Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.024655
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.063981
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.087622
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.022467
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.094345
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background
Finished invoke:
  name: bg  status: 0  time: 0.027637
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 923.980366
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 92.151423
Invoking:
  centrimo -seqlen 376 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.251377
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.506379
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -primary TKGGTARVGCGYCHGACTNNWAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.376911
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -primary RRAGRTCMBSGGTTCGAYYCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.324881
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -primary KVAHRTGATARCCRYTACACTATM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.265755
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -primary CTBGGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.23391
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -primary SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.364752
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -primary CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.217116
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -primary CGGTABC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.183077
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -primary CCCATDC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.208058
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -primary CGRTGAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.185876
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -primary TCYGTACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.174382
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -primary ACTARACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.201267
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.21963
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -primary GCTTCY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.243512
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -primary ACGCSACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.177481
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -primary GCYAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.221439
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -primary AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 0.19529
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -primary CTGAGCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo17  status: 0  time: 0.195496
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background --motif TKGGTARVGCGYCHGACTNNWAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.19384
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background --motif RRAGRTCMBSGGTTCGAYYCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.203225
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background --motif KVAHRTGATARCCRYTACACTATM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.230171
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background --motif CTBGGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.148642
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background --motif SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.115849
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background --motif CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.117318
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background --motif CGGTABC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.131842
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background --motif CCCATDC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.128427
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background --motif CGRTGAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.137235
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background --motif TCYGTACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.127441
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background --motif ACTARACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.126309
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.117226
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background --motif GCTTCY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.121614
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background --motif ACGCSACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.132058
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background --motif GCYAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.10822
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background --motif AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa
Finished invoke:
  name: fimo16  status: 0  time: 0.133588
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background --motif CTGAGCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/YJM789--IES2.fa
Finished invoke:
  name: fimo17  status: 0  time: 0.134038
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.2332
Done