Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.025517 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.057073 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.067794 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.02542 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background Finished invoke: name: bg status: 0 time: 0.009703 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 679.762417 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 60.98374 Invoking: centrimo -seqlen 350 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.2243 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.566023 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background -primary TWMCCACTRVGCCAHVNRVSCW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.486369 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background -primary MBSGGRRTCGAACCSVKGAYCTYMNSRTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.342975 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background -primary DRATGTAYGGRTGTWWAAWDD /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.345957 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.23755 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.219157 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background -primary CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.224193 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background -primary GTWGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.249636 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background -primary SAARAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.260196 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background -primary ACCACKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.241361 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background -primary CACCGTGS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.201789 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background -primary CACTTKCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.219954 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background -primary GGRAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.247503 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background -primary GACTSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.199493 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background -primary TCTAAYCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.221502 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background -primary CTGAGCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.232804 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background --motif TWMCCACTRVGCCAHVNRVSCW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa Finished invoke: name: fimo1 status: 0 time: 0.214482 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background --motif MBSGGRRTCGAACCSVKGAYCTYMNSRTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa Finished invoke: name: fimo2 status: 0 time: 0.208863 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background --motif DRATGTAYGGRTGTWWAAWDD /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa Finished invoke: name: fimo3 status: 0 time: 0.206691 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa Finished invoke: name: fimo4 status: 0 time: 0.106356 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa Finished invoke: name: fimo5 status: 0 time: 0.116855 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background --motif CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa Finished invoke: name: fimo6 status: 0 time: 0.112412 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background --motif GTWGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa Finished invoke: name: fimo7 status: 0 time: 0.106709 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background --motif SAARAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa Finished invoke: name: fimo8 status: 0 time: 0.0928 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background --motif ACCACKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa Finished invoke: name: fimo9 status: 0 time: 0.104931 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background --motif CACCGTGS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa Finished invoke: name: fimo10 status: 0 time: 0.108476 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background --motif CACTTKCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa Finished invoke: name: fimo11 status: 0 time: 0.104139 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background --motif GGRAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa Finished invoke: name: fimo12 status: 0 time: 0.091223 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background --motif GACTSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa Finished invoke: name: fimo13 status: 0 time: 0.104132 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background --motif TCTAAYCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa Finished invoke: name: fimo14 status: 0 time: 0.100686 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/background --motif CTGAGCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/YJM789--AFT1.fa Finished invoke: name: fimo15 status: 0 time: 0.108306 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/YJM789--AFT1/summary.tsv Finished invoke: name: summary status: 0 time: 0.196643 Done