Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.011102
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.055126
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.068822
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.011662
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background
Finished invoke:
  name: bg  status: 0  time: 0.009697
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 567.466311
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 53.92379
Invoking:
  centrimo -seqlen 336 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.167792
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.347664
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background -primary GSBYNBDTGGYBYAGTGGKTARRG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.370461
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background -primary AGRTCMBSGGTTCGAYYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.318556
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background -primary WWACAYCCRTACATYW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.302997
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.226105
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.204028
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background -primary AARAAAWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.197215
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background -primary CAASGATG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.198728
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background -primary AMATCCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.198651
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background -primary ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.219432
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background -primary CACCGTGS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.191895
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background -primary GTGATARC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.200942
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background -primary ATTAASAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.197065
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background -primary ACACSCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.196582
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background --motif GSBYNBDTGGYBYAGTGGKTARRG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.179943
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background --motif AGRTCMBSGGTTCGAYYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.174755
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background --motif WWACAYCCRTACATYW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.171949
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.088829
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.082968
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background --motif AARAAAWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.086709
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background --motif CAASGATG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.082685
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background --motif AMATCCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.083214
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background --motif ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.083508
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background --motif CACCGTGS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.08233
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background --motif GTGATARC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.082175
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background --motif ATTAASAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.085961
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/background --motif ACACSCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/RM11-1A--YRR1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.083819
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YRR1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.158121
Done