Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.019217 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.05707 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.081949 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.029375 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background Finished invoke: name: bg status: 0 time: 0.023918 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 552.986226 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 68.229776 Invoking: centrimo -seqlen 410 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.250546 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.394814 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary RTCMBSGGTTCGATYCCSVKH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.661146 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary DTGGYYYAGTKGKTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.693599 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary DRATGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.495433 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary AARAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.517542 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.294395 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary TAAGGCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.344556 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary CABACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.310927 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary AGAYCGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.273814 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary CCCATKC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.30745 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.327912 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary CKTTGGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.254234 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary ACATCASG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.222086 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary ACTCACGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.25957 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary CGCGKGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.275483 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary ATCAKAAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.271914 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary CCAASAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.290497 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary ACGGKGAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.28764 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary AGTSTGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo18 status: 0 time: 0.254376 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/spamo_out_19 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background -primary ATGGYCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml Finished invoke: name: spamo19 status: 0 time: 0.334944 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif RTCMBSGGTTCGATYCCSVKH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo1 status: 0 time: 0.245343 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif DTGGYYYAGTKGKTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo2 status: 0 time: 0.237865 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif DRATGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo3 status: 0 time: 0.242815 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif AARAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo4 status: 0 time: 0.127043 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo5 status: 0 time: 0.116467 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif TAAGGCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo6 status: 0 time: 0.127212 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif CABACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo7 status: 0 time: 0.130892 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif AGAYCGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo8 status: 0 time: 0.110068 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif CCCATKC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo9 status: 0 time: 0.119799 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo10 status: 0 time: 0.118988 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif CKTTGGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo11 status: 0 time: 0.125306 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif ACATCASG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo12 status: 0 time: 0.127546 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif ACTCACGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo13 status: 0 time: 0.139094 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif CGCGKGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo14 status: 0 time: 0.145687 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif ATCAKAAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo15 status: 0 time: 0.115562 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif CCAASAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo16 status: 0 time: 0.149189 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif ACGGKGAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo17 status: 0 time: 0.129987 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif AGTSTGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo18 status: 0 time: 0.148355 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/fimo_out_19 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/background --motif ATGGYCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/RM11-1A--ZAP1.fa Finished invoke: name: fimo19 status: 0 time: 0.116755 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ZAP1/summary.tsv Finished invoke: name: summary status: 0 time: 0.222666 Done