Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.032984 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.065625 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.075457 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.015809 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background Finished invoke: name: bg status: 0 time: 0.019664 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 509.493865 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 57.293741 Invoking: centrimo -seqlen 350 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.220153 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.569053 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -primary SSCYYTAMCMACTVGGCCAM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.394731 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -primary RRGRTCMBSGGTTCGAYYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.288928 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -primary GAMARSSKVAYRTGMTARCCRYTACACTAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.32698 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.265007 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -primary CCRTACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.251465 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -primary CABACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.282014 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -primary GTGATAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.290576 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.309354 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -primary CTCTHCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.343798 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -primary CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.340381 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -primary AGCKCGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.294166 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -primary TCAKAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.295127 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -primary TACCACTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.274907 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -primary AARAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.524929 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -primary ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.307588 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -primary CACGGTGM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.446825 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background -primary ATCSTTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.221127 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background --motif SSCYYTAMCMACTVGGCCAM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa Finished invoke: name: fimo1 status: 0 time: 0.172098 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background --motif RRGRTCMBSGGTTCGAYYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa Finished invoke: name: fimo2 status: 0 time: 0.172171 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background --motif GAMARSSKVAYRTGMTARCCRYTACACTAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa Finished invoke: name: fimo3 status: 0 time: 0.204845 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa Finished invoke: name: fimo4 status: 0 time: 0.138488 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background --motif CCRTACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa Finished invoke: name: fimo5 status: 0 time: 0.127992 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background --motif CABACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa Finished invoke: name: fimo6 status: 0 time: 0.082347 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background --motif GTGATAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa Finished invoke: name: fimo7 status: 0 time: 0.11625 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa Finished invoke: name: fimo8 status: 0 time: 0.082962 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background --motif CTCTHCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa Finished invoke: name: fimo9 status: 0 time: 0.334893 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background --motif CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa Finished invoke: name: fimo10 status: 0 time: 0.072394 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background --motif AGCKCGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa Finished invoke: name: fimo11 status: 0 time: 0.092734 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background --motif TCAKAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa Finished invoke: name: fimo12 status: 0 time: 0.108068 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background --motif TACCACTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa Finished invoke: name: fimo13 status: 0 time: 0.329916 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background --motif AARAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa Finished invoke: name: fimo14 status: 0 time: 0.12068 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background --motif ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa Finished invoke: name: fimo15 status: 0 time: 0.155517 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background --motif CACGGTGM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa Finished invoke: name: fimo16 status: 0 time: 0.155794 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/background --motif ATCSTTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/YJM789--HAA1.fa Finished invoke: name: fimo17 status: 0 time: 0.137277 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--HAA1/summary.tsv Finished invoke: name: summary status: 0 time: 0.31459 Done