Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.029792
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.061394
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.089205
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.037836
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.078867
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background
Finished invoke:
  name: bg  status: 0  time: 0.0128
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 968.291342
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 75.504467
Invoking:
  centrimo -seqlen 350 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.216306
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.342926
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background -primary GGCCBAGTKGKTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.327724
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background -primary TAAYCVDRRGRTCMBSGGTTCGAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.330523
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background -primary RRTGTAYGGRTGTWW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.307912
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background -primary CGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.199443
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background -primary CACTANA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.248406
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.232708
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.195341
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background -primary CACATYAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.201734
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background -primary TGGCGYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.253282
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background -primary ATCKTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.225983
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background -primary CCGTGMTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.189595
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background -primary CWGAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.204861
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background -primary CGSTCTCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.208223
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background -primary AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.210423
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background -primary ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.198174
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background --motif GGCCBAGTKGKTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.201738
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background --motif TAAYCVDRRGRTCMBSGGTTCGAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.204973
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background --motif RRTGTAYGGRTGTWW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.200915
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background --motif CGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.111454
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background --motif CACTANA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.101413
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.12563
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.123802
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background --motif CACATYAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.11524
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background --motif TGGCGYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.108554
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background --motif ATCKTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.106392
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background --motif CCGTGMTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.118638
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background --motif CWGAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.114615
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background --motif CGSTCTCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.127516
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background --motif AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.109304
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/background --motif ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/YJM789--CUP9.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.333971
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--CUP9/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.238515
Done