 -455 -46 4 72 -23 168 -1289 -386 -1289 -85 -1289 211 -1289 -1289 -106 -1289 156 -1289 78 99 -9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADWGGYYBBDTGGCCNAGTB MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 76 E= 1.4e-116 0.618421 0.131579 0.105263 0.144737 0.539474 0.105263 0.131579 0.223684 0.368421 0.092105 0.276316 0.263158 0.368421 0.092105 0.000000 0.539474 0.000000 0.000000 1.000000 0.000000 0.078947 0.210526 0.697368 0.013158 0.052632 0.381579 0.171053 0.394737 0.157895 0.276316 0.052632 0.513158 0.092105 0.302632 0.263158 0.342105 0.131579 0.328947 0.184211 0.355263 0.302632 0.000000 0.276316 0.421053 0.000000 0.000000 0.000000 1.000000 0.092105 0.000000 0.907895 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.671053 0.000000 0.328947 0.144737 0.592105 0.250000 0.013158 0.223684 0.197368 0.315789 0.263158 0.986842 0.000000 0.013158 0.000000 0.171053 0.000000 0.828947 0.000000 0.000000 0.092105 0.000000 0.907895 0.000000 0.328947 0.381579 0.289474 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADWGGYYBBDTGGCCNAGTB MEME-3 regular expression -------------------------------------------------------------------------------- A[AT][AGT][TA]G[GC][TC][TC][TCG][TC][TAG]TGG[CT][CG][GTA]AGT[GCT] -------------------------------------------------------------------------------- Time 908.14 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:424365-424465 9.70e-05 21_[-3(3.35e-07)]_58 chrV:77614-77823 3.76e-01 100 chrIV:1449855-1450259 1.48e-01 100 chrXII:370660-370841 1.98e-01 100 chrXV:444862-446096 1.39e-01 100 chrXV:671053-671407 1.46e-02 100 chrIV:1359475-1359736 8.96e-01 100 chrXV:605686-606090 6.92e-02 100 chrII:144453-144857 7.19e-01 100 chrVIII:35464-35772 2.55e-01 100 chrIV:541306-541629 1.70e-01 100 chrV:492281-492429 2.50e-02 55_[+2(2.80e-05)]_24 chrXV:288035-288350 2.01e-02 68_[+1(5.64e-05)]_9 chrIX:248686-249065 5.35e-10 20_[+3(1.18e-07)]_[+1(2.14e-09)]_36 chrX:451134-451234 5.79e-01 100 chrVI:157869-158173 1.53e-01 19_[-3(6.54e-05)]_60 chrII:169072-169476 8.41e-01 100 chrXIV:301704-301994 3.13e-02 100 chrXII:637807-638054 4.67e-01 100 chrVI:180789-181161 3.30e-06 57_[+2(3.68e-09)]_22 chrXI:109627-110031 9.93e-01 100 chrVII:876259-876576 1.08e-18 22_[+3(5.07e-07)]_[+1(7.31e-11)]_3_\ [-2(5.98e-12)]_10 chrVIII:388803-389169 9.32e-05 42_[-3(5.30e-08)]_37 chrXI:163765-163978 5.85e-02 100 chrXI:113086-113490 5.60e-01 100 chrIX:177713-177906 6.77e-02 100 chrIX:390007-390709 4.59e-01 100 chrXII:47515-47919 6.31e-01 100 chrXV:1027925-1028155 6.90e-01 100 chrXVI:400727-401131 7.04e-01 100 chrX:608763-608863 1.48e-01 56_[+3(5.79e-05)]_23 chrX:26292-26392 1.26e-01 100 chrXII:712457-712861 3.84e-01 100 chrXIII:808156-808463 5.39e-05 41_[-3(9.02e-07)]_38 chrI:139009-139315 8.94e-04 35_[+3(7.49e-07)]_44 chrXII:794041-794981 1.49e-01 100 chrVIII:132955-133257 1.00e-09 11_[-1(5.37e-08)]_[-3(2.98e-09)]_45 chrII:408732-409136 2.33e-01 100 chrXIV:776780-777048 1.97e-01 100 chrII:256522-256926 8.95e-01 100 chrV:225489-225699 8.65e-01 100 chrXII:780874-781278 3.47e-01 100 chrXII:793739-794067 1.81e-01 100 chrVIII:451518-452411 5.57e-01 100 chrIV:1239766-1240170 9.75e-01 100 chrXII:930745-931149 3.39e-01 100 chrX:444151-444251 2.11e-01 100 chrIV:846002-846406 2.08e-02 34_[-2(8.88e-05)]_45 chrVII:661583-661906 2.51e-07 70_[+1(9.35e-09)]_7 chrIV:230437-230841 9.63e-01 100 chrXV:254355-254759 9.99e-01 100 chrXII:592440-592733 1.79e-07 42_[-1(9.76e-06)]_1_[-3(1.84e-08)]_\ 13 chrVII:279457-279861 6.94e-01 100 chrXV:900158-900562 8.71e-01 100 chrXI:356154-356335 5.13e-01 100 chrII:681207-681698 5.25e-01 100 chrXIII:162165-162569 2.22e-01 100 chrVII:625198-625433 3.77e-01 100 chrXII:232185-234035 7.09e-01 100 chrVII:788426-788660 1.69e-01 100 chrXVI:377917-378321 9.46e-01 100 chrVII:479334-479738 3.36e-01 100 chrXV:677980-678384 3.34e-01 100 chrXI:259628-259799 7.81e-01 100 chrXIV:585877-586491 9.59e-01 100 chrIII:163525-163808 5.24e-01 100 chrII:135954-136338 9.13e-02 100 chrXV:778643-779047 9.70e-01 100 chrXIV:660387-660791 7.56e-01 100 chrVII:480225-480464 7.82e-01 100 chrV:69148-69304 5.66e-02 100 chrXVI:173451-173710 7.83e-01 100 chrXII:86801-87205 1.42e-01 100 chrVI:210517-210864 1.65e-02 25_[-1(5.64e-05)]_52 chrXVI:154080-154484 9.52e-01 100 chrXVI:581917-582234 6.55e-19 32_[+3(3.00e-07)]_[+1(7.31e-11)]_3_\ [-2(5.98e-12)] chrX:703333-703433 9.14e-01 100 chrXIII:259070-259387 2.97e-08 21_[-1(5.37e-08)]_[-3(1.18e-07)]_35 chrIV:1175680-1176009 2.38e-10 51_[+1(6.50e-08)]_3_[-2(5.42e-09)]_\ 2 chrXII:108518-108922 6.88e-01 100 chrVII:1004097-1004364 3.49e-11 51_[+1(9.35e-09)]_3_[-2(1.29e-07)]_\ 2 chrIV:130654-130896 8.39e-01 100 chrV:299492-299896 7.03e-01 100 chrXVI:405036-405788 4.10e-01 100 chrXIII:253405-253568 7.67e-02 100 chrIX:317913-318317 4.75e-01 100 chrIV:1236884-1237087 3.46e-01 100 chrXIII:19623-20027 2.23e-01 100 chrVII:310610-310815 9.05e-01 100 chrXI:458444-458807 3.05e-01 100 chrXIII:556991-557395 1.74e-01 100 chrXII:522753-523157 4.92e-01 100 chrXIV:495260-495488 9.79e-01 100 chrIV:453402-453806 9.39e-01 100 chrVIII:382208-382612 5.69e-01 100 chrVII:205367-205703 3.57e-06 31_[+3(3.65e-09)]_48 chrXV:1015592-1015996 1.04e-01 100 chrV:18762-19166 1.75e-01 100 chrXIII:168710-169042 3.23e-05 27_[-2(1.32e-08)]_52 chrX:652300-652400 8.01e-01 100 chrVII:122287-122691 9.68e-01 100 chrXII:838542-838980 7.59e-01 100 chrV:362870-363274 7.89e-01 100 chrIX:257590-257994 7.53e-01 100 chrXIV:303086-303334 9.31e-01 100 chrIV:525905-526309 7.97e-01 100 chrV:266183-266587 9.06e-01 100 chrIV:472509-472913 6.58e-02 100 chrXI:112884-113288 6.31e-01 100 chrXVI:819369-819755 1.52e-15 12_[+3(1.12e-08)]_1_[+1(1.33e-07)]_\ 3_[-2(2.92e-10)]_19 chrXV:976353-976586 1.19e-09 18_[+1(6.50e-08)]_3_[-2(5.42e-09)]_\ 35 chrXIV:716055-716514 8.65e-01 100 chrXV:663682-664012 1.52e-13 23_[+2(2.14e-08)]_3_[-1(1.03e-07)]_\ 1_[-3(2.53e-08)]_8 chrX:652525-652625 9.99e-01 100 chrIX:395948-396352 5.58e-01 100 chrVII:556990-557394 7.66e-01 100 chrXII:734647-734965 4.50e-08 41_[+3(6.99e-08)]_1_[+1(1.33e-07)]_\ 14 chrIV:221098-221502 6.84e-01 100 chrXI:578830-579268 3.21e-06 31_[-2(7.13e-10)]_23_[-2(8.67e-06)]_\ 4 chrXIII:91043-91447 7.71e-01 100 chrVII:344278-344478 9.16e-01 100 chrXII:628227-628600 3.57e-06 15_[+3(3.65e-09)]_64 chrVIII:382998-383249 6.38e-01 100 chrXIV:631772-632012 2.52e-09 12_[+2(7.37e-12)]_67 chrVII:25051-25455 1.11e-01 100 chrIX:98842-99246 3.22e-01 100 chrXV:1028084-1028488 5.16e-01 100 chrXVI:136225-136629 1.74e-01 100 chrXV:383225-383410 5.33e-01 100 chrIII:138566-138754 4.02e-02 100 chrV:511751-512155 1.93e-01 100 chrXII:720711-721115 5.25e-01 100 chrII:197344-197648 9.74e-08 43_[+3(1.33e-07)]_1_[+1(1.33e-07)]_\ 12 chrX:531701-531801 3.30e-06 6_[-2(3.68e-09)]_73 chrVII:610602-611006 4.47e-01 100 chrXII:656838-657139 1.01e-13 4_[+2(9.35e-09)]_3_[-1(3.44e-07)]_\ [-3(1.12e-08)]_28 chrII:415572-415798 4.69e-01 100 chrXV:723191-723595 5.72e-02 47_[-3(4.62e-05)]_32 chrXII:459508-460147 9.82e-01 100 chrIV:538934-539188 1.24e-01 100 chrX:76003-76103 2.50e-01 100 chrXIV:96142-96439 1.21e-09 9_[+2(8.04e-10)]_25_[-3(2.46e-06)]_\ 24 chrXV:253141-253248 6.19e-01 100 chrX:523910-524010 2.08e-08 24_[-1(5.37e-08)]_[-3(7.99e-08)]_32 chrXII:637148-637411 6.79e-01 100 chrVII:555297-555701 5.66e-01 100 chrXV:391715-391855 6.42e-01 100 chrV:68093-68210 7.28e-01 100 chrVII:561535-561713 9.69e-01 100 chrXII:837837-838413 6.56e-01 100 chrX:442514-442614 8.54e-01 100 chrXV:571816-572117 5.12e-01 100 chrXII:424123-424404 1.22e-01 100 chrIV:323029-323330 7.28e-01 100 chrXII:369280-370062 8.79e-01 100 chrVI:162073-162386 1.21e-03 52_[+3(1.95e-06)]_27 chrV:441830-442580 8.57e-01 100 chrII:89705-89889 8.54e-01 100 chrX:197218-197318 1.38e-07 19_[-1(3.44e-07)]_[-3(7.99e-08)]_37 chrXV:340203-340524 1.11e-03 18_[-1(1.12e-06)]_59 chrVII:883507-883721 4.71e-02 100 chrVII:799702-800106 9.94e-01 100 chrVIII:237728-238078 2.26e-06 3_[+2(1.55e-08)]_45_[-3(9.33e-05)]_\ 10 chrXII:523086-523490 1.35e-01 100 chrXIV:569799-569986 9.20e-12 33_[+2(2.92e-10)]_3_[-1(1.33e-07)]_\ 20 chrXIV:575490-575730 9.33e-01 100 chrIV:1360280-1360684 9.49e-01 100 chrXV:384648-385052 8.16e-01 100 chrIX:26150-26554 6.05e-01 100 chrII:236880-237284 4.48e-01 100 chrVII:544463-544811 6.49e-01 100 chrXVI:718619-718911 7.64e-01 100 chrV:23523-23864 2.56e-01 100 chrIX:316831-317235 7.85e-01 100 chrX:233783-233883 1.29e-03 73_[+1(1.12e-06)]_4 chrII:680360-680568 3.71e-01 100 chrVII:254227-254487 9.34e-01 100 chrXII:856399-856550 6.49e-02 9_[-1(5.45e-05)]_68 chrII:266227-266618 2.37e-16 1_[+3(1.04e-07)]_[+1(2.22e-11)]_3_\ [-2(2.68e-08)]_31 chrIII:90754-91061 1.64e-01 100 chrIX:324216-324532 5.37e-01 100 chrIV:50833-51237 1.40e-01 100 chrVII:877203-877607 9.59e-01 100 chrXV:87791-88195 7.21e-02 100 chrXVI:377093-377497 9.42e-01 100 chrIII:178318-178722 9.79e-01 100 chrVIII:148014-148418 8.16e-01 100 chrIX:316207-316528 3.17e-01 100 chrIV:222026-222215 8.21e-01 100 chrXVI:795417-795821 3.82e-01 100 chrIV:230225-230629 9.91e-01 100 chrIX:389255-389922 5.82e-01 100 chrVII:255238-255642 7.48e-01 100 chrV:397478-397882 4.37e-01 100 chrXII:875228-875574 7.70e-07 41_[+1(1.06e-08)]_36 chrXIII:626515-626657 6.83e-01 100 chrX:662868-662968 3.50e-01 100 chrXI:302760-303133 1.92e-04 25_[+3(4.68e-06)]_54 chrIV:359418-359770 3.65e-07 49_[+1(1.06e-08)]_28 chrXIV:414242-414471 1.15e-01 100 chrIII:246701-246942 5.78e-01 100 chrXIII:302751-303155 7.17e-01 100 chrVII:366156-366435 2.78e-01 100 chrVIII:35720-35869 2.63e-01 100 chrV:85175-85419 5.39e-01 100 chrVI:55160-55564 5.63e-01 100 chrXI:163997-164144 9.00e-01 100 chrVI:167299-167638 2.49e-07 37_[+1(5.64e-05)]_17_[-2(1.32e-08)]_\ 2 chrVII:412202-412514 5.40e-09 18_[-1(1.03e-07)]_1_[-3(1.56e-08)]_\ 37 chrXIV:502253-502657 2.32e-01 100 chrV:61515-62087 9.95e-01 100 chrX:139272-139372 5.33e-01 100 chrVI:55372-55776 9.23e-02 100 chrIV:541552-541956 7.29e-01 100 chrXI:284507-284706 6.10e-01 100 chrXIII:752886-753290 5.63e-01 100 chrX:73966-74066 9.06e-01 100 chrVII:845485-845822 1.21e-03 49_[+3(1.95e-06)]_30 chrV:431065-431519 1.18e-01 100 chrXV:622177-622286 3.11e-01 100 chrXII:95495-95899 3.42e-02 40_[-1(8.72e-05)]_37 chrVII:986859-987138 1.02e-01 100 chrXII:1019080-1019228 2.98e-01 100 chrVII:731000-731340 9.34e-15 12_[+3(1.04e-07)]_1_[+1(3.29e-09)]_\ 3_[-2(8.57e-09)]_19 chrXV:505997-506401 1.85e-01 100 chrV:117806-118215 6.66e-01 100 chrXVI:654348-654752 8.85e-01 100 chrVII:110475-110808 1.69e-04 42_[+2(4.76e-07)]_37 chrXV:1004253-1004657 8.73e-01 100 chrVIII:134166-134490 1.40e-03 38_[+3(1.48e-05)]_41 chrV:140536-140828 7.31e-01 100 chrXIV:63194-63479 4.61e-01 100 chrXIII:163042-163446 2.11e-01 100 chrX:59033-59133 1.35e-11 15_[-1(2.22e-11)]_[-3(1.70e-07)]_41 chrV:269229-269633 7.88e-01 100 chrXV:348900-349304 3.79e-01 100 chrVII:609714-609974 9.29e-01 100 chrVII:599832-600236 6.65e-01 100 chrVIII:452549-453004 7.46e-01 100 chrVII:600870-601274 6.66e-01 100 chrXV:80892-81093 8.96e-01 100 chrV:67231-67635 3.43e-01 100 chrXV:620193-620754 8.49e-01 100 chrI:166145-166451 5.50e-15 14_[+3(4.13e-07)]_[+1(9.35e-09)]_3_\ [-2(4.33e-10)]_18 chrXIV:442875-443286 3.05e-01 100 chrX:422771-422871 4.65e-05 68_[+1(6.50e-08)]_9 chrXIV:500075-500782 1.02e-01 100 chrXII:499280-499495 9.06e-01 100 chrVII:480489-480668 9.98e-01 100 chrXIII:551432-551713 7.92e-01 100 chrXVI:282173-282577 7.42e-01 100 chrXI:334344-334748 2.04e-01 100 chrXV:168063-168352 3.57e-02 100 chrXIV:374753-375025 3.74e-02 25_[+3(5.79e-05)]_54 chrIV:488577-488995 1.35e-05 69_[+2(1.60e-09)]_10 chrVII:319134-319538 2.24e-01 100 chrIV:568744-569134 4.09e-13 8_[+1(5.07e-10)]_3_[-2(1.45e-10)]_\ 45 chrXIII:225456-225679 4.94e-01 100 chrVIII:62611-62928 1.13e-06 31_[+3(8.21e-06)]_25_[-2(4.76e-07)]_\ 2 chrV:242004-242408 1.96e-01 100 chrXII:441030-441434 2.21e-01 100 chrXIII:222752-223156 9.43e-01 100 chrXV:33274-33678 2.11e-02 100 chrXV:925138-925542 9.93e-01 100 chrXI:283312-283583 9.00e-01 100 chrXI:645377-645781 7.65e-01 100 chrXIII:499875-500279 9.92e-01 100 chrII:405704-406121 2.54e-16 31_[+1(5.07e-10)]_3_[-2(1.45e-10)]_\ 22 chrIV:434185-434441 3.79e-16 9_[+2(2.68e-08)]_3_[-1(2.22e-11)]_\ [-3(1.70e-07)]_23 chrXVI:282413-282817 8.92e-01 100 chrI:166424-166567 3.87e-01 100 chrVII:700496-701191 8.11e-01 100 chrV:397231-397635 7.93e-01 100 chrIV:45553-45957 2.99e-01 100 chrXVI:435769-436125 2.50e-12 4_[+2(1.52e-07)]_25_[-3(5.30e-08)]_\ 29 chrVIII:116015-116349 3.04e-11 7_[-1(2.22e-11)]_[-3(2.40e-07)]_49 chrXI:46675-46934 7.43e-10 13_[-1(3.56e-10)]_64 chrVII:482051-482592 3.16e-01 100 chrII:255176-255347 7.96e-01 100 chrIX:427555-427780 3.44e-01 100 chrXVI:303527-303718 3.29e-01 100 chrIX:128092-128496 3.66e-01 100 chrXV:1028764-1029036 9.77e-01 100 chrV:487247-487518 8.29e-10 7_[+2(5.57e-10)]_2_[-1(5.25e-07)]_\ 47 chrX:355203-355303 5.28e-07 21_[-2(1.45e-10)]_58 chrV:99973-100295 5.40e-06 64_[+1(4.41e-08)]_13 chrIX:129865-130269 6.75e-02 100 chrII:613665-614069 6.56e-01 100 chrXII:935749-936153 7.88e-02 100 chrXIII:888324-888524 8.00e-01 100 chrXII:1003361-1003765 2.36e-01 100 chrIX:210582-210986 9.11e-02 100 chrXV:93718-93947 1.91e-01 100 chrV:250262-250452 4.61e-04 20_[-2(5.82e-08)]_59 chrIV:992681-992992 1.21e-03 49_[+3(1.95e-06)]_30 chrXI:326314-327261 2.28e-01 100 chrVII:316891-317295 9.99e-01 100 chrXV:282017-282313 1.21e-03 52_[+3(1.95e-06)]_27 chrIV:117750-118154 5.12e-01 100 chrXI:364729-365133 5.10e-01 100 chrVI:64152-64556 9.44e-01 100 chrV:85818-86186 8.40e-01 100 chrX:156737-156837 2.86e-01 100 chrXV:797004-797300 5.12e-01 100 chrVII:934881-935285 7.38e-01 100 chrVII:847867-848271 3.55e-01 100 chrXIII:887608-887857 2.45e-01 100 chrIV:1075395-1075687 2.85e-04 13_[-1(1.83e-06)]_[-3(7.15e-05)]_43 chrXVI:679127-679255 1.21e-01 100 chrVII:227430-227834 9.03e-01 100 chrIV:1201601-1201934 1.08e-18 28_[+3(5.07e-07)]_[+1(7.31e-11)]_3_\ [-2(5.98e-12)]_4 chrV:86120-86785 3.86e-01 100 chrXI:308072-308348 7.88e-10 16_[-1(1.03e-07)]_1_[-3(1.96e-09)]_\ 39 chrV:101079-101483 9.55e-01 100 chrIV:580544-580657 4.46e-01 100 chrVIII:34511-35177 3.15e-01 100 chrX:415868-415968 1.92e-04 28_[-3(4.68e-06)]_51 chrXVI:433095-433499 2.18e-02 100 chrXIII:372379-372638 2.42e-08 19_[-1(1.03e-07)]_1_[-3(7.99e-08)]_\ 36 chrXI:617583-617987 1.60e-01 100 chrVII:824420-824824 2.32e-01 100 chrX:541408-541508 9.77e-05 60_[-2(5.82e-08)]_19 chrIV:411323-411563 6.98e-01 100 chrXII:1040538-1040942 3.12e-01 100 chrXI:379536-379823 2.22e-09 46_[+3(1.12e-08)]_1_[+1(1.03e-07)]_\ 9 chrXVI:210094-210416 6.39e-04 18_[-1(5.25e-07)]_59 chrXIV:102573-102924 2.56e-14 13_[+3(3.00e-07)]_1_[+1(3.29e-09)]_\ 3_[-2(8.57e-09)]_18 chrXV:234301-234705 2.79e-01 100 chrVI:226592-226869 5.29e-19 16_[+2(5.98e-12)]_3_[-1(7.31e-11)]_\ [-3(2.40e-07)]_16 chrIV:722344-722748 7.67e-01 100 chrXIII:626569-626973 9.94e-01 100 chrXII:449535-449939 9.22e-01 100 chrXVI:171171-171575 3.68e-01 100 chrXIII:887007-887411 9.90e-02 100 chrVII:977028-977432 9.31e-01 100 chrV:354782-355050 6.21e-01 100 chrXVI:821751-822155 9.64e-01 100 chrXIV:443556-443960 2.35e-01 100 chrIV:130025-130290 9.39e-01 100 chrX:538451-538551 2.34e-12 43_[+1(7.13e-10)]_3_[-2(4.07e-09)]_\ 10 chrX:227818-227918 4.88e-01 100 chrVII:323785-324076 5.52e-01 100 chrXIV:253581-253985 3.13e-02 100 chrX:702642-702742 9.73e-01 100 chrXI:258708-258900 2.04e-01 100 chrIX:257822-258226 7.94e-01 100 chrXV:24609-24866 9.36e-01 100 chrXII:243091-243495 6.64e-01 100 chrIV:555846-556129 1.73e-01 100 chrVII:611752-612156 7.88e-01 100 chrV:138505-139090 5.28e-01 100 chrX:374297-374397 4.09e-13 45_[+2(1.45e-10)]_3_[-1(5.07e-10)]_\ 8 chrV:78416-78573 3.01e-01 100 chrXII:95705-96109 5.60e-01 100 chrVIII:126000-126242 8.94e-01 100 chrIV:768318-768722 3.50e-01 100 chrXVI:731990-732197 2.45e-01 100 chrXV:798096-798500 3.96e-02 100 chrVII:185592-185911 1.08e-18 21_[+2(5.98e-12)]_3_[-1(7.31e-11)]_\ [-3(5.07e-07)]_11 chrVII:534876-535147 8.06e-01 100 chrIV:492098-492502 6.05e-01 100 chrV:166842-167246 9.93e-01 100 chrIX:255518-255630 1.07e-01 54_[-1(9.31e-05)]_23 chrX:212604-212704 9.44e-01 100 chrXIII:540527-540681 4.48e-02 100 chrX:74534-74634 9.97e-01 100 chrIV:580203-580413 6.45e-01 100 chrXV:487321-487725 9.49e-06 9_[-2(8.57e-09)]_70 chrXI:334142-334445 9.99e-01 100 chrII:159852-159957 6.43e-01 100 chrIV:976212-976462 5.53e-01 100 chrXIII:301414-301521 9.91e-01 100 chrXII:109865-110269 4.32e-01 100 chrII:414100-414288 9.14e-01 100 chrIV:117246-117501 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chrXII:797012-797326 3.44e-03 75_[+1(5.25e-07)]_2 chrXII:426974-427285 6.20e-01 100 chrXV:232047-232451 5.29e-01 100 chrXI:517826-518132 1.97e-07 54_[+3(1.18e-07)]_[+1(3.44e-07)]_2 chrIV:76778-77182 6.10e-01 100 chrIV:1305487-1305763 3.86e-08 50_[+3(2.40e-07)]_[+1(5.37e-08)]_6 chrII:478958-479195 9.14e-01 100 chrX:542851-542951 1.41e-02 21_[-1(5.64e-05)]_56 chrXII:1002551-1002955 3.83e-01 100 chrIV:1345326-1345556 3.02e-01 100 chrIV:1264126-1264530 1.75e-03 6_[-1(1.01e-05)]_71 chrXV:619356-619539 2.70e-02 100 chrXV:841722-842126 9.51e-01 100 chrXIV:174171-174575 7.71e-01 100 chrVII:774185-774519 2.29e-08 42_[+3(1.12e-08)]_[+1(3.44e-07)]_14 chrI:25119-25523 3.47e-02 100 chrVIII:75768-75873 2.43e-01 100 chrXIII:290643-290962 1.01e-03 65_[+1(5.25e-07)]_12 chrXIV:493958-494362 5.54e-01 100 chrX:606484-606584 6.02e-01 100 chrXII:791473-791877 9.28e-01 100 chrIX:249066-249356 2.86e-01 100 chrXII:1018215-1018619 7.38e-01 100 chrXVI:901611-901869 8.48e-04 74_[-2(8.88e-05)]_5 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chrXIII:732756-733160 6.72e-01 100 chrXV:110858-111138 4.54e-09 22_[+2(8.04e-10)]_25_[-3(1.03e-05)]_\ 11 chrXI:431997-432401 7.79e-01 100 chrXIII:123242-123646 9.31e-01 100 chrXV:1011525-1011929 2.45e-01 100 chrV:51979-52149 9.67e-01 100 chrVII:148205-148609 3.57e-01 100 chrII:226942-227262 7.50e-09 18_[+3(3.98e-08)]_[+1(5.37e-08)]_38 chrIX:393422-393535 5.90e-02 100 chrVII:405412-405648 7.23e-13 5_[+1(5.07e-10)]_3_[-2(1.45e-10)]_\ 48 chrIII:295521-295925 9.86e-01 100 chrXIV:626098-626502 9.35e-01 100 chrXII:781547-781784 2.44e-01 100 chrXIV:89199-89550 5.73e-01 100 chrX:122219-122319 8.07e-02 100 chrXII:611757-611968 2.74e-02 100 chrXVI:560075-560438 2.26e-06 [+2(1.55e-08)]_45_[-3(9.33e-05)]_13 chrXV:1015389-1015793 5.75e-01 100 chrIV:410263-410516 1.56e-07 35_[+3(9.11e-08)]_[+1(3.44e-07)]_21 chrXV:977863-978267 9.02e-01 100 chrXV:978903-979056 5.48e-01 100 chrIV:385292-385696 8.84e-01 100 chrX:414832-414932 2.43e-18 28_[+3(1.18e-06)]_[+1(7.31e-11)]_3_\ [-2(5.98e-12)]_4 chrIII:295375-295600 1.17e-10 42_[+3(7.49e-07)]_[+1(2.22e-11)]_14 chrXII:713222-713496 9.12e-01 100 chrIV:218285-218689 5.34e-01 100 chrX:384574-384674 9.32e-01 100 chrXII:811921-812325 9.75e-01 100 chrVII:545277-545681 6.33e-01 100 chrXV:1048997-1049401 8.01e-01 100 chrX:204585-204685 9.77e-05 57_[-2(5.82e-08)]_22 chrXIII:550721-551125 7.36e-01 100 chrXIV:63374-63778 2.54e-01 100 chrIII:127564-127884 1.56e-09 37_[+3(6.10e-08)]_1_[+1(3.29e-09)]_\ 18 chrIV:768520-768924 1.01e-01 100 chrXV:904365-904490 9.19e-01 100 chrVIII:105030-105434 2.86e-01 100 chrII:645009-645330 1.08e-03 64_[+1(5.25e-07)]_13 chrI:142679-143030 5.68e-01 100 chrV:396275-396493 6.52e-01 100 chrXVI:214862-215266 7.93e-02 100 chrXVI:645384-645587 2.22e-01 100 chrV:461838-462242 3.39e-01 100 chrVIII:175097-175388 1.83e-01 100 chrVII:311206-312203 7.38e-01 100 chrII:332387-332670 7.25e-01 100 chrVII:823360-823639 1.13e-13 28_[+3(1.84e-08)]_1_[+1(1.03e-07)]_\ 3_[-2(2.14e-08)]_3 chrXII:1029364-1029768 6.21e-01 100 chrII:680883-681122 5.10e-01 100 chrIV:1489569-1489689 8.58e-01 100 chrVII:857303-857634 3.57e-06 56_[-3(3.65e-09)]_23 chrXIII:572734-573115 3.28e-10 17_[+2(5.42e-09)]_3_[-1(6.50e-08)]_\ 36 chrVIII:127011-127415 4.81e-01 100 chrXV:438492-438863 7.70e-07 32_[+1(1.06e-08)]_45 chrVII:648249-648350 9.41e-01 100 chrXIV:726061-726311 1.55e-07 40_[-1(1.33e-06)]_1_[-3(1.18e-06)]_\ 15 chrXIV:716055-716544 8.65e-01 100 chrXIII:872772-872876 8.48e-01 100 chrIV:884227-884562 1.22e-03 12_[+3(6.06e-06)]_67 chrVII:556849-557062 9.67e-01 100 chrXIV:283045-283449 7.16e-01 100 chrIV:1301668-1302072 9.86e-01 100 chrVII:738946-739282 2.60e-09 53_[+3(4.45e-09)]_1_[+1(1.33e-07)]_\ 2 chrII:605331-605444 3.66e-01 100 chrIV:1095285-1095599 6.91e-02 52_[-3(9.06e-05)]_27 chrXIII:297318-298826 9.56e-01 100 chrXIII:480511-480832 2.43e-18 8_[+2(5.98e-12)]_3_[-1(7.31e-11)]_\ [-3(1.18e-06)]_24 chrV:510695-511099 1.18e-01 100 chrXII:1051989-1052215 9.90e-15 27_[+2(2.92e-10)]_3_[-1(1.33e-07)]_\ 1_[-3(7.99e-08)]_4 chrXVI:678887-679043 6.44e-01 100 chrV:131012-131305 1.98e-04 28_[-3(9.87e-07)]_51 chrIX:317703-318107 1.31e-01 100 chrXII:65379-65783 8.27e-01 100 chrXIII:463443-463673 8.43e-01 100 chrX:617763-617863 2.95e-07 42_[+3(1.84e-08)]_1_[+1(9.76e-06)]_\ 13 chrII:88961-89365 9.08e-01 100 chrIV:1017079-1017445 1.26e-09 3_[+2(5.57e-10)]_2_[-1(1.12e-06)]_\ 51 chrIV:217100-217504 1.04e-01 100 chrXII:784232-784538 3.88e-05 14_[+3(2.28e-06)]_65 chrXV:605452-605856 6.42e-01 100 chrIV:1302172-1302576 4.64e-01 100 chrXII:605200-605570 1.07e-01 100 chrXV:883615-884019 3.95e-03 72_[-3(4.68e-06)]_7 chrXIV:577141-577272 9.83e-01 100 chrXV:464363-464629 3.62e-07 7_[+3(4.94e-05)]_47_[-2(2.46e-09)]_\ 4 chrV:423231-423360 3.72e-01 100 chrXII:899418-899519 9.09e-01 100 chrIV:1278658-1279062 5.24e-01 100 chrXV:883375-883779 5.61e-01 100 chrXV:622833-623237 7.18e-01 100 chrXIII:861182-861390 4.72e-01 100 chrXV:228165-228489 8.06e-09 49_[+3(4.13e-07)]_1_[+1(3.29e-09)]_\ 6 chrIV:468245-468649 8.70e-01 100 chrXII:348195-348599 8.73e-01 100 chrXII:812126-812530 7.50e-01 100 chrXIII:222550-222954 8.53e-01 100 chrIV:579829-580226 9.39e-01 100 chrVIII:475607-475906 4.58e-11 8_[+2(1.25e-10)]_3_[-1(1.83e-06)]_\ 45 chrV:288340-288668 2.69e-10 30_[-1(2.14e-09)]_[-3(2.53e-08)]_26 chrXII:201932-202086 8.81e-01 100 chrXII:254280-254684 2.51e-01 100 chrXIII:552826-553073 7.91e-01 100 chrXIV:771926-772350 1.26e-01 18_[-2(8.88e-05)]_61 chrIX:69290-69694 1.69e-01 100 chrX:156447-156547 9.20e-03 74_[+1(2.57e-05)]_3 chrVII:401335-401739 2.29e-09 48_[+2(5.57e-10)]_2_[-1(5.25e-07)]_\ 6 chrIV:1402977-1403140 9.11e-01 100 chrXII:796483-796784 2.13e-01 100 chrXII:547057-547461 3.94e-01 100 chrXII:721787-722191 9.85e-01 100 chrXV:779773-780038 7.81e-01 100 chrIV:437630-437930 4.63e-08 37_[+3(1.91e-07)]_[+1(5.37e-08)]_19 chrXII:962893-963187 3.75e-07 24_[-1(1.33e-06)]_1_[-3(2.65e-06)]_\ 31 chrIX:388237-388533 9.81e-01 100 chrIII:227783-228151 2.59e-10 20_[+3(6.10e-10)]_[+1(3.98e-07)]_36 chrIII:107393-107604 9.85e-01 100 chrIV:1360563-1360967 5.89e-01 100 chrXIV:415829-415941 7.18e-01 100 chrIV:519638-519885 4.89e-07 27_[+3(3.55e-06)]_1_[+1(1.33e-06)]_\ 28 chrXII:712246-712650 4.55e-01 100 chrIV:601629-602033 9.89e-01 100 chrXIII:762100-762202 1.25e-01 100 chrXII:366088-366404 1.32e-01 100 chrI:190132-190536 7.35e-01 100 chrVIII:146070-146308 7.18e-01 100 chrXV:832497-832651 9.95e-01 100 chrXV:866651-866883 5.20e-01 100 chrXII:820082-820183 8.99e-01 100 chrVI:223100-223504 6.97e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************