******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--GAL11/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXV:1028599-1029091 1.0000 100 chrXI:46670-46971 1.0000 100 chrV:102208-102624 1.0000 100 chrXV:989078-989416 1.0000 100 chrII:392494-392781 1.0000 100 chrII:477062-477490 1.0000 100 chrVII:205343-205755 1.0000 100 chrVI:33554-33970 1.0000 100 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chrVII:483268-483776 1.0000 100 chrXV:80709-80866 1.0000 100 chrVII:95451-95635 1.0000 100 chrX:415832-415932 1.0000 100 chrIV:579072-579393 1.0000 100 chrXVI:744115-744484 1.0000 100 chrXVI:856876-857118 1.0000 100 chrII:375159-375575 1.0000 100 chrXIV:302904-303320 1.0000 100 chrXV:447720-448136 1.0000 100 chrXII:498519-498967 1.0000 100 chrII:606393-606809 1.0000 100 chrIV:1362227-1362643 1.0000 100 chrXV:391470-391886 1.0000 100 chrV:250239-250502 1.0000 100 chrXII:426926-427301 1.0000 100 chrII:88078-88506 1.0000 100 chrIV:234211-234695 1.0000 100 chrXII:84103-84354 1.0000 100 chrXI:68188-68516 1.0000 100 chrXV:40412-40635 1.0000 100 chrXI:431367-431620 1.0000 100 chrIII:178340-178671 1.0000 100 chrVII:366081-366497 1.0000 100 chrX:391895-391995 1.0000 100 chrX:123051-123151 1.0000 100 chrXV:167977-168430 1.0000 100 chrV:431025-431531 1.0000 100 chrVII:185589-185942 1.0000 100 chrXII:522181-522434 1.0000 100 chrV:140440-140877 1.0000 100 chrV:322030-322426 1.0000 100 chrXII:796405-796865 1.0000 100 chrIX:98935-99351 1.0000 100 chrVI:31968-32183 1.0000 100 chrXII:243138-243554 1.0000 100 chrXII:903292-903708 1.0000 100 chrXV:93752-93967 1.0000 100 chrXV:253823-254097 1.0000 100 chrXII:781448-781845 1.0000 100 chrIV:1359386-1359810 1.0000 100 chrXIII:837744-838114 1.0000 100 chrXIII:362915-363278 1.0000 100 chrIV:1352369-1352678 1.0000 100 chrXVI:242806-243077 1.0000 100 chrXII:875217-875613 1.0000 100 chrX:525890-525990 1.0000 100 chrVII:516244-516655 1.0000 100 chrIII:142596-142966 1.0000 100 chrVI:137324-137714 1.0000 100 chrV:311912-312269 1.0000 100 chrX:542847-542947 1.0000 100 chrIV:358112-358397 1.0000 100 chrV:86196-86807 1.0000 100 chrXI:578790-579255 1.0000 100 chrV:135262-135640 1.0000 100 chrXIV:253651-254067 1.0000 100 chrII:408598-409023 1.0000 100 chrXI:490783-491134 1.0000 100 chrXIV:63136-63526 1.0000 100 chrXVI:581885-582249 1.0000 100 chrXV:312526-312923 1.0000 100 chrXI:282878-283024 1.0000 100 chrII:350652-350964 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--GAL11/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--GAL11/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--GAL11/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 578 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 57800 N= 578 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.296 C 0.204 G 0.204 T 0.296 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--GAL11/background): A 0.307 C 0.193 G 0.193 T 0.307 ******************************************************************************** ******************************************************************************** MOTIF GGCSVRDTKGKTARSGCGYCWGACTNDWAA MEME-1 width = 30 sites = 86 llr = 1704 E-value = 7.7e-365 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCSVRDTKGKTARSGCGYCWGACTNDWAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::14631:::1a62::1124:7::33389 pos.-specific C :3853:1:1:11::3:a:462218:221:: probability G 771323424961:35a:9:1172::2312: matrix T 1::1:1274137::::::4141:2a326:1 bits 2.4 2.1 ** 1.9 *** 1.7 * * * *** * Relative 1.4 ** * * *** ** * Entropy 1.2 ** * * *** * ** ** (28.6 bits) 1.0 *** * * **** * ** ** 0.7 *** * ** ****** **** ** 0.5 ****** ************* **** ** 0.2 ******************** **** *** 0.0 ------------------------------ Multilevel GGCCAAGTGGGTAAGGCGTCAGACTAATAA consensus C GCGA T T GC CAT TGAG sequence G T CT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCSVRDTKGKTARSGCGYCWGACTNDWAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrIV:434111-434462 - 63 3.50e-15 GCTTCTAT GGCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrXV:113624-113979 + 59 3.50e-15 TAGCTTCTAT GGCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrXIV:104633-105069 + 12 3.50e-15 GAGCTTCTAT GGCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrVIII:115966-116398 - 10 3.50e-15 GAGCTTCTAT GGCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGAT chrXIV:560573-560841 - 71 3.50e-15 . GGCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrX:58986-59086 - 22 3.50e-15 AAGCTTCTAT GGCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrIII:295339-295658 + 44 3.50e-15 AAGCTTCTAT GGCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrII:266198-266619 + 28 3.50e-15 CTGCTTCTAT GGCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrIX:174931-175176 + 36 3.50e-15 GAGCTTCTAT GGCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrV:288276-288704 - 47 1.74e-13 TAGGCACTAT GGCCGAGTGGTTAAGGCGACAGACTTGAAA TCTGTTGGGC chrXVI:689395-689825 + 13 1.74e-13 TGGGCACTAT GGCCGAGTGGTTAAGGCGACAGACTTGAAA TCTGTTGGGC chrXVI:581885-582249 + 53 1.18e-12 GAGCCTTGTT GGCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrV:135262-135640 - 59 1.18e-12 AAGCCTTGTT GGCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrIV:1352369-1352678 - 28 1.18e-12 TAGCCTTGTT GGCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrVII:185589-185942 - 34 1.18e-12 TAGCCTTGTT GGCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrVII:122101-122492 + 31 1.18e-12 TAGCCTTGTT GGCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrVI:226537-226888 - 61 1.18e-12 ATGCCTTGTT GGCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrX:414800-414900 + 38 1.18e-12 TAGCCTTGTT GGCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrVII:876206-876596 + 51 1.18e-12 TAGCCTTGTT GGCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrIV:1201576-1201942 + 49 1.18e-12 TAGCCTTGTT GGCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrV:435649-435965 - 30 1.18e-12 GAGCCTTGTT GGCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrXII:167839-168205 - 16 2.17e-11 ATGGCAACTT GGCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrXIII:259055-259416 - 17 2.17e-11 ATGGCAACTT GGCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrVIII:132934-133295 - 6 2.17e-11 GTGGCAACTT GGCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTT chrII:226939-227297 + 15 2.17e-11 GAGGCAACTT GGCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrIV:437590-437946 + 62 2.17e-11 AAGGCAACTT GGCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGG chrV:311912-312269 - 18 8.58e-11 CTGGGCACAT GGCGCAGTTGGTAGCGCGCTTCCCTTGCAA GGAAGAGGTC chrXII:214751-215093 - 46 8.58e-11 TAGGGCACAT GGCGCAGTTGGTAGCGCGCTTCCCTTGCAA GGAAGAGGTC chrI:166133-166477 + 20 8.58e-11 TTGGGCACAT GGCGCAGTTGGTAGCGCGCTTCCCTTGCAA GGAAGAGGTC chrVII:794249-794587 + 57 8.58e-11 GCGGGCACAT GGCGCAGTTGGTAGCGCGCTTCCCTTGCAA GGAAGAGGTC chrVI:137324-137714 - 52 9.66e-11 TGACTCCATG GCCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrXI:74425-74804 + 69 9.66e-11 AGACTCCATG GCCAAGTTGGTTAAGGCGTGCGACTGTTAA TC chrXVI:810534-810846 + 45 9.66e-11 CGACTCCATG GCCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrIII:127537-127887 + 63 9.66e-11 TGACTCCATG GCCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGA chrXIV:102539-102941 + 35 9.66e-11 AGACTCCATG GCCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrXV:228146-228519 + 58 9.66e-11 AGACTCCATG GCCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrVII:730953-731353 + 43 9.66e-11 AGACTCCATG GCCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrXI:490783-491134 + 68 1.37e-10 TGTTCCTCGT GGCCCAATGGTCACGGCGTCTGGCTACGAA CCA chrXII:374182-374581 + 32 1.37e-10 TGTTCCTCGT GGCCCAATGGTCACGGCGTCTGGCTACGAA CCAGAAGATT chrX:233760-233860 + 68 1.37e-10 TGTTCCTCGT GGCCCAATGGTCACGGCGTCTGGCTACGAA CCA chrVII:440599-440996 - 23 2.67e-10 ATGCGGATTT AGCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrXIII:352097-352448 + 66 2.67e-10 AAGCGGATTT AGCTCAGTTGGGAGAGCGCCAGACTGAAGA AATAC chrXIV:374738-375029 + 44 2.67e-10 AAGCGGACTT AGCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAACTTCGG chrVIII:237718-238112 - 37 2.67e-10 AAGCGGATTT AGCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrVI:157848-158190 - 1 2.67e-10 AAGCGGATTT AGCTCAGTTGGGAGAGCGCCAGACTGAAGA chrXVI:622414-622825 - 25 2.67e-10 ATGCGGATTT AGCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrIV:1095232-1095629 - 44 2.67e-10 TAGCGGACTT AGCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTTG chrXII:734637-734981 + 52 6.88e-10 TGGTCTCTTG GCCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXIV:569784-570014 - 53 6.88e-10 TGGTCTCTTG GCCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXII:1051975-1052245 - 46 6.88e-10 TGGTCTCTTG GCCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXVI:880186-880561 - 8 6.88e-10 TGGTCTCTTG GCCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGG chrIX:183306-183689 - 28 6.88e-10 TGGTCTCTTG GCCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXVI:819335-819729 + 56 6.88e-10 TGGTCTCTTG GCCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrV:443106-443397 - 36 6.88e-10 TGGTCTCTTG GCCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXI:578790-579255 + 1 7.61e-10 . AGCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrXII:875217-875613 + 19 7.61e-10 CATCCTTGTT AGCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrII:347415-347776 + 67 2.19e-09 CGGAGGGTTG GCCGAGTGGTCTAAGGCGGCAGACTTAAGA TCTG chrXI:84025-84368 + 71 2.19e-09 TGGAGGGTTG GCCGAGTGGTCTAAGGCGGCAGACTTAAGA chrIV:519619-519889 + 48 2.19e-09 CGGAGGGTTG GCCGAGTGGTCTAAGGCGGCAGACTTAAGA TCTGTTGGAC chrXII:962885-963246 - 2 2.19e-09 CGGAGGGTTG GCCGAGTGGTCTAAGGCGGCAGACTTAAGA T chrV:138482-138935 + 15 2.63e-09 AATGCTCGCG TGGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrVII:736141-736556 + 49 2.63e-09 ATAGCTCGCG TGGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrXIII:747771-748146 - 19 2.63e-09 CTAGCTCGCG TGGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrX:374290-374390 - 65 2.63e-09 CTCGCG TGGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrIV:568706-569157 + 8 2.63e-09 GCTCGCG TGGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrXIII:131700-132077 - 22 2.63e-09 TTAGCTCGCG TGGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrVII:828528-828979 - 55 2.63e-09 GTAGCTCGCG TGGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrII:405682-406168 + 10 2.63e-09 TAGCTCGCG TGGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrXI:162319-162734 - 46 2.63e-09 TTAGCTCGCG TGGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrXII:628202-628615 + 34 3.44e-09 TGGTTGTTTG GCCGAGCGGTCTAAGGCGCCTGATTCAAGA AAATATCTTG chrXIII:504704-505108 + 48 3.44e-09 TGGTTGTTTG GCCGAGCGGTCTAAGGCGCCTGATTCAAGA AATATCTTGA chrVII:857259-857656 - 46 3.44e-09 TGGTTGTTTG GCCGAGCGGTCTAAGGCGCCTGATTCAAGA AATATCTTGA chrXIV:442834-443257 + 20 3.44e-09 TGGTTGTTTG GCCGAGCGGTCTAAGGCGCCTGATTCAAGA AATATCTTGA chrVI:191459-191774 - 10 3.44e-09 CTGTCCCAGT GGCCGAGTGGTTAAGGCGATGCCCTGCTAT TTCCTCAGA chrVII:205343-205755 + 31 3.44e-09 TGGTTGTTTG GCCGAGCGGTCTAAGGCGCCTGATTCAAGA AATATCTTGA chrX:390916-391016 - 16 1.54e-08 GTGCTTCAGT AGCTCAGTAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrXV:976342-976586 + 15 1.54e-08 GCGCTTCAGT AGCTCAGTAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrX:422747-422847 + 48 1.54e-08 ATGCTTCAGT AGCTCAGTAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrXII:592409-592759 - 47 3.03e-08 TGGGAGTTTG GCCGAGTGGTTTAAGGCGTCAGATTTAGGT GGATTTAACC chrX:617720-617820 + 63 3.03e-08 TGGGAGTTTG GCCGAGTGGTTTAAGGCGTCAGATTTAGGT GGATTTAA chrXV:710042-710364 + 55 3.50e-08 AGCAGCGCCG TGGCGCAGTGGAAGCGCGCAGGGCTCATAA CCCTGATGTC chrIII:149739-150113 + 51 3.50e-08 TTGAGCGCCG TGGCGCAGTGGAAGCGCGCAGGGCTCATAA CCCTGATGTC chrVII:774159-774560 + 48 8.58e-08 TTGGGCGTGT GGCGTAGTCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrXII:656817-657164 - 29 8.58e-08 TTGGGCGTGT GGCGTAGTCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrIV:341271-341611 + 38 1.82e-05 GGCCTACTTA GGACTGGGTGTTAAAATGTACGGATGGAAA AGTAGACTCG chrXIV:444468-444773 + 37 9.89e-05 AAAACAATAA TGTACGGATTTAAAGAGGTACGGATGGAGA CCGTAGAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCSVRDTKGKTARSGCGYCWGACTNDWAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:434111-434462 3.5e-15 62_[-1]_8 chrXV:113624-113979 3.5e-15 58_[+1]_12 chrXIV:104633-105069 3.5e-15 11_[+1]_59 chrVIII:115966-116398 3.5e-15 9_[-1]_61 chrXIV:560573-560841 3.5e-15 70_[-1] chrX:58986-59086 3.5e-15 21_[-1]_49 chrIII:295339-295658 3.5e-15 43_[+1]_27 chrII:266198-266619 3.5e-15 27_[+1]_43 chrIX:174931-175176 3.5e-15 35_[+1]_35 chrV:288276-288704 1.7e-13 46_[-1]_24 chrXVI:689395-689825 1.7e-13 12_[+1]_58 chrXVI:581885-582249 1.2e-12 52_[+1]_18 chrV:135262-135640 1.2e-12 58_[-1]_12 chrIV:1352369-1352678 1.2e-12 27_[-1]_43 chrVII:185589-185942 1.2e-12 33_[-1]_37 chrVII:122101-122492 1.2e-12 30_[+1]_40 chrVI:226537-226888 1.2e-12 60_[-1]_10 chrX:414800-414900 1.2e-12 37_[+1]_33 chrVII:876206-876596 1.2e-12 50_[+1]_20 chrIV:1201576-1201942 1.2e-12 48_[+1]_22 chrV:435649-435965 1.2e-12 29_[-1]_41 chrXII:167839-168205 2.2e-11 15_[-1]_55 chrXIII:259055-259416 2.2e-11 16_[-1]_54 chrVIII:132934-133295 2.2e-11 5_[-1]_65 chrII:226939-227297 2.2e-11 14_[+1]_56 chrIV:437590-437946 2.2e-11 61_[+1]_9 chrV:311912-312269 8.6e-11 17_[-1]_53 chrXII:214751-215093 8.6e-11 45_[-1]_25 chrI:166133-166477 8.6e-11 19_[+1]_51 chrVII:794249-794587 8.6e-11 56_[+1]_14 chrVI:137324-137714 9.7e-11 51_[-1]_19 chrXI:74425-74804 9.7e-11 68_[+1]_2 chrXVI:810534-810846 9.7e-11 44_[+1]_26 chrIII:127537-127887 9.7e-11 62_[+1]_8 chrXIV:102539-102941 9.7e-11 34_[+1]_36 chrXV:228146-228519 9.7e-11 57_[+1]_13 chrVII:730953-731353 9.7e-11 42_[+1]_28 chrXI:490783-491134 1.4e-10 67_[+1]_3 chrXII:374182-374581 1.4e-10 31_[+1]_39 chrX:233760-233860 1.4e-10 67_[+1]_3 chrVII:440599-440996 2.7e-10 22_[-1]_48 chrXIII:352097-352448 2.7e-10 65_[+1]_5 chrXIV:374738-375029 2.7e-10 43_[+1]_27 chrVIII:237718-238112 2.7e-10 36_[-1]_34 chrVI:157848-158190 2.7e-10 [-1]_70 chrXVI:622414-622825 2.7e-10 24_[-1]_46 chrIV:1095232-1095629 2.7e-10 43_[-1]_27 chrXII:734637-734981 6.9e-10 51_[+1]_19 chrXIV:569784-570014 6.9e-10 52_[-1]_18 chrXII:1051975-1052245 6.9e-10 45_[-1]_25 chrXVI:880186-880561 6.9e-10 7_[-1]_63 chrIX:183306-183689 6.9e-10 27_[-1]_43 chrXVI:819335-819729 6.9e-10 55_[+1]_15 chrV:443106-443397 6.9e-10 35_[-1]_35 chrXI:578790-579255 7.6e-10 [+1]_70 chrXII:875217-875613 7.6e-10 18_[+1]_52 chrII:347415-347776 2.2e-09 66_[+1]_4 chrXI:84025-84368 2.2e-09 70_[+1] chrIV:519619-519889 2.2e-09 47_[+1]_23 chrXII:962885-963246 2.2e-09 1_[-1]_69 chrV:138482-138935 2.6e-09 14_[+1]_56 chrVII:736141-736556 2.6e-09 48_[+1]_22 chrXIII:747771-748146 2.6e-09 18_[-1]_52 chrX:374290-374390 2.6e-09 64_[-1]_6 chrIV:568706-569157 2.6e-09 7_[+1]_63 chrXIII:131700-132077 2.6e-09 21_[-1]_49 chrVII:828528-828979 2.6e-09 54_[-1]_16 chrII:405682-406168 2.6e-09 9_[+1]_61 chrXI:162319-162734 2.6e-09 45_[-1]_25 chrXII:628202-628615 3.4e-09 33_[+1]_37 chrXIII:504704-505108 3.4e-09 47_[+1]_23 chrVII:857259-857656 3.4e-09 45_[-1]_25 chrXIV:442834-443257 3.4e-09 19_[+1]_51 chrVI:191459-191774 3.4e-09 9_[-1]_61 chrVII:205343-205755 3.4e-09 30_[+1]_40 chrX:390916-391016 1.5e-08 15_[-1]_55 chrXV:976342-976586 1.5e-08 14_[+1]_56 chrX:422747-422847 1.5e-08 47_[+1]_23 chrXII:592409-592759 3e-08 46_[-1]_24 chrX:617720-617820 3e-08 62_[+1]_8 chrXV:710042-710364 3.5e-08 54_[+1]_16 chrIII:149739-150113 3.5e-08 50_[+1]_20 chrVII:774159-774560 8.6e-08 47_[+1]_23 chrXII:656817-657164 8.6e-08 28_[-1]_42 chrIV:341271-341611 1.8e-05 37_[+1]_33 chrXIV:444468-444773 9.9e-05 36_[+1]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCSVRDTKGKTARSGCGYCWGACTNDWAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCSVRDTKGKTARSGCGYCWGACTNDWAA width=30 seqs=86 chrIV:434111-434462 ( 63) GGCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrXV:113624-113979 ( 59) GGCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrXIV:104633-105069 ( 12) GGCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrVIII:115966-116398 ( 10) GGCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrXIV:560573-560841 ( 71) GGCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrX:58986-59086 ( 22) GGCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrIII:295339-295658 ( 44) GGCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrII:266198-266619 ( 28) GGCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrIX:174931-175176 ( 36) GGCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrV:288276-288704 ( 47) GGCCGAGTGGTTAAGGCGACAGACTTGAAA 1 chrXVI:689395-689825 ( 13) GGCCGAGTGGTTAAGGCGACAGACTTGAAA 1 chrXVI:581885-582249 ( 53) GGCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrV:135262-135640 ( 59) GGCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrIV:1352369-1352678 ( 28) GGCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrVII:185589-185942 ( 34) GGCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrVII:122101-122492 ( 31) GGCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrVI:226537-226888 ( 61) GGCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrX:414800-414900 ( 38) GGCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrVII:876206-876596 ( 51) GGCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrIV:1201576-1201942 ( 49) GGCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrV:435649-435965 ( 30) GGCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrXII:167839-168205 ( 16) GGCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrXIII:259055-259416 ( 17) GGCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrVIII:132934-133295 ( 6) GGCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrII:226939-227297 ( 15) GGCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrIV:437590-437946 ( 62) GGCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrV:311912-312269 ( 18) GGCGCAGTTGGTAGCGCGCTTCCCTTGCAA 1 chrXII:214751-215093 ( 46) GGCGCAGTTGGTAGCGCGCTTCCCTTGCAA 1 chrI:166133-166477 ( 20) GGCGCAGTTGGTAGCGCGCTTCCCTTGCAA 1 chrVII:794249-794587 ( 57) GGCGCAGTTGGTAGCGCGCTTCCCTTGCAA 1 chrVI:137324-137714 ( 52) GCCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrXI:74425-74804 ( 69) GCCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrXVI:810534-810846 ( 45) GCCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrIII:127537-127887 ( 63) GCCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrXIV:102539-102941 ( 35) GCCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrXV:228146-228519 ( 58) GCCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrVII:730953-731353 ( 43) GCCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrXI:490783-491134 ( 68) GGCCCAATGGTCACGGCGTCTGGCTACGAA 1 chrXII:374182-374581 ( 32) GGCCCAATGGTCACGGCGTCTGGCTACGAA 1 chrX:233760-233860 ( 68) GGCCCAATGGTCACGGCGTCTGGCTACGAA 1 chrVII:440599-440996 ( 23) AGCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrXIII:352097-352448 ( 66) AGCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrXIV:374738-375029 ( 44) AGCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrVIII:237718-238112 ( 37) AGCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrVI:157848-158190 ( 1) AGCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrXVI:622414-622825 ( 25) AGCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrIV:1095232-1095629 ( 44) AGCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrXII:734637-734981 ( 52) GCCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrXIV:569784-570014 ( 53) GCCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrXII:1051975-1052245 ( 46) GCCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrXVI:880186-880561 ( 8) GCCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrIX:183306-183689 ( 28) GCCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrXVI:819335-819729 ( 56) GCCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrV:443106-443397 ( 36) GCCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrXI:578790-579255 ( 1) AGCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrXII:875217-875613 ( 19) AGCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrII:347415-347776 ( 67) GCCGAGTGGTCTAAGGCGGCAGACTTAAGA 1 chrXI:84025-84368 ( 71) GCCGAGTGGTCTAAGGCGGCAGACTTAAGA 1 chrIV:519619-519889 ( 48) GCCGAGTGGTCTAAGGCGGCAGACTTAAGA 1 chrXII:962885-963246 ( 2) GCCGAGTGGTCTAAGGCGGCAGACTTAAGA 1 chrV:138482-138935 ( 15) TGGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrVII:736141-736556 ( 49) TGGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrXIII:747771-748146 ( 19) TGGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrX:374290-374390 ( 65) TGGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrIV:568706-569157 ( 8) TGGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrXIII:131700-132077 ( 22) TGGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrVII:828528-828979 ( 55) TGGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrII:405682-406168 ( 10) TGGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrXI:162319-162734 ( 46) TGGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrXII:628202-628615 ( 34) GCCGAGCGGTCTAAGGCGCCTGATTCAAGA 1 chrXIII:504704-505108 ( 48) GCCGAGCGGTCTAAGGCGCCTGATTCAAGA 1 chrVII:857259-857656 ( 46) GCCGAGCGGTCTAAGGCGCCTGATTCAAGA 1 chrXIV:442834-443257 ( 20) GCCGAGCGGTCTAAGGCGCCTGATTCAAGA 1 chrVI:191459-191774 ( 10) GGCCGAGTGGTTAAGGCGATGCCCTGCTAT 1 chrVII:205343-205755 ( 31) GCCGAGCGGTCTAAGGCGCCTGATTCAAGA 1 chrX:390916-391016 ( 16) AGCTCAGTAGGAAGAGCGTCAGTCTCATAA 1 chrXV:976342-976586 ( 15) AGCTCAGTAGGAAGAGCGTCAGTCTCATAA 1 chrX:422747-422847 ( 48) AGCTCAGTAGGAAGAGCGTCAGTCTCATAA 1 chrXII:592409-592759 ( 47) GCCGAGTGGTTTAAGGCGTCAGATTTAGGT 1 chrX:617720-617820 ( 63) GCCGAGTGGTTTAAGGCGTCAGATTTAGGT 1 chrXV:710042-710364 ( 55) TGGCGCAGTGGAAGCGCGCAGGGCTCATAA 1 chrIII:149739-150113 ( 51) TGGCGCAGTGGAAGCGCGCAGGGCTCATAA 1 chrVII:774159-774560 ( 48) GGCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 chrXII:656817-657164 ( 29) GGCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 chrIV:341271-341611 ( 38) GGACTGGGTGTTAAAATGTACGGATGGAAA 1 chrXIV:444468-444773 ( 37) TGTACGGATTTAAAGAGGTACGGATGGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCSVRDTKGKTARSGCGYCWGACTNDWAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 41038 bayes= 6.40203 E= 7.7e-365 -114 -1307 190 -114 -1307 59 188 -1307 -472 214 -59 -472 -172 124 71 -114 36 86 20 -314 86 -305 71 -155 -14 -173 116 -40 -140 -1307 -24 123 -314 -46 112 40 -1307 -1307 216 -114 -1307 -88 154 13 -214 -46 -124 121 170 -1307 -1307 -1307 100 -246 86 -1307 -102 71 147 -1307 -372 -1307 234 -1307 -1307 234 -405 -472 -192 -1307 225 -1307 -172 112 -205 52 -48 162 -124 -155 28 -35 -73 23 -1307 -5 193 -192 118 -124 -5 -314 -372 208 -1307 -92 -1307 -1307 -1307 170 -2 27 4 -20 18 -35 54 -48 -8 -146 -173 92 134 -1307 20 -1307 161 -1307 -1307 -240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCSVRDTKGKTARSGCGYCWGACTNDWAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 86 E= 7.7e-365 0.139535 0.000000 0.720930 0.139535 0.000000 0.290698 0.709302 0.000000 0.011628 0.848837 0.127907 0.011628 0.093023 0.453488 0.313953 0.139535 0.395349 0.348837 0.220930 0.034884 0.558140 0.023256 0.313953 0.104651 0.279070 0.058140 0.430233 0.232558 0.116279 0.000000 0.162791 0.720930 0.034884 0.139535 0.418605 0.406977 0.000000 0.000000 0.860465 0.139535 0.000000 0.104651 0.558140 0.337209 0.069767 0.139535 0.081395 0.709302 1.000000 0.000000 0.000000 0.000000 0.616279 0.034884 0.348837 0.000000 0.151163 0.313953 0.534884 0.000000 0.023256 0.000000 0.976744 0.000000 0.000000 0.976744 0.011628 0.011628 0.081395 0.000000 0.918605 0.000000 0.093023 0.418605 0.046512 0.441860 0.220930 0.593023 0.081395 0.104651 0.372093 0.151163 0.116279 0.360465 0.000000 0.186047 0.732558 0.081395 0.697674 0.081395 0.186047 0.034884 0.023256 0.813953 0.000000 0.162791 0.000000 0.000000 0.000000 1.000000 0.302326 0.232558 0.197674 0.267442 0.348837 0.151163 0.279070 0.220930 0.290698 0.069767 0.058140 0.581395 0.779070 0.000000 0.220930 0.000000 0.941860 0.000000 0.000000 0.058140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCSVRDTKGKTARSGCGYCWGACTNDWAA MEME-1 regular expression -------------------------------------------------------------------------------- G[GC]C[CG][ACG][AG][GAT]T[GT]G[GT]TA[AG][GC]GCG[TC][CA][AT]GACT[ATC][AGT][TA][AG]A -------------------------------------------------------------------------------- Time 326.30 secs. ******************************************************************************** ******************************************************************************** MOTIF AGRTCMBSGGTTCGAYYCCSV MEME-2 width = 21 sites = 77 llr = 1355 E-value = 1.7e-261 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGRTCMBSGGTTCGAYYCCSV MEME-2 Description -------------------------------------------------------------------------------- Simplified A 6253:4::2::::3a2:::13 pos.-specific C :1:17433::::a::35a753 probability G 375::1358a:::7:2:::44 matrix T :1:73:31::aa:::45:3:: bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 **** * * Relative 1.4 * ******* * Entropy 1.2 * * ******* ** (25.4 bits) 1.0 ** * ******* **** 0.7 ***** ******** **** 0.5 *************** ***** 0.2 *************** ***** 0.0 --------------------- Multilevel AGGTCATGGGTTCGATTCCCG consensus G AATCCC A CC TGC sequence G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCMBSGGTTCGAYYCCSV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:631749-632040 - 11 2.35e-12 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCG GCTCGCCCCC chrXII:214751-215093 - 20 5.76e-11 TGCAAGGAAG AGGTCATCGGTTCGATTCCGG TTGCGTCCAT chrI:166133-166477 + 55 5.76e-11 TGCAAGGAAG AGGTCATCGGTTCGATTCCGG TTGCGTCCAA chrXIV:569784-570014 - 27 6.95e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXII:1051975-1052245 - 20 6.95e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrIV:667897-668122 - 57 6.95e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrIX:183306-183689 - 2 6.95e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC T chrV:443106-443397 - 10 6.95e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCA chrV:135262-135640 - 33 8.48e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrIV:1352369-1352678 - 2 8.48e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC T chrVII:185589-185942 - 8 8.48e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGG chrVII:122101-122492 + 66 8.48e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrVI:226537-226888 - 35 8.48e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrX:414800-414900 + 73 8.48e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGG chrV:435649-435965 - 4 8.48e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TAC chrV:487230-487548 - 1 3.19e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC chrVII:328400-328863 + 44 3.19e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrXI:140866-141271 - 9 3.19e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGA chrIV:1017035-1017470 - 14 3.19e-10 TCTCACCGTG GAGACCGGGGTTCGACTCCCC GCTTCGGAGT chrVII:541677-542124 + 42 3.19e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrVII:328400-328878 + 36 3.19e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:176919-177360 + 52 3.19e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:138482-138935 + 50 4.36e-10 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGT chrVII:405408-405711 + 3 4.36e-10 GA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrX:374290-374390 - 39 4.36e-10 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrIV:568706-569157 + 43 4.36e-10 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrX:531653-531753 + 39 4.36e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrX:355189-355289 + 23 4.36e-10 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrVIII:475584-475944 - 1 4.36e-10 CACACGGCAA AGGTCCCGAGTTCGATCCTCG chrVII:828528-828979 - 29 4.36e-10 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrXIV:96068-96473 - 30 4.36e-10 TTCCAAGGTG GGGACACGGGTTCGATTCTCG TACCGCTCAA chrII:405682-406168 + 45 4.36e-10 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrXV:110819-111137 - 43 4.36e-10 TTCCAAGGTG GGGACACGGGTTCGATTCTCG TACCGCTCAT chrV:61682-62115 - 51 4.36e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrXI:162319-162734 - 20 4.36e-10 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGT chrVI:180755-181207 - 52 4.36e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrXI:578790-579255 + 59 7.62e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXII:875217-875613 + 77 7.62e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TAT chrXV:438467-438947 + 52 7.62e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXV:980553-980904 + 80 2.08e-09 AGCATGCGAG AGGCCCTGGGTTCAATTCCCA chrXIV:567982-568342 + 76 2.08e-09 AGCATGCGAG AGGCCCTGGGTTCAATTCCCA GCTC chrIV:488538-489035 - 70 2.95e-09 TACACGGCGA AGATCCCGAGTTCGAACCTCG GTTGGATCAG chrXII:656817-657164 - 3 3.69e-09 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG AC chrV:250239-250502 + 8 5.63e-09 GATCCGG ACAACCCCGGTTCGAATCCGG GTAGGACCTT chrIV:802613-802880 - 44 5.63e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAGGACCTC chrXII:448440-448899 - 40 5.63e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAGGACCTT chrVIII:134144-134528 + 77 5.63e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTA chrIV:434111-434462 - 37 6.24e-09 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrXIV:104633-105069 + 47 6.24e-09 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrXIV:560573-560841 - 45 6.24e-09 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrIII:295339-295658 + 79 6.24e-09 AGTAATGTGG AGATCATCGGTTCAAATCCGA T chrII:266198-266619 + 63 6.24e-09 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrIX:174931-175176 + 71 6.24e-09 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCA chrVII:823312-823687 + 77 9.23e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCG chrVII:412145-412546 - 8 9.23e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAAT chrXIII:372337-372656 - 8 9.23e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAAT chrXV:663663-664066 - 7 9.23e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAA chrXII:818468-818783 + 76 1.11e-08 TCCGGTGGCT GTGATCCGGGTTCGAGTCCCG GGAG chrVI:137324-137714 - 26 2.64e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXVI:810534-810846 + 80 2.64e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA chrXII:975848-976125 - 56 2.64e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXIV:102539-102941 + 70 2.64e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrVII:730953-731353 + 78 2.64e-08 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CT chrX:204558-204658 + 59 6.43e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrX:541392-541492 + 59 6.43e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXV:976342-976586 + 50 7.85e-08 CATAATCTGA AGGTCGAGAGTTCGAACCTCC CCTGGAGCAA chrXVI:744115-744484 + 77 1.29e-07 TGTAATGCAA AGGTCGTTAGTTCAATTCTGA CAG chrVII:1004058-1004412 + 73 1.29e-07 TGTAATGCAA AGGTCGTTAGTTCAATTCTGA CAGGTGG chrXIII:168680-169028 + 50 1.45e-07 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrXIII:362915-363278 + 60 1.71e-07 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG GAGATGGCAT chrXI:313300-313617 - 2 1.71e-07 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG G chrVII:319718-319959 + 35 1.71e-07 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG GAGATGGCAT chrVII:110413-110825 - 65 1.71e-07 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG GAGATGGCAA chrXII:374182-374581 + 67 1.81e-07 ACGAACCAGA AGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrVII:878484-878996 - 29 2.01e-07 TGCAATCGAA GGGTTGCAGGTTCAATTCCTG TCCGTTTCAT chrXVI:56010-56384 - 31 2.01e-07 TGCAATCGAA GGGTTGCAGGTTCAATTCCTG TCCGTTTCAA chrXVI:775640-776004 - 2 2.12e-07 GCAAATCTGT TGGTCCTTAGTTCGATCCTGA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCMBSGGTTCGAYYCCSV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631749-632040 2.4e-12 10_[-2]_69 chrXII:214751-215093 5.8e-11 19_[-2]_60 chrI:166133-166477 5.8e-11 54_[+2]_25 chrXIV:569784-570014 7e-11 26_[-2]_53 chrXII:1051975-1052245 7e-11 19_[-2]_60 chrIV:667897-668122 7e-11 56_[-2]_23 chrIX:183306-183689 7e-11 1_[-2]_78 chrV:443106-443397 7e-11 9_[-2]_70 chrV:135262-135640 8.5e-11 32_[-2]_47 chrIV:1352369-1352678 8.5e-11 1_[-2]_78 chrVII:185589-185942 8.5e-11 7_[-2]_72 chrVII:122101-122492 8.5e-11 65_[+2]_14 chrVI:226537-226888 8.5e-11 34_[-2]_45 chrX:414800-414900 8.5e-11 72_[+2]_7 chrV:435649-435965 8.5e-11 3_[-2]_76 chrV:487230-487548 3.2e-10 [-2]_79 chrVII:328400-328863 3.2e-10 43_[+2]_36 chrXI:140866-141271 3.2e-10 8_[-2]_71 chrIV:1017035-1017470 3.2e-10 13_[-2]_66 chrVII:541677-542124 3.2e-10 41_[+2]_38 chrVII:328400-328878 3.2e-10 35_[+2]_44 chrV:176919-177360 3.2e-10 51_[+2]_28 chrV:138482-138935 4.4e-10 49_[+2]_30 chrVII:405408-405711 4.4e-10 2_[+2]_77 chrX:374290-374390 4.4e-10 38_[-2]_41 chrIV:568706-569157 4.4e-10 42_[+2]_37 chrX:531653-531753 4.4e-10 38_[+2]_41 chrX:355189-355289 4.4e-10 22_[+2]_57 chrVIII:475584-475944 4.4e-10 [-2]_79 chrVII:828528-828979 4.4e-10 28_[-2]_51 chrXIV:96068-96473 4.4e-10 29_[-2]_50 chrII:405682-406168 4.4e-10 44_[+2]_35 chrXV:110819-111137 4.4e-10 42_[-2]_37 chrV:61682-62115 4.4e-10 50_[-2]_29 chrXI:162319-162734 4.4e-10 19_[-2]_60 chrVI:180755-181207 4.4e-10 51_[-2]_28 chrXI:578790-579255 7.6e-10 58_[+2]_21 chrXII:875217-875613 7.6e-10 76_[+2]_3 chrXV:438467-438947 7.6e-10 51_[+2]_28 chrXV:980553-980904 2.1e-09 79_[+2] chrXIV:567982-568342 2.1e-09 75_[+2]_4 chrIV:488538-489035 2.9e-09 69_[-2]_10 chrXII:656817-657164 3.7e-09 2_[-2]_77 chrV:250239-250502 5.6e-09 7_[+2]_72 chrIV:802613-802880 5.6e-09 43_[-2]_36 chrXII:448440-448899 5.6e-09 39_[-2]_40 chrVIII:134144-134528 5.6e-09 76_[+2]_3 chrIV:434111-434462 6.2e-09 36_[-2]_43 chrXIV:104633-105069 6.2e-09 46_[+2]_33 chrXIV:560573-560841 6.2e-09 44_[-2]_35 chrIII:295339-295658 6.2e-09 78_[+2]_1 chrII:266198-266619 6.2e-09 62_[+2]_17 chrIX:174931-175176 6.2e-09 70_[+2]_9 chrVII:823312-823687 9.2e-09 76_[+2]_3 chrVII:412145-412546 9.2e-09 7_[-2]_72 chrXIII:372337-372656 9.2e-09 7_[-2]_72 chrXV:663663-664066 9.2e-09 6_[-2]_73 chrXII:818468-818783 1.1e-08 75_[+2]_4 chrVI:137324-137714 2.6e-08 25_[-2]_54 chrXVI:810534-810846 2.6e-08 79_[+2] chrXII:975848-976125 2.6e-08 55_[-2]_24 chrXIV:102539-102941 2.6e-08 69_[+2]_10 chrVII:730953-731353 2.6e-08 77_[+2]_2 chrX:204558-204658 6.4e-08 58_[+2]_21 chrX:541392-541492 6.4e-08 58_[+2]_21 chrXV:976342-976586 7.9e-08 49_[+2]_30 chrXVI:744115-744484 1.3e-07 76_[+2]_3 chrVII:1004058-1004412 1.3e-07 72_[+2]_7 chrXIII:168680-169028 1.4e-07 49_[+2]_30 chrXIII:362915-363278 1.7e-07 59_[+2]_20 chrXI:313300-313617 1.7e-07 1_[-2]_78 chrVII:319718-319959 1.7e-07 34_[+2]_45 chrVII:110413-110825 1.7e-07 64_[-2]_15 chrXII:374182-374581 1.8e-07 66_[+2]_13 chrVII:878484-878996 2e-07 28_[-2]_51 chrXVI:56010-56384 2e-07 30_[-2]_49 chrXVI:775640-776004 2.1e-07 1_[-2]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCMBSGGTTCGAYYCCSV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGRTCMBSGGTTCGAYYCCSV width=21 seqs=77 chrXIV:631749-632040 ( 11) AGGTCCCGGGTTCGAGTCCCG 1 chrXII:214751-215093 ( 20) AGGTCATCGGTTCGATTCCGG 1 chrI:166133-166477 ( 55) AGGTCATCGGTTCGATTCCGG 1 chrXIV:569784-570014 ( 27) GGATCAGCGGTTCGATCCCGC 1 chrXII:1051975-1052245 ( 20) GGATCAGCGGTTCGATCCCGC 1 chrIV:667897-668122 ( 57) GGATCAGCGGTTCGATCCCGC 1 chrIX:183306-183689 ( 2) GGATCAGCGGTTCGATCCCGC 1 chrV:443106-443397 ( 10) GGATCAGCGGTTCGATCCCGC 1 chrV:135262-135640 ( 33) AGGTTAGGGGTTCGAGCCCCC 1 chrIV:1352369-1352678 ( 2) AGGTTAGGGGTTCGAGCCCCC 1 chrVII:185589-185942 ( 8) AGGTTAGGGGTTCGAGCCCCC 1 chrVII:122101-122492 ( 66) AGGTTAGGGGTTCGAGCCCCC 1 chrVI:226537-226888 ( 35) AGGTTAGGGGTTCGAGCCCCC 1 chrX:414800-414900 ( 73) AGGTTAGGGGTTCGAGCCCCC 1 chrV:435649-435965 ( 4) AGGTTAGGGGTTCGAGCCCCC 1 chrV:487230-487548 ( 1) GAGACCGGGGTTCGACTCCCC 1 chrVII:328400-328863 ( 44) GAGACCGGGGTTCGACTCCCC 1 chrXI:140866-141271 ( 9) GAGACCGGGGTTCGACTCCCC 1 chrIV:1017035-1017470 ( 14) GAGACCGGGGTTCGACTCCCC 1 chrVII:541677-542124 ( 42) GAGACCGGGGTTCGACTCCCC 1 chrVII:328400-328878 ( 36) GAGACCGGGGTTCGACTCCCC 1 chrV:176919-177360 ( 52) GAGACCGGGGTTCGACTCCCC 1 chrV:138482-138935 ( 50) AGATTATGGGTTCGACCCCCA 1 chrVII:405408-405711 ( 3) AGATTATGGGTTCGACCCCCA 1 chrX:374290-374390 ( 39) AGATTATGGGTTCGACCCCCA 1 chrIV:568706-569157 ( 43) AGATTATGGGTTCGACCCCCA 1 chrX:531653-531753 ( 39) GGGCCCCCGGTTCGATTCCGG 1 chrX:355189-355289 ( 23) AGATTATGGGTTCGACCCCCA 1 chrVIII:475584-475944 ( 1) AGGTCCCGAGTTCGATCCTCG 1 chrVII:828528-828979 ( 29) AGATTATGGGTTCGACCCCCA 1 chrXIV:96068-96473 ( 30) GGGACACGGGTTCGATTCTCG 1 chrII:405682-406168 ( 45) AGATTATGGGTTCGACCCCCA 1 chrXV:110819-111137 ( 43) GGGACACGGGTTCGATTCTCG 1 chrV:61682-62115 ( 51) GGGCCCCCGGTTCGATTCCGG 1 chrXI:162319-162734 ( 20) AGATTATGGGTTCGACCCCCA 1 chrVI:180755-181207 ( 52) GGGCCCCCGGTTCGATTCCGG 1 chrXI:578790-579255 ( 59) ATGTCAGGGGTTCGAGCCCCC 1 chrXII:875217-875613 ( 77) ATGTCAGGGGTTCGAGCCCCC 1 chrXV:438467-438947 ( 52) ATGTCAGGGGTTCGAGCCCCC 1 chrXV:980553-980904 ( 80) AGGCCCTGGGTTCAATTCCCA 1 chrXIV:567982-568342 ( 76) AGGCCCTGGGTTCAATTCCCA 1 chrIV:488538-489035 ( 70) AGATCCCGAGTTCGAACCTCG 1 chrXII:656817-657164 ( 3) AGGTCTCCGGTTCGATTCCGG 1 chrV:250239-250502 ( 8) ACAACCCCGGTTCGAATCCGG 1 chrIV:802613-802880 ( 44) ACAACCCCGGTTCGAATCCGG 1 chrXII:448440-448899 ( 40) ACAACCCCGGTTCGAATCCGG 1 chrVIII:134144-134528 ( 77) ACAACCCCGGTTCGAATCCGG 1 chrIV:434111-434462 ( 37) AGATCATCGGTTCAAATCCGA 1 chrXIV:104633-105069 ( 47) AGATCATCGGTTCAAATCCGA 1 chrXIV:560573-560841 ( 45) AGATCATCGGTTCAAATCCGA 1 chrIII:295339-295658 ( 79) AGATCATCGGTTCAAATCCGA 1 chrII:266198-266619 ( 63) AGATCATCGGTTCAAATCCGA 1 chrIX:174931-175176 ( 71) AGATCATCGGTTCAAATCCGA 1 chrVII:823312-823687 ( 77) ACGTCCCCAGTTCGATCCTGG 1 chrVII:412145-412546 ( 8) ACGTCCCCAGTTCGATCCTGG 1 chrXIII:372337-372656 ( 8) ACGTCCCCAGTTCGATCCTGG 1 chrXV:663663-664066 ( 7) ACGTCCCCAGTTCGATCCTGG 1 chrXII:818468-818783 ( 76) GTGATCCGGGTTCGAGTCCCG 1 chrVI:137324-137714 ( 26) AGATCGTGAGTTCAACCCTCA 1 chrXVI:810534-810846 ( 80) AGATCGTGAGTTCAACCCTCA 1 chrXII:975848-976125 ( 56) AGATCGTGAGTTCAACCCTCA 1 chrXIV:102539-102941 ( 70) AGATCGTGAGTTCAACCCTCA 1 chrVII:730953-731353 ( 78) AGATCGTGAGTTCAACCCTCA 1 chrX:204558-204658 ( 59) CAGATCGGGGTTCAATTCCCC 1 chrX:541392-541492 ( 59) CAGATCGGGGTTCAATTCCCC 1 chrXV:976342-976586 ( 50) AGGTCGAGAGTTCGAACCTCC 1 chrXVI:744115-744484 ( 77) AGGTCGTTAGTTCAATTCTGA 1 chrVII:1004058-1004412 ( 73) AGGTCGTTAGTTCAATTCTGA 1 chrXIII:168680-169028 ( 50) AGATCGGGCGTTCGACTCGCC 1 chrXIII:362915-363278 ( 60) GAAACCCTGGTTCGATTCTAG 1 chrXI:313300-313617 ( 2) GAAACCCTGGTTCGATTCTAG 1 chrVII:319718-319959 ( 35) GAAACCCTGGTTCGATTCTAG 1 chrVII:110413-110825 ( 65) GAAACCCTGGTTCGATTCTAG 1 chrXII:374182-374581 ( 67) AGATTCCAGGTTCAAGTCCTG 1 chrVII:878484-878996 ( 29) GGGTTGCAGGTTCAATTCCTG 1 chrXVI:56010-56384 ( 31) GGGTTGCAGGTTCAATTCCTG 1 chrXVI:775640-776004 ( 2) TGGTCCTTAGTTCGATCCTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCMBSGGTTCGAYYCCSV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 46240 bayes= 11.4089 E= 1.7e-261 108 -289 70 -456 -86 -89 181 -256 56 -1291 150 -1291 -24 -157 -1291 113 -1291 192 -1291 -17 48 111 -43 -456 -456 75 75 13 -298 75 150 -176 -66 -389 204 -1291 -1291 -1291 238 -1291 -1291 -1291 -1291 170 -1291 -1291 -1291 170 -1291 238 -1291 -1291 -24 -1291 194 -1291 170 -1291 -1291 -1291 -98 50 -19 39 -1291 128 -1291 79 -1291 238 -1291 -1291 -1291 189 -389 -17 -256 150 92 -298 2 81 87 -1291 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCMBSGGTTCGAYYCCSV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 77 E= 1.7e-261 0.649351 0.025974 0.311688 0.012987 0.168831 0.103896 0.675325 0.051948 0.454545 0.000000 0.545455 0.000000 0.259740 0.064935 0.000000 0.675325 0.000000 0.727273 0.000000 0.272727 0.428571 0.415584 0.142857 0.012987 0.012987 0.324675 0.324675 0.337662 0.038961 0.324675 0.545455 0.090909 0.194805 0.012987 0.792208 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.259740 0.000000 0.740260 0.000000 1.000000 0.000000 0.000000 0.000000 0.155844 0.272727 0.168831 0.402597 0.000000 0.467532 0.000000 0.532468 0.000000 1.000000 0.000000 0.000000 0.000000 0.714286 0.012987 0.272727 0.051948 0.545455 0.363636 0.038961 0.311688 0.337662 0.350649 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCMBSGGTTCGAYYCCSV MEME-2 regular expression -------------------------------------------------------------------------------- [AG]G[GA][TA][CT][AC][TCG][GC]GGTTC[GA]A[TC][TC]C[CT][CG][GCA] -------------------------------------------------------------------------------- Time 728.35 secs. ******************************************************************************** ******************************************************************************** MOTIF GAAARSSKVAYRTGATARCCRYTACACTA MEME-3 width = 29 sites = 32 llr = 873 E-value = 9.5e-190 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAAARSSKVAYRTGATARCCRYTACACTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :86a6:::3723::8:85::5::a3a::a pos.-specific C 2:3::641333:::3:::aa:3::8:a:: probability G 812:44645117:8::35::5:::::::: matrix T :1:::::5::4:a3:a:::::7a::::a: bits 2.4 ** * 2.1 ** * 1.9 ** * 1.7 * * * * ** ** **** Relative 1.4 * * ** ** * ** ******* Entropy 1.2 * * ** *** * ** ******* (39.3 bits) 1.0 ** **** ****************** 0.7 ********** ****************** 0.5 ********** ****************** 0.2 ***************************** 0.0 ----------------------------- Multilevel GAAAACGTGATGTGATAACCATTACACTA consensus C GGCGACCA TC GG GC A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAARSSKVAYRTGATARCCRYTACACTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrX:115811-115911 + 24 4.88e-17 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTA TATCGGATTA chrXIII:290624-290980 - 56 4.88e-17 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTA TATCGGATTA chrXVI:210064-210449 + 22 4.88e-17 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTA TATCGGACAA chrV:487230-487548 + 28 4.88e-17 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTA TATCGGATTA chrVII:328400-328863 - 9 4.88e-17 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTA TATCGGAC chrII:644988-645352 - 54 4.88e-17 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTA TATCGGATAA chrIX:370234-370596 - 59 4.88e-17 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTA TATCGGATTA chrXI:140866-141271 + 36 4.88e-17 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTA TATCGGATTA chrVII:541677-542124 - 7 4.88e-17 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTA TATCGG chrVII:328400-328878 - 1 4.88e-17 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTA chrV:176919-177360 - 17 4.88e-17 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTA TATCGGATCA chrIV:1017035-1017470 + 41 2.43e-15 TCTCCACGGT GAGAACGTGATGTGATAGCCGTTACACTA CATCGGATTG chrIX:197415-197767 - 58 2.43e-15 TCTCCACGGT GAGAACGTGATGTGATAGCCGTTACACTA CATCGGATTT chrIV:802613-802880 + 71 4.57e-13 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTA T chrV:130982-131336 + 9 4.57e-13 GTTCGGAT CAAAACCGAAAGTGATAACCACTACACTA TAAAACCTCT chrXII:448440-448899 + 67 4.57e-13 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTA TAGGA chrIV:520799-521126 - 67 4.57e-13 CGGAT CAAAACCGAAAGTGATAACCACTACACTA TAGGACCCTA chrVIII:134144-134528 - 42 4.57e-13 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTA TAGGACCGGA chrXIII:808131-808484 + 25 1.01e-12 TTGTTCGGAT CAGAACCGAAAGTGATAACCACTACACTA TAGGACCTTT chrVII:779436-779783 - 64 2.32e-12 CCCACCTT GGAAGGGTGGGATGATAACCACTACACTA ACCGCCCGGG chrXIV:96068-96473 + 57 2.32e-12 TCCCCACCTT GGAAGGGTGGGATGATAACCACTACACTA ACCGCCCATG chrXV:110819-111137 + 70 2.32e-12 TCCCCACCTT GGAAGGGTGGGATGATAACCACTACACTA AC chrIV:1075339-1075728 + 26 2.91e-12 CCTTTGCCGT GTGAAGGCAACGTGATAGCCGCTACACTA TTGGAACAAT chrVIII:475584-475944 + 29 2.91e-12 CCTTTGCCGT GTGAAGGCAACGTGATAGCCGCTACACTA TTGGAACAGA chrXI:513243-513551 + 21 5.04e-12 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTA TCACGGAACG chrXV:571779-572141 - 55 5.04e-12 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTA TCACGGATTT chrX:355189-355289 - 70 5.04e-12 GC GACAAGCGCCCATTCTGACCATTAAACTA TCACGGAAGA chrXIII:463395-463723 - 52 5.04e-12 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTA TCACGGACAA chrX:204558-204658 - 24 5.04e-12 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTA TCACGGATTT chrX:541392-541492 - 24 5.04e-12 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTA TCACGGATTT chrXII:793730-794085 - 68 5.04e-12 ACGC GACAAGCGCCCATTCTGACCATTAAACTA TCACGGATTA chrVII:544431-544856 + 20 5.04e-12 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTA TCACGGAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAARSSKVAYRTGATARCCRYTACACTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:115811-115911 4.9e-17 23_[+3]_48 chrXIII:290624-290980 4.9e-17 55_[-3]_16 chrXVI:210064-210449 4.9e-17 21_[+3]_50 chrV:487230-487548 4.9e-17 27_[+3]_44 chrVII:328400-328863 4.9e-17 8_[-3]_63 chrII:644988-645352 4.9e-17 53_[-3]_18 chrIX:370234-370596 4.9e-17 58_[-3]_13 chrXI:140866-141271 4.9e-17 35_[+3]_36 chrVII:541677-542124 4.9e-17 6_[-3]_65 chrVII:328400-328878 4.9e-17 [-3]_71 chrV:176919-177360 4.9e-17 16_[-3]_55 chrIV:1017035-1017470 2.4e-15 40_[+3]_31 chrIX:197415-197767 2.4e-15 57_[-3]_14 chrIV:802613-802880 4.6e-13 70_[+3]_1 chrV:130982-131336 4.6e-13 8_[+3]_63 chrXII:448440-448899 4.6e-13 66_[+3]_5 chrIV:520799-521126 4.6e-13 66_[-3]_5 chrVIII:134144-134528 4.6e-13 41_[-3]_30 chrXIII:808131-808484 1e-12 24_[+3]_47 chrVII:779436-779783 2.3e-12 63_[-3]_8 chrXIV:96068-96473 2.3e-12 56_[+3]_15 chrXV:110819-111137 2.3e-12 69_[+3]_2 chrIV:1075339-1075728 2.9e-12 25_[+3]_46 chrVIII:475584-475944 2.9e-12 28_[+3]_43 chrXI:513243-513551 5e-12 20_[+3]_51 chrXV:571779-572141 5e-12 54_[-3]_17 chrX:355189-355289 5e-12 69_[-3]_2 chrXIII:463395-463723 5e-12 51_[-3]_20 chrX:204558-204658 5e-12 23_[-3]_48 chrX:541392-541492 5e-12 23_[-3]_48 chrXII:793730-794085 5e-12 67_[-3]_4 chrVII:544431-544856 5e-12 19_[+3]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAARSSKVAYRTGATARCCRYTACACTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAAARSSKVAYRTGATARCCRYTACACTA width=29 seqs=32 chrX:115811-115911 ( 24) GAAAGCGTGATGTGATAGCCGTTACACTA 1 chrXIII:290624-290980 ( 56) GAAAGCGTGATGTGATAGCCGTTACACTA 1 chrXVI:210064-210449 ( 22) GAAAGCGTGATGTGATAGCCGTTACACTA 1 chrV:487230-487548 ( 28) GAAAGCGTGATGTGATAGCCGTTACACTA 1 chrVII:328400-328863 ( 9) GAAAGCGTGATGTGATAGCCGTTACACTA 1 chrII:644988-645352 ( 54) GAAAGCGTGATGTGATAGCCGTTACACTA 1 chrIX:370234-370596 ( 59) GAAAGCGTGATGTGATAGCCGTTACACTA 1 chrXI:140866-141271 ( 36) GAAAGCGTGATGTGATAGCCGTTACACTA 1 chrVII:541677-542124 ( 7) GAAAGCGTGATGTGATAGCCGTTACACTA 1 chrVII:328400-328878 ( 1) GAAAGCGTGATGTGATAGCCGTTACACTA 1 chrV:176919-177360 ( 17) GAAAGCGTGATGTGATAGCCGTTACACTA 1 chrIV:1017035-1017470 ( 41) GAGAACGTGATGTGATAGCCGTTACACTA 1 chrIX:197415-197767 ( 58) GAGAACGTGATGTGATAGCCGTTACACTA 1 chrIV:802613-802880 ( 71) CAAAACCGAAAGTGATAACCACTACACTA 1 chrV:130982-131336 ( 9) CAAAACCGAAAGTGATAACCACTACACTA 1 chrXII:448440-448899 ( 67) CAAAACCGAAAGTGATAACCACTACACTA 1 chrIV:520799-521126 ( 67) CAAAACCGAAAGTGATAACCACTACACTA 1 chrVIII:134144-134528 ( 42) CAAAACCGAAAGTGATAACCACTACACTA 1 chrXIII:808131-808484 ( 25) CAGAACCGAAAGTGATAACCACTACACTA 1 chrVII:779436-779783 ( 64) GGAAGGGTGGGATGATAACCACTACACTA 1 chrXIV:96068-96473 ( 57) GGAAGGGTGGGATGATAACCACTACACTA 1 chrXV:110819-111137 ( 70) GGAAGGGTGGGATGATAACCACTACACTA 1 chrIV:1075339-1075728 ( 26) GTGAAGGCAACGTGATAGCCGCTACACTA 1 chrVIII:475584-475944 ( 29) GTGAAGGCAACGTGATAGCCGCTACACTA 1 chrXI:513243-513551 ( 21) GACAAGCGCCCATTCTGACCATTAAACTA 1 chrXV:571779-572141 ( 55) GACAAGCGCCCATTCTGACCATTAAACTA 1 chrX:355189-355289 ( 70) GACAAGCGCCCATTCTGACCATTAAACTA 1 chrXIII:463395-463723 ( 52) GACAAGCGCCCATTCTGACCATTAAACTA 1 chrX:204558-204658 ( 24) GACAAGCGCCCATTCTGACCATTAAACTA 1 chrX:541392-541492 ( 24) GACAAGCGCCCATTCTGACCATTAAACTA 1 chrXII:793730-794085 ( 68) GACAAGCGCCCATTCTGACCATTAAACTA 1 chrVII:544431-544856 ( 20) GACAAGCGCCCATTCTGACCATTAAACTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAARSSKVAYRTGATARCCRYTACACTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 41616 bayes= 9.49486 E= 9.5e-190 -1164 -4 208 -1164 146 -1164 -104 -230 95 38 -30 -1164 170 -1164 -1164 -1164 87 -1164 118 -1164 -1164 162 108 -1164 -1164 118 155 -1164 -1164 -162 118 70 -30 38 138 -1164 109 38 -104 -1164 -71 70 -104 40 16 -1164 177 -1164 -1164 -1164 -1164 170 -1164 -1164 196 -30 129 38 -1164 -1164 -1164 -1164 -1164 170 129 -1164 38 -1164 79 -1164 128 -1164 -1164 238 -1164 -1164 -1164 238 -1164 -1164 79 -1164 128 -1164 -1164 84 -1164 109 -1164 -1164 -1164 170 170 -1164 -1164 -1164 -30 196 -1164 -1164 170 -1164 -1164 -1164 -1164 238 -1164 -1164 -1164 -1164 -1164 170 170 -1164 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAARSSKVAYRTGATARCCRYTACACTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 32 E= 9.5e-190 0.000000 0.187500 0.812500 0.000000 0.843750 0.000000 0.093750 0.062500 0.593750 0.250000 0.156250 0.000000 1.000000 0.000000 0.000000 0.000000 0.562500 0.000000 0.437500 0.000000 0.000000 0.593750 0.406250 0.000000 0.000000 0.437500 0.562500 0.000000 0.000000 0.062500 0.437500 0.500000 0.250000 0.250000 0.500000 0.000000 0.656250 0.250000 0.093750 0.000000 0.187500 0.312500 0.093750 0.406250 0.343750 0.000000 0.656250 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.750000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.750000 0.000000 0.250000 0.000000 0.531250 0.000000 0.468750 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.531250 0.000000 0.468750 0.000000 0.000000 0.343750 0.000000 0.656250 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAARSSKVAYRTGATARCCRYTACACTA MEME-3 regular expression -------------------------------------------------------------------------------- GA[AC]A[AG][CG][GC][TG][GAC][AC][TC][GA]T[GT][AC]T[AG][AG]CC[AG][TC]TA[CA]ACTA -------------------------------------------------------------------------------- Time 1284.07 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:1028599-1029091 8.64e-01 100 chrXI:46670-46971 5.57e-01 100 chrV:102208-102624 8.95e-01 100 chrXV:989078-989416 4.05e-01 100 chrII:392494-392781 2.47e-01 100 chrII:477062-477490 7.45e-02 51_[+1(3.66e-05)]_19 chrVII:205343-205755 4.08e-05 30_[+1(3.44e-09)]_40 chrVI:33554-33970 8.96e-01 100 chrXV:384774-384941 7.94e-01 100 chrVI:180755-181207 9.58e-07 51_[-2(4.36e-10)]_28 chrIX:197415-197767 3.13e-11 57_[-3(2.43e-15)]_14 chrXI:356119-356426 4.72e-01 100 chrVII:1004058-1004412 1.57e-06 37_[+1(1.31e-05)]_5_[+2(1.29e-07)]_\ 7 chrIX:99654-100004 7.26e-01 100 chrXIV:181385-181801 6.92e-02 100 chrV:176919-177360 1.14e-20 16_[-3(4.88e-17)]_6_[+2(3.19e-10)]_\ 28 chrXVI:297070-297331 7.35e-01 100 chrII:326679-327056 1.04e-02 100 chrXVI:654071-654487 6.97e-01 100 chrX:422747-422847 3.09e-05 47_[+1(1.54e-08)]_23 chrXI:382201-382444 1.90e-01 100 chrVII:544431-544856 4.42e-08 19_[+3(5.04e-12)]_52 chrVIII:74954-75381 6.85e-01 100 chrXVI:821862-822071 8.08e-01 100 chrIX:393832-395804 7.49e-01 100 chrXII:962885-963246 1.68e-06 1_[-1(2.19e-09)]_69 chrXII:1029655-1030071 2.38e-01 100 chrXIV:586042-586413 6.89e-01 100 chrXIV:65182-65532 6.15e-01 100 chrXIV:23672-24088 6.69e-02 100 chrIII:308788-308915 8.04e-04 9_[-2(3.58e-05)]_70 chrIV:437590-437946 4.24e-07 61_[+1(2.17e-11)]_9 chrVII:328400-328878 1.14e-20 [-3(4.88e-17)]_6_[+2(3.19e-10)]_44 chrIV:1300942-1301335 4.47e-01 100 chrVIII:388777-389178 4.55e-02 100 chrI:67289-67705 1.74e-01 100 chrVII:110413-110825 5.12e-05 64_[-2(1.71e-07)]_15 chrXVI:303518-303775 4.16e-02 66_[+2(4.41e-05)]_13 chrIII:149739-150113 4.49e-05 50_[+1(3.50e-08)]_20 chrX:119993-120093 9.90e-01 100 chrVII:700438-701203 6.63e-01 100 chrV:443106-443397 3.63e-13 9_[-2(6.95e-11)]_5_[-1(6.88e-10)]_\ 35 chrXI:162319-162734 3.04e-12 19_[-2(4.36e-10)]_5_[-1(2.63e-09)]_\ 25 chrXIV:217300-217620 9.14e-01 100 chrV:152894-153055 9.92e-01 100 chrXII:950778-951043 9.51e-01 100 chrXI:327089-327505 8.18e-01 100 chrXII:547091-547507 7.04e-01 100 chrXV:663663-664066 1.10e-05 6_[-2(9.23e-09)]_73 chrII:613817-614233 9.48e-01 100 chrI:68326-68558 6.82e-01 100 chrXVI:435761-436151 3.31e-04 21_[-1(2.20e-07)]_49 chrVIII:17007-17331 4.15e-01 100 chrXIV:302868-302988 3.86e-01 100 chrXV:594247-594606 2.55e-04 13_[+3(1.25e-06)]_58 chrXV:832428-832694 7.92e-01 100 chrXV:161125-161395 8.39e-01 100 chrXII:784190-784564 2.13e-02 100 chrVII:701748-702164 7.25e-01 100 chrVII:541677-542124 1.14e-20 6_[-3(4.88e-17)]_6_[+2(3.19e-10)]_\ 38 chrXIV:88929-89721 9.95e-01 100 chrXII:369307-371099 5.96e-01 100 chrVII:319718-319959 4.21e-04 34_[+2(1.71e-07)]_45 chrIV:217204-217505 5.46e-01 100 chrVIII:134144-134528 1.27e-14 41_[-3(4.57e-13)]_6_[+2(5.63e-09)]_\ 3 chrIV:1017035-1017470 3.40e-18 13_[-2(3.19e-10)]_6_[+3(2.43e-15)]_\ 31 chrXI:140866-141271 1.14e-20 8_[-2(3.19e-10)]_6_[+3(4.88e-17)]_\ 36 chrXII:86932-87114 1.76e-01 100 chrXIII:758980-759396 7.18e-02 72_[+2(4.30e-05)]_7 chrVII:648937-649343 6.48e-01 100 chrIV:323162-323329 7.14e-01 100 chrV:438535-438877 2.50e-01 100 chrIV:386469-386998 8.11e-02 100 chrIV:411272-411626 7.31e-01 100 chrII:167911-168192 1.23e-01 100 chrVI:95467-95836 3.04e-01 100 chrXI:517781-518145 9.43e-01 100 chrX:445112-445212 9.64e-01 100 chrX:651274-651374 9.08e-01 100 chrVIII:115176-115454 5.08e-01 100 chrIV:1095232-1095629 1.26e-06 43_[-1(2.67e-10)]_27 chrXIII:753138-753554 7.93e-01 100 chrIV:992664-993020 3.79e-01 100 chrX:90070-90170 7.45e-01 100 chrXIII:372337-372656 1.10e-05 7_[-2(9.23e-09)]_72 chrIV:117178-117597 9.85e-01 100 chrXVI:193001-193776 8.11e-01 100 chrXI:67765-68084 6.11e-01 100 chrVII:397888-398382 3.83e-01 100 chrVI:191459-191774 1.91e-05 9_[-1(3.44e-09)]_61 chrX:233760-233860 9.51e-07 67_[+1(1.37e-10)]_3 chrXV:976342-976586 1.61e-09 14_[+1(1.54e-08)]_5_[+2(7.85e-08)]_\ 30 chrXIV:721810-722226 6.19e-02 100 chrX:390916-391016 1.14e-05 15_[-1(1.54e-08)]_55 chrXII:201791-202207 9.55e-01 100 chrXII:793730-794085 3.03e-08 67_[-3(5.04e-12)]_4 chrXIII:888800-889216 5.74e-01 100 chrXII:794574-795418 4.63e-01 100 chrII:255969-256385 4.43e-01 100 chrIX:248666-249455 9.86e-01 100 chrV:491045-491395 8.49e-02 100 chrXIII:145898-146280 2.63e-01 100 chrXV:380853-381269 6.86e-01 100 chrIX:174931-175176 2.76e-16 35_[+1(3.50e-15)]_5_[+2(6.24e-09)]_\ 9 chrXII:424177-424429 4.99e-01 100 chrX:703272-703372 1.50e-01 100 chrV:435649-435965 1.15e-15 3_[-2(8.48e-11)]_5_[-1(1.18e-12)]_\ 41 chrVIII:115285-115701 1.64e-01 100 chrXVI:678963-679435 9.03e-01 100 chrXIV:585583-585769 7.94e-01 100 chrVI:223950-224173 9.95e-01 100 chrII:266198-266619 1.55e-16 27_[+1(3.50e-15)]_5_[+2(6.24e-09)]_\ 17 chrXI:302728-303171 1.79e-02 25_[+1(4.94e-05)]_45 chrIX:257364-257690 1.74e-01 100 chrXVI:819335-819729 7.91e-06 55_[+1(6.88e-10)]_15 chrXV:446423-446839 5.03e-01 100 chrVII:1382-1798 6.07e-01 100 chrVII:316871-317287 9.84e-01 100 chrXV:620953-621369 1.21e-01 100 chrXVI:56010-56384 3.22e-05 30_[-2(2.01e-07)]_49 chrXII:899375-899531 9.56e-01 100 chrVII:310502-311676 9.60e-01 100 chrXVI:622414-622825 1.21e-06 24_[-1(2.67e-10)]_46 chrV:61682-62115 1.66e-06 50_[-2(4.36e-10)]_29 chrXIII:195953-196340 4.55e-02 100 chrXI:645403-645781 8.34e-01 100 chrIX:393390-393837 3.85e-01 100 chrXI:283329-283506 9.72e-01 100 chrX:541392-541492 1.13e-12 23_[-3(5.04e-12)]_6_[+2(6.43e-08)]_\ 21 chrX:204558-204658 1.13e-12 23_[-3(5.04e-12)]_6_[+2(6.43e-08)]_\ 21 chrVII:1050190-1050550 3.03e-01 100 chrVII:426972-427225 1.93e-01 100 chrXV:110819-111137 4.46e-15 42_[-2(4.36e-10)]_6_[+3(2.32e-12)]_\ 2 chrXIII:759182-759598 3.66e-01 100 chrXIII:253376-253563 2.46e-01 100 chrXIII:761932-762348 2.02e-01 100 chrVII:730953-731353 2.48e-11 42_[+1(9.66e-11)]_5_[+2(2.64e-08)]_\ 2 chrVI:221759-222065 3.44e-01 100 chrXII:348401-348706 8.26e-01 100 chrX:75347-75447 7.70e-01 100 chrVI:157848-158190 1.29e-06 [-1(2.67e-10)]_70 chrV:423117-423455 6.12e-01 100 chrXI:520460-520876 8.43e-01 100 chrVII:878484-878996 3.22e-05 28_[-2(2.01e-07)]_51 chrXVI:406213-406559 4.58e-02 100 chrII:226939-227297 1.62e-08 14_[+1(2.17e-11)]_56 chrI:81966-82233 2.14e-01 100 chrXIV:631749-632040 4.38e-09 10_[-2(2.35e-12)]_69 chrXVI:502837-503147 1.43e-01 100 chrXII:954212-954628 1.73e-01 100 chrIX:370234-370596 7.32e-13 58_[-3(4.88e-17)]_13 chrXI:430695-431111 6.65e-01 100 chrXII:1002317-1002733 6.70e-01 100 chrX:517714-517814 4.52e-05 16_[-1(3.50e-08)]_54 chrXV:228146-228519 9.29e-07 57_[+1(9.66e-11)]_13 chrXV:281977-282329 3.79e-01 100 chrXIII:463395-463723 2.83e-08 51_[-3(5.04e-12)]_20 chrVII:557551-558007 6.38e-02 100 chrVII:883813-884126 5.12e-01 100 chrIV:599707-600247 7.45e-01 100 chrXI:231091-231659 5.66e-01 100 chrV:469271-469652 9.36e-01 100 chrVII:254150-254569 3.33e-01 100 chrII:332310-332747 8.77e-01 100 chrXIII:652011-652886 9.16e-01 100 chrVII:561505-561708 9.06e-01 100 chrXI:463422-463851 3.01e-01 100 chrIV:1489967-1490495 5.78e-01 100 chrXII:242300-242716 3.33e-01 100 chrXIV:500282-500755 9.96e-01 100 chrXIV:577067-577483 1.57e-01 100 chrXVI:281540-281870 8.23e-01 100 chrVIII:35985-36172 8.54e-01 100 chrXV:424328-424659 9.81e-01 100 chrXII:232284-232411 7.16e-01 100 chrXII:950114-950430 5.91e-01 100 chrII:405682-406168 3.04e-12 9_[+1(2.63e-09)]_5_[+2(4.36e-10)]_\ 35 chrXV:79752-80114 9.23e-01 100 chrIII:168196-168587 9.55e-01 100 chrII:60848-61241 5.29e-01 100 chrIV:539126-539542 1.73e-01 100 chrXII:568006-568445 2.69e-01 100 chrX:293912-294012 3.81e-01 100 chrXV:446923-447339 9.65e-01 100 chrXIII:297317-298360 9.90e-01 100 chrXVI:794522-794799 8.51e-01 100 chrXV:978678-979136 3.62e-01 100 chrIII:295339-295658 1.75e-16 43_[+1(3.50e-15)]_5_[+2(6.24e-09)]_\ 1 chrVII:661560-661928 5.22e-03 61_[+1(1.31e-05)]_9 chrIV:1402894-1403208 5.53e-01 100 chrV:68993-69473 1.18e-01 100 chrXIII:661692-662165 3.46e-01 100 chrVII:345805-346526 5.34e-01 100 chrVIII:103900-104239 9.82e-01 100 chrXII:460411-460877 1.07e-01 100 chrXIV:96068-96473 4.46e-15 29_[-2(4.36e-10)]_6_[+3(2.32e-12)]_\ 15 chrIV:465057-465748 7.93e-01 100 chrVII:828528-828979 3.04e-12 28_[-2(4.36e-10)]_5_[-1(2.63e-09)]_\ 16 chrVIII:127071-127487 5.60e-01 100 chrVII:920012-920162 6.77e-01 100 chrXVI:214621-215229 6.94e-01 100 chrXV:445689-445901 3.07e-01 100 chrIX:386603-386956 3.87e-01 100 chrXIII:408493-408795 1.79e-02 33_[-2(9.31e-06)]_46 chrII:644988-645352 3.97e-14 53_[-3(4.88e-17)]_18 chrXIII:168680-169028 5.42e-06 [+1(3.79e-05)]_19_[+2(1.45e-07)]_30 chrIX:183306-183689 3.63e-13 1_[-2(6.95e-11)]_5_[-1(6.88e-10)]_\ 43 chrIX:427163-427839 3.96e-01 100 chrIV:221958-222310 6.26e-01 100 chrIV:667897-668122 6.61e-07 56_[-2(6.95e-11)]_23 chrXI:102815-103231 6.40e-01 100 chrXIV:174316-174538 9.18e-01 100 chrVII:366081-366548 8.46e-01 100 chrXII:234418-234803 9.71e-01 100 chrXI:517225-517439 9.88e-01 100 chrII:613325-613741 5.60e-01 100 chrX:227977-228077 3.03e-01 100 chrIX:138921-139103 8.81e-01 100 chrVIII:132934-133295 3.99e-07 5_[-1(2.17e-11)]_65 chrII:605701-606115 2.82e-02 38_[-1(7.97e-05)]_32 chrXII:366062-366491 2.35e-01 100 chrXIII:540385-540892 1.81e-01 100 chrV:77554-77933 4.31e-01 100 chrXV:80948-81076 2.02e-01 100 chrVIII:237718-238112 9.87e-07 36_[-1(2.67e-10)]_34 chrXI:260442-260554 8.13e-01 100 chrI:141625-142022 4.55e-01 100 chrVII:598925-599147 5.00e-01 100 chrIV:520799-521126 3.85e-10 66_[-3(4.57e-13)]_5 chrVII:555953-556369 8.69e-01 100 chrVI:210490-210874 2.12e-02 35_[-1(3.79e-05)]_35 chrXV:897725-898141 8.02e-01 100 chrIV:357157-357413 2.76e-01 100 chrXIII:551368-551800 7.35e-01 100 chrXV:866568-866949 1.08e-01 100 chrVII:534780-535228 8.67e-01 100 chrVII:882608-883024 9.17e-01 100 chrXV:505863-506279 3.20e-01 100 chrVII:706948-707225 4.60e-01 100 chrXVI:302693-302981 6.86e-01 100 chrVII:328400-328863 1.14e-20 8_[-3(4.88e-17)]_6_[+2(3.19e-10)]_\ 36 chrXV:445948-446113 2.92e-01 100 chrXVI:775640-776004 6.03e-08 1_[-2(2.12e-07)]_5_[-1(2.20e-07)]_\ 43 chrXII:793984-794199 1.62e-01 100 chrV:441813-442589 3.08e-01 100 chrXII:856331-856449 5.69e-02 100 chrXV:903895-904700 4.72e-01 100 chrV:461832-462136 1.86e-01 100 chrV:362228-362468 6.52e-01 100 chrIX:324189-324594 9.99e-01 100 chrXV:779694-780892 4.13e-01 100 chrXIV:444468-444773 1.45e-01 36_[+1(9.89e-05)]_34 chrXIV:102539-102941 2.48e-11 34_[+1(9.66e-11)]_5_[+2(2.64e-08)]_\ 10 chrIV:1270243-1270659 1.83e-01 100 chrXIII:556972-557251 1.26e-01 100 chrXIII:880462-880893 9.21e-01 100 chrVIII:400969-401385 3.16e-01 100 chrXIII:808131-808484 1.20e-09 24_[+3(1.01e-12)]_47 chrXI:379507-379852 8.43e-01 100 chrIV:130081-130333 7.12e-01 100 chrIV:44157-44573 8.43e-01 100 chrXIII:259055-259416 2.16e-07 16_[-1(2.17e-11)]_54 chrIV:488538-489035 5.79e-06 69_[-2(2.95e-09)]_10 chrV:85063-85769 6.73e-01 100 chrXIII:550687-551103 4.12e-01 100 chrXII:283212-283424 1.89e-01 100 chrXIV:442834-443257 4.08e-05 19_[+1(3.44e-09)]_51 chrXI:458436-458809 3.61e-01 100 chrX:58986-59086 1.30e-10 21_[-1(3.50e-15)]_49 chrXII:656817-657164 4.70e-11 2_[-2(3.69e-09)]_5_[-1(8.58e-08)]_\ 42 chrXVI:188626-188937 1.96e-01 100 chrXIII:631944-632360 8.82e-01 100 chrX:617720-617820 1.39e-04 62_[+1(3.03e-08)]_8 chrXII:975848-976125 2.64e-04 55_[-2(2.64e-08)]_24 chrXIII:626012-626428 1.17e-01 100 chrXIV:63999-64415 6.60e-01 100 chrXVI:520172-520526 3.98e-01 100 chrIV:1201576-1201942 9.16e-09 48_[+1(1.18e-12)]_22 chrVII:412145-412546 7.17e-06 7_[-2(9.23e-09)]_72 chrXV:446707-447123 6.06e-01 100 chrXV:382983-383472 4.45e-01 100 chrII:415513-415863 6.12e-01 100 chrVIII:475584-475944 1.13e-14 [-2(4.36e-10)]_7_[+3(2.91e-12)]_43 chrV:141010-141436 9.08e-01 100 chrXIV:576148-576611 3.91e-01 100 chrX:355189-355289 1.00e-14 22_[+2(4.36e-10)]_26_[-3(5.04e-12)]_\ 2 chrIV:519619-519889 1.25e-06 47_[+1(2.19e-09)]_23 chrXVI:880186-880561 1.20e-05 7_[-1(6.88e-10)]_63 chrXI:313300-313617 1.01e-07 1_[-2(1.71e-07)]_6_[+3(2.74e-07)]_\ 43 chrVII:876206-876596 9.16e-09 50_[+1(1.18e-12)]_20 chrIV:721824-722069 2.87e-01 100 chrXI:618814-619225 1.66e-02 100 chrVIII:211252-211668 8.77e-01 100 chrIV:1075339-1075728 2.38e-08 25_[+3(2.91e-12)]_46 chrVIII:451734-451927 4.98e-01 100 chrIV:541417-542018 9.67e-01 100 chrVII:371265-371448 1.84e-01 100 chrXIII:298391-298854 5.08e-01 100 chrXIII:732044-732392 8.61e-01 100 chrXV:759169-759459 1.02e-01 100 chrVII:930904-931185 5.68e-01 100 chrXV:409564-409980 6.70e-01 100 chrXIV:560573-560841 2.76e-16 44_[-2(6.24e-09)]_5_[-1(3.50e-15)] chrIII:127537-127887 1.73e-06 62_[+1(9.66e-11)]_8 chrVII:857259-857656 4.08e-05 45_[-1(3.44e-09)]_25 chrIV:489900-490316 1.40e-01 100 chrX:445342-445442 5.55e-01 100 chrIX:388237-388411 4.58e-01 100 chrIV:130542-130971 2.53e-01 100 chrXII:374182-374581 6.40e-11 31_[+1(1.37e-10)]_5_[+2(1.81e-07)]_\ 13 chrX:414800-414900 9.30e-16 37_[+1(1.18e-12)]_5_[+2(8.48e-11)]_\ 7 chrXV:796948-797380 2.76e-01 100 chrII:255178-255351 9.33e-01 100 chrXII:262859-263084 5.38e-01 100 chrXVI:699956-700386 3.06e-01 100 chrII:165083-165501 1.20e-01 100 chrXVI:75017-75209 9.47e-01 100 chrVIII:115966-116398 2.56e-11 9_[-1(3.50e-15)]_61 chrXI:143079-143571 9.56e-01 100 chrXII:818468-818783 6.48e-10 40_[-3(7.76e-07)]_6_[+2(1.11e-08)]_\ 4 chrX:122339-122439 4.83e-01 100 chrIX:256598-257014 6.25e-01 100 chrVII:149102-149503 6.08e-01 100 chrX:156745-156845 2.47e-02 100 chrXI:732-1148 7.80e-01 100 chrVI:225085-225353 3.94e-01 100 chrXIII:131700-132077 1.59e-05 21_[-1(2.63e-09)]_49 chrIV:1468065-1468481 7.83e-01 100 chrXII:282518-283117 4.44e-01 100 chrXVI:718633-718792 1.24e-01 100 chrXVI:860201-860553 3.07e-01 100 chrXII:712284-712700 5.73e-01 100 chrXII:202433-202649 5.80e-01 100 chrXVI:731927-732308 3.41e-01 100 chrXVI:76356-76706 5.61e-01 100 chrXV:742459-742579 8.64e-01 100 chrXVI:572082-572469 3.79e-01 100 chrIV:945854-945982 1.18e-01 100 chrX:73414-73514 7.69e-01 100 chrIX:127759-128045 5.28e-01 100 chrXII:1051975-1052245 3.63e-13 19_[-2(6.95e-11)]_5_[-1(6.88e-10)]_\ 25 chrXIII:163760-164176 9.55e-01 100 chrXV:254359-254775 2.88e-01 100 chrXVI:810534-810846 2.48e-11 44_[+1(9.66e-11)]_5_[+2(2.64e-08)] chrXIV:495194-495562 7.96e-01 100 chrIII:163430-163912 2.60e-01 100 chrXII:198595-198850 5.71e-01 100 chrXII:233228-234249 5.58e-01 100 chrXII:368185-368572 8.18e-01 100 chrVII:782205-782621 3.36e-01 100 chrXVI:280714-281093 9.36e-01 100 chrXII:448440-448899 1.27e-14 39_[-2(5.63e-09)]_6_[+3(4.57e-13)]_\ 5 chrXV:620284-620700 4.11e-01 100 chrII:89631-89962 5.56e-02 20_[+1(5.80e-05)]_50 chrXV:160369-160609 5.10e-02 100 chrII:604139-604478 7.60e-01 100 chrVII:555322-555685 6.38e-02 100 chrXVI:280740-281093 9.36e-01 100 chrII:680298-680714 6.06e-01 100 chrXV:571779-572141 4.27e-08 54_[-3(5.04e-12)]_17 chrXV:988269-988685 7.39e-01 100 chrVII:794249-794587 8.66e-08 56_[+1(8.58e-11)]_14 chrX:181943-182043 1.15e-01 100 chrXVI:719181-719600 8.12e-01 100 chrVII:702866-703231 6.13e-01 100 chrXIV:567982-568342 9.70e-07 75_[+2(2.08e-09)]_4 chrXIII:754438-754752 8.30e-01 100 chrIV:601893-602309 3.11e-01 100 chrIV:490992-491252 9.91e-01 100 chrII:197315-197639 1.49e-01 100 chrVIII:148946-149237 8.27e-01 100 chrVIII:17431-18085 9.44e-01 100 chrIII:90741-91077 4.63e-05 8_[+1(3.44e-09)]_62 chrXIII:510898-511176 1.83e-01 100 chrXII:922091-922556 7.23e-01 100 chrXIII:225371-225726 9.00e-01 100 chrXIII:420490-420837 9.28e-01 100 chrXV:159848-160140 2.75e-01 100 chrV:487230-487548 1.14e-20 [-2(3.19e-10)]_6_[+3(4.88e-17)]_44 chrXIII:306457-306899 4.92e-01 100 chrX:291177-291277 2.72e-01 100 chrVII:482394-482786 7.90e-01 100 chrXIV:104633-105069 2.76e-16 11_[+1(3.50e-15)]_5_[+2(6.24e-09)]_\ 33 chrXII:167839-168205 2.36e-07 15_[-1(2.17e-11)]_55 chrVII:438584-438898 3.83e-01 100 chrXIV:374738-375029 6.07e-07 43_[+1(2.67e-10)]_27 chrX:531653-531753 5.87e-07 38_[+2(4.36e-10)]_41 chrXIII:123251-123667 6.67e-01 100 chrXV:113624-113979 8.24e-12 58_[+1(3.50e-15)]_12 chrXI:334415-334831 1.15e-01 100 chrXV:619126-619994 7.67e-01 100 chrVII:788313-788733 5.38e-01 100 chrII:235781-236337 2.31e-02 100 chrVI:223287-223703 7.01e-01 100 chrXIII:352097-352448 7.01e-07 65_[+1(2.67e-10)]_5 chrII:613608-614024 4.61e-01 100 chrXIV:23871-24287 3.32e-01 100 chrXII:48726-49077 9.43e-01 100 chrXI:84025-84368 8.41e-07 70_[+1(2.19e-09)] chrVII:592373-592808 8.40e-01 100 chrXVI:641240-641634 3.26e-01 100 chrXII:253406-253606 7.99e-01 100 chrV:396218-396569 9.51e-01 100 chrXII:592409-592759 6.65e-05 46_[-1(3.03e-08)]_24 chrXVI:210064-210449 4.64e-14 21_[+3(4.88e-17)]_50 chrXIV:569784-570014 3.63e-13 26_[-2(6.95e-11)]_5_[-1(6.88e-10)]_\ 18 chrVII:774159-774560 1.98e-05 47_[+1(8.58e-08)]_23 chrXV:968082-968416 1.95e-01 100 chrV:52785-53201 6.47e-01 100 chrXIII:123463-123879 9.36e-01 100 chrIV:568706-569157 3.04e-12 7_[+1(2.63e-09)]_5_[+2(4.36e-10)]_\ 37 chrXI:99736-100113 1.34e-01 100 chrXI:326986-327215 7.57e-01 100 chrIII:78293-78718 7.46e-01 100 chrIII:228737-229107 2.28e-01 100 chrXV:671091-671347 8.05e-01 100 chrXII:459465-460116 6.92e-01 100 chrI:138967-139322 4.55e-02 100 chrXVI:377926-378342 1.21e-01 100 chrXV:911980-912657 9.88e-01 100 chrVII:726427-726758 9.67e-01 100 chrX:652069-652169 5.13e-01 100 chrXIII:224089-224305 9.76e-01 100 chrXIII:290624-290980 1.38e-12 55_[-3(4.88e-17)]_16 chrXVI:282332-282454 8.36e-01 100 chrXVI:453492-453716 5.52e-01 100 chrXII:243347-243763 9.68e-01 100 chrXV:231998-232414 7.72e-01 100 chrIV:976146-976488 1.04e-01 100 chrIV:308021-308390 7.75e-01 100 chrXII:262989-263405 2.48e-01 100 chrI:166133-166477 5.96e-15 19_[+1(8.58e-11)]_5_[+2(5.76e-11)]_\ 25 chrIX:175037-175453 9.61e-01 100 chrVII:648066-648482 3.44e-01 100 chrVII:823312-823687 1.10e-05 76_[+2(9.23e-09)]_3 chrXI:258490-259144 2.82e-01 100 chrXIII:504704-505108 2.00e-05 47_[+1(3.44e-09)]_23 chrIV:356457-356873 1.84e-01 100 chrX:374290-374390 3.04e-12 38_[-2(4.36e-10)]_5_[-1(2.63e-09)]_\ 6 chrXII:645904-646117 5.80e-01 100 chrXII:673808-674232 4.01e-01 100 chrXII:214751-215093 5.96e-15 19_[-2(5.76e-11)]_5_[-1(8.58e-11)]_\ 25 chrXII:839153-839316 1.87e-01 100 chrXII:97546-97810 5.98e-01 100 chrXV:444946-445348 4.41e-02 10_[+1(5.80e-05)]_60 chrVI:226537-226888 9.30e-16 34_[-2(8.48e-11)]_5_[-1(1.18e-12)]_\ 10 chrVII:990055-990349 6.38e-01 100 chrIV:410199-410531 5.68e-02 70_[-3(9.54e-05)]_1 chrX:115811-115911 8.62e-14 23_[+3(4.88e-17)]_48 chrIV:1150707-1151124 1.61e-01 100 chrII:255830-256128 1.59e-01 100 chrXV:710042-710364 3.07e-05 54_[+1(3.50e-08)]_16 chrIV:914832-915248 5.74e-01 100 chrVII:287218-287634 1.79e-02 42_[-1(4.94e-05)]_28 chrXV:980553-980904 1.02e-07 16_[-3(1.99e-05)]_34_[+2(2.08e-09)] chrXIII:747771-748146 1.59e-05 18_[-1(2.63e-09)]_52 chrVII:122101-122492 9.30e-16 30_[+1(1.18e-12)]_5_[+2(8.48e-11)]_\ 14 chrXII:734637-734981 7.20e-07 51_[+1(6.88e-10)]_19 chrXI:513243-513551 2.88e-08 20_[+3(5.04e-12)]_51 chrVIII:125937-126302 2.56e-01 100 chrV:67259-67675 5.73e-01 100 chrXIV:87337-87789 1.91e-01 100 chrXVI:173421-173709 7.17e-01 100 chrII:347415-347776 1.00e-06 66_[+1(2.19e-09)]_4 chrXII:1018964-1019342 1.49e-01 100 chrXII:628202-628615 4.08e-05 33_[+1(3.44e-09)]_37 chrIV:1270481-1270897 7.23e-01 100 chrVIII:105027-105443 1.90e-01 100 chrXIV:715981-716542 3.35e-01 100 chrVI:64965-65333 8.51e-01 100 chrXIII:302775-303105 3.49e-01 100 chrVII:779436-779783 3.98e-09 63_[-3(2.32e-12)]_8 chrIV:1401244-1401612 7.06e-01 100 chrIV:83364-83743 3.54e-01 100 chrIII:295504-295920 9.54e-01 100 chrIX:287507-287923 2.83e-01 100 chrXV:678831-679176 9.89e-01 100 chrXV:92940-93347 4.99e-01 100 chrXII:636909-637135 4.34e-01 100 chrXIV:181639-182055 2.22e-02 20_[-3(8.92e-06)]_51 chrVII:1049341-1049757 3.32e-02 100 chrXVI:431783-432359 3.88e-01 100 chrX:349014-349114 6.60e-01 100 chrV:433270-433686 5.53e-01 100 chrVIII:122187-122620 9.03e-01 100 chrXI:613323-613739 1.68e-01 100 chrXVI:785639-785966 2.24e-01 100 chrV:130982-131336 3.12e-09 8_[+3(4.57e-13)]_63 chrVII:440599-440996 1.21e-06 22_[-1(2.67e-10)]_48 chrIV:1450914-1451227 6.79e-01 100 chrVII:405408-405711 1.46e-06 2_[+2(4.36e-10)]_77 chrXVI:689395-689825 2.77e-10 12_[+1(1.74e-13)]_58 chrVII:736141-736556 6.02e-06 48_[+1(2.63e-09)]_22 chrV:306490-306906 1.01e-01 100 chrXVI:645384-645763 6.54e-01 100 chrXVI:404864-405651 5.58e-01 100 chrXV:253104-253520 8.20e-01 100 chrII:414796-415212 6.10e-01 100 chrVI:33350-33766 7.83e-01 100 chrIV:538927-539343 2.46e-02 25_[+2(5.02e-05)]_54 chrIX:254244-254546 1.49e-01 100 chrXII:378965-379381 5.20e-01 100 chrXV:438467-438947 3.73e-06 51_[+2(7.62e-10)]_28 chrIV:341271-341611 1.66e-02 37_[+1(1.82e-05)]_33 chrV:138482-138935 3.04e-12 14_[+1(2.63e-09)]_5_[+2(4.36e-10)]_\ 30 chrVII:701548-701964 8.19e-01 100 chrXI:74425-74804 1.05e-07 68_[+1(9.66e-11)]_2 chrV:288276-288704 2.77e-10 46_[-1(1.74e-13)]_24 chrIV:434111-434462 2.76e-16 36_[-2(6.24e-09)]_5_[-1(3.50e-15)]_\ 8 chrVII:255137-255553 8.50e-01 100 chrIX:138695-138900 8.94e-01 100 chrV:434843-435259 5.96e-01 100 chrX:139592-139692 6.62e-01 100 chrIV:802613-802880 1.27e-14 43_[-2(5.63e-09)]_6_[+3(4.57e-13)]_\ 1 chrVII:483268-483776 7.01e-02 12_[+2(4.19e-05)]_67 chrXV:80709-80866 2.63e-01 100 chrVII:95451-95635 5.43e-01 100 chrX:415832-415932 7.84e-03 22_[-1(4.94e-05)]_48 chrIV:579072-579393 6.69e-01 100 chrXVI:744115-744484 1.99e-06 41_[+1(1.31e-05)]_5_[+2(1.29e-07)]_\ 3 chrXVI:856876-857118 6.94e-01 100 chrII:375159-375575 8.51e-01 100 chrXIV:302904-303320 5.69e-01 100 chrXV:447720-448136 3.11e-02 60_[-1(8.75e-05)]_10 chrXII:498519-498967 4.96e-01 100 chrII:606393-606809 7.93e-01 100 chrIV:1362227-1362643 2.65e-01 100 chrXV:391470-391886 2.04e-01 100 chrV:250239-250502 2.18e-05 7_[+2(5.63e-09)]_72 chrXII:426926-427301 9.75e-01 100 chrII:88078-88506 7.93e-01 100 chrIV:234211-234695 9.70e-01 100 chrXII:84103-84354 1.58e-01 100 chrXI:68188-68516 5.56e-01 100 chrXV:40412-40635 4.70e-01 100 chrXI:431367-431620 8.23e-01 100 chrIII:178340-178671 9.87e-01 100 chrVII:366081-366497 8.87e-01 100 chrX:391895-391995 4.93e-02 100 chrX:123051-123151 1.44e-01 100 chrXV:167977-168430 3.13e-01 100 chrV:431025-431531 1.69e-01 100 chrVII:185589-185942 9.30e-16 7_[-2(8.48e-11)]_5_[-1(1.18e-12)]_\ 37 chrXII:522181-522434 4.43e-01 100 chrV:140440-140877 8.93e-01 100 chrV:322030-322426 8.01e-01 100 chrXII:796405-796865 1.00e-01 100 chrIX:98935-99351 8.37e-01 100 chrVI:31968-32183 4.10e-01 100 chrXII:243138-243554 1.48e-01 100 chrXII:903292-903708 2.30e-01 100 chrXV:93752-93967 9.17e-01 100 chrXV:253823-254097 7.53e-01 100 chrXII:781448-781845 4.11e-01 100 chrIV:1359386-1359810 7.36e-01 100 chrXIII:837744-838114 1.23e-02 58_[+1(3.79e-05)]_12 chrXIII:362915-363278 1.01e-07 24_[-3(2.74e-07)]_6_[+2(1.71e-07)]_\ 20 chrIV:1352369-1352678 1.15e-15 1_[-2(8.48e-11)]_5_[-1(1.18e-12)]_\ 43 chrXVI:242806-243077 2.33e-01 100 chrXII:875217-875613 3.88e-14 18_[+1(7.61e-10)]_28_[+2(7.62e-10)]_\ 3 chrX:525890-525990 4.41e-01 100 chrVII:516244-516655 3.20e-01 100 chrIII:142596-142966 3.79e-01 100 chrVI:137324-137714 2.13e-11 25_[-2(2.64e-08)]_5_[-1(9.66e-11)]_\ 19 chrV:311912-312269 5.24e-08 17_[-1(8.58e-11)]_53 chrX:542847-542947 3.59e-02 16_[-1(3.79e-05)]_54 chrIV:358112-358397 7.87e-01 100 chrV:86196-86807 2.62e-01 100 chrXI:578790-579255 3.26e-12 [+1(7.61e-10)]_28_[+2(7.62e-10)]_21 chrV:135262-135640 9.30e-16 32_[-2(8.48e-11)]_5_[-1(1.18e-12)]_\ 12 chrXIV:253651-254067 2.69e-01 100 chrII:408598-409023 4.46e-01 100 chrXI:490783-491134 8.84e-07 67_[+1(1.37e-10)]_3 chrXIV:63136-63526 1.23e-01 100 chrXVI:581885-582249 9.16e-09 52_[+1(1.18e-12)]_18 chrXV:312526-312923 4.96e-01 100 chrXI:282878-283024 3.65e-01 100 chrII:350652-350964 2.67e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************