******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXIII:362924-363226 1.0000 100 chrX:139546-139646 1.0000 100 chrXII:1029819-1030195 1.0000 100 chrXI:140914-141231 1.0000 100 chrXII:232411-234160 1.0000 100 chrII:332361-332690 1.0000 100 chrV:441825-442575 1.0000 100 chrIV:568739-569126 1.0000 100 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1.0000 100 chrXIII:500167-500573 1.0000 100 chrIV:332070-332446 1.0000 100 chrXV:1028124-1028341 1.0000 100 chrIII:177237-177613 1.0000 100 chrXVI:435743-436135 1.0000 100 chrVII:284086-284462 1.0000 100 chrXII:819958-820334 1.0000 100 chrXII:806493-806715 1.0000 100 chrXVI:406248-406501 1.0000 100 chrXIV:283161-283537 1.0000 100 chrV:135280-135616 1.0000 100 chrII:255139-255515 1.0000 100 chrIV:358174-358336 1.0000 100 chrXII:875233-875557 1.0000 100 chrXV:620534-620710 1.0000 100 chrIV:579113-579338 1.0000 100 chrXII:459529-460081 1.0000 100 chrVII:254192-254506 1.0000 100 chrII:680325-680701 1.0000 100 chrIV:323247-323623 1.0000 100 chrVI:95524-95793 1.0000 100 chrXVI:303491-303805 1.0000 100 chrXI:334551-334798 1.0000 100 chrXV:648556-648932 1.0000 100 chrI:138999-139308 1.0000 100 chrV:117722-118222 1.0000 100 chrIV:309117-309493 1.0000 100 chrV:306987-307363 1.0000 100 chrV:101064-101440 1.0000 100 chrIX:210648-210840 1.0000 100 chrX:652148-652248 1.0000 100 chrIV:1236983-1237359 1.0000 100 chrXIV:632466-632771 1.0000 100 chrIV:1095265-1095610 1.0000 100 chrV:435666-435949 1.0000 100 chrXV:1028745-1029062 1.0000 100 chrVIII:505866-506145 1.0000 100 chrXII:639053-639281 1.0000 100 chrVI:223350-223726 1.0000 100 chrXV:445100-445844 1.0000 100 chrXVI:281294-281484 1.0000 100 chrIV:992681-992997 1.0000 100 chrX:73592-73692 1.0000 100 chrVII:534849-535191 1.0000 100 chrVII:328440-328835 1.0000 100 chrXVI:377102-377478 1.0000 100 chrIV:1401280-1401566 1.0000 100 chrVII:779452-779761 1.0000 100 chrIV:1352382-1352665 1.0000 100 chrXIV:331396-331772 1.0000 100 chrVIII:115992-116354 1.0000 100 chrIV:222006-222279 1.0000 100 chrVII:845469-845826 1.0000 100 chrV:140519-140840 1.0000 100 chrXVI:860210-860553 1.0000 100 chrXI:517815-518128 1.0000 100 chrX:390939-391039 1.0000 100 chrXVI:210105-210423 1.0000 100 chrIV:1441481-1441857 1.0000 100 chrVIII:382971-383287 1.0000 100 chrXII:731978-732282 1.0000 100 chrXV:79817-80086 1.0000 100 chrVI:162075-162368 1.0000 100 chrVII:561503-561655 1.0000 100 chrXIII:504723-505084 1.0000 100 chrXIII:572741-573124 1.0000 100 chrXIII:195983-196329 1.0000 100 chrXI:113710-114086 1.0000 100 chrVII:278307-278430 1.0000 100 chrIX:300145-300463 1.0000 100 chrV:61236-61330 1.0000 94 chrV:152080-152456 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 587 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 58684 N= 587 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.303 C 0.197 G 0.197 T 0.303 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--IES2/background): A 0.311 C 0.189 G 0.189 T 0.311 ******************************************************************************** ******************************************************************************** MOTIF TKGGTARVGCGYCHGACTNNWAA MEME-1 width = 23 sites = 97 llr = 1531 E-value = 2.0e-273 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKGGTARVGCGYCHGACTNNWAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 11::1a53::1124:7::33389 pos.-specific C :1:11::3:a:452218:321:: probability G 24961:55a:9:1272::2312: matrix T 75137:::::1523112a326:1 bits 2.4 ** 2.2 ** 1.9 * ** 1.7 * * *** ** Relative 1.4 * * *** ** Entropy 1.2 * * *** * ** ** (22.8 bits) 1.0 ** ** *** * ** ** 0.7 * ** ****** * ** ** 0.5 ************* **** ** 0.2 ************* **** *** 0.0 ----------------------- Multilevel TTGGTAAGGCGTCAGACTAATAA consensus G T GA C TC CGA sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGTARVGCGYCHGACTNNWAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------- chrVIII:115992-116354 - 19 1.69e-11 TATGGCCAAG TTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrIII:295364-295618 + 58 1.69e-11 TATGGCCAAG TTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrXIV:104659-105046 + 18 1.69e-11 TATGGCCAAG TTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrII:266217-266604 + 33 1.69e-11 TATGGCCAAG TTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrIX:174944-175159 + 45 1.69e-11 TATGGCCAAG TTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrXIV:560594-560832 - 65 1.69e-11 TATGGCCAAG TTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrXV:113665-113947 + 61 1.69e-11 TATGGCCAAG TTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrXV:353931-354264 - 29 1.69e-11 TATGGCCAAG TTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrIX:248698-249035 + 49 6.05e-10 TATGGCCGAG TGGTTAAGGCGACAGACTTGAAA TCTGTTGGGC chrV:288310-288688 - 38 6.05e-10 TATGGCCGAG TGGTTAAGGCGACAGACTTGAAA TCTGTTGGGC chrIX:300145-300463 - 9 1.49e-09 GTTGGCGCAA TCGGTAGCGCGTATGACTCTTAA TCATAAGG chrIV:1352382-1352665 - 28 1.49e-09 GTTGGCGCAA TCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrV:435666-435949 - 30 1.49e-09 GTTGGCGCAA TCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrV:135280-135616 - 62 1.49e-09 GTTGGCGCAA TCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrX:414805-414905 + 58 1.49e-09 GTTGGCGCAA TCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrVII:876248-876556 + 57 1.49e-09 GTTGGCGCAA TCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrIV:1201589-1201940 + 51 1.49e-09 GTTGGCGCAA TCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrIV:1095265-1095610 - 37 1.72e-09 CTTAGCTCAG TTGGGAGAGCGCCAGACTGAAGA AAAAACTTTG chrVI:157863-158173 - 2 1.72e-09 TTTAGCTCAG TTGGGAGAGCGCCAGACTGAAGA A chrVIII:237730-238096 - 39 1.72e-09 TTTAGCTCAG TTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrXIII:352121-352438 + 66 1.72e-09 TTTAGCTCAG TTGGGAGAGCGCCAGACTGAAGA AATACTTCGG chrXIV:374733-375026 + 55 1.72e-09 CTTAGCTCAG TTGGGAGAGCGCCAGACTGAAGA AAAACTTCGG chrVIII:358363-358739 - 31 1.72e-09 TTTAGCTCAG TTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrII:36244-36555 + 64 1.72e-09 TTTAGCTCAG TTGGGAGAGCGCCAGACTGAAGA AAAACTTCGG chrXVI:560080-560445 - 40 1.72e-09 TTTAGCTCAG TTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrVII:440616-440977 - 24 1.72e-09 TTTAGCTCAG TTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrXIV:632466-632771 + 47 1.98e-09 ATGGCCAAGT TGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrVII:730969-731323 + 57 1.98e-09 ATGGCCAAGT TGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrXIV:102571-102925 + 34 1.98e-09 ATGGCCAAGT TGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrIII:127562-127879 + 62 1.98e-09 ATGGCCAAGT TGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrXVI:810550-810829 + 53 1.98e-09 ATGGCCAAGT TGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrVI:137335-137706 - 51 1.98e-09 ATGGCCAAGT TGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrXI:74476-74801 + 52 1.98e-09 ATGGCCAAGT TGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrXII:875233-875557 + 46 2.61e-09 GTTAGCTCAG TTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrVII:115331-115701 + 37 2.61e-09 GTTAGCTCAG TTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrIV:359408-359781 + 48 2.61e-09 GTTAGCTCAG TTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrXVI:769101-769477 - 26 2.61e-09 GTTAGCTCAG TTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrXI:578820-579218 + 11 2.61e-09 GTTAGCTCAG TTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrXIII:131731-132051 - 19 3.89e-09 GCGTGGCGTA ATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrVII:736164-736540 + 52 3.89e-09 GCGTGGCGTA ATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrVII:828528-828965 - 62 3.89e-09 GCGTGGCGTA ATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrXIII:747796-748116 - 21 3.89e-09 GCGTGGCGTA ATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrXI:162345-162708 - 46 3.89e-09 GCGTGGCGTA ATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrII:405710-406113 + 31 3.89e-09 GCGTGGCGTA ATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrV:138501-138944 + 8 3.89e-09 TGGCGTA ATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrIV:568739-569126 + 14 3.89e-09 GCGTGGCGTA ATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrVIII:466900-467131 + 39 5.71e-09 CCTTAGCTTA GTGGTAGAGCGTTGCACTTGTAA TGCAAAGGTC chrXVI:744130-744487 + 40 5.71e-09 CCTTAGCTTA GTGGTAGAGCGTTGCACTTGTAA TGCAAAGGTC chrVII:661581-661913 + 66 5.71e-09 CCTTAGCTTA GTGGTAGAGCGTTGCACTTGTAA TGCAAAGGTC chrXI:46677-46960 - 2 8.26e-09 TTTTGGCCAA GTGGTAAGGCATCGCACTCGTAA T chrX:538433-538533 + 46 1.32e-08 CGTTGGCGTA ATGGTAACGCGTCTCCCTCCTAA GGAGAAGACT chrX:517741-517841 - 20 1.85e-08 CCGTGGCGCA GTGGAAGCGCGCAGGGCTCATAA CCCTGATGTC chrXV:710045-710340 + 73 1.85e-08 CCGTGGCGCA GTGGAAGCGCGCAGGGCTCATAA CCCTG chrV:99973-100312 + 55 1.85e-08 CCGTGGCGCA GTGGAAGCGCGCAGGGCTCATAA CCCTGATGTC chrIII:227769-228165 + 40 3.17e-08 TATGGCCGAG TGGTTAAGGCGAGAGACTCGAAT GGAATAAAAA chrV:311891-312244 - 41 3.52e-08 CATGGCGCAG TTGGTAGCGCGCTTCCCTTGCAA GGAAGAGGTC chrXII:214786-215086 - 32 3.52e-08 CATGGCGCAG TTGGTAGCGCGCTTCCCTTGCAA GGAAGAGGTC chrI:166140-166469 + 28 3.52e-08 CATGGCGCAG TTGGTAGCGCGCTTCCCTTGCAA GGAAGAGGTC chrXII:167865-168187 - 12 3.89e-08 CTTGGCCGAG TGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrXIII:259062-259398 - 22 3.89e-08 CTTGGCCGAG TGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrII:226947-227269 + 32 3.89e-08 CTTGGCCGAG TGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrX:523921-524021 - 12 3.89e-08 CTTGGCCGAG TGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrIV:437607-437932 + 68 3.89e-08 CTTGGCCGAG TGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrIV:1305479-1305775 + 68 3.89e-08 CTTGGCCGAG TGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrV:86427-86794 + 59 3.89e-08 CTTGGCCGAG TGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrXIII:572741-573124 - 36 8.49e-08 AGTAGCTCAG TAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrX:390939-391039 - 15 8.49e-08 AGTAGCTCAG TAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrIV:1175669-1176035 + 42 8.49e-08 AGTAGCTCAG TAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrXV:976350-976589 + 17 8.49e-08 AGTAGCTCAG TAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrX:422775-422875 + 39 8.49e-08 AGTAGCTCAG TAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrIX:183322-183671 - 29 1.46e-07 TTGGCCCAGT TGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXII:734655-734985 + 48 1.46e-07 TTGGCCCAGT TGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrX:233773-233873 + 77 1.46e-07 CGTGGCCCAA TGGTCACGGCGTCTGGCTACGAA C chrXII:374195-374538 + 54 1.46e-07 CGTGGCCCAA TGGTCACGGCGTCTGGCTACGAA CCAGAAGATT chrII:197337-197629 + 77 1.46e-07 TTGGCCCAGT TGGTTAAGGCACCGTGCTAATAA C chrV:443140-443380 - 27 1.46e-07 TTGGCCCAGT TGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrIV:619848-620177 - 42 1.46e-07 CGTGGCCCAA TGGTCACGGCGTCTGGCTACGAA CCAGAAGATT chrXVI:819360-819696 + 67 1.46e-07 TTGGCCCAGT TGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrVII:738974-739285 + 59 1.46e-07 TTGGCCCAGT TGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXVI:435743-436135 - 39 3.58e-07 GTATGGCGCA GTGGTAGCGCAGCAGATTGCAAA TCTGTTGGTC chrXIII:504723-505084 + 58 5.22e-07 TTGGCCGAGC GGTCTAAGGCGCCTGATTCAAGA AATATCTTGA chrXVI:56075-56380 - 61 5.22e-07 CGGTGGCTCA ATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrVII:205363-205722 + 45 5.22e-07 TTGGCCGAGC GGTCTAAGGCGCCTGATTCAAGA AATATCTTGA chrXV:274501-274883 + 46 5.22e-07 AGTGGCCGAG TGGTTAAGGCGATGCCCTGCTAT TTCCTCAGAA chrVII:857276-857633 - 49 5.22e-07 TTGGCCGAGC GGTCTAAGGCGCCTGATTCAAGA AATATCTTGA chrX:415853-415953 - 20 5.22e-07 CGGTGGCTCA ATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrVII:422910-423291 + 58 5.22e-07 TTGGCCGAGC GGTCTAAGGCGCCTGATTCAAGA AATATCTTGA chrVII:287237-287626 - 38 5.22e-07 CGGTGGCTCA ATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrXI:302747-303159 + 29 5.22e-07 CGGTGGCTCA ATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrXIV:726069-726308 - 41 7.44e-07 TTGGCCGAGT GGTCTAAGGCGGCAGACTTAAGA TCTGTTGGAC chrX:424353-424453 - 7 7.44e-07 TTGGCCGAGT GGTCTAAGGCGGCAGACTTAAGA TCTGTT chrXII:656839-657150 - 25 1.34e-06 TGTGGCGTAG TCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrX:197209-197309 - 30 1.34e-06 TGTGGCGTAG TCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrXI:219730-220052 + 69 1.34e-06 TGTGGCGTAG TCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGT chrXII:731978-732282 + 26 2.29e-06 TTGGCCGAGT GGTTTAAGGCGTCAGATTTAGGT GGATTTAACC chrX:617749-617849 + 68 2.29e-06 TTGGCCGAGT GGTTTAAGGCGTCAGATTTAGGT GGATTTAACC chrIV:884218-884581 + 27 3.71e-06 TGTAGCTCAG TGGTTAGAGCTTCGTGCTTATAG CAACATTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGTARVGCGYCHGACTNNWAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVIII:115992-116354 1.7e-11 18_[-1]_59 chrIII:295364-295618 1.7e-11 57_[+1]_20 chrXIV:104659-105046 1.7e-11 17_[+1]_60 chrII:266217-266604 1.7e-11 32_[+1]_45 chrIX:174944-175159 1.7e-11 44_[+1]_33 chrXIV:560594-560832 1.7e-11 64_[-1]_13 chrXV:113665-113947 1.7e-11 60_[+1]_17 chrXV:353931-354264 1.7e-11 28_[-1]_49 chrIX:248698-249035 6.1e-10 48_[+1]_29 chrV:288310-288688 6.1e-10 37_[-1]_40 chrIX:300145-300463 1.5e-09 8_[-1]_69 chrIV:1352382-1352665 1.5e-09 27_[-1]_50 chrV:435666-435949 1.5e-09 29_[-1]_48 chrV:135280-135616 1.5e-09 61_[-1]_16 chrX:414805-414905 1.5e-09 57_[+1]_20 chrVII:876248-876556 1.5e-09 56_[+1]_21 chrIV:1201589-1201940 1.5e-09 50_[+1]_27 chrIV:1095265-1095610 1.7e-09 36_[-1]_41 chrVI:157863-158173 1.7e-09 1_[-1]_76 chrVIII:237730-238096 1.7e-09 38_[-1]_39 chrXIII:352121-352438 1.7e-09 65_[+1]_12 chrXIV:374733-375026 1.7e-09 54_[+1]_23 chrVIII:358363-358739 1.7e-09 30_[-1]_47 chrII:36244-36555 1.7e-09 63_[+1]_14 chrXVI:560080-560445 1.7e-09 39_[-1]_38 chrVII:440616-440977 1.7e-09 23_[-1]_54 chrXIV:632466-632771 2e-09 46_[+1]_31 chrVII:730969-731323 2e-09 56_[+1]_21 chrXIV:102571-102925 2e-09 33_[+1]_44 chrIII:127562-127879 2e-09 61_[+1]_16 chrXVI:810550-810829 2e-09 52_[+1]_25 chrVI:137335-137706 2e-09 50_[-1]_27 chrXI:74476-74801 2e-09 51_[+1]_26 chrXII:875233-875557 2.6e-09 45_[+1]_32 chrVII:115331-115701 2.6e-09 36_[+1]_41 chrIV:359408-359781 2.6e-09 47_[+1]_30 chrXVI:769101-769477 2.6e-09 25_[-1]_52 chrXI:578820-579218 2.6e-09 10_[+1]_67 chrXIII:131731-132051 3.9e-09 18_[-1]_59 chrVII:736164-736540 3.9e-09 51_[+1]_26 chrVII:828528-828965 3.9e-09 61_[-1]_16 chrXIII:747796-748116 3.9e-09 20_[-1]_57 chrXI:162345-162708 3.9e-09 45_[-1]_32 chrII:405710-406113 3.9e-09 30_[+1]_47 chrV:138501-138944 3.9e-09 7_[+1]_70 chrIV:568739-569126 3.9e-09 13_[+1]_64 chrVIII:466900-467131 5.7e-09 38_[+1]_39 chrXVI:744130-744487 5.7e-09 39_[+1]_38 chrVII:661581-661913 5.7e-09 65_[+1]_12 chrXI:46677-46960 8.3e-09 1_[-1]_76 chrX:538433-538533 1.3e-08 45_[+1]_32 chrX:517741-517841 1.9e-08 19_[-1]_58 chrXV:710045-710340 1.9e-08 72_[+1]_5 chrV:99973-100312 1.9e-08 54_[+1]_23 chrIII:227769-228165 3.2e-08 39_[+1]_38 chrV:311891-312244 3.5e-08 40_[-1]_37 chrXII:214786-215086 3.5e-08 31_[-1]_46 chrI:166140-166469 3.5e-08 27_[+1]_50 chrXII:167865-168187 3.9e-08 11_[-1]_66 chrXIII:259062-259398 3.9e-08 21_[-1]_56 chrII:226947-227269 3.9e-08 31_[+1]_46 chrX:523921-524021 3.9e-08 11_[-1]_66 chrIV:437607-437932 3.9e-08 67_[+1]_10 chrIV:1305479-1305775 3.9e-08 67_[+1]_10 chrV:86427-86794 3.9e-08 58_[+1]_19 chrXIII:572741-573124 8.5e-08 35_[-1]_42 chrX:390939-391039 8.5e-08 14_[-1]_63 chrIV:1175669-1176035 8.5e-08 41_[+1]_36 chrXV:976350-976589 8.5e-08 16_[+1]_61 chrX:422775-422875 8.5e-08 38_[+1]_39 chrIX:183322-183671 1.5e-07 28_[-1]_49 chrXII:734655-734985 1.5e-07 47_[+1]_30 chrX:233773-233873 1.5e-07 76_[+1]_1 chrXII:374195-374538 1.5e-07 53_[+1]_24 chrII:197337-197629 1.5e-07 76_[+1]_1 chrV:443140-443380 1.5e-07 26_[-1]_51 chrIV:619848-620177 1.5e-07 41_[-1]_36 chrXVI:819360-819696 1.5e-07 66_[+1]_11 chrVII:738974-739285 1.5e-07 58_[+1]_19 chrXVI:435743-436135 3.6e-07 38_[-1]_39 chrXIII:504723-505084 5.2e-07 57_[+1]_20 chrXVI:56075-56380 5.2e-07 60_[-1]_17 chrVII:205363-205722 5.2e-07 44_[+1]_33 chrXV:274501-274883 5.2e-07 45_[+1]_32 chrVII:857276-857633 5.2e-07 48_[-1]_29 chrX:415853-415953 5.2e-07 19_[-1]_58 chrVII:422910-423291 5.2e-07 57_[+1]_20 chrVII:287237-287626 5.2e-07 37_[-1]_40 chrXI:302747-303159 5.2e-07 28_[+1]_49 chrXIV:726069-726308 7.4e-07 40_[-1]_37 chrX:424353-424453 7.4e-07 6_[-1]_71 chrXII:656839-657150 1.3e-06 24_[-1]_53 chrX:197209-197309 1.3e-06 29_[-1]_48 chrXI:219730-220052 1.3e-06 68_[+1]_9 chrXII:731978-732282 2.3e-06 25_[+1]_52 chrX:617749-617849 2.3e-06 67_[+1]_10 chrIV:884218-884581 3.7e-06 26_[+1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGTARVGCGYCHGACTNNWAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKGGTARVGCGYCHGACTNNWAA width=23 seqs=97 chrVIII:115992-116354 ( 19) TTGGTAAGGCGCCACACTAGTAA 1 chrIII:295364-295618 ( 58) TTGGTAAGGCGCCACACTAGTAA 1 chrXIV:104659-105046 ( 18) TTGGTAAGGCGCCACACTAGTAA 1 chrII:266217-266604 ( 33) TTGGTAAGGCGCCACACTAGTAA 1 chrIX:174944-175159 ( 45) TTGGTAAGGCGCCACACTAGTAA 1 chrXIV:560594-560832 ( 65) TTGGTAAGGCGCCACACTAGTAA 1 chrXV:113665-113947 ( 61) TTGGTAAGGCGCCACACTAGTAA 1 chrXV:353931-354264 ( 29) TTGGTAAGGCGCCACACTAGTAA 1 chrIX:248698-249035 ( 49) TGGTTAAGGCGACAGACTTGAAA 1 chrV:288310-288688 ( 38) TGGTTAAGGCGACAGACTTGAAA 1 chrIX:300145-300463 ( 9) TCGGTAGCGCGTATGACTCTTAA 1 chrIV:1352382-1352665 ( 28) TCGGTAGCGCGTATGACTCTTAA 1 chrV:435666-435949 ( 30) TCGGTAGCGCGTATGACTCTTAA 1 chrV:135280-135616 ( 62) TCGGTAGCGCGTATGACTCTTAA 1 chrX:414805-414905 ( 58) TCGGTAGCGCGTATGACTCTTAA 1 chrVII:876248-876556 ( 57) TCGGTAGCGCGTATGACTCTTAA 1 chrIV:1201589-1201940 ( 51) TCGGTAGCGCGTATGACTCTTAA 1 chrIV:1095265-1095610 ( 37) TTGGGAGAGCGCCAGACTGAAGA 1 chrVI:157863-158173 ( 2) TTGGGAGAGCGCCAGACTGAAGA 1 chrVIII:237730-238096 ( 39) TTGGGAGAGCGCCAGACTGAAGA 1 chrXIII:352121-352438 ( 66) TTGGGAGAGCGCCAGACTGAAGA 1 chrXIV:374733-375026 ( 55) TTGGGAGAGCGCCAGACTGAAGA 1 chrVIII:358363-358739 ( 31) TTGGGAGAGCGCCAGACTGAAGA 1 chrII:36244-36555 ( 64) TTGGGAGAGCGCCAGACTGAAGA 1 chrXVI:560080-560445 ( 40) TTGGGAGAGCGCCAGACTGAAGA 1 chrVII:440616-440977 ( 24) TTGGGAGAGCGCCAGACTGAAGA 1 chrXIV:632466-632771 ( 47) TGGTTAAGGCGTGCGACTGTTAA 1 chrVII:730969-731323 ( 57) TGGTTAAGGCGTGCGACTGTTAA 1 chrXIV:102571-102925 ( 34) TGGTTAAGGCGTGCGACTGTTAA 1 chrIII:127562-127879 ( 62) TGGTTAAGGCGTGCGACTGTTAA 1 chrXVI:810550-810829 ( 53) TGGTTAAGGCGTGCGACTGTTAA 1 chrVI:137335-137706 ( 51) TGGTTAAGGCGTGCGACTGTTAA 1 chrXI:74476-74801 ( 52) TGGTTAAGGCGTGCGACTGTTAA 1 chrXII:875233-875557 ( 46) TTGGTAGAGCGTTCGGCTTTTAA 1 chrVII:115331-115701 ( 37) TTGGTAGAGCGTTCGGCTTTTAA 1 chrIV:359408-359781 ( 48) TTGGTAGAGCGTTCGGCTTTTAA 1 chrXVI:769101-769477 ( 26) TTGGTAGAGCGTTCGGCTTTTAA 1 chrXI:578820-579218 ( 11) TTGGTAGAGCGTTCGGCTTTTAA 1 chrXIII:131731-132051 ( 19) ATGGCAACGCGTCTGACTTCTAA 1 chrVII:736164-736540 ( 52) ATGGCAACGCGTCTGACTTCTAA 1 chrVII:828528-828965 ( 62) ATGGCAACGCGTCTGACTTCTAA 1 chrXIII:747796-748116 ( 21) ATGGCAACGCGTCTGACTTCTAA 1 chrXI:162345-162708 ( 46) ATGGCAACGCGTCTGACTTCTAA 1 chrII:405710-406113 ( 31) ATGGCAACGCGTCTGACTTCTAA 1 chrV:138501-138944 ( 8) ATGGCAACGCGTCTGACTTCTAA 1 chrIV:568739-569126 ( 14) ATGGCAACGCGTCTGACTTCTAA 1 chrVIII:466900-467131 ( 39) GTGGTAGAGCGTTGCACTTGTAA 1 chrXVI:744130-744487 ( 40) GTGGTAGAGCGTTGCACTTGTAA 1 chrVII:661581-661913 ( 66) GTGGTAGAGCGTTGCACTTGTAA 1 chrXI:46677-46960 ( 2) GTGGTAAGGCATCGCACTCGTAA 1 chrX:538433-538533 ( 46) ATGGTAACGCGTCTCCCTCCTAA 1 chrX:517741-517841 ( 20) GTGGAAGCGCGCAGGGCTCATAA 1 chrXV:710045-710340 ( 73) GTGGAAGCGCGCAGGGCTCATAA 1 chrV:99973-100312 ( 55) GTGGAAGCGCGCAGGGCTCATAA 1 chrIII:227769-228165 ( 40) TGGTTAAGGCGAGAGACTCGAAT 1 chrV:311891-312244 ( 41) TTGGTAGCGCGCTTCCCTTGCAA 1 chrXII:214786-215086 ( 32) TTGGTAGCGCGCTTCCCTTGCAA 1 chrI:166140-166469 ( 28) TTGGTAGCGCGCTTCCCTTGCAA 1 chrXII:167865-168187 ( 12) TGGTTAAGGCGAAAGATTAGAAA 1 chrXIII:259062-259398 ( 22) TGGTTAAGGCGAAAGATTAGAAA 1 chrII:226947-227269 ( 32) TGGTTAAGGCGAAAGATTAGAAA 1 chrX:523921-524021 ( 12) TGGTTAAGGCGAAAGATTAGAAA 1 chrIV:437607-437932 ( 68) TGGTTAAGGCGAAAGATTAGAAA 1 chrIV:1305479-1305775 ( 68) TGGTTAAGGCGAAAGATTAGAAA 1 chrV:86427-86794 ( 59) TGGTTAAGGCGAAAGATTAGAAA 1 chrXIII:572741-573124 ( 36) TAGGAAGAGCGTCAGTCTCATAA 1 chrX:390939-391039 ( 15) TAGGAAGAGCGTCAGTCTCATAA 1 chrIV:1175669-1176035 ( 42) TAGGAAGAGCGTCAGTCTCATAA 1 chrXV:976350-976589 ( 17) TAGGAAGAGCGTCAGTCTCATAA 1 chrX:422775-422875 ( 39) TAGGAAGAGCGTCAGTCTCATAA 1 chrIX:183322-183671 ( 29) TGGTTAAGGCACCGTGCTAATAA 1 chrXII:734655-734985 ( 48) TGGTTAAGGCACCGTGCTAATAA 1 chrX:233773-233873 ( 77) TGGTCACGGCGTCTGGCTACGAA 1 chrXII:374195-374538 ( 54) TGGTCACGGCGTCTGGCTACGAA 1 chrII:197337-197629 ( 77) TGGTTAAGGCACCGTGCTAATAA 1 chrV:443140-443380 ( 27) TGGTTAAGGCACCGTGCTAATAA 1 chrIV:619848-620177 ( 42) TGGTCACGGCGTCTGGCTACGAA 1 chrXVI:819360-819696 ( 67) TGGTTAAGGCACCGTGCTAATAA 1 chrVII:738974-739285 ( 59) TGGTTAAGGCACCGTGCTAATAA 1 chrXVI:435743-436135 ( 39) GTGGTAGCGCAGCAGATTGCAAA 1 chrXIII:504723-505084 ( 58) GGTCTAAGGCGCCTGATTCAAGA 1 chrXVI:56075-56380 ( 61) ATGGTAGAGCTTTCGACTCCAAT 1 chrVII:205363-205722 ( 45) GGTCTAAGGCGCCTGATTCAAGA 1 chrXV:274501-274883 ( 46) TGGTTAAGGCGATGCCCTGCTAT 1 chrVII:857276-857633 ( 49) GGTCTAAGGCGCCTGATTCAAGA 1 chrX:415853-415953 ( 20) ATGGTAGAGCTTTCGACTCCAAT 1 chrVII:422910-423291 ( 58) GGTCTAAGGCGCCTGATTCAAGA 1 chrVII:287237-287626 ( 38) ATGGTAGAGCTTTCGACTCCAAT 1 chrXI:302747-303159 ( 29) ATGGTAGAGCTTTCGACTCCAAT 1 chrXIV:726069-726308 ( 41) GGTCTAAGGCGGCAGACTTAAGA 1 chrX:424353-424453 ( 7) GGTCTAAGGCGGCAGACTTAAGA 1 chrXII:656839-657150 ( 25) TCGGTAGCGCGCTCCCTTAGCAT 1 chrX:197209-197309 ( 30) TCGGTAGCGCGCTCCCTTAGCAT 1 chrXI:219730-220052 ( 69) TCGGTAGCGCGCTCCCTTAGCAT 1 chrXII:731978-732282 ( 26) GGTTTAAGGCGTCAGATTTAGGT 1 chrX:617749-617849 ( 68) GGTTTAAGGCGTCAGATTTAGGT 1 chrIV:884218-884581 ( 27) TGGTTAGAGCTTCGTGCTTATAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGTARVGCGYCHGACTNNWAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 23 n= 45770 bayes= 9.33829 E= 2.0e-273 -121 -1324 -20 117 -259 -88 97 61 -1324 -1324 228 -191 -1324 -161 173 -1 -191 -74 -103 119 169 -1324 -1324 -1324 73 -261 126 -1324 -16 50 126 -1324 -1324 -1324 240 -1324 -1324 240 -1324 -1324 -191 -1324 219 -259 -145 97 -261 64 -83 153 -120 -67 30 5 -29 -21 -1324 12 193 -211 113 -120 -3 -259 -1324 212 -1324 -83 -1324 -1324 -1324 169 -16 50 -3 -21 9 -3 61 -67 -1 -161 -188 89 141 -1324 -11 -1324 150 -1324 -420 -145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGTARVGCGYCHGACTNNWAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 23 nsites= 97 E= 2.0e-273 0.134021 0.000000 0.164948 0.701031 0.051546 0.103093 0.371134 0.474227 0.000000 0.000000 0.917526 0.082474 0.000000 0.061856 0.628866 0.309278 0.082474 0.113402 0.092784 0.711340 1.000000 0.000000 0.000000 0.000000 0.515464 0.030928 0.453608 0.000000 0.278351 0.268041 0.453608 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.082474 0.000000 0.865979 0.051546 0.113402 0.371134 0.030928 0.484536 0.175258 0.546392 0.082474 0.195876 0.381443 0.195876 0.154639 0.268041 0.000000 0.206186 0.721649 0.072165 0.680412 0.082474 0.185567 0.051546 0.000000 0.824742 0.000000 0.175258 0.000000 0.000000 0.000000 1.000000 0.278351 0.268041 0.185567 0.268041 0.329897 0.185567 0.288660 0.195876 0.309278 0.061856 0.051546 0.577320 0.824742 0.000000 0.175258 0.000000 0.876289 0.000000 0.010309 0.113402 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGGTARVGCGYCHGACTNNWAA MEME-1 regular expression -------------------------------------------------------------------------------- T[TG]G[GT]TA[AG][GAC]GCG[TC]C[AT][GC]ACT[ACT][AG][TA]AA -------------------------------------------------------------------------------- Time 337.18 secs. ******************************************************************************** ******************************************************************************** MOTIF RRAGRTCMBSGGTTCGAYYCC MEME-2 width = 21 sites = 85 llr = 1433 E-value = 1.6e-270 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRAGRTCMBSGGTTCGAYYCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 247253:3::2::::3a2::: pos.-specific C 1::1:18443::::a::34a7 probability G 54375::2267a:::7:1::: matrix T 21:::72:31::aa:::46:3 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 **** * * Relative 1.4 * ****** * Entropy 1.2 * * ******* ** (24.3 bits) 1.0 ** * ******* *** 0.7 *** * ******** *** 0.5 ******* ******** *** 0.2 ********************* 0.0 --------------------- Multilevel GAAGGTCCCGGGTTCGATTCC consensus AGG AATATCA A CC T sequence T GG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGRTCMBSGGTTCGAYYCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:631759-632038 - 9 6.71e-13 TTAGGGTGCG GGAGGTCCCGGGTTCGAGTCC CGGCTCGC chrIII:123463-123788 - 13 6.71e-13 TTAGGGTGCG GGAGGTCCCGGGTTCGAGTCC CGGCTCGCCC chrIX:210648-210840 + 13 7.31e-11 CTAATAACGC GGGGATCAGCGGTTCGATCCC GCTAGAGACC chrIX:183322-183671 - 5 7.31e-11 CTAATAACGC GGGGATCAGCGGTTCGATCCC GCTA chrXII:734655-734985 + 74 7.31e-11 CTAATAACGC GGGGATCAGCGGTTCGATCCC GCTAGA chrV:443140-443380 - 3 7.31e-11 CTAATAACGC GGGGATCAGCGGTTCGATCCC GC chrV:311891-312244 - 17 1.82e-10 CTTGCAAGGA AGAGGTCATCGGTTCGATTCC GGTTGCGTCC chrXII:214786-215086 - 8 1.82e-10 CTTGCAAGGA AGAGGTCATCGGTTCGATTCC GGTTGCG chrI:166140-166469 + 54 1.82e-10 CTTGCAAGGA AGAGGTCATCGGTTCGATTCC GGTTGCGTCC chrX:374297-374397 - 51 4.16e-10 CTTCTAATCA GAAGATTATGGGTTCGACCCC CATCGTGAGT chrVII:736164-736540 + 78 4.16e-10 CTTCTAATCA GAAGATTATGGGTTCGACCCC CA chrVII:828528-828965 - 38 4.16e-10 CTTCTAATCA GAAGATTATGGGTTCGACCCC CATCGTGAGT chrXI:162345-162708 - 22 4.16e-10 CTTCTAATCA GAAGATTATGGGTTCGACCCC CATCGTGAGT chrII:405710-406113 + 57 4.16e-10 CTTCTAATCA GAAGATTATGGGTTCGACCCC CATCGTGAGT chrX:355200-355300 + 7 4.16e-10 TAATCA GAAGATTATGGGTTCGACCCC CATCGTGAGT chrVII:405416-405658 + 23 4.16e-10 CTTCTAATCA GAAGATTATGGGTTCGACCCC CATCGTGAGT chrV:138501-138944 + 34 4.16e-10 CTTCTAATCA GAAGATTATGGGTTCGACCCC CATCGTGAGT chrIV:568739-569126 + 40 4.16e-10 CTTCTAATCA GAAGATTATGGGTTCGACCCC CATCGTGAGT chrIV:1075353-1075710 - 2 8.81e-10 TTCACACGGC AAAGGTCCCGAGTTCGATCCT C chrVIII:475559-475933 - 21 8.81e-10 TTCACACGGC AAAGGTCCCGAGTTCGATCCT CGGTTGGAAC chrXII:656839-657150 - 1 1.17e-09 TTAGCATGGG AGAGGTCTCCGGTTCGATTCC chrVIII:146115-146332 - 80 1.17e-09 . AGAGGTCTCCGGTTCGATTCC GGACTCGTCC chrX:197209-197309 - 6 1.17e-09 TTAGCATGGG AGAGGTCTCCGGTTCGATTCC GGACT chrXVI:856885-857070 + 16 1.17e-09 TTAGCATGGG AGAGGTCTCCGGTTCGATTCC GGACTCGTCC chrIV:488539-489021 - 78 1.35e-09 GC GAAGATCCCGAGTTCGAACCT CGGTTGGATC chrXIV:96120-96461 - 12 1.35e-09 CCTTCCAAGG TGGGGACACGGGTTCGATTCT CGTACCGCTC chrXV:110873-111133 - 20 1.35e-09 CCTTCCAAGG TGGGGACACGGGTTCGATTCT CGTACCGCTC chrVII:328440-328835 + 36 1.76e-09 GCTTTCACCG TGGAGACCGGGGTTCGACTCC CCGTATCGGA chrV:176935-177377 + 33 1.76e-09 GCTTTCACCG TGGAGACCGGGGTTCGACTCC CCGTATCGGA chrIII:82444-82569 - 17 1.76e-09 GCTTTCACCG TGGAGACCGGGGTTCGACTCC CCGTATCGGA chrVII:401466-401606 - 52 1.76e-09 GCTTTCACCG TGGAGACCGGGGTTCGACTCC CCGTATCGGA chrVII:541688-542100 + 46 1.76e-09 GCTTTCACCG TGGAGACCGGGGTTCGACTCC CCGTATCGGA chrV:487254-487528 - 1 1.76e-09 GCTTTCACCG TGGAGACCGGGGTTCGACTCC chrXI:140914-141231 - 7 1.76e-09 GCTTTCACCG TGGAGACCGGGGTTCGACTCC CCGTAT chrIV:1352382-1352665 - 4 2.29e-09 CTCTTAATCA TAAGGTTAGGGGTTCGAGCCC CCT chrV:435666-435949 - 6 2.29e-09 CTCTTAATCA TAAGGTTAGGGGTTCGAGCCC CCTAC chrV:135280-135616 - 38 2.29e-09 CTCTTAATCA TAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrXIV:104659-105046 + 44 2.29e-09 CTAGTAATGT GGAGATCATCGGTTCAAATCC GATTGGAAGC chrII:266217-266604 + 59 2.29e-09 CTAGTAATGT GGAGATCATCGGTTCAAATCC GATTGGAAGC chrIX:174944-175159 + 71 2.29e-09 CTAGTAATGT GGAGATCATCGGTTCAAATCC GATTGGAAG chrXIV:560594-560832 - 41 2.29e-09 CTAGTAATGT GGAGATCATCGGTTCAAATCC GATTGGAAGC chrIV:1201589-1201940 + 77 2.29e-09 CTCTTAATCA TAAGGTTAGGGGTTCGAGCCC CCT chrXV:353931-354264 - 5 2.29e-09 CTAGTAATGT GGAGATCATCGGTTCAAATCC GATT chrXIV:567991-568331 + 75 2.61e-09 AAAGCATGCG AGAGGCCCTGGGTTCAATTCC CAGCT chrXIV:547066-547329 + 18 2.61e-09 AAAGCATGCG AGAGGCCCTGGGTTCAATTCC CAGCTCGCCC chrIV:520816-521151 + 79 3.77e-09 GTTTTGATCC GGACAACCCCGGTTCGAATCC G chrIV:802621-802873 - 45 3.77e-09 GTTTTGATCC GGACAACCCCGGTTCGAATCC GGGTAGGACC chrVIII:134176-134489 + 79 3.77e-09 GTTTTGATCC GGACAACCCCGGTTCGAATCC G chrIV:645077-645238 - 57 3.77e-09 GTTTTGATCC GGACAACCCCGGTTCGAATCC GGGTAGGACC chrVI:180817-181192 - 31 6.04e-09 GTTGCCATCG TTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrXVI:572108-572457 + 76 6.04e-09 GTTGCCATCG TTGGGCCCCCGGTTCGATTCC GGGC chrX:531690-531790 + 68 6.04e-09 GTTGCCATCG TTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrX:538433-538533 + 72 6.76e-09 CTCCTAAGGA GAAGACTGCGGGTTCGAGTCC CGTACGGA chrVII:823342-823657 + 75 7.56e-09 TTAACACGCA GAACGTCCCCAGTTCGATCCT GGGCG chrXV:663719-664025 - 1 7.56e-09 TTAACACGCA GAACGTCCCCAGTTCGATCCT chrXIII:572741-573124 - 12 2.33e-08 CTCATAATCT GAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrIV:1175669-1176035 + 68 2.33e-08 CTCATAATCT GAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrXV:976350-976589 + 43 2.33e-08 CTCATAATCT GAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrX:422775-422875 + 65 2.33e-08 CTCATAATCT GAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrXI:578820-579218 + 60 2.33e-08 AAGGATACCG AAATGTCAGGGGTTCGAGCCC CCTATGAGGA chrXIV:632466-632771 + 73 4.38e-08 CTGTTAATCG CAAGATCGTGAGTTCAACCCT CACTGGG chrXV:487460-487585 + 9 4.38e-08 GTTAATCG CAAGATCGTGAGTTCAACCCT CACTGGGGTC chrXIV:102571-102925 + 60 4.38e-08 CTGTTAATCG CAAGATCGTGAGTTCAACCCT CACTGGGGTC chrXVI:810550-810829 + 79 4.38e-08 CTGTTAATCG CAAGATCGTGAGTTCAACCCT C chrXII:975870-976117 - 51 4.38e-08 CTGTTAATCG CAAGATCGTGAGTTCAACCCT CACTGGGGTC chrVI:137335-137706 - 27 4.38e-08 CTGTTAATCG CAAGATCGTGAGTTCAACCCT CACTGGGGTC chrXI:74476-74801 + 78 4.38e-08 CTGTTAATCG CAAGATCGTGAGTTCAACCCT CA chrXII:374195-374538 + 80 5.19e-08 CTACGAACCA GAAGATTCCAGGTTCAAGTCC chrIV:619848-620177 - 18 5.19e-08 CTACGAACCA GAAGATTCCAGGTTCAAGTCC TGGCGGGGAA chrVIII:466900-467131 + 65 9.05e-08 CTTGTAATGC AAAGGTCGCTAGTTCAATTCT GGCAGGTGGC chrXVI:56075-56380 - 3 1.13e-07 ATTGCAATCG AAGGGTTGCAGGTTCAATTCC TG chrXIII:168702-169023 + 40 1.40e-07 TACGAAATCT TGAGATCGGGCGTTCGACTCG CCCCCGGGAG chrX:354128-354228 + 64 1.40e-07 TACGAAATCT TGAGATCGGGCGTTCGACTCG CCCCCGGGAG chrXVI:744130-744487 + 66 1.40e-07 CTTGTAATGC AAAGGTCGTTAGTTCAATTCT GACAGGTGGC chrV:207384-207487 + 12 2.09e-07 GTTGTGGCCG ATGAAACCCTGGTTCGATTCT AGGAGATGGC chrVII:319742-319963 + 19 2.09e-07 GTTGTGGCCG ATGAAACCCTGGTTCGATTCT AGGAGATGGC chrV:434467-434635 - 51 2.09e-07 GTTGTGGCCG ATGAAACCCTGGTTCGATTCT AGGAGATGGC chrXI:313326-313569 - 15 2.09e-07 GTTGTGGCCG ATGAAACCCTGGTTCGATTCT AGGAGATGGC chrXIII:362924-363226 + 79 2.09e-07 GTTGTGGCCG ATGAAACCCTGGTTCGATTCT A chrXVI:435743-436135 - 15 2.52e-07 TTGCAAATCT GTTGGTCCTTAGTTCGATCCT GAGTGCGAGC chrVII:706978-707208 - 76 2.52e-07 ATCT GTTGGTCCTTAGTTCGATCCT GAGTGCGAGC chrXII:818486-818772 + 70 3.01e-07 CTTCCGGTGG CTGTGATCCGGGTTCGAGTCC CGGGAGGAGC chrX:204573-204673 + 68 3.78e-07 CTTGTCGCGT GCCAGATCGGGGTTCAATTCC CCGTCGCGGA chrVII:531471-531778 + 76 3.78e-07 CTTGTCGCGT GCCAGATCGGGGTTCAATTCC CCGT chrX:541403-541503 + 65 3.78e-07 CTTGTCGCGT GCCAGATCGGGGTTCAATTCC CCGTCGCGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGRTCMBSGGTTCGAYYCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631759-632038 6.7e-13 8_[-2]_71 chrIII:123463-123788 6.7e-13 12_[-2]_67 chrIX:210648-210840 7.3e-11 12_[+2]_67 chrIX:183322-183671 7.3e-11 4_[-2]_75 chrXII:734655-734985 7.3e-11 73_[+2]_6 chrV:443140-443380 7.3e-11 2_[-2]_77 chrV:311891-312244 1.8e-10 16_[-2]_63 chrXII:214786-215086 1.8e-10 7_[-2]_72 chrI:166140-166469 1.8e-10 53_[+2]_26 chrX:374297-374397 4.2e-10 50_[-2]_29 chrVII:736164-736540 4.2e-10 77_[+2]_2 chrVII:828528-828965 4.2e-10 37_[-2]_42 chrXI:162345-162708 4.2e-10 21_[-2]_58 chrII:405710-406113 4.2e-10 56_[+2]_23 chrX:355200-355300 4.2e-10 6_[+2]_73 chrVII:405416-405658 4.2e-10 22_[+2]_57 chrV:138501-138944 4.2e-10 33_[+2]_46 chrIV:568739-569126 4.2e-10 39_[+2]_40 chrIV:1075353-1075710 8.8e-10 1_[-2]_78 chrVIII:475559-475933 8.8e-10 20_[-2]_59 chrXII:656839-657150 1.2e-09 [-2]_79 chrVIII:146115-146332 1.2e-09 79_[-2] chrX:197209-197309 1.2e-09 5_[-2]_74 chrXVI:856885-857070 1.2e-09 15_[+2]_64 chrIV:488539-489021 1.3e-09 77_[-2]_2 chrXIV:96120-96461 1.3e-09 11_[-2]_68 chrXV:110873-111133 1.3e-09 19_[-2]_60 chrVII:328440-328835 1.8e-09 35_[+2]_44 chrV:176935-177377 1.8e-09 32_[+2]_47 chrIII:82444-82569 1.8e-09 16_[-2]_63 chrVII:401466-401606 1.8e-09 51_[-2]_28 chrVII:541688-542100 1.8e-09 45_[+2]_34 chrV:487254-487528 1.8e-09 [-2]_79 chrXI:140914-141231 1.8e-09 6_[-2]_73 chrIV:1352382-1352665 2.3e-09 3_[-2]_76 chrV:435666-435949 2.3e-09 5_[-2]_74 chrV:135280-135616 2.3e-09 37_[-2]_42 chrXIV:104659-105046 2.3e-09 43_[+2]_36 chrII:266217-266604 2.3e-09 58_[+2]_21 chrIX:174944-175159 2.3e-09 70_[+2]_9 chrXIV:560594-560832 2.3e-09 40_[-2]_39 chrIV:1201589-1201940 2.3e-09 76_[+2]_3 chrXV:353931-354264 2.3e-09 4_[-2]_75 chrXIV:567991-568331 2.6e-09 74_[+2]_5 chrXIV:547066-547329 2.6e-09 17_[+2]_62 chrIV:520816-521151 3.8e-09 78_[+2]_1 chrIV:802621-802873 3.8e-09 44_[-2]_35 chrVIII:134176-134489 3.8e-09 78_[+2]_1 chrIV:645077-645238 3.8e-09 56_[-2]_23 chrVI:180817-181192 6e-09 30_[-2]_49 chrXVI:572108-572457 6e-09 75_[+2]_4 chrX:531690-531790 6e-09 67_[+2]_12 chrX:538433-538533 6.8e-09 71_[+2]_8 chrVII:823342-823657 7.6e-09 74_[+2]_5 chrXV:663719-664025 7.6e-09 [-2]_79 chrXIII:572741-573124 2.3e-08 11_[-2]_68 chrIV:1175669-1176035 2.3e-08 67_[+2]_12 chrXV:976350-976589 2.3e-08 42_[+2]_37 chrX:422775-422875 2.3e-08 64_[+2]_15 chrXI:578820-579218 2.3e-08 59_[+2]_20 chrXIV:632466-632771 4.4e-08 72_[+2]_7 chrXV:487460-487585 4.4e-08 8_[+2]_71 chrXIV:102571-102925 4.4e-08 59_[+2]_20 chrXVI:810550-810829 4.4e-08 78_[+2]_1 chrXII:975870-976117 4.4e-08 50_[-2]_29 chrVI:137335-137706 4.4e-08 26_[-2]_53 chrXI:74476-74801 4.4e-08 77_[+2]_2 chrXII:374195-374538 5.2e-08 79_[+2] chrIV:619848-620177 5.2e-08 17_[-2]_62 chrVIII:466900-467131 9.1e-08 64_[+2]_15 chrXVI:56075-56380 1.1e-07 2_[-2]_77 chrXIII:168702-169023 1.4e-07 39_[+2]_40 chrX:354128-354228 1.4e-07 63_[+2]_16 chrXVI:744130-744487 1.4e-07 65_[+2]_14 chrV:207384-207487 2.1e-07 11_[+2]_68 chrVII:319742-319963 2.1e-07 18_[+2]_61 chrV:434467-434635 2.1e-07 50_[-2]_29 chrXI:313326-313569 2.1e-07 14_[-2]_65 chrXIII:362924-363226 2.1e-07 78_[+2]_1 chrXVI:435743-436135 2.5e-07 14_[-2]_65 chrVII:706978-707208 2.5e-07 75_[-2]_4 chrXII:818486-818772 3e-07 69_[+2]_10 chrX:204573-204673 3.8e-07 67_[+2]_12 chrVII:531471-531778 3.8e-07 75_[+2]_4 chrX:541403-541503 3.8e-07 64_[+2]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGRTCMBSGGTTCGAYYCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRAGRTCMBSGGTTCGAYYCC width=21 seqs=85 chrXIV:631759-632038 ( 9) GGAGGTCCCGGGTTCGAGTCC 1 chrIII:123463-123788 ( 13) GGAGGTCCCGGGTTCGAGTCC 1 chrIX:210648-210840 ( 13) GGGGATCAGCGGTTCGATCCC 1 chrIX:183322-183671 ( 5) GGGGATCAGCGGTTCGATCCC 1 chrXII:734655-734985 ( 74) GGGGATCAGCGGTTCGATCCC 1 chrV:443140-443380 ( 3) GGGGATCAGCGGTTCGATCCC 1 chrV:311891-312244 ( 17) AGAGGTCATCGGTTCGATTCC 1 chrXII:214786-215086 ( 8) AGAGGTCATCGGTTCGATTCC 1 chrI:166140-166469 ( 54) AGAGGTCATCGGTTCGATTCC 1 chrX:374297-374397 ( 51) GAAGATTATGGGTTCGACCCC 1 chrVII:736164-736540 ( 78) GAAGATTATGGGTTCGACCCC 1 chrVII:828528-828965 ( 38) GAAGATTATGGGTTCGACCCC 1 chrXI:162345-162708 ( 22) GAAGATTATGGGTTCGACCCC 1 chrII:405710-406113 ( 57) GAAGATTATGGGTTCGACCCC 1 chrX:355200-355300 ( 7) GAAGATTATGGGTTCGACCCC 1 chrVII:405416-405658 ( 23) GAAGATTATGGGTTCGACCCC 1 chrV:138501-138944 ( 34) GAAGATTATGGGTTCGACCCC 1 chrIV:568739-569126 ( 40) GAAGATTATGGGTTCGACCCC 1 chrIV:1075353-1075710 ( 2) AAAGGTCCCGAGTTCGATCCT 1 chrVIII:475559-475933 ( 21) AAAGGTCCCGAGTTCGATCCT 1 chrXII:656839-657150 ( 1) AGAGGTCTCCGGTTCGATTCC 1 chrVIII:146115-146332 ( 80) AGAGGTCTCCGGTTCGATTCC 1 chrX:197209-197309 ( 6) AGAGGTCTCCGGTTCGATTCC 1 chrXVI:856885-857070 ( 16) AGAGGTCTCCGGTTCGATTCC 1 chrIV:488539-489021 ( 78) GAAGATCCCGAGTTCGAACCT 1 chrXIV:96120-96461 ( 12) TGGGGACACGGGTTCGATTCT 1 chrXV:110873-111133 ( 20) TGGGGACACGGGTTCGATTCT 1 chrVII:328440-328835 ( 36) TGGAGACCGGGGTTCGACTCC 1 chrV:176935-177377 ( 33) TGGAGACCGGGGTTCGACTCC 1 chrIII:82444-82569 ( 17) TGGAGACCGGGGTTCGACTCC 1 chrVII:401466-401606 ( 52) TGGAGACCGGGGTTCGACTCC 1 chrVII:541688-542100 ( 46) TGGAGACCGGGGTTCGACTCC 1 chrV:487254-487528 ( 1) TGGAGACCGGGGTTCGACTCC 1 chrXI:140914-141231 ( 7) TGGAGACCGGGGTTCGACTCC 1 chrIV:1352382-1352665 ( 4) TAAGGTTAGGGGTTCGAGCCC 1 chrV:435666-435949 ( 6) TAAGGTTAGGGGTTCGAGCCC 1 chrV:135280-135616 ( 38) TAAGGTTAGGGGTTCGAGCCC 1 chrXIV:104659-105046 ( 44) GGAGATCATCGGTTCAAATCC 1 chrII:266217-266604 ( 59) GGAGATCATCGGTTCAAATCC 1 chrIX:174944-175159 ( 71) GGAGATCATCGGTTCAAATCC 1 chrXIV:560594-560832 ( 41) GGAGATCATCGGTTCAAATCC 1 chrIV:1201589-1201940 ( 77) TAAGGTTAGGGGTTCGAGCCC 1 chrXV:353931-354264 ( 5) GGAGATCATCGGTTCAAATCC 1 chrXIV:567991-568331 ( 75) AGAGGCCCTGGGTTCAATTCC 1 chrXIV:547066-547329 ( 18) AGAGGCCCTGGGTTCAATTCC 1 chrIV:520816-521151 ( 79) GGACAACCCCGGTTCGAATCC 1 chrIV:802621-802873 ( 45) GGACAACCCCGGTTCGAATCC 1 chrVIII:134176-134489 ( 79) GGACAACCCCGGTTCGAATCC 1 chrIV:645077-645238 ( 57) GGACAACCCCGGTTCGAATCC 1 chrVI:180817-181192 ( 31) TTGGGCCCCCGGTTCGATTCC 1 chrXVI:572108-572457 ( 76) TTGGGCCCCCGGTTCGATTCC 1 chrX:531690-531790 ( 68) TTGGGCCCCCGGTTCGATTCC 1 chrX:538433-538533 ( 72) GAAGACTGCGGGTTCGAGTCC 1 chrVII:823342-823657 ( 75) GAACGTCCCCAGTTCGATCCT 1 chrXV:663719-664025 ( 1) GAACGTCCCCAGTTCGATCCT 1 chrXIII:572741-573124 ( 12) GAAGGTCGAGAGTTCGAACCT 1 chrIV:1175669-1176035 ( 68) GAAGGTCGAGAGTTCGAACCT 1 chrXV:976350-976589 ( 43) GAAGGTCGAGAGTTCGAACCT 1 chrX:422775-422875 ( 65) GAAGGTCGAGAGTTCGAACCT 1 chrXI:578820-579218 ( 60) AAATGTCAGGGGTTCGAGCCC 1 chrXIV:632466-632771 ( 73) CAAGATCGTGAGTTCAACCCT 1 chrXV:487460-487585 ( 9) CAAGATCGTGAGTTCAACCCT 1 chrXIV:102571-102925 ( 60) CAAGATCGTGAGTTCAACCCT 1 chrXVI:810550-810829 ( 79) CAAGATCGTGAGTTCAACCCT 1 chrXII:975870-976117 ( 51) CAAGATCGTGAGTTCAACCCT 1 chrVI:137335-137706 ( 27) CAAGATCGTGAGTTCAACCCT 1 chrXI:74476-74801 ( 78) CAAGATCGTGAGTTCAACCCT 1 chrXII:374195-374538 ( 80) GAAGATTCCAGGTTCAAGTCC 1 chrIV:619848-620177 ( 18) GAAGATTCCAGGTTCAAGTCC 1 chrVIII:466900-467131 ( 65) AAAGGTCGCTAGTTCAATTCT 1 chrXVI:56075-56380 ( 3) AAGGGTTGCAGGTTCAATTCC 1 chrXIII:168702-169023 ( 40) TGAGATCGGGCGTTCGACTCG 1 chrX:354128-354228 ( 64) TGAGATCGGGCGTTCGACTCG 1 chrXVI:744130-744487 ( 66) AAAGGTCGTTAGTTCAATTCT 1 chrV:207384-207487 ( 12) ATGAAACCCTGGTTCGATTCT 1 chrVII:319742-319963 ( 19) ATGAAACCCTGGTTCGATTCT 1 chrV:434467-434635 ( 51) ATGAAACCCTGGTTCGATTCT 1 chrXI:313326-313569 ( 15) ATGAAACCCTGGTTCGATTCT 1 chrXIII:362924-363226 ( 79) ATGAAACCCTGGTTCGATTCT 1 chrXVI:435743-436135 ( 15) GTTGGTCCTTAGTTCGATCCT 1 chrVII:706978-707208 ( 76) GTTGGTCCTTAGTTCGATCCT 1 chrXII:818486-818772 ( 70) CTGTGATCCGGGTTCGAGTCC 1 chrX:204573-204673 ( 68) GCCAGATCGGGGTTCAATTCC 1 chrVII:531471-531778 ( 76) GCCAGATCGGGGTTCAATTCC 1 chrX:541403-541503 ( 65) GCCAGATCGGGGTTCAATTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGRTCMBSGGTTCGAYYCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 46944 bayes= 10.1046 E= 1.6e-270 -40 -101 128 -55 45 -242 112 -126 111 -242 52 -372 -82 -142 195 -372 60 -1305 148 -1305 -26 -142 -1305 111 -1305 199 -1305 -33 8 116 8 -272 -272 95 38 13 -314 64 158 -155 -40 -301 197 -1305 -1305 -1305 240 -1305 -1305 -1305 -1305 169 -1305 -1305 -1305 169 -1305 240 -1305 -1305 -26 -1305 197 -1305 169 -1305 -1305 -1305 -92 64 -55 41 -1305 116 -1305 89 -1305 240 -1305 -1305 -1305 180 -301 3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGRTCMBSGGTTCGAYYCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 85 E= 1.6e-270 0.235294 0.094118 0.458824 0.211765 0.423529 0.035294 0.411765 0.129412 0.670588 0.035294 0.270588 0.023529 0.176471 0.070588 0.729412 0.023529 0.470588 0.000000 0.529412 0.000000 0.258824 0.070588 0.000000 0.670588 0.000000 0.752941 0.000000 0.247059 0.329412 0.423529 0.200000 0.047059 0.047059 0.364706 0.247059 0.341176 0.035294 0.294118 0.564706 0.105882 0.235294 0.023529 0.741176 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.258824 0.000000 0.741176 0.000000 1.000000 0.000000 0.000000 0.000000 0.164706 0.294118 0.129412 0.411765 0.000000 0.423529 0.000000 0.576471 0.000000 1.000000 0.000000 0.000000 0.000000 0.658824 0.023529 0.317647 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGRTCMBSGGTTCGAYYCC MEME-2 regular expression -------------------------------------------------------------------------------- [GAT][AG][AG]G[GA][TA][CT][CAG][CTG][GC][GA]GTTC[GA]A[TC][TC]C[CT] -------------------------------------------------------------------------------- Time 632.39 secs. ******************************************************************************** ******************************************************************************** MOTIF KVAHRTGATARCCRYTACACTATM MEME-3 width = 24 sites = 32 llr = 709 E-value = 1.0e-128 ******************************************************************************** -------------------------------------------------------------------------------- Motif KVAHRTGATARCCRYTACACTATM MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3624::7:76::6::a3a::a16 pos.-specific C 1333:::3:::aa:3::7:a::14 probability G 55116:7::34::4:::::::::: matrix T 5::4:a3:a:::::7a::::a:81 bits 2.4 ** * 2.2 ** * 1.9 ** * 1.7 * * ** ** **** Relative 1.4 ** * ** ******* Entropy 1.2 *** * ** ******* (32.0 bits) 1.0 ******************* 0.7 *** ******************** 0.5 *** ******************** 0.2 ************************ 0.0 ------------------------ Multilevel GGATGTGATAACCATTACACTATA consensus TCCCA TC GG GC A C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVAHRTGATARCCRYTACACTATM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------ chrXVI:210105-210423 + 21 3.00e-13 GGTGAAAGCG TGATGTGATAGCCGTTACACTATA TCGGACAATA chrX:115827-115927 + 30 3.00e-13 GGTGAAAGCG TGATGTGATAGCCGTTACACTATA TCGGATTATA chrII:645008-645339 - 49 3.00e-13 GGTGAAAGCG TGATGTGATAGCCGTTACACTATA TCGGATAATA chrXII:797002-797348 - 58 3.00e-13 GGTGAAAGCG TGATGTGATAGCCGTTACACTATA TCGGACGACA chrIX:370252-370567 - 63 3.00e-13 GGTGAAAGCG TGATGTGATAGCCGTTACACTATA TCGGATTATA chrXIII:290647-290956 - 55 3.00e-13 GGTGAAAGCG TGATGTGATAGCCGTTACACTATA TCGGATTATA chrIII:82444-82569 + 49 3.00e-13 GGTGAAAGCG TGATGTGATAGCCGTTACACTATA TCGGATAACA chrVII:541688-542100 - 11 3.00e-13 GGTGAAAGCG TGATGTGATAGCCGTTACACTATA TCGGATGGTA chrV:487254-487528 + 33 3.00e-13 GGTGAAAGCG TGATGTGATAGCCGTTACACTATA TCGGATTAAA chrXI:140914-141231 + 39 3.00e-13 GGTGAAAGCG TGATGTGATAGCCGTTACACTATA TCGGATTACA chrIII:168213-168553 + 11 1.88e-11 GATCAAAACC GAAAGTGATAACCACTACACTATA GGACCAGGAC chrV:131022-131318 + 5 1.88e-11 AACC GAAAGTGATAACCACTACACTATA AAACCTCTTA chrII:350675-350963 - 63 1.88e-11 GATCAAAACC GAAAGTGATAACCACTACACTATA AAACCCTTTT chrXII:448543-448882 + 31 1.88e-11 GATCAAAACC GAAAGTGATAACCACTACACTATA GGACCGGAAC chrIV:520816-521151 - 44 1.88e-11 GATCAAAACC GAAAGTGATAACCACTACACTATA GGACCCTAAA chrVIII:134176-134489 - 44 1.88e-11 GATCAAAACC GAAAGTGATAACCACTACACTATA GGACCGGAAC chrIV:1017099-1017454 + 24 1.88e-11 GGTGAGAACG TGATGTGATAGCCGTTACACTACA TCGGATTGTA chrIX:197447-197737 - 55 1.88e-11 GGTGAGAACG TGATGTGATAGCCGTTACACTACA TCGGATTTGA chrIV:1075353-1075710 + 35 2.37e-10 CGTGTGAAGG CAACGTGATAGCCGCTACACTATT GGAACAATAT chrVIII:475559-475933 + 54 2.37e-10 CGTGTGAAGG CAACGTGATAGCCGCTACACTATT GGAACAGACT chrVII:544464-544822 + 27 3.67e-10 CGCGACAAGC GCCCATTCTGACCATTAAACTATC ACGGAAGAAA chrXII:793750-794050 - 73 3.67e-10 AAGC GCCCATTCTGACCATTAAACTATC ACGGATTATA chrIX:324216-324538 + 19 3.67e-10 CGCGACAAGC GCCCATTCTGACCATTAAACTATC ACGGAATATT chrX:204573-204673 - 33 3.67e-10 CGCGACAAGC GCCCATTCTGACCATTAAACTATC ACGGATTTTT chrXV:571791-572133 - 51 3.67e-10 CGCGACAAGC GCCCATTCTGACCATTAAACTATC ACGGATTTTA chrX:355200-355300 - 54 3.67e-10 CGCGACAAGC GCCCATTCTGACCATTAAACTATC ACGGAAGAAA chrVII:531471-531778 - 41 3.67e-10 CGCGACAAGC GCCCATTCTGACCATTAAACTATC ACGGAAGTAA chrXII:426960-427296 - 59 3.67e-10 CGCGACAAGC GCCCATTCTGACCATTAAACTATC ACGGATAAGA chrX:541403-541503 - 30 3.67e-10 CGCGACAAGC GCCCATTCTGACCATTAAACTATC ACGGATTTTC chrVII:779452-779761 - 65 5.52e-10 CTTGGAAGGG TGGGATGATAACCACTACACTAAC CGCCCGGGGT chrXIV:96120-96461 + 44 5.52e-10 CTTGGAAGGG TGGGATGATAACCACTACACTAAC CGCCCATGTG chrXV:110873-111133 + 52 5.52e-10 CTTGGAAGGG TGGGATGATAACCACTACACTAAC CGCCCGGGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVAHRTGATARCCRYTACACTATM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:210105-210423 3e-13 20_[+3]_56 chrX:115827-115927 3e-13 29_[+3]_47 chrII:645008-645339 3e-13 48_[-3]_28 chrXII:797002-797348 3e-13 57_[-3]_19 chrIX:370252-370567 3e-13 62_[-3]_14 chrXIII:290647-290956 3e-13 54_[-3]_22 chrIII:82444-82569 3e-13 48_[+3]_28 chrVII:541688-542100 3e-13 10_[-3]_66 chrV:487254-487528 3e-13 32_[+3]_44 chrXI:140914-141231 3e-13 38_[+3]_38 chrIII:168213-168553 1.9e-11 10_[+3]_66 chrV:131022-131318 1.9e-11 4_[+3]_72 chrII:350675-350963 1.9e-11 62_[-3]_14 chrXII:448543-448882 1.9e-11 30_[+3]_46 chrIV:520816-521151 1.9e-11 43_[-3]_33 chrVIII:134176-134489 1.9e-11 43_[-3]_33 chrIV:1017099-1017454 1.9e-11 23_[+3]_53 chrIX:197447-197737 1.9e-11 54_[-3]_22 chrIV:1075353-1075710 2.4e-10 34_[+3]_42 chrVIII:475559-475933 2.4e-10 53_[+3]_23 chrVII:544464-544822 3.7e-10 26_[+3]_50 chrXII:793750-794050 3.7e-10 72_[-3]_4 chrIX:324216-324538 3.7e-10 18_[+3]_58 chrX:204573-204673 3.7e-10 32_[-3]_44 chrXV:571791-572133 3.7e-10 50_[-3]_26 chrX:355200-355300 3.7e-10 53_[-3]_23 chrVII:531471-531778 3.7e-10 40_[-3]_36 chrXII:426960-427296 3.7e-10 58_[-3]_18 chrX:541403-541503 3.7e-10 29_[-3]_47 chrVII:779452-779761 5.5e-10 64_[-3]_12 chrXIV:96120-96461 5.5e-10 43_[+3]_33 chrXV:110873-111133 5.5e-10 51_[+3]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVAHRTGATARCCRYTACACTATM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KVAHRTGATARCCRYTACACTATM width=24 seqs=32 chrXVI:210105-210423 ( 21) TGATGTGATAGCCGTTACACTATA 1 chrX:115827-115927 ( 30) TGATGTGATAGCCGTTACACTATA 1 chrII:645008-645339 ( 49) TGATGTGATAGCCGTTACACTATA 1 chrXII:797002-797348 ( 58) TGATGTGATAGCCGTTACACTATA 1 chrIX:370252-370567 ( 63) TGATGTGATAGCCGTTACACTATA 1 chrXIII:290647-290956 ( 55) TGATGTGATAGCCGTTACACTATA 1 chrIII:82444-82569 ( 49) TGATGTGATAGCCGTTACACTATA 1 chrVII:541688-542100 ( 11) TGATGTGATAGCCGTTACACTATA 1 chrV:487254-487528 ( 33) TGATGTGATAGCCGTTACACTATA 1 chrXI:140914-141231 ( 39) TGATGTGATAGCCGTTACACTATA 1 chrIII:168213-168553 ( 11) GAAAGTGATAACCACTACACTATA 1 chrV:131022-131318 ( 5) GAAAGTGATAACCACTACACTATA 1 chrII:350675-350963 ( 63) GAAAGTGATAACCACTACACTATA 1 chrXII:448543-448882 ( 31) GAAAGTGATAACCACTACACTATA 1 chrIV:520816-521151 ( 44) GAAAGTGATAACCACTACACTATA 1 chrVIII:134176-134489 ( 44) GAAAGTGATAACCACTACACTATA 1 chrIV:1017099-1017454 ( 24) TGATGTGATAGCCGTTACACTACA 1 chrIX:197447-197737 ( 55) TGATGTGATAGCCGTTACACTACA 1 chrIV:1075353-1075710 ( 35) CAACGTGATAGCCGCTACACTATT 1 chrVIII:475559-475933 ( 54) CAACGTGATAGCCGCTACACTATT 1 chrVII:544464-544822 ( 27) GCCCATTCTGACCATTAAACTATC 1 chrXII:793750-794050 ( 73) GCCCATTCTGACCATTAAACTATC 1 chrIX:324216-324538 ( 19) GCCCATTCTGACCATTAAACTATC 1 chrX:204573-204673 ( 33) GCCCATTCTGACCATTAAACTATC 1 chrXV:571791-572133 ( 51) GCCCATTCTGACCATTAAACTATC 1 chrX:355200-355300 ( 54) GCCCATTCTGACCATTAAACTATC 1 chrVII:531471-531778 ( 41) GCCCATTCTGACCATTAAACTATC 1 chrXII:426960-427296 ( 59) GCCCATTCTGACCATTAAACTATC 1 chrX:541403-541503 ( 30) GCCCATTCTGACCATTAAACTATC 1 chrVII:779452-779761 ( 65) TGGGATGATAACCACTACACTAAC 1 chrXIV:96120-96461 ( 44) TGGGATGATAACCACTACACTAAC 1 chrXV:110873-111133 ( 52) TGGGATGATAACCACTACACTAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVAHRTGATARCCRYTACACTATM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 45183 bayes= 9.61366 E= 1.0e-128 -1164 -160 131 59 -31 57 131 -1164 101 57 -101 -1164 -73 86 -101 27 27 -1164 172 -1164 -1164 -1164 -1164 169 -1164 -1164 193 -14 121 57 -1164 -1164 -1164 -1164 -1164 169 121 -1164 57 -1164 86 -1164 121 -1164 -1164 240 -1164 -1164 -1164 240 -1164 -1164 86 -1164 121 -1164 -1164 86 -1164 108 -1164 -1164 -1164 169 169 -1164 -1164 -1164 -14 193 -1164 -1164 169 -1164 -1164 -1164 -1164 240 -1164 -1164 -1164 -1164 -1164 169 169 -1164 -1164 -1164 -173 -160 -1164 144 86 99 -1164 -231 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVAHRTGATARCCRYTACACTATM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 32 E= 1.0e-128 0.000000 0.062500 0.468750 0.468750 0.250000 0.281250 0.468750 0.000000 0.625000 0.281250 0.093750 0.000000 0.187500 0.343750 0.093750 0.375000 0.375000 0.000000 0.625000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.718750 0.281250 0.718750 0.281250 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.718750 0.000000 0.281250 0.000000 0.562500 0.000000 0.437500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.562500 0.000000 0.437500 0.000000 0.000000 0.343750 0.000000 0.656250 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.281250 0.718750 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.093750 0.062500 0.000000 0.843750 0.562500 0.375000 0.000000 0.062500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVAHRTGATARCCRYTACACTATM MEME-3 regular expression -------------------------------------------------------------------------------- [GT][GCA][AC][TC][GA]T[GT][AC]T[AG][AG]CC[AG][TC]TA[CA]ACTAT[AC] -------------------------------------------------------------------------------- Time 919.47 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:362924-363226 4.76e-05 78_[+2(2.09e-07)]_1 chrX:139546-139646 2.66e-01 100 chrXII:1029819-1030195 5.69e-01 100 chrXI:140914-141231 5.81e-15 6_[-2(1.76e-09)]_11_[+3(3.00e-13)]_\ 38 chrXII:232411-234160 6.59e-01 100 chrII:332361-332690 8.13e-01 100 chrV:441825-442575 1.20e-01 100 chrIV:568739-569126 7.53e-12 13_[+1(3.89e-09)]_3_[+2(4.16e-10)]_\ 40 chrXIII:762610-762986 1.00e+00 100 chrII:604178-604421 9.68e-01 100 chrXIV:241452-241699 7.63e-01 100 chrVII:557057-557433 9.47e-01 100 chrXII:241674-241960 3.80e-01 100 chrV:138501-138944 7.53e-12 7_[+1(3.89e-09)]_3_[+2(4.16e-10)]_\ 46 chrVII:916145-916521 7.28e-01 100 chrV:86427-86794 4.73e-04 58_[+1(3.89e-08)]_19 chrXV:867590-867966 5.30e-01 100 chrII:415554-415837 4.75e-01 100 chrXIV:415693-416069 2.21e-01 100 chrV:396248-396532 8.97e-01 100 chrXVI:856885-857070 7.99e-06 15_[+2(1.17e-09)]_64 chrXI:578820-579218 3.84e-11 10_[+1(2.61e-09)]_26_[+2(2.33e-08)]_\ 20 chrXI:302747-303159 2.90e-04 4_[-1(7.22e-05)]_1_[+1(5.22e-07)]_\ 49 chrXIV:64014-64390 8.75e-01 100 chrIV:1492108-1492484 2.52e-01 100 chrX:541403-541503 1.01e-09 29_[-3(3.67e-10)]_11_[+2(3.78e-07)]_\ 15 chrXIV:623987-624363 6.89e-01 100 chrVII:364182-364558 8.88e-01 100 chrXIV:547066-547329 3.74e-06 17_[+2(2.61e-09)]_62 chrXVI:693382-693758 4.50e-01 100 chrVII:399459-399835 5.89e-01 100 chrXII:426960-427296 5.88e-06 58_[-3(3.67e-10)]_18 chrXV:729198-729574 5.69e-01 100 chrIV:130633-130925 7.47e-01 100 chrXV:353931-354264 1.64e-13 4_[-2(2.29e-09)]_3_[-1(1.69e-11)]_\ 49 chrIV:117767-118143 8.62e-01 100 chrVII:440616-440977 9.85e-06 23_[-1(1.72e-09)]_54 chrXI:109675-110051 1.66e-01 100 chrXV:113665-113947 1.75e-07 60_[+1(1.69e-11)]_17 chrIII:137748-138124 6.66e-01 100 chrXI:259319-259523 5.48e-01 100 chrVII:648109-648485 1.41e-01 100 chrVII:405416-405658 1.05e-06 22_[+2(4.16e-10)]_57 chrIV:1489257-1489815 2.89e-01 100 chrXI:163953-164329 2.74e-02 25_[+2(6.50e-05)]_54 chrXIII:163773-164149 9.86e-01 100 chrIV:1236850-1236952 7.44e-02 100 chrXV:798185-798561 9.92e-01 100 chrIX:257403-257652 3.18e-01 100 chrIII:102909-103285 5.60e-03 1_[+2(5.15e-05)]_2_[+1(9.47e-05)]_\ 53 chrIV:491543-491919 9.60e-01 100 chrVII:738974-739285 1.08e-03 58_[+1(1.46e-07)]_19 chrVIII:445046-445422 3.02e-01 100 chrXVI:433444-433699 9.26e-01 100 chrVII:366148-366430 6.40e-01 100 chrXV:444782-445187 3.88e-01 100 chrII:301240-301362 9.22e-01 100 chrXIII:586558-586881 5.77e-01 100 chrXI:259598-259775 2.50e-01 100 chrXI:74476-74801 1.04e-11 18_[+3(5.92e-05)]_9_[+1(1.98e-09)]_\ 3_[+2(4.38e-08)]_2 chrXIII:887188-887291 2.47e-01 100 chrXIV:518871-519247 9.47e-01 100 chrV:396875-397251 6.00e-01 100 chrX:526310-526410 7.85e-01 100 chrIV:1305479-1305775 1.53e-04 67_[+1(3.89e-08)]_10 chrXVI:560080-560445 9.43e-06 39_[-1(1.72e-09)]_38 chrXVI:76409-76657 8.04e-01 100 chrXV:506532-506908 2.85e-01 100 chrII:306974-307350 9.59e-01 100 chrXIV:63170-63507 4.71e-01 100 chrXI:309332-309708 4.16e-02 100 chrXII:348368-348462 8.55e-01 94 chrIV:45483-45859 9.88e-02 100 chrII:606337-606713 1.82e-01 100 chrII:291117-291493 7.05e-01 100 chrVI:210517-210873 8.40e-04 22_[-1(4.85e-07)]_55 chrXIV:495246-495495 9.96e-01 100 chrXI:551995-552371 2.96e-01 100 chrIV:1201589-1201940 4.16e-12 50_[+1(1.49e-09)]_3_[+2(2.29e-09)]_\ 3 chrXV:622244-622345 9.10e-01 100 chrXV:92995-93297 8.92e-01 100 chrXVI:276713-277089 9.96e-01 100 chrX:531690-531790 5.12e-06 67_[+2(6.04e-09)]_12 chrVII:94245-94621 1.06e-01 100 chrIX:254284-254511 1.16e-01 100 chrVII:661581-661913 7.08e-06 65_[+1(5.71e-09)]_12 chrIII:102656-103032 9.10e-01 100 chrIV:579759-580242 8.83e-01 100 chrVI:223885-224261 1.00e+00 100 chrX:228040-228140 4.27e-01 100 chrVII:287237-287626 2.90e-04 37_[-1(5.22e-07)]_1_[+1(8.27e-05)]_\ 16 chrV:53579-53876 9.71e-01 100 chrVII:520139-520515 5.07e-02 69_[-2(4.48e-05)]_10 chrVII:412184-412526 2.89e-01 100 chrXIII:888712-889088 8.84e-01 100 chrXV:110873-111133 2.14e-12 19_[-2(1.35e-09)]_11_[+3(5.52e-10)]_\ 25 chrIV:306638-307014 1.90e-01 100 chrXVI:701203-701579 5.39e-02 100 chrVII:310937-311956 2.96e-01 100 chrXVI:821715-822091 9.91e-01 100 chrVII:531471-531778 1.01e-09 40_[-3(3.67e-10)]_11_[+2(3.78e-07)]_\ 4 chrIV:437607-437932 3.81e-04 67_[+1(3.89e-08)]_10 chrXVI:194214-194590 8.12e-01 100 chrXVI:75471-75847 8.59e-01 100 chrVIII:62599-62928 1.20e-01 100 chrV:99973-100312 1.45e-05 54_[+1(1.85e-08)]_23 chrXII:424122-424498 8.45e-01 100 chrXI:432612-432988 2.98e-01 100 chrVIII:125967-126266 6.96e-01 100 chrVI:137335-137706 6.31e-10 26_[-2(4.38e-08)]_3_[-1(1.98e-09)]_\ 27 chrVII:422910-423291 3.24e-03 57_[+1(5.22e-07)]_20 chrXVI:572108-572457 2.36e-05 75_[+2(6.04e-09)]_4 chrV:354776-355052 5.92e-09 74_[-3(3.00e-13)]_2 chrXIV:174416-174792 5.71e-02 47_[+1(6.53e-05)]_30 chrII:604774-604914 5.74e-01 100 chrVIII:148254-148630 4.37e-01 100 chrX:538433-538533 2.88e-10 45_[+1(1.32e-08)]_3_[+2(6.76e-09)]_\ 8 chrV:142524-142900 8.87e-01 100 chrVII:930916-931169 5.36e-01 100 chrVII:480186-480570 8.38e-01 100 chrXV:759230-759415 5.13e-01 100 chrX:422775-422875 4.77e-09 38_[+1(8.49e-08)]_3_[+2(2.33e-08)]_\ 15 chrXV:594271-594593 1.83e-02 14_[+3(9.05e-05)]_62 chrV:487254-487528 5.81e-15 [-2(1.76e-09)]_11_[+3(3.00e-13)]_44 chrIV:1355045-1355421 2.73e-01 100 chrIII:227769-228165 1.73e-04 39_[+1(3.17e-08)]_38 chrXVI:772979-773355 6.62e-01 100 chrVII:255179-255555 4.90e-01 100 chrVII:700495-701188 9.03e-01 100 chrVII:482407-482753 2.05e-01 100 chrVI:64189-64565 9.71e-01 100 chrXV:505762-506138 2.30e-01 100 chrI:166140-166469 2.93e-11 27_[+1(3.52e-08)]_3_[+2(1.82e-10)]_\ 26 chrXV:968103-968479 3.30e-01 100 chrV:269406-269782 8.01e-01 100 chrIV:411307-411590 8.10e-01 100 chrXI:458453-458782 1.99e-04 5_[+1(5.22e-07)]_72 chrIV:645077-645238 6.76e-05 56_[-2(3.77e-09)]_23 chrXVI:302755-302933 9.65e-01 100 chrX:355200-355300 5.44e-13 6_[+2(4.16e-10)]_26_[-3(3.67e-10)]_\ 23 chrXVI:699996-700312 5.57e-01 100 chrXVI:376896-377272 4.54e-01 100 chrII:36244-36555 9.89e-06 63_[+1(1.72e-09)]_14 chrV:305826-306160 8.29e-01 100 chrV:85163-85420 4.20e-01 100 chrIV:1402980-1403159 9.17e-01 100 chrXV:80673-81049 4.44e-01 100 chrXVI:404984-405541 8.09e-01 100 chrXI:520545-520921 2.88e-01 100 chrXI:108810-109011 5.85e-01 100 chrXIII:123131-123507 1.47e-01 100 chrVII:541688-542100 5.81e-15 10_[-3(3.00e-13)]_11_[+2(1.76e-09)]_\ 34 chrXVI:769101-769477 1.28e-06 25_[-1(2.61e-09)]_52 chrXII:214786-215086 2.93e-11 7_[-2(1.82e-10)]_3_[-1(3.52e-08)]_\ 46 chrXIV:560594-560832 1.64e-13 40_[-2(2.29e-09)]_3_[-1(1.69e-11)]_\ 13 chrXVI:481539-481915 6.15e-01 100 chrVII:149162-149481 3.66e-01 100 chrII:89044-89420 7.56e-01 100 chrIX:68265-68470 7.22e-01 100 chrVII:401466-401606 2.03e-05 51_[-2(1.76e-09)]_28 chrIX:197447-197737 2.31e-07 54_[-3(1.88e-11)]_22 chrXI:313326-313569 7.54e-05 14_[-2(2.09e-07)]_65 chrII:405710-406113 7.53e-12 30_[+1(3.89e-09)]_3_[+2(4.16e-10)]_\ 23 chrVII:427336-427712 2.69e-01 100 chrIV:1017099-1017454 7.58e-08 23_[+3(1.88e-11)]_53 chrVII:882747-883041 2.47e-01 100 chrVII:545341-545717 9.96e-01 100 chrXVI:819360-819696 4.01e-05 2_[+3(9.89e-05)]_40_[+1(1.46e-07)]_\ 11 chrXV:832428-832536 4.44e-01 100 chrVII:806835-807211 8.63e-01 100 chrXIV:229637-230013 5.12e-01 100 chrXII:261180-261556 9.77e-01 100 chrVII:706978-707208 1.16e-03 75_[-2(2.52e-07)]_4 chrII:237836-238212 7.84e-01 100 chrX:523921-524021 1.02e-04 11_[-1(3.89e-08)]_66 chrXIII:225960-226336 1.49e-01 100 chrXI:327162-327413 8.56e-01 100 chrI:142227-142603 5.29e-01 100 chrII:612255-612631 8.49e-01 100 chrVII:876248-876556 3.08e-06 56_[+1(1.49e-09)]_21 chrXV:622750-622958 2.33e-01 100 chrXII:460489-460753 3.56e-02 67_[+1(8.84e-05)]_10 chrXV:866595-866899 1.53e-01 100 chrXIV:302868-302991 7.37e-01 100 chrIII:82444-82569 5.81e-15 16_[-2(1.76e-09)]_11_[+3(3.00e-13)]_\ 28 chrX:617749-617849 5.35e-03 67_[+1(2.29e-06)]_10 chrIX:389422-389798 8.80e-01 100 chrIII:138505-138881 4.13e-01 100 chrXII:975870-976117 5.10e-10 50_[-2(4.38e-08)]_3_[-1(1.98e-09)]_\ 3 chrV:68487-68593 9.14e-01 100 chrXV:254353-254729 7.20e-01 100 chrIV:466439-466815 2.85e-01 100 chrX:349148-349248 1.63e-01 100 chrIV:308567-308943 7.78e-01 100 chrVIII:358363-358739 6.14e-06 30_[-1(1.72e-09)]_47 chrIX:174944-175159 1.64e-13 44_[+1(1.69e-11)]_3_[+2(2.29e-09)]_\ 9 chrII:478946-479322 7.77e-01 100 chrVII:727756-728132 2.52e-01 100 chrXVI:654259-654635 7.92e-01 100 chrXII:263588-263964 8.57e-01 100 chrXII:1017662-1018038 9.45e-01 100 chrXII:922168-922497 7.52e-01 100 chrIV:1300982-1301269 5.25e-01 100 chrXI:219730-220052 1.98e-04 68_[+1(1.34e-06)]_9 chrV:363664-364040 5.41e-01 100 chrXII:818486-818772 5.43e-06 34_[-3(1.39e-05)]_11_[+2(3.01e-07)]_\ 10 chrXI:379532-379823 2.29e-01 100 chrII:326707-327034 5.10e-02 100 chrX:702667-702767 8.84e-01 100 chrXV:505159-505454 6.97e-01 100 chrXV:621075-621245 8.95e-02 100 chrVII:533831-534207 5.66e-01 100 chrXI:162345-162708 7.53e-12 21_[-2(4.16e-10)]_3_[-1(3.89e-09)]_\ 32 chrIV:619848-620177 3.65e-08 17_[-2(5.19e-08)]_3_[-1(1.46e-07)]_\ 36 chrVII:399661-400037 8.88e-01 100 chrIII:123463-123788 4.10e-09 12_[-2(6.71e-13)]_67 chrXVI:272003-272379 8.36e-01 100 chrVII:648990-649310 4.17e-01 100 chrV:51887-52263 9.37e-01 100 chrXI:308055-308364 4.74e-01 100 chrVIII:494496-494872 3.95e-01 100 chrXIV:567991-568331 3.75e-06 74_[+2(2.61e-09)]_5 chrXI:283363-283496 9.26e-01 100 chrXIII:732071-732346 6.58e-01 100 chrV:78099-78475 2.99e-01 100 chrII:45051-45293 3.96e-01 100 chrVII:278132-278271 1.14e-01 100 chrX:415853-415953 2.70e-04 19_[-1(5.22e-07)]_58 chrII:392960-393336 8.73e-01 100 chrIV:83398-83705 4.23e-02 15_[+1(7.99e-05)]_62 chrII:394085-394461 9.61e-01 100 chrII:256246-256622 4.65e-01 100 chrXI:490794-491099 9.92e-01 100 chrII:236897-237273 9.11e-01 100 chrXIV:631759-632038 8.84e-09 8_[-2(6.71e-13)]_71 chrXVI:282460-282836 6.68e-01 100 chrVIII:127103-127479 2.62e-01 100 chrVIII:132950-133293 5.86e-01 100 chrXV:571791-572133 3.61e-06 50_[-3(3.67e-10)]_26 chrXIII:298530-298802 5.50e-01 100 chrXV:710045-710340 9.26e-05 72_[+1(1.85e-08)]_5 chrVII:148551-148927 7.57e-01 100 chrX:204573-204673 1.01e-09 32_[-3(3.67e-10)]_11_[+2(3.78e-07)]_\ 12 chrXI:113910-114286 9.68e-01 100 chrXIV:716175-716428 8.86e-02 100 chrXIII:297146-297819 1.14e-01 100 chrVII:439455-439551 7.30e-01 96 chrXII:636898-637118 6.58e-01 100 chrXII:242324-242700 9.44e-01 100 chrXI:38676-39052 5.03e-01 100 chrXII:784192-784545 1.84e-01 100 chrXIII:224032-224408 5.23e-01 100 chrXIII:632789-633165 3.34e-01 100 chrX:122347-122447 6.84e-01 100 chrXVI:173071-173242 4.06e-01 100 chrXIV:577070-577446 2.50e-01 100 chrIX:68738-69114 2.88e-01 100 chrIX:99692-99963 7.89e-01 100 chrXIII:747796-748116 1.84e-05 20_[-1(3.89e-09)]_57 chrV:483375-483751 9.76e-01 100 chrV:288310-288688 4.91e-07 37_[-1(6.05e-10)]_40 chrX:517741-517841 1.45e-05 19_[-1(1.85e-08)]_58 chrVIII:127313-127689 9.59e-02 100 chrXV:619741-620117 2.81e-01 100 chrXV:305513-305889 5.54e-01 100 chrXV:728997-729373 9.17e-01 100 chrXVI:810550-810829 6.31e-10 52_[+1(1.98e-09)]_3_[+2(4.38e-08)]_\ 1 chrXVI:744130-744487 1.04e-09 39_[+1(5.71e-09)]_3_[+2(1.40e-07)]_\ 14 chrII:89669-89939 1.56e-01 100 chrXV:281992-282317 5.34e-01 100 chrXI:617604-617980 9.90e-01 100 chrXV:976350-976589 4.77e-09 16_[+1(8.49e-08)]_3_[+2(2.33e-08)]_\ 37 chrXIII:290647-290956 5.25e-09 54_[-3(3.00e-13)]_22 chrXVI:378038-378414 7.65e-01 100 chrIV:118449-118825 8.97e-01 100 chrXII:713200-713520 6.02e-01 100 chrXIII:499679-499904 5.75e-01 100 chrII:59996-60372 9.85e-01 100 chrX:197209-197309 5.31e-10 5_[-2(1.17e-09)]_3_[-1(1.34e-06)]_\ 48 chrXIV:88987-89388 1.81e-01 100 chrII:266217-266604 1.64e-13 32_[+1(1.69e-11)]_3_[+2(2.29e-09)]_\ 21 chrV:443140-443380 8.07e-11 2_[-2(7.31e-11)]_3_[-1(1.46e-07)]_\ 51 chrXII:499074-499463 6.09e-01 100 chrIX:324216-324538 6.74e-06 18_[+3(3.67e-10)]_58 chrXIII:754467-754721 8.20e-01 100 chrII:226947-227269 2.04e-05 31_[+1(3.89e-08)]_46 chrXII:897776-897977 9.88e-01 100 chrXII:1029293-1029669 6.87e-01 100 chrXIII:550779-551155 3.56e-01 100 chrIX:370252-370567 4.88e-09 62_[-3(3.00e-13)]_14 chrXV:678917-679140 4.18e-01 100 chrVII:788378-788686 5.30e-01 100 chrXII:281956-282332 7.09e-01 100 chrIV:1163772-1164148 2.96e-01 100 chrVII:857276-857633 4.02e-03 48_[-1(5.22e-07)]_29 chrXVI:109809-110185 5.64e-01 100 chrIX:390361-390737 9.51e-01 100 chrIX:316863-317239 6.97e-01 100 chrXVI:173220-173596 2.20e-01 100 chrXIV:96120-96461 2.14e-12 11_[-2(1.35e-09)]_11_[+3(5.52e-10)]_\ 33 chrXIII:552725-553101 2.83e-01 100 chrIV:914405-914781 7.95e-01 100 chrXVI:718679-718951 6.34e-01 100 chrVII:702207-702583 7.30e-01 100 chrIV:488539-489021 1.36e-05 77_[-2(1.35e-09)]_2 chrXV:977902-978278 4.93e-01 100 chrIV:1150718-1151106 6.58e-01 100 chrIV:1175669-1176035 4.77e-09 41_[+1(8.49e-08)]_3_[+2(2.33e-08)]_\ 12 chrX:122147-122247 1.64e-01 100 chrXII:930720-931096 9.35e-01 100 chrXV:300928-301322 2.06e-01 100 chrXVI:194107-194256 5.94e-01 100 chrXIII:761956-762332 2.15e-01 100 chrXII:931548-931924 8.92e-01 100 chrXII:1019029-1019315 4.67e-01 100 chrXV:28821-29197 2.76e-01 100 chrXVI:108864-109240 7.20e-01 100 chrXII:637374-637679 1.57e-01 100 chrVII:609417-609793 6.36e-01 100 chrVII:828528-828965 7.53e-12 37_[-2(4.16e-10)]_3_[-1(3.89e-09)]_\ 16 chrVIII:120166-120542 4.01e-01 100 chrIII:142629-142938 4.71e-01 100 chrIX:248698-249035 5.93e-06 48_[+1(6.05e-10)]_29 chrII:197337-197629 7.33e-04 76_[+1(1.46e-07)]_1 chrVII:1052954-1053330 6.95e-01 100 chrVIII:134176-134489 2.92e-13 43_[-3(1.88e-11)]_11_[+2(3.77e-09)]_\ 1 chrXV:253196-253572 2.64e-01 100 chrXIV:494631-495007 6.10e-01 100 chrXIV:500361-500716 9.16e-01 100 chrIV:341321-341579 6.29e-01 100 chrII:38290-38666 9.19e-01 100 chrXII:899236-899612 7.53e-01 100 chrIV:527084-527460 2.15e-01 100 chrX:608626-608726 3.40e-01 100 chrXIV:104659-105046 1.64e-13 17_[+1(1.69e-11)]_3_[+2(2.29e-09)]_\ 36 chrX:354128-354228 9.39e-08 23_[+1(4.85e-07)]_17_[+2(1.40e-07)]_\ 16 chrX:424353-424453 5.79e-04 6_[-1(7.44e-07)]_71 chrII:46083-46199 3.43e-01 100 chrVII:277585-277961 5.01e-01 100 chrXIV:442845-443330 1.03e-01 100 chrXII:374195-374538 1.89e-08 53_[+1(1.46e-07)]_3_[+2(5.19e-08)] chrXIV:374733-375026 1.03e-05 54_[+1(1.72e-09)]_23 chrXIV:253644-254020 5.68e-01 100 chrV:469298-469624 5.40e-01 100 chrIV:359408-359781 1.28e-06 47_[+1(2.61e-09)]_30 chrIII:127562-127879 2.36e-05 61_[+1(1.98e-09)]_16 chrX:703305-703405 7.17e-01 100 chrX:75405-75505 8.36e-01 100 chrXV:473086-473462 3.20e-03 20_[+2(4.10e-05)]_59 chrIV:355613-355989 3.47e-02 100 chrXIII:168702-169023 6.31e-04 39_[+2(1.40e-07)]_40 chrVII:609616-609992 8.84e-01 100 chrXII:47638-48014 8.87e-01 100 chrXIV:230346-230722 4.05e-01 100 chrVIII:35497-35903 7.28e-01 100 chrV:438554-438855 3.47e-01 100 chrVII:826706-827082 9.84e-01 100 chrX:414805-414905 4.75e-06 57_[+1(1.49e-09)]_20 chrVII:555365-555640 1.48e-01 100 chrIX:317833-318209 7.74e-01 100 chrIV:946278-946598 3.35e-01 100 chrXIII:220228-220604 6.43e-01 100 chrVII:727287-727663 2.62e-02 100 chrXII:793750-794050 1.69e-07 8_[+1(9.47e-05)]_41_[-3(3.67e-10)]_\ 4 chrIV:802621-802873 2.92e-13 44_[-2(3.77e-09)]_11_[+3(1.88e-11)] chrXII:712423-712550 8.30e-01 100 chrXIV:444538-444718 8.16e-01 100 chrXII:797002-797348 5.25e-09 57_[-3(3.00e-13)]_19 chrXIII:552017-552393 3.91e-01 100 chrXIV:575399-575589 9.74e-01 100 chrV:78308-78684 4.95e-01 100 chrV:434467-434635 1.43e-03 50_[-2(2.09e-07)]_29 chrIV:323127-323254 7.43e-01 100 chrIV:555988-556099 5.90e-01 100 chrXII:794355-794747 9.24e-01 100 chrXVI:452772-453148 6.76e-02 100 chrVIII:466900-467131 2.14e-09 38_[+1(5.71e-09)]_3_[+2(9.05e-08)]_\ 15 chrXIII:225396-225690 2.91e-01 100 chrXIV:726069-726308 2.48e-04 40_[-1(7.44e-07)]_37 chrXV:274501-274883 3.65e-03 45_[+1(5.22e-07)]_32 chrI:72924-73085 2.45e-01 100 chrXII:201982-202250 1.40e-02 77_[+1(8.55e-05)] chrVII:544464-544822 6.24e-06 26_[+3(3.67e-10)]_50 chrIV:308067-308335 6.16e-01 100 chrXII:366085-366471 2.24e-01 100 chrXVI:378715-378911 7.22e-01 100 chrIV:520816-521151 2.92e-13 43_[-3(1.88e-11)]_11_[+2(3.77e-09)]_\ 1 chrIV:1239422-1239798 7.41e-01 100 chrXIII:259062-259398 4.71e-04 21_[-1(3.89e-08)]_56 chrXIV:586102-586282 5.41e-01 100 chrVI:220871-221247 9.96e-01 100 chrVIII:146115-146332 1.55e-06 79_[-2(1.17e-09)] chrII:60927-61214 9.85e-01 100 chrVII:727534-727910 5.14e-01 100 chrXVI:731969-732270 3.39e-01 100 chrVII:1049373-1049749 8.66e-01 100 chrVII:798573-798949 3.77e-01 100 chrXI:163505-163881 6.42e-01 100 chrII:477079-477407 2.82e-01 100 chrV:176935-177377 7.39e-06 32_[+2(1.76e-09)]_47 chrXIII:297158-297819 1.14e-01 100 chrII:645008-645339 5.00e-09 48_[-3(3.00e-13)]_28 chrXI:552197-552573 6.06e-01 100 chrVIII:475559-475933 7.16e-13 20_[-2(8.81e-10)]_12_[+3(2.37e-10)]_\ 23 chrXVI:820306-820682 7.07e-01 100 chrXII:167865-168187 2.43e-04 11_[-1(3.89e-08)]_66 chrVII:310548-310850 6.62e-01 100 chrXIII:352121-352438 1.91e-06 65_[+1(1.72e-09)]_12 chrVII:319742-319963 6.00e-04 18_[+2(2.09e-07)]_61 chrX:156792-156892 1.12e-01 100 chrIV:945857-945972 2.75e-01 100 chrV:207384-207487 1.68e-03 11_[+2(2.09e-07)]_68 chrIV:1270380-1270756 4.97e-01 100 chrXII:449771-450147 4.05e-01 100 chrVII:346199-346371 3.70e-02 100 chrXII:498555-498850 9.21e-01 100 chrVII:205363-205722 4.02e-03 44_[+1(5.22e-07)]_33 chrXII:263798-264174 7.71e-01 100 chrIV:325456-325832 9.61e-01 100 chrXV:663719-664025 2.79e-05 [-2(7.56e-09)]_79 chrXVI:136243-136619 2.37e-01 100 chrX:622540-622640 8.35e-01 100 chrIV:130111-130325 9.58e-01 100 chrI:82010-82192 5.13e-01 100 chrXIV:628346-628722 3.11e-02 100 chrXIII:296866-297089 7.67e-01 100 chrVIII:382324-382700 5.74e-01 100 chrIII:308637-309013 7.90e-04 37_[-2(4.10e-05)]_42 chrXV:87475-87851 9.32e-01 100 chrVIII:237730-238096 9.05e-06 38_[-1(1.72e-09)]_39 chrXIV:575620-575742 3.28e-01 100 chrXV:159477-160179 4.11e-01 100 chrV:307187-307563 5.51e-01 100 chrX:233773-233873 7.50e-04 76_[+1(1.46e-07)]_1 chrXIV:416739-417115 2.73e-01 100 chrXIV:721363-721739 9.47e-01 100 chrX:444201-444301 3.60e-01 100 chrII:592939-593251 7.28e-02 100 chrXII:498679-499055 7.06e-01 100 chrXVI:188670-188875 3.59e-02 100 chrXIV:102571-102925 6.31e-10 33_[+1(1.98e-09)]_3_[+2(4.38e-08)]_\ 20 chrXIII:551412-551758 7.62e-01 100 chrXIV:174376-174480 9.55e-01 100 chrX:123957-124057 9.31e-01 100 chrXVI:173465-173670 7.44e-01 100 chrX:120421-120521 6.87e-01 100 chrXIII:626370-626746 2.34e-01 100 chrXV:93937-94149 5.51e-01 100 chrI:67308-67684 9.29e-01 100 chrVII:823342-823657 2.79e-05 74_[+2(7.56e-09)]_5 chrV:311891-312244 2.93e-11 16_[-2(1.82e-10)]_3_[-1(3.52e-08)]_\ 37 chrV:157276-157652 9.15e-01 100 chrXII:734655-734985 2.35e-11 47_[+1(1.46e-07)]_3_[+2(7.31e-11)]_\ 6 chrXII:1018247-1018623 4.66e-01 100 chrXIII:91831-92092 9.52e-01 100 chrVIII:381675-381804 8.93e-01 100 chrIV:1461583-1461852 1.59e-01 100 chrXII:781502-781809 9.93e-01 100 chrVII:115331-115701 1.28e-06 36_[+1(2.61e-09)]_41 chrXII:448543-448882 9.73e-08 30_[+3(1.88e-11)]_46 chrVI:180817-181192 1.54e-05 30_[-2(6.04e-09)]_49 chrIV:356496-356872 3.08e-02 40_[-2(3.51e-05)]_39 chrVII:730969-731323 2.36e-05 56_[+1(1.98e-09)]_21 chrVII:365017-365393 9.96e-01 100 chrXII:1002336-1002712 6.41e-01 100 chrVIII:126522-126898 5.94e-01 100 chrII:350675-350963 8.32e-08 62_[-3(1.88e-11)]_14 chrXVI:719023-719146 8.89e-01 100 chrXIII:162392-162768 6.26e-01 100 chrXVI:56075-56380 2.97e-07 2_[-2(1.13e-07)]_37_[-1(5.22e-07)]_\ 17 chrIV:579759-580209 9.43e-01 100 chrVII:736164-736540 5.47e-12 51_[+1(3.89e-09)]_3_[+2(4.16e-10)]_\ 2 chrIX:316175-316561 3.31e-02 100 chrXII:794891-795209 4.76e-01 100 chrVI:157863-158173 1.03e-05 1_[-1(1.72e-09)]_76 chrI:72010-72331 1.30e-01 100 chrII:235090-235466 8.60e-01 100 chrXIII:131731-132051 3.09e-05 18_[-1(3.89e-09)]_59 chrXII:1028274-1028528 6.05e-01 100 chrV:131022-131318 1.77e-07 4_[+3(1.88e-11)]_72 chrXII:283062-283676 8.80e-01 100 chrVII:600392-600768 7.94e-01 100 chrX:115827-115927 5.25e-09 29_[+3(3.00e-13)]_47 chrXV:487460-487585 1.01e-04 8_[+2(4.38e-08)]_71 chrII:681423-681734 9.00e-01 100 chrXIII:251925-252301 6.25e-01 100 chrXIII:511253-511629 1.43e-01 100 chrIV:916838-917214 3.02e-01 100 chrXI:46677-46960 4.05e-05 1_[-1(8.26e-09)]_76 chrXV:779745-780046 9.37e-01 100 chrVII:726484-726722 9.46e-01 100 chrXIV:229857-230233 3.29e-01 100 chrXII:500652-501028 2.39e-01 100 chrVII:555919-556295 4.56e-01 100 chrIII:168213-168553 1.75e-07 10_[+3(1.88e-11)]_66 chrXVI:192395-192771 2.52e-01 100 chrXIV:417848-418224 8.89e-01 100 chrXII:48153-48529 6.85e-01 100 chrXII:656839-657150 5.31e-10 [-2(1.17e-09)]_3_[-1(1.34e-06)]_53 chrXV:900734-901110 9.10e-02 43_[-3(4.88e-05)]_33 chrXIII:288129-288505 6.00e-01 100 chrVIII:148979-149208 7.37e-01 100 chrIV:1075353-1075710 9.35e-14 1_[-2(8.81e-10)]_12_[+3(2.37e-10)]_\ 42 chrXIV:499832-500255 9.84e-01 100 chrVIII:103950-104193 9.34e-01 100 chrIII:295364-295618 1.48e-07 57_[+1(1.69e-11)]_20 chrXII:910605-910981 7.28e-01 100 chrII:482054-482430 9.80e-01 100 chrV:85753-86432 6.93e-01 100 chrXIII:145938-146226 1.67e-01 100 chrIV:884218-884581 1.83e-05 26_[+1(3.71e-06)]_51 chrIX:183322-183671 8.98e-11 4_[-2(7.31e-11)]_3_[-1(1.46e-07)]_\ 49 chrX:374297-374397 2.69e-18 [+3(3.67e-10)]_26_[-2(4.16e-10)]_3_\ [-1(3.89e-09)]_3 chrXV:780027-780802 2.43e-01 100 chrIV:221442-221818 8.51e-02 100 chrXIII:500167-500573 2.58e-01 100 chrIV:332070-332446 3.11e-01 100 chrXV:1028124-1028341 9.45e-01 100 chrIII:177237-177613 6.46e-01 100 chrXVI:435743-436135 2.08e-07 14_[-2(2.52e-07)]_3_[-1(3.58e-07)]_\ 39 chrVII:284086-284462 4.86e-01 100 chrXII:819958-820334 7.23e-01 100 chrXII:806493-806715 8.21e-01 100 chrXVI:406248-406501 1.87e-01 100 chrXIV:283161-283537 5.00e-01 100 chrV:135280-135616 4.16e-12 37_[-2(2.29e-09)]_3_[-1(1.49e-09)]_\ 16 chrII:255139-255515 7.75e-01 100 chrIV:358174-358336 7.71e-01 100 chrXII:875233-875557 1.28e-06 45_[+1(2.61e-09)]_32 chrXV:620534-620710 6.62e-01 100 chrIV:579113-579338 4.14e-01 100 chrXII:459529-460081 8.03e-01 100 chrVII:254192-254506 2.56e-01 100 chrII:680325-680701 8.49e-01 100 chrIV:323247-323623 5.53e-01 100 chrVI:95524-95793 5.94e-01 100 chrXVI:303491-303805 7.20e-02 100 chrXI:334551-334798 3.92e-02 53_[+1(4.70e-05)]_24 chrXV:648556-648932 7.70e-01 100 chrI:138999-139308 1.98e-01 100 chrV:117722-118222 9.45e-01 100 chrIV:309117-309493 2.42e-01 100 chrV:306987-307363 4.74e-01 100 chrV:101064-101440 4.72e-01 100 chrIX:210648-210840 1.40e-06 12_[+2(7.31e-11)]_67 chrX:652148-652248 9.03e-01 100 chrIV:1236983-1237359 6.67e-01 100 chrXIV:632466-632771 6.31e-10 46_[+1(1.98e-09)]_3_[+2(4.38e-08)]_\ 7 chrIV:1095265-1095610 2.25e-05 36_[-1(1.72e-09)]_41 chrV:435666-435949 4.16e-12 5_[-2(2.29e-09)]_3_[-1(1.49e-09)]_\ 48 chrXV:1028745-1029062 6.18e-01 100 chrVIII:505866-506145 6.79e-01 100 chrXII:639053-639281 9.57e-01 100 chrVI:223350-223726 2.24e-01 100 chrXV:445100-445844 2.91e-01 100 chrXVI:281294-281484 4.57e-01 100 chrIV:992681-992997 1.48e-01 100 chrX:73592-73692 7.18e-01 100 chrVII:534849-535191 9.22e-01 100 chrVII:328440-328835 5.81e-15 [-3(3.00e-13)]_11_[+2(1.76e-09)]_44 chrXVI:377102-377478 3.66e-01 100 chrIV:1401280-1401566 5.78e-01 100 chrVII:779452-779761 1.10e-06 64_[-3(5.52e-10)]_12 chrIV:1352382-1352665 4.16e-12 3_[-2(2.29e-09)]_3_[-1(1.49e-09)]_\ 50 chrXIV:331396-331772 3.49e-01 100 chrVIII:115992-116354 8.53e-08 18_[-1(1.69e-11)]_59 chrIV:222006-222279 8.45e-01 100 chrVII:845469-845826 5.34e-01 100 chrV:140519-140840 9.42e-01 100 chrXVI:860210-860553 5.34e-01 100 chrXI:517815-518128 1.44e-01 100 chrX:390939-391039 8.89e-05 14_[-1(8.49e-08)]_63 chrXVI:210105-210423 5.56e-10 20_[+3(3.00e-13)]_56 chrIV:1441481-1441857 1.41e-01 100 chrVIII:382971-383287 5.59e-01 100 chrXII:731978-732282 6.81e-05 25_[+1(2.29e-06)]_30_[+2(8.66e-05)]_\ 1 chrXV:79817-80086 9.87e-01 100 chrVI:162075-162368 4.22e-01 100 chrVII:561503-561655 8.48e-01 100 chrXIII:504723-505084 3.24e-03 57_[+1(5.22e-07)]_20 chrXIII:572741-573124 4.77e-09 11_[-2(2.33e-08)]_3_[-1(8.49e-08)]_\ 42 chrXIII:195983-196329 1.92e-01 100 chrXI:113710-114086 2.38e-01 100 chrVII:278307-278430 8.28e-01 100 chrIX:300145-300463 7.37e-06 8_[-1(1.49e-09)]_69 chrV:61236-61330 8.91e-01 94 chrV:152080-152456 5.91e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************